>input_sequence_49306
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--------------------------------------------------------------------ATGAATAGTATT
ACTCTCCTAGGACAATTGCCTAAGCTTTTGATGAGGGGTATTCAAGCTACGATCCATGATCTATATACAAGTTTTGGTAG
TGTGTTCACAGTTAATTTGTTTGGACACAAGATAACCTTCTTGATTGGACCCGAGGTGTCCGCTCATTTCTTCCAAGCAC
TTGAATCAGAGATCAGCCAAGGTAATTTTTATGAGTTCACCGTGCCGATGTTTGGTCAAGAGGTTGGCTTTGGTGTTGAC
AGCGCCACATGAAGTGAACAGAGCCGCTTCTCCGTCGATGCTCTAAGGCCATCCAAGTTGAGGAACCATGTTGATCCCAT
GCTTCAAGAAGTGGAGGTATGTATATACCTCTCAGCCAAAGTGAGTTTATACAATTGCACAATGCAATTAACTTACGATG
TTATCATGCGTTTATATATGTTTACACAGGGGTACTTTGCAAAATGGGGACAAGAGGGCATAATAGATCTAAAGCATGAG
CTGAGTCAAGTATTATTGTTGATCTCGGGTCGGTGCCTAATAGGAAAAGAGATTCGGGAGAAGATGTTGGATGAGTTCTA
CGCATTGTTTCATGATGTTGAAAACGGCCTTAACTTGATCAATCTCGCATTCCCATATATCCCAACCACGATAAACCGCC
GCCGCGACCGAGCACGTAGCAAGCTCGCAGAAATGCTCTCTGAAATCGTGAGGTCACGTATGAGCCACGACCAAACTGAA
GAGGATGCATTACAAAATCTGATTCATTCCAAGTACAAAGATGGGCACTCCATGACCGAATCAGAGGTCACTGGGCTAAT
GGTTGCTTTGGTCTTTGTTGGAAAGCACACGAGCTCTCAATCTTGTGCCTGGACAGGAGCTTACCTTCTCAATGACATAA
AGTGCTTGGTCGCAGTCATCGAGGAGCAAAAGCAAATCATCAAGAAACACGGGGACCAGATCGACTACGGTGTCTTGCTG
GAGATGGATACCCTGCATGGGTGCATCAAAGAGGCGCTACGGTTGCACCCTACGACACCAATGCTAATTCGCAAGGCACA
TAAGCACTTCACGGTGTGGACTAAAGAAGGCAATGAATATAACATCCCAGCAGGGCACACACTTGTGAGCCCTAAAATAT
TCAACAACAACATTCCTAGTATTTATAAGGATCCTAGGGTAT-ATGATCCAGAGCGGTTTGGTTCTCAAAGAAAGGAGGA
CAAGGTCGGAGGAAAGTTCTCTTACACATCATTTTCTGGTGGAAGGCATGCTTGCCCCGGCGAGGCCTATGCTTACATGC
AAATTAAAGTAATATGGAGCCATTTAATTAGAAACTTCGAGCTTAAACTGATATCTCATTTCCCAAAGACAGAGTGGAGC
AAGTTCGGGCTAGAGCCAAAAGGGAAAATAACGATAAG------------------------------------------
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------------------------------------------------------------TTATAAGAGGCGTCAGTTGG
TTGCTTGGTACCTACTCCCTCAGTTCCTAAATGTAAGTCTTTTTAGAGATTTCACTATAA--ATTACATACGGATGTATA
TAGACATATTTTAG------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G259800
TGTTGGTAAGGAGGGAAAACACATTTTATATACTGAGTGCTGCTTT-------TTTTTTTCTCTCGGCATGTTCATGTGG
AATAATAATTTTGTAGTATTCTTACGTTTATATTCAAAAGAGAACTATTTTTTG---TCCAGTTAATTAGAACACATCTA
TTATCTTTAATTCTTTATTGGTTAGAAAAAGTAAACCCTTTGATTTCTACTCAATATAGAATGTATATTTTTTAAGGGAC
TA-TTGGGGTTCATGACTAACTTTGCCACAACTAAACTTAGGCAAACCGTGTCTGCCACAAAAAGTGTGGCAAACAAAAT
GGCCACCACAAGTATGATAAGATTTGGCAAAAAAACTAAGAGCATGTTTGGTTGGCCTCCCCACTTTGC-CAATTTTTGT
GCCACAATTATGGCACGCAACAGTTTTTATGGTGACCAAATTGATCGTGTCACTTGTGGCAAAAGTTGGCTAGCAACTAG
GCCTATAACAAGTGGGCCATGTGACTAAGAAAGTGTGGCATGCCACAACTATGGCTTCAACTAAACATTTGCCACGCTTG
CGATAGAAAAGTGTGGCAAAGTGTGGATACCGACCAAACATGCCCTAAGCCGATGAGATACGAATCATATAGCTAGGAAA
TGACAAGTAACTGGCAAGAAATGTGGCCACTCATTAAGAAAAAAAATCCT------------------------------
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------------------------------------------------------------------ATCTCATTAGCAAC
GTTCAAAGGTTTGAATTACTTTGGTCATCTGAGTTCATTATATGCACGTAAAGGTATGCAGTGTATCTTTATCTTAATGG
