Multiple sequence alignment - TraesCS1D01G248800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G248800 | chr1D | 100.000 | 2800 | 0 | 0 | 1 | 2800 | 341495935 | 341493136 | 0.000000e+00 | 5171.0 |
1 | TraesCS1D01G248800 | chr1D | 84.727 | 550 | 56 | 21 | 1224 | 1764 | 341478285 | 341477755 | 2.470000e-145 | 525.0 |
2 | TraesCS1D01G248800 | chr1D | 96.000 | 50 | 2 | 0 | 564 | 613 | 10183740 | 10183789 | 6.430000e-12 | 82.4 |
3 | TraesCS1D01G248800 | chr1D | 92.982 | 57 | 3 | 1 | 564 | 620 | 88315308 | 88315253 | 6.430000e-12 | 82.4 |
4 | TraesCS1D01G248800 | chr1A | 90.941 | 1126 | 65 | 13 | 961 | 2061 | 441184743 | 441183630 | 0.000000e+00 | 1480.0 |
5 | TraesCS1D01G248800 | chr1A | 89.413 | 699 | 52 | 11 | 1007 | 1683 | 589867237 | 589866539 | 0.000000e+00 | 861.0 |
6 | TraesCS1D01G248800 | chr1A | 88.995 | 418 | 16 | 10 | 2367 | 2756 | 441183333 | 441182918 | 9.010000e-135 | 490.0 |
7 | TraesCS1D01G248800 | chr1A | 85.451 | 488 | 35 | 22 | 20 | 490 | 441185547 | 441185079 | 2.520000e-130 | 475.0 |
8 | TraesCS1D01G248800 | chr1A | 82.143 | 560 | 69 | 22 | 1224 | 1772 | 441112904 | 441112365 | 4.250000e-123 | 451.0 |
9 | TraesCS1D01G248800 | chr1A | 86.713 | 286 | 24 | 5 | 2047 | 2331 | 441183606 | 441183334 | 3.500000e-79 | 305.0 |
10 | TraesCS1D01G248800 | chr1A | 87.640 | 178 | 22 | 0 | 998 | 1175 | 441113082 | 441112905 | 1.020000e-49 | 207.0 |
11 | TraesCS1D01G248800 | chr1A | 95.312 | 64 | 3 | 0 | 2737 | 2800 | 441182909 | 441182846 | 4.930000e-18 | 102.0 |
12 | TraesCS1D01G248800 | chr1B | 92.386 | 985 | 50 | 11 | 977 | 1936 | 457379660 | 457378676 | 0.000000e+00 | 1380.0 |
13 | TraesCS1D01G248800 | chr1B | 89.474 | 893 | 64 | 11 | 1936 | 2800 | 457378620 | 457377730 | 0.000000e+00 | 1101.0 |
14 | TraesCS1D01G248800 | chr1B | 87.561 | 410 | 29 | 11 | 1 | 403 | 457380504 | 457380110 | 3.290000e-124 | 455.0 |
15 | TraesCS1D01G248800 | chr1B | 83.333 | 114 | 10 | 7 | 2076 | 2189 | 457321994 | 457321890 | 2.300000e-16 | 97.1 |
16 | TraesCS1D01G248800 | chr1B | 96.078 | 51 | 2 | 0 | 564 | 614 | 429603078 | 429603128 | 1.790000e-12 | 84.2 |
17 | TraesCS1D01G248800 | chr3A | 89.078 | 412 | 33 | 4 | 1326 | 1725 | 31808744 | 31808333 | 4.160000e-138 | 501.0 |
18 | TraesCS1D01G248800 | chr3A | 93.284 | 268 | 18 | 0 | 1007 | 1274 | 31809343 | 31809076 | 2.020000e-106 | 396.0 |
19 | TraesCS1D01G248800 | chr3A | 100.000 | 29 | 0 | 0 | 2603 | 2631 | 61433214 | 61433186 | 1.000000e-03 | 54.7 |
20 | TraesCS1D01G248800 | chr4B | 97.959 | 49 | 1 | 0 | 564 | 612 | 670190874 | 670190826 | 4.970000e-13 | 86.1 |
21 | TraesCS1D01G248800 | chr7B | 96.000 | 50 | 2 | 0 | 564 | 613 | 433174814 | 433174863 | 6.430000e-12 | 82.4 |
22 | TraesCS1D01G248800 | chr7A | 96.000 | 50 | 2 | 0 | 564 | 613 | 14373514 | 14373465 | 6.430000e-12 | 82.4 |
23 | TraesCS1D01G248800 | chr4D | 94.340 | 53 | 2 | 1 | 564 | 615 | 486767982 | 486767930 | 2.310000e-11 | 80.5 |
24 | TraesCS1D01G248800 | chr6D | 91.379 | 58 | 4 | 1 | 564 | 620 | 400063709 | 400063766 | 8.320000e-11 | 78.7 |
25 | TraesCS1D01G248800 | chr6D | 89.831 | 59 | 5 | 1 | 564 | 622 | 68334434 | 68334377 | 1.080000e-09 | 75.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G248800 | chr1D | 341493136 | 341495935 | 2799 | True | 5171.000000 | 5171 | 100.0000 | 1 | 2800 | 1 | chr1D.!!$R3 | 2799 |
1 | TraesCS1D01G248800 | chr1D | 341477755 | 341478285 | 530 | True | 525.000000 | 525 | 84.7270 | 1224 | 1764 | 1 | chr1D.!!$R2 | 540 |
2 | TraesCS1D01G248800 | chr1A | 589866539 | 589867237 | 698 | True | 861.000000 | 861 | 89.4130 | 1007 | 1683 | 1 | chr1A.!!$R1 | 676 |
3 | TraesCS1D01G248800 | chr1A | 441182846 | 441185547 | 2701 | True | 570.400000 | 1480 | 89.4824 | 20 | 2800 | 5 | chr1A.!!$R3 | 2780 |
4 | TraesCS1D01G248800 | chr1A | 441112365 | 441113082 | 717 | True | 329.000000 | 451 | 84.8915 | 998 | 1772 | 2 | chr1A.!!$R2 | 774 |
5 | TraesCS1D01G248800 | chr1B | 457377730 | 457380504 | 2774 | True | 978.666667 | 1380 | 89.8070 | 1 | 2800 | 3 | chr1B.!!$R2 | 2799 |
6 | TraesCS1D01G248800 | chr3A | 31808333 | 31809343 | 1010 | True | 448.500000 | 501 | 91.1810 | 1007 | 1725 | 2 | chr3A.!!$R2 | 718 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
883 | 932 | 0.10741 | TTTCTGCGTGGTTGACTGGT | 60.107 | 50.0 | 0.0 | 0.0 | 0.0 | 4.0 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2279 | 2767 | 0.179004 | TTTGCATCCGAGGTGTTGGT | 60.179 | 50.0 | 0.0 | 0.0 | 0.0 | 3.67 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
