AutoCloner

Multiple sequence alignment - TraesCS1D01G259800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G259800	chr1D	100.000	3521	0	0	1	3521	352546677	352543157	0.000000e+00	6503
1	TraesCS1D01G259800	chr1A	89.947	2079	161	27	36	2104	453094061	453092021	0.000000e+00	2638
2	TraesCS1D01G259800	chr1A	92.745	510	22	4	3027	3521	453075141	453074632	0.000000e+00	723
3	TraesCS1D01G259800	chr1A	95.133	226	11	0	2177	2402	453092019	453091794	1.200000e-94	357
4	TraesCS1D01G259800	chr1A	87.726	277	26	6	2616	2886	453088614	453088340	2.040000e-82	316
5	TraesCS1D01G259800	chr1A	93.496	123	8	0	2889	3011	453075216	453075094	2.160000e-42	183
6	TraesCS1D01G259800	chr1B	95.007	1442	70	2	679	2120	474759977	474761416	0.000000e+00	2263
7	TraesCS1D01G259800	chr1B	91.436	794	38	11	2748	3521	474834264	474835047	0.000000e+00	1062
8	TraesCS1D01G259800	chr1B	94.222	675	32	6	1	674	474757928	474758596	0.000000e+00	1024
9	TraesCS1D01G259800	chr1B	90.409	636	48	8	2116	2745	474828961	474829589	0.000000e+00	824
10	TraesCS1D01G259800	chr7A	93.865	163	9	1	2442	2604	691723647	691723808	9.760000e-61	244
11	TraesCS1D01G259800	chr7A	93.458	107	7	0	237	343	246978226	246978332	3.640000e-35	159
12	TraesCS1D01G259800	chr7A	93.396	106	7	0	237	342	70457394	70457499	1.310000e-34	158
13	TraesCS1D01G259800	chrUn	93.293	164	10	1	2441	2604	141680745	141680907	1.260000e-59	241
14	TraesCS1D01G259800	chr5B	92.814	167	11	1	2441	2607	490757411	490757576	1.260000e-59	241
15	TraesCS1D01G259800	chr5B	80.078	256	40	5	351	595	324708380	324708125	2.790000e-41	180
16	TraesCS1D01G259800	chr2B	91.860	172	14	0	2442	2613	378686771	378686942	1.260000e-59	241
17	TraesCS1D01G259800	chr2B	79.377	257	39	8	353	595	25810633	25810377	6.040000e-38	169
18	TraesCS1D01G259800	chr2B	79.167	192	39	1	351	541	2358696	2358887	7.930000e-27	132
19	TraesCS1D01G259800	chr4D	92.771	166	11	1	2441	2606	437295927	437295763	4.540000e-59	239
20	TraesCS1D01G259800	chr4D	91.011	178	13	3	2442	2619	136489689	136489515	1.630000e-58	237
21	TraesCS1D01G259800	chr3D	92.727	165	11	1	2441	2605	612268611	612268448	1.630000e-58	237
22	TraesCS1D01G259800	chr3D	85.976	164	23	0	3358	3521	511536159	511535996	3.610000e-40	176
23	TraesCS1D01G259800	chr7B	90.909	176	13	3	2442	2616	394828486	394828659	2.110000e-57	233
24	TraesCS1D01G259800	chr7B	80.899	267	40	4	342	597	107925857	107925591	2.140000e-47	200
25	TraesCS1D01G259800	chr7B	82.292	192	30	3	351	541	595435101	595434913	2.810000e-36	163
26	TraesCS1D01G259800	chr6D	81.008	258	37	7	351	596	103962483	103962226	9.970000e-46	195