AAGAACAATAAGTAGAAATGATTTCCAAACCATCTTCATATTATTGCAGTGAAAATCATATTGCCAAGACCGTCGGTGAC
ATACTTGCGGACTATTGTAGCATGGACTTGGAAAGTAGTGACTTGTGGCTGGCCATAGCTATTTTGTCCATCATTGTAGC
ACTCACCGGCATTGCAAGATGAAGACTCACCTTTAATCCAGTTTGCACAAAATCGCTCCCCCCCTATGATGAATAGTATT
ACTCTCCTAGGACAATTGCCTAAGCTTTTGATGAGGGGTATTCAAGCTACGATCCATGATCTATATACAAGTTTTGGTAG
TGTGTTCACAGTTAATTTGTTTGGACACAAGATAACCTTCTTGATTGGACCCGAGGTGTCCGCTCATTTCTTCCAAGCAC
TTGAATCAGAGATCAGCCAAGGTAATTTTTATGAGTTCACCGTGCCGATGTTTGGTCAAGAGGTTGGCTTTGGTGTTGAC
AGCGCCACATGAAGTGAACAGAGCCGCTTCTCCGTCGATGCTCTAAGGCCATCCAAGTTGAGGAACCATGTTGATCCCAT
GCTTCAAGAAGTGGAGGTATGTATATACCTCTCAGCCAAAGTGAGTTTATACAATTGCACAATGCAATTAACTTACGATG
TTATCATGCGTTTATATATGTTTACACAGGGGTACTTTGCAAAATGGGGACAAGAGGGCATAATAGATCTAAAGCATGAG
CTGAGTCAAGTATTATTGTTGATCTCGGGTCGGTGCCTAATAGGAAAAGAGATTCGGGAGAAGATGTTGGATGAGTTCTA
CGCATTGTTTCATGATGTTGAAAACGGCCTTAACTTGATCAATCTCGCATTCCCATATATCCCAACCACGATAAACCGCC
GCCGCGACCGAGCACGTAGCAAGCTCGCAGAAATGCTCTCTGAAATCGTGAGGTCACGTATGAGCCACGACCAAACTGAA
GAGGATGCATTACAAAATCTGATTCATTCCAAGTACAAAGATGGGCACTCCATGACCGAATCAGAGGTCACTGGGCTAAT
GGTTGCTTTGGTCTTTGTTGGAAAGCACACGAGCTCTCAATCTTGTGCCTGGACAGGAGCTTACCTTCTCAATGACATAA
AGTGCTTGGTCGCAGTCATCGAGGAGCAAAAGCAAATCATCAAGAAACACGGGGACCAGATCGACTACGGTGTCTTGCTG
GAGATGGATACCCTGCATGGGTGCATCAAAGAGGCGCTACGGTTGCACCCTACGACACCAATGCTAATTCGCAAGGCACA
TAAGCACTTCACGGTGTGGACTAAAGAAGGCAATGAATATAACATCCCAGCAGGGCACACACTTGTGAGCCCTAAAATAT
TCAACAACAACATTCCTAGTATTTATAAGGATCCTAGGGTAT-ATGATCCAGAGCGGTTTGGTTCTCAAAGAAAGGAGGA
CAAGGTCGGAGGAAAGTTCTCTTACACATCATTTTCTGGTGGAAGGCATGCTTGCCCCGGCGAGGCCTATGCTTACATGC
AAATTAAAGTAATATGGAGCCATTTAATTAGAAACTTCGAGCTTAAACTGATATCTCATTTCCCAAAGACAGAGTGGAGC
AAGTTCGGGCTAGAGCCAAAAGGGAAAATAACGATAAG------------------------------------------
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------------------------------------------------------------TTATAAGAGGCGTCAGTTGG
TTGCTTGGTACCTACTCCCTCAGTTCCTAAATGTAAGTCTTTTTAGAGATTTCACTATAA--ATTACATACGGATGTATA
TAGACATATTTTAGAGAGTAGATTCACTCATTTTGCTCCGTATGTAGTCCATAGTAGAATCTATAAAAAAAACTTATATT
TAGAAACGGAGCGAGTAGTTCATAAATTAATATGTATGCACAACCCATTTGTGTGCGTGCGTGCGGACGTGTG---TG-T
GTTGATGTTGGACAACAATTGATCCATCCTTGTTGATGTTATGCATGTTTGTTCAAATAATGGCAAACCACTTTGAAAGG
CATCTTGGTTCAAATGTTATGCATGATGTTTTTTGCCTCAATAAGAACAACATAATATCAATTAATCATGACACAATTAC
AGTCCAAAGGCGTAATAGACTTTTCATTAGGCAACTTTATAAA--AAAAAACTAGACCTAAACATGA---TAGTTTCAGC
CGGAATACTCCATGGCGCGGACTACAGGATACGCTCTAGTA-CTACGAACGGAAAAACTGCTCTGTGCTATGGTACACTG
TTTCGTGTACCGGCCGTCCCGC-------GGGCGCTTCAAGCTGCTCCGCGCTATCGCTATGGTACGCCGTCCCGTGTAC
CGGCCGTCCTATGAGTACTTCAAGGTACTGAGGCACCGGTGGCATCTCCAAGTCCGTCAGCCCCTCTAGCACCTGCACCA
CTTCCCCCATCGCCGGCCGGGTGTCGACGTCCCGCTGGATGCACCAGCAGGCGACCTTGCACACCCTCCTCATCTCCTCG
GCGTTCGCGTCGCCTTCCAGCTCGGGATCCAGCAACGTCATCACGTCCCCCTCCGCCAGCTTCCTCGCGACCAGCAACGG
GAAGAAGGTCGTCGTCGGGTGCT------CCTCCGC---------GTCTGCCGCCGCCGACACCACGGACCGCCTCTCCC