64 | 71 | 4.318332 | CTGGTAGATCTCAAGTTGCACAA | 58.682 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
66 | 73 | 4.065088 | GGTAGATCTCAAGTTGCACAACA | 58.935 | 43.478 | 15.40 | 0.00 | 43.47 | 3.33 |
67 | 74 | 4.697352 | GGTAGATCTCAAGTTGCACAACAT | 59.303 | 41.667 | 15.40 | 0.70 | 43.47 | 2.71 |
89 | 96 | 9.562226 | AACATATAATGCTATCCTACCTACCTT | 57.438 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
90 | 97 | 9.562226 | ACATATAATGCTATCCTACCTACCTTT | 57.438 | 33.333 | 0.00 | 0.00 | 0.00 | 3.11 |
94 | 101 | 7.685849 | AATGCTATCCTACCTACCTTTGTAA | 57.314 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
95 | 102 | 6.726490 | TGCTATCCTACCTACCTTTGTAAG | 57.274 | 41.667 | 0.00 | 0.00 | 0.00 | 2.34 |
96 | 103 | 6.200114 | TGCTATCCTACCTACCTTTGTAAGT | 58.800 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
121 | 128 | 1.376609 | GGTGCGGCATTTGGGTCTAG | 61.377 | 60.000 | 5.72 | 0.00 | 0.00 | 2.43 |
134 | 142 | 1.896465 | GGGTCTAGAGATGGGATTCCG | 59.104 | 57.143 | 0.00 | 0.00 | 35.24 | 4.30 |
135 | 143 | 1.896465 | GGTCTAGAGATGGGATTCCGG | 59.104 | 57.143 | 0.00 | 0.00 | 35.24 | 5.14 |
163 | 171 | 2.451167 | CCGCGCTCTTCTTGCTCTG | 61.451 | 63.158 | 5.56 | 0.00 | 0.00 | 3.35 |
164 | 172 | 1.445066 | CGCGCTCTTCTTGCTCTGA | 60.445 | 57.895 | 5.56 | 0.00 | 0.00 | 3.27 |
165 | 173 | 0.805322 | CGCGCTCTTCTTGCTCTGAT | 60.805 | 55.000 | 5.56 | 0.00 | 0.00 | 2.90 |
166 | 174 | 0.929615 | GCGCTCTTCTTGCTCTGATC | 59.070 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
167 | 175 | 1.471327 | GCGCTCTTCTTGCTCTGATCT | 60.471 | 52.381 | 0.00 | 0.00 | 0.00 | 2.75 |
196 | 204 | 1.248785 | TTCGAGCGAGCTAGGGTTGT | 61.249 | 55.000 | 0.00 | 0.00 | 0.00 | 3.32 |
197 | 205 | 1.517257 | CGAGCGAGCTAGGGTTGTG | 60.517 | 63.158 | 0.00 | 0.00 | 0.00 | 3.33 |
198 | 206 | 1.890894 | GAGCGAGCTAGGGTTGTGA | 59.109 | 57.895 | 0.00 | 0.00 | 0.00 | 3.58 |
262 | 270 | 4.082523 | CGCGTGGTCTGATGGGGT | 62.083 | 66.667 | 0.00 | 0.00 | 0.00 | 4.95 |
263 | 271 | 2.125106 | GCGTGGTCTGATGGGGTC | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
279 | 287 | 1.735559 | GTCGTGTGCCGGGTACTTC | 60.736 | 63.158 | 16.35 | 8.53 | 37.11 | 3.01 |
294 | 310 | 2.143876 | ACTTCGGAATGGATTTGGGG | 57.856 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
333 | 350 | 2.550180 | GAGTGTTTCTTGCCACCTCTTC | 59.450 | 50.000 | 0.00 | 0.00 | 31.88 | 2.87 |
399 | 417 | 6.605594 | TCCCTTTACAAATGAGGCGAAATATT | 59.394 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
400 | 418 | 7.776030 | TCCCTTTACAAATGAGGCGAAATATTA | 59.224 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
402 | 420 | 7.860872 | CCTTTACAAATGAGGCGAAATATTACC | 59.139 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
403 | 421 | 8.514330 | TTTACAAATGAGGCGAAATATTACCT | 57.486 | 30.769 | 4.67 | 4.67 | 34.43 | 3.08 |
431 | 473 | 7.615757 | ACCAAAAATAGAAGAGGAATAACCCTG | 59.384 | 37.037 | 0.00 | 0.00 | 40.05 | 4.45 |
467 | 509 | 1.538876 | AGCAACACCCAGCTCCCTA | 60.539 | 57.895 | 0.00 | 0.00 | 36.00 | 3.53 |
468 | 510 | 1.377333 | GCAACACCCAGCTCCCTAC | 60.377 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
472 | 514 | 0.693049 | ACACCCAGCTCCCTACTTTG | 59.307 | 55.000 | 0.00 | 0.00 | 0.00 | 2.77 |
474 | 516 | 1.906574 | CACCCAGCTCCCTACTTTGTA | 59.093 | 52.381 | 0.00 | 0.00 | 0.00 | 2.41 |
475 | 517 | 1.907255 | ACCCAGCTCCCTACTTTGTAC | 59.093 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
477 | 519 | 3.245875 | ACCCAGCTCCCTACTTTGTACTA | 60.246 | 47.826 | 0.00 | 0.00 | 0.00 | 1.82 |
478 | 520 | 3.132467 | CCCAGCTCCCTACTTTGTACTAC | 59.868 | 52.174 | 0.00 | 0.00 | 0.00 | 2.73 |
482 | 524 | 3.447944 | GCTCCCTACTTTGTACTACTGCT | 59.552 | 47.826 | 0.00 | 0.00 | 0.00 | 4.24 |
493 | 539 | 8.585881 | ACTTTGTACTACTGCTTATCTTCTGAA | 58.414 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
494 | 540 | 8.988064 | TTTGTACTACTGCTTATCTTCTGAAG | 57.012 | 34.615 | 11.18 | 11.18 | 0.00 | 3.02 |
495 | 541 | 6.565234 | TGTACTACTGCTTATCTTCTGAAGC | 58.435 | 40.000 | 12.54 | 1.93 | 46.72 | 3.86 |
501 | 547 | 4.275838 | GCTTATCTTCTGAAGCAGCTTG | 57.724 | 45.455 | 13.91 | 0.00 | 45.99 | 4.01 |
502 | 548 | 3.937706 | GCTTATCTTCTGAAGCAGCTTGA | 59.062 | 43.478 | 13.91 | 2.40 | 45.99 | 3.02 |
503 | 549 | 4.575645 | GCTTATCTTCTGAAGCAGCTTGAT | 59.424 | 41.667 | 13.91 | 11.01 | 45.99 | 2.57 |
504 | 550 | 5.504337 | GCTTATCTTCTGAAGCAGCTTGATG | 60.504 | 44.000 | 13.91 | 7.17 | 45.99 | 3.07 |
505 | 551 | 2.708051 | TCTTCTGAAGCAGCTTGATGG | 58.292 | 47.619 | 13.91 | 0.00 | 0.00 | 3.51 |