27	TraesCS1D01G259800	chr6D	89.167	120	12	1	224	343	468661063	468661181	7.870000e-32	148
28	TraesCS1D01G259800	chr7D	80.150	267	42	4	342	597	145766962	145766696	4.640000e-44	189
29	TraesCS1D01G259800	chr3A	93.396	106	7	0	237	342	364074727	364074832	1.310000e-34	158
30	TraesCS1D01G259800	chr2A	93.396	106	7	0	237	342	213174790	213174685	1.310000e-34	158
31	TraesCS1D01G259800	chr2A	93.396	106	7	0	237	342	517029818	517029713	1.310000e-34	158
32	TraesCS1D01G259800	chr5D	89.167	120	9	3	237	356	212003833	212003948	2.830000e-31	147
33	TraesCS1D01G259800	chr5A	75.172	290	66	6	1068	1354	3412082	3411796	7.930000e-27	132

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G259800	chr1D	352543157	352546677	3520	True	6503.000000	6503	100.000000	1	3521	1	chr1D.!!$R1	3520
1	TraesCS1D01G259800	chr1A	453088340	453094061	5721	True	1103.666667	2638	90.935333	36	2886	3	chr1A.!!$R2	2850
2	TraesCS1D01G259800	chr1A	453074632	453075216	584	True	453.000000	723	93.120500	2889	3521	2	chr1A.!!$R1	632
3	TraesCS1D01G259800	chr1B	474757928	474761416	3488	False	1643.500000	2263	94.614500	1	2120	2	chr1B.!!$F3	2119
4	TraesCS1D01G259800	chr1B	474834264	474835047	783	False	1062.000000	1062	91.436000	2748	3521	1	chr1B.!!$F2	773
5	TraesCS1D01G259800	chr1B	474828961	474829589	628	False	824.000000	824	90.409000	2116	2745	1	chr1B.!!$F1	629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
992	2381	0.316841	TTTGCACAAAATCGCTCCCC	59.683	50.0	0.00	0.0	0.00	4.81	F
2011	3400	0.375106	GTGCATCAAAGAGGCGCTAC	59.625	55.0	7.64	1.2	44.68	3.58	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2244	3634	0.112995	AAGCATGCCTTCCACCAGAA	59.887	50.0	15.66	0.0	0.00	3.02	R
3065	7616	2.565834	GGTGCCTCAGTACCTTGAAGTA	59.434	50.0	0.00	0.0	44.81	2.24	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	30	8.171400	TGGTAAGGAGGGAAAACACATTTTATA	58.829	33.333	0.00	0.00	38.17	0.98
326	338	3.386932	AATGGCCACCACAAGTATGAT	57.613	42.857	8.16	0.00	35.80	2.45
337	349	6.095300	CACCACAAGTATGATAAGATTTGGCA	59.905	38.462	0.00	0.00	0.00	4.92
416	429	4.569761	TTATGGCACGCAACAGTTTTTA	57.430	36.364	0.00	0.00	0.00	1.52
436	449	5.559427	TTATGGTGACCAAATTGATCGTG	57.441	39.130	9.06	0.00	36.95	4.35
437	450	2.857483	TGGTGACCAAATTGATCGTGT	58.143	42.857	0.00	0.00	0.00	4.49
453	466	1.132262	CGTGTCACTTGTGGCAAAAGT	59.868	47.619	17.36	17.36	38.40	2.66
624	637	8.227119	CGATGAGATACGAATCATATAGCTAGG	58.773	40.741	0.00	0.00	36.30	3.02
699	2088	6.535150	TCCTATCTCATTAGCAACGTTCAAAG	59.465	38.462	0.00	0.00	0.00	2.77
866	2255	2.223735	CGGTGACATACTTGCGGACTAT	60.224	50.000	0.00	0.00	0.00	2.12