CTTGCTCGATGTTCCGCCTCCCGGACACGATCTCGAAGAGCATCATCCCGTAGCTAAACACGTCTGCCTTGGCCGTGATG
GCCTCGCCGCTGATCCACTCCGGCGCCAGGTACCCCACGGTGCCGCGCATGGTGGTGAGCACCCGGCTAAAGTCCCGGCC
GACGAG
>chr1B_1
TGTTGGCAAGGTGGGAAAACACATTTTATGTACTGAGTGCTGCTTT-------TTTTTT--TCTCGACATGTTCATTTGG
AATAATAATTTTGTA-TATTCTTACGTTTATATTCAAAAGAGAACT-TTTTTTA---TCCAGTTAATTAGAACACATCTA
TTATATTAAATTATTTTTTGGTTAGAAAAAGTAAACCCTTTGATTTCTACTCAATATAGAATGTAGATTATTTAAGGGAC
TA-TT-GGGTTCATGACTAACTTTGCCACAACTAAACTTAGGCAAACCATGTCCGCTACAAAAAGTGTGGCAAACAAAAT
GGCCACCACAAGTATGACGAGATTTGGC-AAAAAACTAAGAGCATGTTTGGTTGGGCTCCCCACTTTGCCCAATTTTTGT
GCCACAACTATGGCACGCAACAGTTTTTGTGGTGACCAAATTGAGCGTCACACTTGTGGCAAAAGATGGCTAACAACTAG
GCCTATAACAAGTGGGCCATGTGACTAAGAATGTGTGGCATGCCACAACTATGGCTTCAACTAAACATTTGCCACGCTTG
CGATAGAAAAGTGTGGCAAAGTGTGGATACCGACCAAACATGCCCTAAGACGGTGAGATACGAATCATATAGCTAGAAAA
TGATAAGTAACTGGCTAGAAATGTGGCCACTCATTAAGACAAAAAAGGTTAGATTTCTATCGATCTCGATTCTTTTGGCA
GAATGATGAGCTCAAACGAAAGTATAGGCTTGCTAAGTGGGATATAATCTGTAGGCCGAAGGACCAAGGGGGTCTAGGTA
TTGAAAATTTGGAAGTCAAAACATTTGTCTCCTTAGCAAGTGGCTATTTAAACTGGCGTCTGAGACGGAAGCTATTTGGG
CACAGATTTTGCGTAATAAGTATCTTTATGCTAAAACCTTGGCCCAGGTAAATGTCAGGCCTTCTGACTCACCTTTTTGG
AAGGGTTTGATGAGAGTAAAACAACTCTTTTTCAACAAGTCAAAATTTATTGTCGGGAATGGTGCTTCTACGAGGTTTTG
GGAGGATACGTGGCTTGGGGAGACTCCCCTTGCACTACAATATCCTACTTTGTACAACATTGTGCGACATAGAGAAGCCT
ACATTGCAACTGTTTTACGATCCACTCCCCTCAATATTAGTTTTCGGAGGACGCTAGTTAGAAGTCGTTGGGAGGCCTGG
CTCCATCTTGTTAGACGTTTAATGGAAGTCCGGCTGTCCCAGCAACCAGATCAGCTGTATTGGAAACTTACTAAGAATGG
TGTGTTCTCGGTTAAATCTATGTACCTAGATGTCATTAACTCTAGCGTCGTTCCTTCCTCGATTCACGTTTGGAAAGTAA
AGGTTCCCTTACGAATCAAAGTGTTTATGTAGTTTGTGCATAAACAAGTCATTTTGACTAAGGATAACCTGGCAAAACGC
AACTGGATGGGCTCTTCTAGGTGTAGCTTTTGTGATCATAACGAAAACATCAAACACCTCTTTCTCGATTGTCCGTTGGC
TAAGATTCTATGGCGGTCGATTCATATTGCGTTTAATATTAATCAGACCACCTCTATCAACATGTTATTTGGAACGTGGC
TTGATGGGGTTGATTCCGATACTGCAAGACACATTCGTGTTGGCGTCTGTGCTTTATTTTGGGTAGTATGGAACTGCAGA
AATGATTTAGTCTTTAACAGATCAACAAACATTCACTTTTTGCAGGTTATCTTCAGGGCCACGGCGTTCATCCGTATGTG
GTCGCTACTCACTTCGACGGAGGCTAGGGAGCGTTTGGTTACTGCGTCTACCCGATGGGAGATGGTAGCGCGGGATATTT
TCAACCGGTTTGGATGGCGGTCATGTAATAGGATAGACATGTAGTGCTCCTATTGTGATTGCCAGCCGGTTGTGGCTTTG
GGTTTTAGCTCTTTTGAGCTTTTTGTTTATTTTCGCACCTCGATACTTGGCGACTTTGTTACTGCTTTATCTTTTGAATA
ATATGAGCCGTATGCATCTTTCTGATGCAGAGGCTGGGGTAAACCCCCTTTTCGAAAAAGAAAAAAATCTCATTAGCAAC
GTTCAAACGTTTGAATTACTTTGGTTATCTGAGTTCATTATATGCACGTAAAGGTATGCAGTGTATCTTTATCTAAATGT
AAGAACAATAAGTAGATATGATTTCCAAACCATCTTCATATTCTTGCAGTGAAAATCATATTGCCAAGACCGTCGGTGAC
ATACTTGCGGACTACTGTAGCATGGACTTGGAAAGTAGTGACTTGTGGCTGGCCATAGCTATTTTGTCCATCACTGTAGC
ACTCATCGGCATTGCAAGGCGAAGACTCACCTTTAATCCAGTGTGCACAAAATCGCTCCC-CCCTATGGTGAATAGTATT
ACTCTCCTAGGACAATTGCCTAAGCTTTTGATGAGGGGTATTCAAGCTACGACCCATGATCTATATACAAAGTTTGGCAG
TGTGTTCACAATTAATTTGTTTGGACAGAAGATAACCTTCTTGACTGGACCCAAGGTGTCTGCTCATTTCTTCCAAGCAC