506 | 552 | 2.039480 | TCTTCTGAAGCAGCTTGATGGT | 59.961 | 45.455 | 13.91 | 0.00 | 0.00 | 3.55 |
507 | 553 | 2.105006 | TCTGAAGCAGCTTGATGGTC | 57.895 | 50.000 | 13.91 | 0.00 | 0.00 | 4.02 |
508 | 554 | 0.725686 | CTGAAGCAGCTTGATGGTCG | 59.274 | 55.000 | 13.91 | 0.00 | 0.00 | 4.79 |
509 | 555 | 1.300971 | TGAAGCAGCTTGATGGTCGC | 61.301 | 55.000 | 13.91 | 0.00 | 0.00 | 5.19 |
510 | 556 | 1.300971 | GAAGCAGCTTGATGGTCGCA | 61.301 | 55.000 | 13.91 | 0.00 | 0.00 | 5.10 |
511 | 557 | 1.303799 | AAGCAGCTTGATGGTCGCAG | 61.304 | 55.000 | 6.93 | 0.00 | 0.00 | 5.18 |
514 | 560 | 1.159285 | CAGCTTGATGGTCGCAGAAA | 58.841 | 50.000 | 0.00 | 0.00 | 39.69 | 2.52 |
515 | 561 | 1.536766 | CAGCTTGATGGTCGCAGAAAA | 59.463 | 47.619 | 0.00 | 0.00 | 39.69 | 2.29 |
517 | 563 | 1.135575 | GCTTGATGGTCGCAGAAAAGG | 60.136 | 52.381 | 0.00 | 0.00 | 39.69 | 3.11 |
521 | 567 | 3.218453 | TGATGGTCGCAGAAAAGGAAAA | 58.782 | 40.909 | 0.00 | 0.00 | 39.69 | 2.29 |
527 | 573 | 4.262036 | GGTCGCAGAAAAGGAAAAGGAAAT | 60.262 | 41.667 | 0.00 | 0.00 | 39.69 | 2.17 |
530 | 576 | 6.582672 | GTCGCAGAAAAGGAAAAGGAAATAAG | 59.417 | 38.462 | 0.00 | 0.00 | 39.69 | 1.73 |
531 | 577 | 5.346011 | CGCAGAAAAGGAAAAGGAAATAAGC | 59.654 | 40.000 | 0.00 | 0.00 | 0.00 | 3.09 |
536 | 582 | 8.526978 | AGAAAAGGAAAAGGAAATAAGCAGATC | 58.473 | 33.333 | 0.00 | 0.00 | 0.00 | 2.75 |
541 | 587 | 6.097412 | GGAAAAGGAAATAAGCAGATCCATGT | 59.903 | 38.462 | 0.00 | 0.00 | 34.30 | 3.21 |
547 | 593 | 6.040166 | GGAAATAAGCAGATCCATGTTGATGT | 59.960 | 38.462 | 0.00 | 0.00 | 32.08 | 3.06 |
548 | 594 | 6.630444 | AATAAGCAGATCCATGTTGATGTC | 57.370 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
552 | 598 | 3.064958 | GCAGATCCATGTTGATGTCTGTG | 59.935 | 47.826 | 0.00 | 0.00 | 36.08 | 3.66 |
553 | 599 | 3.626217 | CAGATCCATGTTGATGTCTGTGG | 59.374 | 47.826 | 0.00 | 0.00 | 32.06 | 4.17 |
554 | 600 | 2.495155 | TCCATGTTGATGTCTGTGGG | 57.505 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
555 | 601 | 1.704628 | TCCATGTTGATGTCTGTGGGT | 59.295 | 47.619 | 0.00 | 0.00 | 0.00 | 4.51 |
556 | 602 | 2.909662 | TCCATGTTGATGTCTGTGGGTA | 59.090 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
557 | 603 | 3.055167 | TCCATGTTGATGTCTGTGGGTAG | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
558 | 604 | 3.307691 | CCATGTTGATGTCTGTGGGTAGT | 60.308 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
559 | 605 | 4.081142 | CCATGTTGATGTCTGTGGGTAGTA | 60.081 | 45.833 | 0.00 | 0.00 | 0.00 | 1.82 |
560 | 606 | 4.530710 | TGTTGATGTCTGTGGGTAGTAC | 57.469 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
561 | 607 | 4.157246 | TGTTGATGTCTGTGGGTAGTACT | 58.843 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
562 | 608 | 4.219944 | TGTTGATGTCTGTGGGTAGTACTC | 59.780 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
563 | 609 | 4.317530 | TGATGTCTGTGGGTAGTACTCT | 57.682 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
564 | 610 | 5.446260 | TGATGTCTGTGGGTAGTACTCTA | 57.554 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
565 | 611 | 5.191426 | TGATGTCTGTGGGTAGTACTCTAC | 58.809 | 45.833 | 0.00 | 0.00 | 44.00 | 2.59 |
566 | 612 | 4.645863 | TGTCTGTGGGTAGTACTCTACA | 57.354 | 45.455 | 0.00 | 0.00 | 45.85 | 2.74 |
567 | 613 | 4.989277 | TGTCTGTGGGTAGTACTCTACAA | 58.011 | 43.478 | 0.00 | 0.00 | 45.85 | 2.41 |
568 | 614 | 4.763793 | TGTCTGTGGGTAGTACTCTACAAC | 59.236 | 45.833 | 0.00 | 3.23 | 45.85 | 3.32 |
569 | 615 | 5.008980 | GTCTGTGGGTAGTACTCTACAACT | 58.991 | 45.833 | 0.00 | 0.00 | 45.85 | 3.16 |
570 | 616 | 5.476254 | GTCTGTGGGTAGTACTCTACAACTT | 59.524 | 44.000 | 0.00 | 0.00 | 45.85 | 2.66 |
571 | 617 | 6.015603 | GTCTGTGGGTAGTACTCTACAACTTT | 60.016 | 42.308 | 0.00 | 0.00 | 45.85 | 2.66 |
572 | 618 | 6.015688 | TCTGTGGGTAGTACTCTACAACTTTG | 60.016 | 42.308 | 0.00 | 0.00 | 45.85 | 2.77 |
573 | 619 | 5.599656 | TGTGGGTAGTACTCTACAACTTTGT | 59.400 | 40.000 | 0.00 | 0.00 | 45.85 | 2.83 |
574 | 620 | 6.777091 | TGTGGGTAGTACTCTACAACTTTGTA | 59.223 | 38.462 | 0.00 | 1.97 | 45.85 | 2.41 |
575 | 621 | 7.087007 | GTGGGTAGTACTCTACAACTTTGTAC | 58.913 | 42.308 | 0.00 | 0.00 | 45.85 | 2.90 |
576 | 622 | 7.006509 | TGGGTAGTACTCTACAACTTTGTACT | 58.993 | 38.462 | 0.00 | 0.00 | 45.85 | 2.73 |
577 | 623 | 8.163408 | TGGGTAGTACTCTACAACTTTGTACTA | 58.837 | 37.037 | 0.00 | 0.00 | 45.85 | 1.82 |
578 | 624 | 9.014297 | GGGTAGTACTCTACAACTTTGTACTAA | 57.986 | 37.037 | 0.00 | 0.00 | 45.85 | 2.24 |
584 | 630 | 8.535690 | ACTCTACAACTTTGTACTAAATCAGC | 57.464 | 34.615 | 0.00 | 0.00 | 42.35 | 4.26 |