925	2314	4.768968	GGCCATAGCTATTTTGTCCATCAT	59.231	41.667	2.64	0.00	39.73	2.45
951	2340	0.322816	ACTCACCGGCATTGCAAGAT	60.323	50.000	11.39	0.00	0.00	2.40
974	2363	6.187727	TGAAGACTCACCTTTAATCCAGTT	57.812	37.500	0.00	0.00	0.00	3.16
992	2381	0.316841	TTTGCACAAAATCGCTCCCC	59.683	50.000	0.00	0.00	0.00	4.81
1082	2471	8.845227	AGCTACGATCCATGATCTATATACAAG	58.155	37.037	0.00	0.00	36.96	3.16
1083	2472	8.625651	GCTACGATCCATGATCTATATACAAGT	58.374	37.037	0.00	0.00	36.96	3.16
1102	2491	5.106317	ACAAGTTTTGGTAGTGTGTTCACAG	60.106	40.000	5.85	0.00	39.89	3.66
1172	2561	1.808945	CGCTCATTTCTTCCAAGCACT	59.191	47.619	0.00	0.00	33.21	4.40
1261	2650	2.260869	GGTGTTGACAGCGCCACAT	61.261	57.895	16.18	0.00	36.58	3.21
1293	2682	2.103143	CGCTTCTCCGTCGATGCT	59.897	61.111	0.00	0.00	33.38	3.79
1385	2774	6.530120	TCTCAGCCAAAGTGAGTTTATACAA	58.470	36.000	0.42	0.00	41.92	2.41
1420	2809	7.855409	TGCAATTAACTTACGATGTTATCATGC	59.145	33.333	0.00	7.15	35.76	4.06
1531	2920	1.380785	ATCTCGGGTCGGTGCCTAA	60.381	57.895	0.00	0.00	0.00	2.69
1619	3008	3.002759	GGCCTTAACTTGATCAATCTCGC	59.997	47.826	8.96	6.26	0.00	5.03
1639	3028	3.561097	CGCATTCCCATATATCCCAACCA	60.561	47.826	0.00	0.00	0.00	3.67
1855	3244	1.274728	AGCACACGAGCTCTCAATCTT	59.725	47.619	12.85	0.00	42.18	2.40
1902	3291	5.412594	TCTCAATGACATAAAGTGCTTGGTC	59.587	40.000	0.00	0.00	0.00	4.02
1905	3294	1.804151	GACATAAAGTGCTTGGTCGCA	59.196	47.619	0.00	0.00	37.62	5.10
1909	3298	0.463654	AAAGTGCTTGGTCGCAGTCA	60.464	50.000	0.00	0.00	42.43	3.41
1942	3331	6.349426	CAAAAGCAAATCATCAAGAAACACG	58.651	36.000	0.00	0.00	0.00	4.49
2011	3400	0.375106	GTGCATCAAAGAGGCGCTAC	59.625	55.000	7.64	1.20	44.68	3.58
2032	3421	0.533308	GTTGCACCCTACGACACCAA	60.533	55.000	0.00	0.00	0.00	3.67
2135	3524	6.719370	ACACTTGTGAGCCCTAAAATATTCAA	59.281	34.615	7.83	0.00	0.00	2.69
2214	3604	4.517075	GGTTCTCAAAGAAAGGAGGACAAG	59.483	45.833	0.00	0.00	40.71	3.16
2244	3634	7.391833	GGAGGAAAGTTCTCTTACACATCATTT	59.608	37.037	0.00	0.00	33.09	2.32
2402	3792	5.651530	GCTAGAGCCAAAAGGGAAAATAAC	58.348	41.667	0.00	0.00	40.01	1.89
2404	3794	4.403734	AGAGCCAAAAGGGAAAATAACGA	58.596	39.130	0.00	0.00	40.01	3.85
2428	6960	4.124851	AGTTATAAGAGGCGTCAGTTGG	57.875	45.455	9.41	0.00	0.00	3.77
2432	6964	1.166531	AAGAGGCGTCAGTTGGTTGC	61.167	55.000	9.41	0.00	0.00	4.17
2433	6965	1.598130	GAGGCGTCAGTTGGTTGCT	60.598	57.895	0.52	0.00	0.00	3.91
2434	6966	1.152963	AGGCGTCAGTTGGTTGCTT	60.153	52.632	0.00	0.00	0.00	3.91
2435	6967	1.008538	GGCGTCAGTTGGTTGCTTG	60.009	57.895	0.00	0.00	0.00	4.01
2450	6982	1.078159	TGCTTGGTACCTACTCCCTCA	59.922	52.381	14.36	0.00	0.00	3.86