CTGAATCAGAGATCAGCCAAGGTAATTTTTATGAGTTCACCGTGCCGATGTTTGGTCAAGAGGTTGGCTTTGGTGTTGAC
AGCGCCACACGAAGTGAACAGATACGCTTCTCCGTCGATGCGCTAAGGCCATCCAAGTTGAGGAACCATGTTGATCCCAT
GCTTCAGGAAGTGGAGGTATGTATATACCTCTCAGCCAAAGTGAGTTTATACAGTTGCACAATGCAATTAACTTACGATG
TTATCATCTGTTTATATATGTTTACACATGGGTACTTTGCAAAATGGGGACAAGAGGGCATAATAGATCTAAAGCACGAG
CTCAGTCAAGTACTATTGTTGATCTTGGGTCGGTGCCTACTAGGAAAAGAGATTCGGGAGAAGATGTTGGATGATTTCTA
CGCATTGTCTCATGATGTTGAAAACGACCTTAACTTGATCAATCTCGTATTCCCATATATCCCAACCGCGATAAACCACC
GTCGCGACCGAGCATGTAGCAAGCTTGCAGAAATGCTCTCTGAAATCGTGAGGTCACGTAGGAGCCACGACCAAATTGAA
GAGGATGCATTACAAAGTCTAATTCATTCCAAGTACAAAGATGGGCACTCCATGACCAAATCAGAGGTCATTGGGCTAAT
AGTTGCTTTGATCTTTGTTGGGAAGCACATGAGCTCTCAATCTAGTGCCGGGATAGGAGCTTACCTTCTCAATGACATAA
AGTGCTTGGTTGCGGTCGTCGAGGAGCAAAAGCAAATCATCAAGAAACACAGGGACCGGATCGACTACGGTGTTTTGCTG
GAGATGGATACCCTGCATGGGTGCATCAAAGAGGCGCTATGGTTGCACCCTACGACACCAGTGCTAATTCGCAAGGCACA
TAAGCACTTCATGGTGTGGA-TAAAGAAGGAAATGAATATAACATCCCAGCAGGGCATACACTTGTGA------------
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>chr1A_36
-----------------------------------AGTGCTGCTTTTTATATTTTTTCT--TTTCAACATTTTCATGTGG
AATAGTAATTTTGTAGTACTCTTACATTTATATTCAAAAGAGAACT-ATTTTGTTCTTCTAGTTAATTAGAACATGTATA
TTATATT--------TATTGGTTACAAAAAGTAAATCCTTTGATTTCTACTCAAT-TAGAATGTAGATTATAGCATGGGA
TTGTT-GGGTTCATGACTAACTTTGCCACAACTAAACTTAGGCAAACCGTGGCTGCCAC-AAAAGTGCGGCAAACAAAAT
GGCCACCAGAAGTATGACAAGATTTGAC-AAAAAACTAAGAGCATCTTTGGTCGGCCTCCCCACTTTGCCCAATTATTGT
GCCACAATTGTGGCACGCGGTAGTTTTTGTGGTGATCACATTGATCGTCACACTTGTGGAAAAATCTGGCTAGCAACTAG
GC-TATAACAAGTGGGGCATCTGACTAGGAAAGTGTGGCATGCCACAACTATGTCTACAACCAAACATTCGCCACGCTTG
CGATAGA----------AAAGTGTGGCTACCGACCAAACATGCCCTAAGCTGATGAGATACGAATCATATAGCTAGAAAA
TGACGAGTAATTGGCAAGAAATGCGCCAACTCATTAAGAAAAAAAATCCT------------------------------
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------------------------------------------------------------------ATCTCATTAGCAAC
TTTCAAACGTTTGAATTAGTTTGGTCACTTGAGTTCATT-TATGCACATAAGGGTATGTGGTGTATCTTTATCTTAATGG
AAGAACAATAAGTAGATATGATTTCCAAACCATCTTCATATT-TTGTAGTGAAAATCATATTGCCAAGACCGTTGGTGAC
ATAGTTGCGGACTACTATAGCATGGACTTCGAAAGTAGTGACTTGTGGCTGACCATAGCTATTTTGTCCATATCACTAGC
ACTTACCGGCATTGCAAGACGGATACTCACCTTTAATCCAATGTGCACACAATCGCTCT--CCCTTTGGTGAATAGTATT
ACTCTCCTAGGACAATTACCTAAGCTTTTGATGAGGGGTATTCAAGTTACGATCCATGATCTATATACAAAATTTGTTAG
TGTGTTCACAATGGATTTGTTTGGACACAAGATAACCTTCTTGATTGGACCTGAAGTGTCAGCTCATTTCTTCCAAGCAC
CTGAATCAGAGATCAACCAAGGTAATTTTTATGAGTTCACCGTGTCGATGTTTGGTCAAGAGGTTGACTTTGGTGTTGAC
AGCGCCACACGAAGTGAACAAAGCCGGTTCTCTATCGTTGCGCTAAGGTCATCCAAGTTGAGAAACCATGTTGATCCCAT
GCTTCAAGAAGTGGAGGTATGTATATACCTCTCAGCCAAAGTGGGTTTATACAGTTGCACAACGCAATTAACTTACGATG
TTATCATGAGTTTATATATGTTTACACATT-----TTTGCAAAATGGGGACAAGAGGGCATAATAGATCTAAAGCATGAG
CTCAGTCAAGTACTACTGTTGATCTCAGGTCGGTGCCTACTAGGAAAAGAGATTCGGGAGAATATGTTGGGTGAGTTCTA
CGCATTGTTTCATGATATTGAAAACGACCTTAACTTGAACAACCTTGTATTCCCATATATCCCAACCGCGATAAATCGCC