585 | 631 | 7.328737 | ACTCTACAACTTTGTACTAAATCAGCG | 59.671 | 37.037 | 0.00 | 0.00 | 42.35 | 5.18 |
586 | 632 | 7.372714 | TCTACAACTTTGTACTAAATCAGCGA | 58.627 | 34.615 | 0.00 | 0.00 | 42.35 | 4.93 |
587 | 633 | 6.224420 | ACAACTTTGTACTAAATCAGCGAC | 57.776 | 37.500 | 0.00 | 0.00 | 40.16 | 5.19 |
588 | 634 | 5.107607 | ACAACTTTGTACTAAATCAGCGACG | 60.108 | 40.000 | 0.00 | 0.00 | 40.16 | 5.12 |
589 | 635 | 4.801891 | ACTTTGTACTAAATCAGCGACGA | 58.198 | 39.130 | 0.00 | 0.00 | 0.00 | 4.20 |
590 | 636 | 4.857588 | ACTTTGTACTAAATCAGCGACGAG | 59.142 | 41.667 | 0.00 | 0.00 | 0.00 | 4.18 |
591 | 637 | 4.430137 | TTGTACTAAATCAGCGACGAGT | 57.570 | 40.909 | 0.00 | 0.00 | 0.00 | 4.18 |
592 | 638 | 5.550232 | TTGTACTAAATCAGCGACGAGTA | 57.450 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
593 | 639 | 5.550232 | TGTACTAAATCAGCGACGAGTAA | 57.450 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
594 | 640 | 6.127810 | TGTACTAAATCAGCGACGAGTAAT | 57.872 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
595 | 641 | 7.250445 | TGTACTAAATCAGCGACGAGTAATA | 57.750 | 36.000 | 0.00 | 0.00 | 0.00 | 0.98 |
596 | 642 | 7.868775 | TGTACTAAATCAGCGACGAGTAATAT | 58.131 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
597 | 643 | 7.801783 | TGTACTAAATCAGCGACGAGTAATATG | 59.198 | 37.037 | 0.00 | 0.00 | 0.00 | 1.78 |
598 | 644 | 6.150318 | ACTAAATCAGCGACGAGTAATATGG | 58.850 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
599 | 645 | 4.848562 | AATCAGCGACGAGTAATATGGA | 57.151 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
600 | 646 | 3.898517 | TCAGCGACGAGTAATATGGAG | 57.101 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
601 | 647 | 2.031069 | TCAGCGACGAGTAATATGGAGC | 60.031 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
602 | 648 | 1.069159 | AGCGACGAGTAATATGGAGCG | 60.069 | 52.381 | 0.00 | 0.00 | 0.00 | 5.03 |
603 | 649 | 1.965083 | CGACGAGTAATATGGAGCGG | 58.035 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
604 | 650 | 1.534163 | CGACGAGTAATATGGAGCGGA | 59.466 | 52.381 | 0.00 | 0.00 | 0.00 | 5.54 |
605 | 651 | 2.031420 | CGACGAGTAATATGGAGCGGAA | 60.031 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
606 | 652 | 3.566523 | GACGAGTAATATGGAGCGGAAG | 58.433 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
607 | 653 | 2.296471 | ACGAGTAATATGGAGCGGAAGG | 59.704 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
608 | 654 | 2.557056 | CGAGTAATATGGAGCGGAAGGA | 59.443 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
609 | 655 | 3.366476 | CGAGTAATATGGAGCGGAAGGAG | 60.366 | 52.174 | 0.00 | 0.00 | 0.00 | 3.69 |
612 | 658 | 5.334421 | AGTAATATGGAGCGGAAGGAGTAT | 58.666 | 41.667 | 0.00 | 0.00 | 0.00 | 2.12 |
620 | 666 | 3.991121 | GAGCGGAAGGAGTATATTCTTGC | 59.009 | 47.826 | 0.00 | 0.00 | 0.00 | 4.01 |
625 | 671 | 5.506815 | CGGAAGGAGTATATTCTTGCGTGTA | 60.507 | 44.000 | 13.88 | 0.00 | 43.71 | 2.90 |
627 | 673 | 6.929606 | GGAAGGAGTATATTCTTGCGTGTATT | 59.070 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
630 | 676 | 7.497595 | AGGAGTATATTCTTGCGTGTATTTGA | 58.502 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
631 | 677 | 7.438459 | AGGAGTATATTCTTGCGTGTATTTGAC | 59.562 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
632 | 678 | 7.223971 | GGAGTATATTCTTGCGTGTATTTGACA | 59.776 | 37.037 | 0.00 | 0.00 | 34.94 | 3.58 |
645 | 691 | 6.911250 | TGTATTTGACACACTCCTTAGAGA | 57.089 | 37.500 | 0.00 | 0.00 | 37.01 | 3.10 |
646 | 692 | 7.297936 | TGTATTTGACACACTCCTTAGAGAA | 57.702 | 36.000 | 0.00 | 0.00 | 37.01 | 2.87 |
656 | 702 | 4.081198 | CACTCCTTAGAGAATGCCAAGACT | 60.081 | 45.833 | 0.00 | 0.00 | 43.39 | 3.24 |
657 | 703 | 4.534103 | ACTCCTTAGAGAATGCCAAGACTT | 59.466 | 41.667 | 0.00 | 0.00 | 43.39 | 3.01 |
677 | 723 | 7.584987 | AGACTTGGAAACTGTATTTTCGATTG | 58.415 | 34.615 | 0.00 | 0.00 | 36.49 | 2.67 |
678 | 724 | 6.149633 | ACTTGGAAACTGTATTTTCGATTGC | 58.850 | 36.000 | 0.00 | 0.00 | 36.49 | 3.56 |
697 | 743 | 3.011818 | TGCTATGTTGTGCAATGAGAGG | 58.988 | 45.455 | 0.00 | 0.00 | 36.15 | 3.69 |
699 | 745 | 1.843368 | ATGTTGTGCAATGAGAGGGG | 58.157 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
701 | 747 | 1.168714 | GTTGTGCAATGAGAGGGGTC | 58.831 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
706 | 752 | 2.424956 | GTGCAATGAGAGGGGTCAATTC | 59.575 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
711 | 757 | 1.556911 | TGAGAGGGGTCAATTCAGAGC | 59.443 | 52.381 | 0.00 | 0.00 | 35.36 | 4.09 |
712 | 758 | 1.556911 | GAGAGGGGTCAATTCAGAGCA | 59.443 | 52.381 | 0.00 | 0.00 | 37.74 | 4.26 |