2544	7078	7.041107	AGAGAGTAGATTCACTCATTTTGCTC	58.959	38.462	14.52	0.00	46.15	4.26
2553	7087	5.109210	TCACTCATTTTGCTCCGTATGTAG	58.891	41.667	0.00	0.00	0.00	2.74
2556	7090	4.439057	TCATTTTGCTCCGTATGTAGTCC	58.561	43.478	0.00	0.00	0.00	3.85
2557	7091	3.965379	TTTTGCTCCGTATGTAGTCCA	57.035	42.857	0.00	0.00	0.00	4.02
2559	7093	5.601583	TTTTGCTCCGTATGTAGTCCATA	57.398	39.130	0.00	0.00	34.86	2.74
2562	7096	4.976864	TGCTCCGTATGTAGTCCATAGTA	58.023	43.478	0.00	0.00	36.71	1.82
2564	7098	5.221783	TGCTCCGTATGTAGTCCATAGTAGA	60.222	44.000	0.00	0.00	36.71	2.59
2566	7100	6.374894	GCTCCGTATGTAGTCCATAGTAGAAT	59.625	42.308	0.00	0.00	36.71	2.40
2567	7101	7.414319	GCTCCGTATGTAGTCCATAGTAGAATC	60.414	44.444	0.00	0.00	36.71	2.52
2568	7102	7.687388	TCCGTATGTAGTCCATAGTAGAATCT	58.313	38.462	0.00	0.00	36.71	2.40
2569	7103	8.819845	TCCGTATGTAGTCCATAGTAGAATCTA	58.180	37.037	0.00	0.00	36.71	1.98
2651	7185	4.877882	TTTGTGTGCGTGCGTGCG	62.878	61.111	0.00	0.00	37.81	5.34
2691	7229	4.747810	GTTGGACAACAATTGATCCATCC	58.252	43.478	22.64	16.50	41.95	3.51
2726	7264	5.859521	TGCATGTTTGTTCAAATAATGGC	57.140	34.783	17.32	13.06	0.00	4.40
2746	7284	2.802247	GCAAACCACTTTGAAAGGCATC	59.198	45.455	10.02	0.00	39.43	3.91
2749	7287	4.326504	AACCACTTTGAAAGGCATCTTG	57.673	40.909	10.02	0.00	32.75	3.02
2853	7391	7.787725	AAGGCGTAATAGACTTTTCATTAGG	57.212	36.000	0.00	0.00	35.61	2.69
2904	7447	5.290493	ACATGATAGTTTCAGCCGGAATA	57.710	39.130	5.05	0.00	37.89	1.75
2919	7462	1.222115	GAATACTCCATGGCGCGGAC	61.222	60.000	8.83	0.00	0.00	4.79
2923	7466	3.071837	TCCATGGCGCGGACTACA	61.072	61.111	8.83	0.00	0.00	2.74
2979	7523	5.098178	GCTCTGTGCTATGGTACACTGTTT	61.098	45.833	0.00	0.00	39.42	2.83
3018	7569	4.157958	GCGCTTCAAGCTGCTCCG	62.158	66.667	16.00	2.60	39.60	4.63
3061	7612	2.484062	CGTGTACCGGCCGTCCTAT	61.484	63.158	26.12	6.36	0.00	2.57
3065	7616	1.105759	GTACCGGCCGTCCTATGAGT	61.106	60.000	26.12	14.43	0.00	3.41
3131	7682	1.548357	CCTCTAGCACCTGCACCACT	61.548	60.000	0.00	0.00	45.16	4.00
3142	7693	2.438434	CACCACTTCCCCCATCGC	60.438	66.667	0.00	0.00	0.00	4.58
3263	7814	2.901042	GTCATCACGTCCCCCTCC	59.099	66.667	0.00	0.00	0.00	4.30
3419	7985	1.538047	TCCCGTAGCTAAACACGTCT	58.462	50.000	6.06	0.00	36.44	4.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
11	12	9.975218	ACTCAGTATATAAAATGTGTTTTCCCT	57.025	29.630	0.00	0.00	38.44	4.20
52	60	1.405933	CCACATGAACATGCCGAGAGA	60.406	52.381	13.71	0.00	42.39	3.10
53	61	1.012086	CCACATGAACATGCCGAGAG	58.988	55.000	13.71	0.00	42.39	3.20
219	230	5.602291	TGAACCCCAATAGTCCCTTAAAA	57.398	39.130	0.00	0.00	0.00	1.52