ACTGCGACCGTGCGCCCAGCAAGCTCACGGAAATGCTCTCTAAAATCGTGAGGTCACGTAGGAGCCACGGCCAAACTAAG
GAGGATGCACTAAAAAACCTGATTCATTCCAAATACAGAGATGGGCACTCCATGACCGAATCAGAGGTCACTGGGCTAAT
GGTTGCTTTGGTCTTTGTTGGAAAGCACACGAGCTCTCAATCTAGTGCCTGGACGGGTGCTTACCTACTCAATGAC----
-GTGCTTGGTTGCGGTCGTCAAGGAGCAAAAGCAAATCATCAAGAAACACAGGGACCAGATCGACTACGGTGTCTTGCTT
GAGATGGATACCCTGCATGGTTGCATCAAAGAGGCGCTATGGTTGCACCCTACGACACCAGTGCTAATTCGCAAGGCACA
TAAGCACTTCACTGTGTGGACTGAAGAAGGCAATGAATATAACATCCCAACAA---------------------------
---------------------------------------------GATCCAGTGCGGTTTGGTTCTCAAAGAAAGGAGGA
CAATGTCGGAGGAAAGTTCTCTTACACATCATTATCTGGTGGAAGGCATGCTTGCCCTGGCGAGGCCTATGCTTACATGC
AAATTAAAGTAATATGGAGCCATTTAGTTAGGAACTTCAAGCTTAAACTAATATGTCATTTCCCAAAGACAGAGTGGGGC
AAGTTCGGGCTAGAGCCAAAAGGGAAAGTAATAGTAAGAGCACCTATAGCCGAGCGCCCCAAACCGGCCTCAAACGCCAG
GGCTGGCCGCCCGGTCACTAACGGGTCATGATTTTTTGACCCAGACGGATGCCTCAAACGGGCCTCAAAGGCTCAGGCTG
ACCAGCACCCCTTGTATCCAACCCAAATATGGGGCGGATATGGGGTGGCCCGGGTACACCCGGGCACGTCTGCCTGACAA
GGCCGGCCCACCATCGACCCCACGGATGTCCCACCAAAAAAACCTTCGGCTCATCGCTCTGAAACCCTAGCTCACTCTCT
CTCCTCTCCCCACACAGATTCCGATCAAATCCGGCGCAATGTCGAGCTCTGGCAGCCGCACCGACTCCGAGCTGTATCTG
AACTATGAGCTTGCCCTCTGCATCGCCTTGGAGCGGTCCAAGGTGGAGGCCCGGGGGCAGCTCCGGATCTGCAGCCTCGC
CGCAGTCGCAGCTTCCCTGTTGACGCAGCTCGGACGCCGGTGTTGGCCCCTCCCGGCCCGAGCGTAGTGTTGGGGAACGC
AGTATTTCAAAAAAATTCCTACGATCATGTAAGCTCTATCTAGGATATGCATAGCAACGAGAGGGGAGAGTGTGTCTACG
TATCCTCGTAGACCAAAAGTGGAAGCGTTAAGTAACGCGGTTGATCTAGTCGAACGTCTTTGCGATCCAACCGATCAAGT
ATCGAACACACGGCACCTCCGCGATCTGCACACGTTCAGCTCGGCGACGTCCCTCGTACTCTTGATCCAGCTAAGGCCGA
TGGTGATTTCCATCAGCACGACGGCATGTTGATGGTGATGATGAAGTTACCGATGCAGGGCTTCGCCTAAGCTCTACGAC
AATATGACCGAGGTGTAAAACTGTGGAGGGGGCACCACACACGGCTAAAGATCAACTTGTGTGTCTATGGGGTGCCCCCT
CCCCCGTATATGAAGGAGGGGAGGAGGAGGCCGGTCGGCCACATGGGGCGTGCCAAGGGGGGAGGAATCCTACTCCTAGT
AGGAGTAGGTTTCCCCCTTTCCAAGTCCAAGAAGGAGAAGAAGGGAAAGAGGAGAGAAGACAAGGAAAGAGGGGGGCGCC
CCCTTCCCCTTGTCCAATTCGGACTGGGCAAGGGGGGGCGCCACCTCTGGTCGTCCCTCTCTCTTCTCCACTAAGGCCCA
TTGTGGCCCATTAATCCCCCGGGGATTCCGGTAACCTCTCGGTACTCCGGAAAATACCCCATACACTTAGGAACCATTTC
GGTGTTCGAATATAACCTTCCAATATATCAATATTTATGTCTCGACCATTTCGAGACTCCTCGTCATGTCCGTGATCTCA
TCTGGGACTCCAAACAACCTTCGGTACATCAAATCACATAACTCATAATACATATCGCCATCGAACATTAAGCGTGCGGA
CCCTACGAGTTTGAGAACTATGTAGACATGACCAAGACACATCTCTGGTCAATAACCAATAGCGGAACCTGGATGCTCAT
ATTGGTTCCTACATATTCTACAAAGATCTTTATCGGTCAAACCGCATAACAACATACGTTGTTCCCTTTGTCATCAGTAT
GTTACTTGCCCGAGATTCGATCATCCGTATCATCATACCTAGTTCAATATCGTTACCGGCAAGTCTCTTTACTCGTTCGG
CAATGCATCATGCCGTGACTAACTCATTAGTCACATTGCTTGCAAGGCTCATAGTGATGTGTATTACCGAGAAGGCCCAG
AGATACCTCTCCGATACACGAAGTGACAAATCTTAATCTCGATCTATGCCAAAACACCATCGGAGACACCTGTAGAGCAT
CTTTATAATCACCCAGTTATGTTGTGATGTTTGATAGCACAAAAGGTGTTCCTCCGGTATTCGGGAGTTGCATAATCTCA
TAGTCATAGGAACATGTATAAGTCATGAAGAAAGCAATAGCAATAAACTAAACGATCATAGTGCTAAGCTAACGGATGGG
TCTAGTCCATCACATCATTCTCTAATGATGTGATCCCGTTCATCAAATGACAACACATGTCTATGGCTAGGAAACTTAAT