714 | 760 | 2.087646 | GAGGGGTCAATTCAGAGCAAC | 58.912 | 52.381 | 0.00 | 0.00 | 37.74 | 4.17 |
726 | 772 | 0.603569 | AGAGCAACGTGTGGAGGTAG | 59.396 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
728 | 774 | 1.004918 | GCAACGTGTGGAGGTAGCT | 60.005 | 57.895 | 0.00 | 0.00 | 0.00 | 3.32 |
729 | 775 | 0.602905 | GCAACGTGTGGAGGTAGCTT | 60.603 | 55.000 | 0.00 | 0.00 | 0.00 | 3.74 |
730 | 776 | 1.429463 | CAACGTGTGGAGGTAGCTTC | 58.571 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
731 | 777 | 1.000955 | CAACGTGTGGAGGTAGCTTCT | 59.999 | 52.381 | 1.12 | 0.00 | 0.00 | 2.85 |
734 | 780 | 2.895404 | ACGTGTGGAGGTAGCTTCTAAA | 59.105 | 45.455 | 1.12 | 0.00 | 0.00 | 1.85 |
735 | 781 | 3.514309 | ACGTGTGGAGGTAGCTTCTAAAT | 59.486 | 43.478 | 1.12 | 0.00 | 0.00 | 1.40 |
736 | 782 | 4.020485 | ACGTGTGGAGGTAGCTTCTAAATT | 60.020 | 41.667 | 1.12 | 0.00 | 0.00 | 1.82 |
737 | 783 | 4.935808 | CGTGTGGAGGTAGCTTCTAAATTT | 59.064 | 41.667 | 1.12 | 0.00 | 0.00 | 1.82 |
738 | 784 | 6.103997 | CGTGTGGAGGTAGCTTCTAAATTTA | 58.896 | 40.000 | 1.12 | 0.00 | 0.00 | 1.40 |
739 | 785 | 6.255887 | CGTGTGGAGGTAGCTTCTAAATTTAG | 59.744 | 42.308 | 17.60 | 17.60 | 0.00 | 1.85 |
740 | 786 | 7.104290 | GTGTGGAGGTAGCTTCTAAATTTAGT | 58.896 | 38.462 | 21.69 | 7.94 | 32.61 | 2.24 |
741 | 787 | 8.255905 | GTGTGGAGGTAGCTTCTAAATTTAGTA | 58.744 | 37.037 | 21.69 | 13.41 | 32.61 | 1.82 |
742 | 788 | 8.989131 | TGTGGAGGTAGCTTCTAAATTTAGTAT | 58.011 | 33.333 | 21.69 | 10.76 | 32.61 | 2.12 |
763 | 809 | 1.452145 | TTCTTGGTTTGGCTCCGCAC | 61.452 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
788 | 836 | 2.030717 | ACGAGAATAGACGCAGCTATGG | 60.031 | 50.000 | 0.00 | 0.00 | 31.69 | 2.74 |
805 | 853 | 1.709578 | TGGGTTTTGGTGCAATGCTA | 58.290 | 45.000 | 6.82 | 0.00 | 0.00 | 3.49 |
809 | 857 | 4.469227 | TGGGTTTTGGTGCAATGCTATAAT | 59.531 | 37.500 | 6.82 | 0.00 | 0.00 | 1.28 |
820 | 869 | 4.774200 | GCAATGCTATAATCCTGGGGAAAT | 59.226 | 41.667 | 0.00 | 0.00 | 34.34 | 2.17 |
823 | 872 | 7.363268 | GCAATGCTATAATCCTGGGGAAATTAG | 60.363 | 40.741 | 0.00 | 0.00 | 34.34 | 1.73 |
826 | 875 | 6.183361 | TGCTATAATCCTGGGGAAATTAGCTT | 60.183 | 38.462 | 17.46 | 1.41 | 37.26 | 3.74 |
835 | 884 | 2.690497 | GGGAAATTAGCTTCAGCCTTCC | 59.310 | 50.000 | 0.00 | 9.53 | 43.38 | 3.46 |
837 | 886 | 3.629855 | GGAAATTAGCTTCAGCCTTCCTC | 59.370 | 47.826 | 0.00 | 0.00 | 43.38 | 3.71 |
838 | 887 | 4.522114 | GAAATTAGCTTCAGCCTTCCTCT | 58.478 | 43.478 | 0.00 | 0.00 | 43.38 | 3.69 |
839 | 888 | 4.582973 | AATTAGCTTCAGCCTTCCTCTT | 57.417 | 40.909 | 0.00 | 0.00 | 43.38 | 2.85 |
840 | 889 | 3.618690 | TTAGCTTCAGCCTTCCTCTTC | 57.381 | 47.619 | 0.00 | 0.00 | 43.38 | 2.87 |
841 | 890 | 1.356124 | AGCTTCAGCCTTCCTCTTCA | 58.644 | 50.000 | 0.00 | 0.00 | 43.38 | 3.02 |
842 | 891 | 1.914798 | AGCTTCAGCCTTCCTCTTCAT | 59.085 | 47.619 | 0.00 | 0.00 | 43.38 | 2.57 |
843 | 892 | 2.093021 | AGCTTCAGCCTTCCTCTTCATC | 60.093 | 50.000 | 0.00 | 0.00 | 43.38 | 2.92 |
844 | 893 | 2.548875 | CTTCAGCCTTCCTCTTCATCG | 58.451 | 52.381 | 0.00 | 0.00 | 0.00 | 3.84 |
845 | 894 | 1.561643 | TCAGCCTTCCTCTTCATCGT | 58.438 | 50.000 | 0.00 | 0.00 | 0.00 | 3.73 |
846 | 895 | 1.478510 | TCAGCCTTCCTCTTCATCGTC | 59.521 | 52.381 | 0.00 | 0.00 | 0.00 | 4.20 |
847 | 896 | 1.480137 | CAGCCTTCCTCTTCATCGTCT | 59.520 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
849 | 898 | 1.478510 | GCCTTCCTCTTCATCGTCTGA | 59.521 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
850 | 899 | 2.102252 | GCCTTCCTCTTCATCGTCTGAT | 59.898 | 50.000 | 0.00 | 0.00 | 32.72 | 2.90 |
863 | 912 | 6.908870 | CATCGTCTGATGTCCATCTTTAAA | 57.091 | 37.500 | 8.61 | 0.00 | 45.69 | 1.52 |
864 | 913 | 7.488187 | CATCGTCTGATGTCCATCTTTAAAT | 57.512 | 36.000 | 8.61 | 0.00 | 45.69 | 1.40 |
865 | 914 | 7.923888 | CATCGTCTGATGTCCATCTTTAAATT | 58.076 | 34.615 | 8.61 | 0.00 | 45.69 | 1.82 |
866 | 915 | 7.921786 | TCGTCTGATGTCCATCTTTAAATTT | 57.078 | 32.000 | 8.61 | 0.00 | 38.60 | 1.82 |
867 | 916 | 7.974675 | TCGTCTGATGTCCATCTTTAAATTTC | 58.025 | 34.615 | 8.61 | 0.00 | 38.60 | 2.17 |
868 | 917 | 7.824289 | TCGTCTGATGTCCATCTTTAAATTTCT | 59.176 | 33.333 | 8.61 | 0.00 | 38.60 | 2.52 |
869 | 918 | 7.907045 | CGTCTGATGTCCATCTTTAAATTTCTG | 59.093 | 37.037 | 8.61 | 0.00 | 38.60 | 3.02 |
870 | 919 | 7.699812 | GTCTGATGTCCATCTTTAAATTTCTGC | 59.300 | 37.037 | 8.61 | 0.00 | 38.60 | 4.26 |
871 | 920 | 6.554419 | TGATGTCCATCTTTAAATTTCTGCG | 58.446 | 36.000 | 8.61 | 0.00 | 38.60 | 5.18 |
872 | 921 | 5.957842 | TGTCCATCTTTAAATTTCTGCGT | 57.042 | 34.783 | 0.00 | 0.00 | 0.00 | 5.24 |