234	246	2.492088	GGCAAAGTTAGTCATGAACCCC	59.508	50.000	0.00	0.00	0.00	4.95
416	429	3.420893	ACACGATCAATTTGGTCACCAT	58.579	40.909	10.16	0.00	31.53	3.55
436	449	2.539476	CCAACTTTTGCCACAAGTGAC	58.461	47.619	0.00	0.00	34.59	3.67
437	450	1.134848	GCCAACTTTTGCCACAAGTGA	60.135	47.619	0.00	0.00	34.59	3.41
453	466	1.874129	TAGGCCTAGTTGCTAGCCAA	58.126	50.000	8.91	3.82	34.81	4.52
624	637	5.689383	TCTTGCCAGTTACTTGTCATTTC	57.311	39.130	0.00	0.00	0.00	2.17
699	2088	7.040409	ACTCAGATGACCAAAGTAATTCAAACC	60.040	37.037	0.00	0.00	0.00	3.27
814	2203	5.979993	TGGCAATATGATTTTCACTGCAAT	58.020	33.333	0.00	0.00	33.79	3.56
866	2255	4.098914	ACTTTCCAAGTCCATGCTACAA	57.901	40.909	0.00	0.00	37.02	2.41
925	2314	0.036164	AATGCCGGTGAGTGCTACAA	59.964	50.000	1.90	0.00	0.00	2.41
951	2340	5.825593	ACTGGATTAAAGGTGAGTCTTCA	57.174	39.130	0.00	0.00	0.00	3.02
974	2363	1.531739	GGGGGAGCGATTTTGTGCAA	61.532	55.000	0.00	0.00	0.00	4.08
992	2381	8.919145	GGAGAGTAATACTATTCATCATAGGGG	58.081	40.741	0.00	0.00	39.57	4.79
1082	2471	4.957759	ACTGTGAACACACTACCAAAAC	57.042	40.909	3.39	0.00	36.21	2.43
1083	2472	7.633193	ATTAACTGTGAACACACTACCAAAA	57.367	32.000	3.39	0.00	36.21	2.44
1102	2491	8.974408	GGTTATCTTGTGTCCAAACAAATTAAC	58.026	33.333	10.41	10.41	39.47	2.01
1152	2541	1.808945	AGTGCTTGGAAGAAATGAGCG	59.191	47.619	0.00	0.00	36.17	5.03
1172	2561	3.265221	ACCTTGGCTGATCTCTGATTCAA	59.735	43.478	0.00	0.00	0.00	2.69
1261	2650	0.106708	AAGCGGCTCTGTTCACTTCA	59.893	50.000	1.45	0.00	0.00	3.02
1293	2682	2.239654	CCTCAACTTGGATGGCCTTAGA	59.760	50.000	3.32	0.00	34.31	2.10
1420	2809	8.981647	GTACCCCTGTGTAAACATATATAAACG	58.018	37.037	0.00	0.00	0.00	3.60
1440	2829	1.277842	CCCCATTTTGCAAAGTACCCC	59.722	52.381	12.41	0.00	0.00	4.95
1494	2883	7.169982	CCCGAGATCAACAATAATACTTGACTC	59.830	40.741	0.00	0.00	0.00	3.36
1504	2893	2.498481	ACCGACCCGAGATCAACAATAA	59.502	45.455	0.00	0.00	0.00	1.40
1531	2920	5.900123	TCTTCTCCCGAATCTCTTTTCCTAT	59.100	40.000	0.00	0.00	0.00	2.57
1598	2987	3.623060	TGCGAGATTGATCAAGTTAAGGC	59.377	43.478	14.54	11.99	0.00	4.35
1619	3008	4.009675	CGTGGTTGGGATATATGGGAATG	58.990	47.826	0.00	0.00	0.00	2.67
1712	3101	0.179234	TTCAGTTTGGTCGTGGCTCA	59.821	50.000	0.00	0.00	0.00	4.26
1902	3291	0.737367	TTTGCTCCTCGATGACTGCG	60.737	55.000	0.00	0.00	0.00	5.18
1905	3294	1.731720	GCTTTTGCTCCTCGATGACT	58.268	50.000	0.00	0.00	43.35	3.41
1942	3331	1.453762	CCGTAGTCGATCTGGTCCCC	61.454	65.000	0.00	0.00	39.71	4.81
2109	3498	6.150976	TGAATATTTTAGGGCTCACAAGTGTG	59.849	38.462	5.02	5.02	46.91	3.82
2167	3556	2.225394	ACCGCTCTGGATCATATACCCT	60.225	50.000	0.00	0.00	42.00	4.34