CATCTTTGATTAACGAGCTAGTCAAGTAGAGGCATACTAGGGACACTCTGTTTGTCTATGCATTCACACATGTACTAAGT
TTTCGGTTAATACAATTATAGCATGAATAATAAACATTTATCATGATATAAGGAAATATAAATAACAACTTTATTATTGC
CTCTAGGGAATATTTCCTTCACGCAACTCCAACAGGCGGCCTGCGCAATCCGCGCCTCCCCTACGCCGTCCCCAGCCCCC
ACCGGCTGCTGCTCCCACATGTGGGCAGCGGTGGGTGCATGTGCCAGCCCCGCCGGCCCGGAAGCACACGCCGGGATCAG
AGGCGCGCGCCACCCACCGCAAGCGGCGGCGGGAAAGGGAGAGGACAGAGGTGGAGCAGTCCGTGTGCCGTCCAGTGCCG
CGAGATGCAGGCGGAGCCTGACGAGGACACATGACTCCTCGAATGGGTCTACCGCCGGTCGCTTACGACCGCTCGAAGAC
GGACACGTGGTGGCTCCGCCGGAAGAACGCCAAAGCGCTTCGGATTGCCATTGAGCAGTCCAAGTGCGAGGCGGCAGAGG
CAGTGTTGGAGGCGGCTCGGCTGGCGAAGCTAAAGCGGCAGCGGGGCAGGGAGGTCCGGCGGCTAAAAGGGCTCGTTATC
CTCTTCAACGACGACAACGGCTCCTCCGACGACGACCCAGACGATCCGCCACCAGCCGCTGACACCTACAGCTGTGCCGG
CGACTGAAAGGGCAAAGGGCCGGCGAGGAAGTGGTGAATCTTCGTTGTCTCCGTCTCCAATTTCTAGCTTTTAGTAATGT
ATTTAAATTTATACGCCGTTTATGTGAATTATGTGAACTTCGGCGATCTTTTGGACATGCGTCCGTGATCTTCTAGTGAT
CGGAATGTGCATTTCCCTGATGATTCTATGTTTGTGTGATGATCTACGTTCTTTTTATCTATGTTGCATGCTAGTATGGA
TATGAGGGACCGGATACGAGATACACGAATGTGGACAACAGGATTTGAGGGTTGCCCGGTCAGTTCCTGCGGACGCGCCC
AGACGCGTTCGCGGGCGTTTGAGGGTCGGATTTGCAAAGTCCGGCTGTAGATGCTCTACATTATGAGAGGCATGAGTTGC
TTG----GTACCTA------------------------------------------------------------------
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----------------------------AATATGTATGCACAACCTC--TGTGTGCATGCGTGCTGTGTGTGTTGTTGTT
ATTAATGTCGGACAACAATTGATCCATCTTTGTTGATGTTATGCATGTTTGTTCAAATAATGGGAAACCTGTTTGAAATG
CATGTTCGTTCAAATTTTATGCATCATGCTTTTTTCCTCACTAAAATTAACATAATATCAATTAATCAGGACACAATTAC
AGTCCAAAGGCATAATAGACTTTTCATTAGACAACTTTATAAAATAAAAAACTAGACCTAAACAT---------------
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>chr1B_2116
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---------------------------------------------------------------TGTGAGCCCTACAATAT
TCAGCAACAACATTCCTAGTATTTATAAGGATCCTGGGGTATTATGACCCAGAGCGGGTTGGTTCTCAAAGAAAGGAGGA
CATTGTCGGAGGAAAGTTCTCTTACACATCATTCTCTGGTGGAAGGCATGCTTGCCCCGGCGAGGCATATGCTTACATGC
AAATTAAATTAATATGGAGCCATTTAATTAAAAACTTCGAGTTTAAACTGATATCTCATTTCCCAAAGACAGAGTGGAGC
AAGTTCGGGCTAGAGCCAAAAGGAAAAATAATGGTAAG------------------------------------------
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------------------------------------------------------------TTATAAGAGGCGTCAGTTGC
TTG----GTACCCACTCCCTCCGTTCCTAAATGTAAGTCTTTTTAGACATTTCAAATGAATTATAACATACGGATGTATG
TAGACATATTTTAGAATGGAGATTCATTCATTTTGCTTCGTATGTAATCACTTGTTGGAATCTTTAAAAAGACTTATATT
TGGGTACGGAGGAAGTAGTTCATAAATTAATATGTATGCACAACCCATTTGTATGCGTGCACGCAGGCGTGTG---TGTT
GTTGATGTTGGACAACAATTGATCCATCTTTGTTGATGTTATGCATGTTTGTTCAAATAATGGGAAT-CAGTTTGAAATG
CA------------------------------------------------------------------------------
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>chr1B_2748