873 | 922 | 5.698832 | TGTCCATCTTTAAATTTCTGCGTG | 58.301 | 37.500 | 0.00 | 0.00 | 0.00 | 5.34 |
874 | 923 | 5.095490 | GTCCATCTTTAAATTTCTGCGTGG | 58.905 | 41.667 | 0.00 | 0.00 | 0.00 | 4.94 |
875 | 924 | 4.764823 | TCCATCTTTAAATTTCTGCGTGGT | 59.235 | 37.500 | 0.00 | 0.00 | 0.00 | 4.16 |
876 | 925 | 5.242838 | TCCATCTTTAAATTTCTGCGTGGTT | 59.757 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
877 | 926 | 5.345741 | CCATCTTTAAATTTCTGCGTGGTTG | 59.654 | 40.000 | 0.00 | 0.00 | 0.00 | 3.77 |
878 | 927 | 5.759506 | TCTTTAAATTTCTGCGTGGTTGA | 57.240 | 34.783 | 0.00 | 0.00 | 0.00 | 3.18 |
879 | 928 | 5.516090 | TCTTTAAATTTCTGCGTGGTTGAC | 58.484 | 37.500 | 0.00 | 0.00 | 0.00 | 3.18 |
880 | 929 | 5.298276 | TCTTTAAATTTCTGCGTGGTTGACT | 59.702 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
881 | 930 | 3.354089 | AAATTTCTGCGTGGTTGACTG | 57.646 | 42.857 | 0.00 | 0.00 | 0.00 | 3.51 |
882 | 931 | 1.238439 | ATTTCTGCGTGGTTGACTGG | 58.762 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
883 | 932 | 0.107410 | TTTCTGCGTGGTTGACTGGT | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
884 | 933 | 0.107410 | TTCTGCGTGGTTGACTGGTT | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
885 | 934 | 0.813610 | TCTGCGTGGTTGACTGGTTG | 60.814 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
886 | 935 | 1.078072 | TGCGTGGTTGACTGGTTGT | 60.078 | 52.632 | 0.00 | 0.00 | 0.00 | 3.32 |
887 | 936 | 0.178301 | TGCGTGGTTGACTGGTTGTA | 59.822 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
888 | 937 | 0.584876 | GCGTGGTTGACTGGTTGTAC | 59.415 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
889 | 938 | 1.942677 | CGTGGTTGACTGGTTGTACA | 58.057 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
890 | 939 | 2.489971 | CGTGGTTGACTGGTTGTACAT | 58.510 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
891 | 940 | 3.655486 | CGTGGTTGACTGGTTGTACATA | 58.345 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
892 | 941 | 4.059511 | CGTGGTTGACTGGTTGTACATAA | 58.940 | 43.478 | 0.00 | 0.00 | 0.00 | 1.90 |
893 | 942 | 4.512198 | CGTGGTTGACTGGTTGTACATAAA | 59.488 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
894 | 943 | 5.559417 | CGTGGTTGACTGGTTGTACATAAAC | 60.559 | 44.000 | 0.00 | 0.00 | 0.00 | 2.01 |
895 | 944 | 5.529800 | GTGGTTGACTGGTTGTACATAAACT | 59.470 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
896 | 945 | 5.529430 | TGGTTGACTGGTTGTACATAAACTG | 59.471 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
897 | 946 | 5.529800 | GGTTGACTGGTTGTACATAAACTGT | 59.470 | 40.000 | 0.00 | 0.00 | 42.13 | 3.55 |
898 | 947 | 6.293244 | GGTTGACTGGTTGTACATAAACTGTC | 60.293 | 42.308 | 13.04 | 13.04 | 42.83 | 3.51 |
899 | 948 | 5.919755 | TGACTGGTTGTACATAAACTGTCA | 58.080 | 37.500 | 16.81 | 16.81 | 46.81 | 3.58 |
900 | 949 | 6.530120 | TGACTGGTTGTACATAAACTGTCAT | 58.470 | 36.000 | 16.81 | 0.00 | 45.29 | 3.06 |
901 | 950 | 6.649141 | TGACTGGTTGTACATAAACTGTCATC | 59.351 | 38.462 | 16.81 | 0.00 | 45.29 | 2.92 |
902 | 951 | 6.530120 | ACTGGTTGTACATAAACTGTCATCA | 58.470 | 36.000 | 0.00 | 0.00 | 39.39 | 3.07 |
903 | 952 | 6.995686 | ACTGGTTGTACATAAACTGTCATCAA | 59.004 | 34.615 | 0.00 | 0.00 | 39.39 | 2.57 |
904 | 953 | 7.041372 | ACTGGTTGTACATAAACTGTCATCAAC | 60.041 | 37.037 | 0.00 | 0.00 | 39.95 | 3.18 |
905 | 954 | 6.995686 | TGGTTGTACATAAACTGTCATCAACT | 59.004 | 34.615 | 0.00 | 0.00 | 40.21 | 3.16 |
926 | 975 | 3.799281 | TTTTTCCACACCTTCAGCTTG | 57.201 | 42.857 | 0.00 | 0.00 | 0.00 | 4.01 |
935 | 984 | 3.134804 | ACACCTTCAGCTTGTCTACTGTT | 59.865 | 43.478 | 0.00 | 0.00 | 35.37 | 3.16 |
937 | 986 | 4.576463 | CACCTTCAGCTTGTCTACTGTTTT | 59.424 | 41.667 | 0.00 | 0.00 | 35.37 | 2.43 |
944 | 993 | 6.040504 | TCAGCTTGTCTACTGTTTTCTCTACA | 59.959 | 38.462 | 0.00 | 0.00 | 35.37 | 2.74 |
945 | 994 | 6.364706 | CAGCTTGTCTACTGTTTTCTCTACAG | 59.635 | 42.308 | 0.00 | 0.00 | 46.56 | 2.74 |
947 | 996 | 6.924060 | GCTTGTCTACTGTTTTCTCTACAGAA | 59.076 | 38.462 | 9.74 | 0.00 | 44.52 | 3.02 |
948 | 997 | 7.438459 | GCTTGTCTACTGTTTTCTCTACAGAAA | 59.562 | 37.037 | 9.74 | 0.00 | 45.30 | 2.52 |
975 | 1024 | 9.846248 | ATCTTGTTGATTAATAACTTGCTTCAC | 57.154 | 29.630 | 0.00 | 0.00 | 29.59 | 3.18 |
979 | 1030 | 8.637986 | TGTTGATTAATAACTTGCTTCACCTTT | 58.362 | 29.630 | 0.00 | 0.00 | 0.00 | 3.11 |
985 | 1036 | 3.990318 | ACTTGCTTCACCTTTTACAGC | 57.010 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
1170 | 1221 | 9.658799 | CAGAAGAATGAAGAATTACTAGGTTCA | 57.341 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