2214	3604	3.257624	TGTAAGAGAACTTTCCTCCGACC	59.742	47.826	0.00	0.00	37.53	4.79
2244	3634	0.112995	AAGCATGCCTTCCACCAGAA	59.887	50.000	15.66	0.00	0.00	3.02
2402	3792	5.759963	ACTGACGCCTCTTATAACTTATCG	58.240	41.667	0.00	0.00	0.00	2.92
2404	3794	6.127140	ACCAACTGACGCCTCTTATAACTTAT	60.127	38.462	0.00	0.00	0.00	1.73
2428	6960	1.907255	AGGGAGTAGGTACCAAGCAAC	59.093	52.381	15.94	4.07	0.00	4.17
2432	6964	3.103080	ACTGAGGGAGTAGGTACCAAG	57.897	52.381	15.94	0.00	30.86	3.61
2433	6965	3.438183	GAACTGAGGGAGTAGGTACCAA	58.562	50.000	15.94	0.00	33.09	3.67
2434	6966	2.292061	GGAACTGAGGGAGTAGGTACCA	60.292	54.545	15.94	0.00	33.09	3.25
2435	6967	2.024177	AGGAACTGAGGGAGTAGGTACC	60.024	54.545	2.73	2.73	37.18	3.34
2522	7056	5.006165	CGGAGCAAAATGAGTGAATCTACTC	59.994	44.000	0.00	0.00	45.71	2.59
2523	7057	4.872691	CGGAGCAAAATGAGTGAATCTACT	59.127	41.667	0.00	0.00	0.00	2.57
2525	7059	4.832248	ACGGAGCAAAATGAGTGAATCTA	58.168	39.130	0.00	0.00	0.00	1.98
2533	7067	4.508124	GGACTACATACGGAGCAAAATGAG	59.492	45.833	0.00	0.00	0.00	2.90
2544	7078	7.925043	AGATTCTACTATGGACTACATACGG	57.075	40.000	0.00	0.00	41.03	4.02
2577	7111	7.263496	ACTCGCTCCGTTTCTAAATATAAGTT	58.737	34.615	0.00	0.00	0.00	2.66
2588	7122	1.884579	TGAACTACTCGCTCCGTTTCT	59.115	47.619	0.00	0.00	0.00	2.52
2590	7124	4.445452	TTATGAACTACTCGCTCCGTTT	57.555	40.909	0.00	0.00	0.00	3.60
2591	7125	4.445452	TTTATGAACTACTCGCTCCGTT	57.555	40.909	0.00	0.00	0.00	4.44
2651	7185	1.295792	ACATCAACACACACACGTCC	58.704	50.000	0.00	0.00	0.00	4.79
2653	7187	1.400142	CCAACATCAACACACACACGT	59.600	47.619	0.00	0.00	0.00	4.49
2691	7229	7.169476	TGAACAAACATGCATAACATCAACAAG	59.831	33.333	0.00	0.00	36.64	3.16
2726	7264	4.326504	AGATGCCTTTCAAAGTGGTTTG	57.673	40.909	0.00	0.00	43.96	2.93
2733	7271	4.589216	TGAACCAAGATGCCTTTCAAAG	57.411	40.909	0.00	0.00	0.00	2.77
2741	7279	4.567959	GCATAACATTTGAACCAAGATGCC	59.432	41.667	0.00	0.00	0.00	4.40
2746	7284	6.814644	ACATCATGCATAACATTTGAACCAAG	59.185	34.615	0.00	0.00	36.64	3.61
2749	7287	7.599630	AAACATCATGCATAACATTTGAACC	57.400	32.000	0.00	0.00	36.64	3.62
2886	7426	4.308265	GGAGTATTCCGGCTGAAACTATC	58.692	47.826	0.00	0.00	36.33	2.08
2904	7447	2.758327	TAGTCCGCGCCATGGAGT	60.758	61.111	18.40	13.67	41.93	3.85
2919	7462	5.572511	CGTAGTACTAGAGCGTATCCTGTAG	59.427	48.000	1.87	0.00	35.47	2.74
2923	7466	4.862902	TCGTAGTACTAGAGCGTATCCT	57.137	45.455	1.87	0.00	0.00	3.24
3065	7616	2.565834	GGTGCCTCAGTACCTTGAAGTA	59.434	50.000	0.00	0.00	44.81	2.24
3503	8069	4.065281	CTCGTCGGCCGGGACTTT	62.065	66.667	27.83	0.00	40.44	2.66

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.