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----TTCGTTCAAATGTTATGCATGATGTTTTTTTCCTCAGTAAGAATAAAATA--ATCAATTAATCATGACACAATTAC
AGTCCAATGGCGT--------TTTCATTAGCCAACTTTATAAT--AAAAAACTAGACCTAAACACAATACTAGCTCCAGC
CGGAATGCTCCATGGCGCGGAGTACGAGATATGCTCTAGCTTCTACGAACGGAGAAACTGCTCCGTGCTATGGTACACTG
TTCCGTGTACCGGCCGTCCCGCCTCCCGCGGGCGCTTCAAGCTGCTCCCCGCTATCGCTATGGTACGCCGTCCCGTGTAC
CGGCCGTCCCACGAGCACTTCAAGGTACTGAGGCACCGGTGGCATCTCCAAGTCCGTCAGCCCCTCTAGCACCTGCACCA
CCTCCCCCATCGTCGGCCGCGTGTCGACGTCGCGCTGGATGCACCAGCTGGCGACCTTGCACACCCTCCTCATCTCCTCG
GCGTTCGCGTCGCCTTCCAGCTCGGGATCGAGCAACGTCATCACGCCCCCCTCTGCCAGCTTCCTCGCGACCAGCAACGG
GAAGAAGGTCGTCGTCGGGTGCT------CCTCCGCACCGTCCGCGTCTGCCGTCGACGACACCACGGATCGCCTCTCCC
CTTGCTCGATGTTCCGCCTCCCGGACACGATCTCGAAGAGCATCATCCCGTAGCTAAACACGTCCGCCTTGGCCGTGATG
GCCTCGCCGCTGATCCACTCCGGCGCCAGGTACCCAACGGTGCCGCGCATGGTGGTGAGCACCCGGCTGAAGTCCCGGCC
GACGAG
>chr1A_2889
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----------------------------------------------------------------------TAGTTCCAGC
CGGAATGCTCCATGGCGCGGAGTACGGGATACGCTCTAGTA-CTACGAACGGAAAAACTGCTCTGTGCTATGGTACACTG
TT----------------------------------------------------------------------CCGTGTAC
CGGCCGTCCCACGAGCACTTCAAGGTAGTGAGGCACTGGTGGCATCTCCAAGTCCGTCAGCCCCTCTAGCACCTGCACCA
CCTCCCCCATCGTCGGGCGCGCGTCGACGTCGCGCTGGATGCACCAGCAGGCGACCTTGCACACCCTCCTCATCTCCTCG
GCGTTCGCGTCGCCTTCCAGCTCGGGATCCAGCAATGTCATCACGTCCCCCTCTGCCAGCTTCCTCGCGACCAGCAACGG
GAAGAAGGTCGTCGTCGGGTGTTCCTCTGCCTCCTCACCATCCGCGTCTGTCGCCGACGACACCACGGACCGCCTCTCCC
CTTGCTCGATGTTCCGCCTCCCGGACACGATCTCGAAGAGCATCATCCCGTAGCTGAACACGTCCGCCTTGGCCGTGATG
GCCTCGCCGCTGATCCACTCCGGCGCCAGGTACCCCACCGTGCCGCGCATGGTGGTGAGCACCCGGCTGAAGTCCCGGCC
GACGAG
>SNPs
------S----S-----------------S-----------------------------SS-----S-------------
----------------------------------------------S------S--------------------------
----S--S----S----------------------------------------------------S---S----------
-----S--------------------------------------------------------------------------
-----------------S----------S---------------------------------------------------
----------------------------S-------------------SS---------------S--------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
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-------S------------------------------------------------------------------------
----------------S-------------------------S-------------------------------------
--------------S----------------------------------------------------------S------
-------------------S----------------------S-----------------S-------S-----------
----------------------------------------------------------------------SS--------
----------S-------------------------------------------------S-------------------
S-------------------------------------------------------------------------------
---------S-------------------------------S--------------------------------------