1186 | 1237 | 7.119387 | ACTAGGTTCAAATGGAATAAAGGAGG | 58.881 | 38.462 | 0.00 | 0.00 | 37.93 | 4.30 |
1188 | 1239 | 4.466015 | GGTTCAAATGGAATAAAGGAGGCA | 59.534 | 41.667 | 0.00 | 0.00 | 37.93 | 4.75 |
1189 | 1240 | 5.394553 | GGTTCAAATGGAATAAAGGAGGCAG | 60.395 | 44.000 | 0.00 | 0.00 | 37.93 | 4.85 |
1404 | 1736 | 2.229543 | TGCTGCCAAATTCACAGATGAC | 59.770 | 45.455 | 0.00 | 0.00 | 33.38 | 3.06 |
1423 | 1767 | 1.349259 | CGCGTAAGTACCCACTGCAC | 61.349 | 60.000 | 0.00 | 0.00 | 41.68 | 4.57 |
1424 | 1768 | 1.349259 | GCGTAAGTACCCACTGCACG | 61.349 | 60.000 | 7.46 | 7.46 | 42.56 | 5.34 |
1453 | 1807 | 9.586150 | GAATTCAGCTGTATTTTGTGTATATCG | 57.414 | 33.333 | 18.26 | 0.00 | 0.00 | 2.92 |
1523 | 1892 | 6.346838 | GCAGGTTTTTCAACAATGCATTCTAC | 60.347 | 38.462 | 9.53 | 0.00 | 42.53 | 2.59 |
1542 | 1915 | 0.676736 | CGCTAGAGTGGGAGGAATCC | 59.323 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1580 | 1953 | 3.745799 | TCGGCTTGAACTGGATTTGTTA | 58.254 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
1619 | 1992 | 3.246619 | GCTGAAAGTGAACCTAGAGACG | 58.753 | 50.000 | 0.00 | 0.00 | 35.30 | 4.18 |
1692 | 2067 | 0.321653 | ACTGCCGGTTCAGGTTCATC | 60.322 | 55.000 | 12.92 | 0.00 | 38.36 | 2.92 |
1726 | 2107 | 8.432013 | TGGATCTAAAGATTTGAGCTATAGCAA | 58.568 | 33.333 | 26.07 | 12.52 | 38.04 | 3.91 |
1730 | 2111 | 5.747951 | AAGATTTGAGCTATAGCAACAGC | 57.252 | 39.130 | 26.07 | 16.24 | 45.16 | 4.40 |
1877 | 2267 | 8.976986 | AATTCTTTTAGATCTGACATTTGTGC | 57.023 | 30.769 | 5.18 | 0.00 | 0.00 | 4.57 |
1903 | 2293 | 7.509141 | TTCAGATTGCATTAAGTTGTTCTGA | 57.491 | 32.000 | 0.00 | 0.00 | 37.25 | 3.27 |
1934 | 2380 | 5.784177 | TGATTAGTAGGGATTCGATTCTGC | 58.216 | 41.667 | 7.21 | 0.00 | 0.00 | 4.26 |
1942 | 2388 | 4.878397 | AGGGATTCGATTCTGCTTTACTTG | 59.122 | 41.667 | 7.21 | 0.00 | 0.00 | 3.16 |
2016 | 2462 | 1.780309 | TGGGAAACACCAGGTCTGAAT | 59.220 | 47.619 | 0.00 | 0.00 | 41.20 | 2.57 |
2051 | 2537 | 0.108851 | GATTCCAATGCCGCGGTTTT | 60.109 | 50.000 | 28.70 | 17.68 | 0.00 | 2.43 |
2119 | 2606 | 1.918262 | TCCAAGATCTGTGAATGGCCT | 59.082 | 47.619 | 3.32 | 0.00 | 0.00 | 5.19 |
2120 | 2607 | 2.022195 | CCAAGATCTGTGAATGGCCTG | 58.978 | 52.381 | 3.32 | 0.00 | 0.00 | 4.85 |
2126 | 2613 | 0.518636 | CTGTGAATGGCCTGTGTTCG | 59.481 | 55.000 | 3.32 | 0.00 | 0.00 | 3.95 |
2149 | 2636 | 4.813750 | TCTCTGTGCATCTTCTGATTCA | 57.186 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
2170 | 2658 | 3.308053 | CAGTTGAGTCGCATAACAGGATG | 59.692 | 47.826 | 0.00 | 0.00 | 46.00 | 3.51 |
2244 | 2732 | 7.692460 | TTACTTTCCTGAACACGAGACTATA | 57.308 | 36.000 | 0.00 | 0.00 | 0.00 | 1.31 |
2247 | 2735 | 4.978083 | TCCTGAACACGAGACTATAACC | 57.022 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
2253 | 2741 | 2.681848 | ACACGAGACTATAACCACGAGG | 59.318 | 50.000 | 0.00 | 0.00 | 42.21 | 4.63 |
2263 | 2751 | 4.873129 | CCACGAGGGACATCGCCG | 62.873 | 72.222 | 6.27 | 0.00 | 46.60 | 6.46 |
2279 | 2767 | 1.069296 | CGCCGAAGCATGAAAACAGAA | 60.069 | 47.619 | 0.00 | 0.00 | 39.83 | 3.02 |
2285 | 2773 | 4.681744 | GAAGCATGAAAACAGAACCAACA | 58.318 | 39.130 | 0.00 | 0.00 | 0.00 | 3.33 |
2290 | 2778 | 2.680841 | TGAAAACAGAACCAACACCTCG | 59.319 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
2297 | 2785 | 0.179004 | AACCAACACCTCGGATGCAA | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 4.08 |
2302 | 2790 | 2.198827 | ACACCTCGGATGCAAATTCA | 57.801 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2355 | 2843 | 7.558161 | TCATTCGAAACAGATGCTATGAAAT | 57.442 | 32.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2357 | 2845 | 6.983474 | TTCGAAACAGATGCTATGAAATGA | 57.017 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2363 | 2851 | 5.748402 | ACAGATGCTATGAAATGACTGGAA | 58.252 | 37.500 | 0.00 | 0.00 | 0.00 | 3.53 |
2488 | 2994 | 9.651913 | TGTTTTTCTGTCAGCTTTAAATTTCTT | 57.348 | 25.926 | 0.00 | 0.00 | 0.00 | 2.52 |
2560 | 3066 | 1.202580 | AGTTGATATCTGGGCAGTCGC | 60.203 | 52.381 | 3.98 | 0.00 | 37.44 | 5.19 |
2638 | 3144 | 5.303078 | CGATCCATATTAATCGAGAGGGGAT | 59.697 | 44.000 | 9.80 | 0.00 | 45.83 | 3.85 |
2689 | 3208 | 3.454858 | TCCTATGCTTCTCCTCCACTTT | 58.545 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
2697 | 3216 | 4.775236 | CTTCTCCTCCACTTTTCCTATGG | 58.225 | 47.826 | 0.00 | 0.00 | 34.58 | 2.74 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
40 | 41 | 2.568956 | TGCAACTTGAGATCTACCAGCT | 59.431 | 45.455 | 0.00 | 0.00 | 0.00 | 4.24 |