-----------------------------------------------------S--------------------------
--------S-------------------S---------------------------------------------------
--S---------S--------------------------S----------------------------------------
--------------------------S--------------------S-------------------S------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
----------S--S---S--------------------------------S-----------------------------
---------------------------------------S--------------------S-------------------
---------------------------------------------------------S----------------S-----
---S-------------------------------S--------------------------------------------
---S-----------------------------S----------------------------------------------
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-------------------------------S-S----------------------------------------------
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-------------------------------------------------------------------------------S
---SSSS--------------S-------------------------S------SSSS------S--------------S
---------------SS-S-------S----------S--------S--SS-S--S-S-SSSS-S-----S---------
-S-SS------SS---------------------------------------------------S-S-------------
----------------------------S----------------------------------S------S-------S-
---S--S---------------------------S-----S------S--------------------------------
------------------------------S----------------------------------S---------S----
------S--------------S---S------------------------------------------------------
--S---------------------------------------------S-------------------------------
---------S-S---S----------------------------------------------------------------
-S----------S------S-----------S------------------------------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------S-----------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------S-----------
------
>forward_2381
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-----------------------------------------TTTGCACAAAATCGCTCCCC-------------------
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>reverse_3634
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---------------------------------TTCTGGTGGAAGGCATGCTT---------------------------
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>forward_3400
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--------------------GTGCATCAAAGAGGCGCTAC----------------------------------------
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>reverse_7616
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---------------TACTTCAAGGTACTGAGGCACC-------------------------------------------
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------