64 | 71 | 9.562226 | AAAGGTAGGTAGGATAGCATTATATGT | 57.438 | 33.333 | 0.00 | 0.00 | 42.67 | 2.29 |
66 | 73 | 9.562226 | ACAAAGGTAGGTAGGATAGCATTATAT | 57.438 | 33.333 | 0.00 | 0.00 | 42.67 | 0.86 |
67 | 74 | 8.967779 | ACAAAGGTAGGTAGGATAGCATTATA | 57.032 | 34.615 | 0.00 | 0.00 | 42.67 | 0.98 |
89 | 96 | 1.134907 | GCCGCACCTAGCTACTTACAA | 60.135 | 52.381 | 0.00 | 0.00 | 42.61 | 2.41 |
90 | 97 | 0.458669 | GCCGCACCTAGCTACTTACA | 59.541 | 55.000 | 0.00 | 0.00 | 42.61 | 2.41 |
94 | 101 | 0.541863 | AAATGCCGCACCTAGCTACT | 59.458 | 50.000 | 0.00 | 0.00 | 42.61 | 2.57 |
95 | 102 | 0.657840 | CAAATGCCGCACCTAGCTAC | 59.342 | 55.000 | 0.00 | 0.00 | 42.61 | 3.58 |
96 | 103 | 0.463654 | CCAAATGCCGCACCTAGCTA | 60.464 | 55.000 | 0.00 | 0.00 | 42.61 | 3.32 |
121 | 128 | 2.432123 | GGGCCGGAATCCCATCTC | 59.568 | 66.667 | 5.05 | 0.00 | 43.37 | 2.75 |
148 | 156 | 2.099592 | AGAGATCAGAGCAAGAAGAGCG | 59.900 | 50.000 | 0.00 | 0.00 | 37.01 | 5.03 |
151 | 159 | 5.202765 | AGATGAGAGATCAGAGCAAGAAGA | 58.797 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
196 | 204 | 3.074369 | TGCGCTCCTTCGGGATCA | 61.074 | 61.111 | 9.73 | 0.00 | 44.11 | 2.92 |
197 | 205 | 2.279784 | CTGCGCTCCTTCGGGATC | 60.280 | 66.667 | 9.73 | 0.00 | 44.11 | 3.36 |
198 | 206 | 3.854669 | CCTGCGCTCCTTCGGGAT | 61.855 | 66.667 | 9.73 | 0.00 | 44.11 | 3.85 |
263 | 271 | 2.807895 | CGAAGTACCCGGCACACG | 60.808 | 66.667 | 0.00 | 2.97 | 43.80 | 4.49 |
273 | 281 | 2.949644 | CCCCAAATCCATTCCGAAGTAC | 59.050 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
279 | 287 | 1.381056 | TGCCCCCAAATCCATTCCG | 60.381 | 57.895 | 0.00 | 0.00 | 0.00 | 4.30 |
282 | 290 | 0.979187 | CAGCTGCCCCCAAATCCATT | 60.979 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
283 | 299 | 1.382146 | CAGCTGCCCCCAAATCCAT | 60.382 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
294 | 310 | 2.119655 | CCTTCCTGATGCAGCTGCC | 61.120 | 63.158 | 34.64 | 21.13 | 41.18 | 4.85 |
382 | 400 | 7.012894 | TGGTAAGGTAATATTTCGCCTCATTTG | 59.987 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
403 | 421 | 9.470399 | GGGTTATTCCTCTTCTATTTTTGGTAA | 57.530 | 33.333 | 0.00 | 0.00 | 36.25 | 2.85 |
463 | 505 | 7.349412 | AGATAAGCAGTAGTACAAAGTAGGG | 57.651 | 40.000 | 2.52 | 0.00 | 0.00 | 3.53 |
465 | 507 | 9.509855 | CAGAAGATAAGCAGTAGTACAAAGTAG | 57.490 | 37.037 | 2.52 | 0.00 | 0.00 | 2.57 |
467 | 509 | 8.123639 | TCAGAAGATAAGCAGTAGTACAAAGT | 57.876 | 34.615 | 2.52 | 0.00 | 0.00 | 2.66 |
468 | 510 | 8.988064 | TTCAGAAGATAAGCAGTAGTACAAAG | 57.012 | 34.615 | 2.52 | 0.00 | 0.00 | 2.77 |
482 | 524 | 4.880120 | CCATCAAGCTGCTTCAGAAGATAA | 59.120 | 41.667 | 12.82 | 0.00 | 32.44 | 1.75 |
493 | 539 | 1.744368 | CTGCGACCATCAAGCTGCT | 60.744 | 57.895 | 0.00 | 0.00 | 0.00 | 4.24 |
494 | 540 | 1.300971 | TTCTGCGACCATCAAGCTGC | 61.301 | 55.000 | 0.00 | 0.00 | 0.00 | 5.25 |
495 | 541 | 1.159285 | TTTCTGCGACCATCAAGCTG | 58.841 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
496 | 542 | 1.808945 | CTTTTCTGCGACCATCAAGCT | 59.191 | 47.619 | 0.00 | 0.00 | 0.00 | 3.74 |
497 | 543 | 1.135575 | CCTTTTCTGCGACCATCAAGC | 60.136 | 52.381 | 0.00 | 0.00 | 0.00 | 4.01 |
498 | 544 | 2.426522 | TCCTTTTCTGCGACCATCAAG | 58.573 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
499 | 545 | 2.559698 | TCCTTTTCTGCGACCATCAA | 57.440 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
500 | 546 | 2.559698 | TTCCTTTTCTGCGACCATCA | 57.440 | 45.000 | 0.00 | 0.00 | 0.00 | 3.07 |
501 | 547 | 3.366374 | CCTTTTCCTTTTCTGCGACCATC | 60.366 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
502 | 548 | 2.558359 | CCTTTTCCTTTTCTGCGACCAT | 59.442 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
503 | 549 | 1.953686 | CCTTTTCCTTTTCTGCGACCA | 59.046 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
504 | 550 | 2.227194 | TCCTTTTCCTTTTCTGCGACC | 58.773 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
505 | 551 | 3.982576 | TTCCTTTTCCTTTTCTGCGAC | 57.017 | 42.857 | 0.00 | 0.00 | 0.00 | 5.19 |
506 | 552 | 6.642707 | TTATTTCCTTTTCCTTTTCTGCGA | 57.357 | 33.333 | 0.00 | 0.00 | 0.00 | 5.10 |
507 | 553 | 5.346011 | GCTTATTTCCTTTTCCTTTTCTGCG | 59.654 | 40.000 | 0.00 | 0.00 | 0.00 | 5.18 |
508 | 554 | 6.223120 | TGCTTATTTCCTTTTCCTTTTCTGC | 58.777 | 36.000 | 0.00 | 0.00 | 0.00 | 4.26 |
509 | 555 | 7.661040 | TCTGCTTATTTCCTTTTCCTTTTCTG | 58.339 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
510 | 556 | 7.839680 | TCTGCTTATTTCCTTTTCCTTTTCT | 57.160 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
511 | 557 | 7.761704 | GGATCTGCTTATTTCCTTTTCCTTTTC | 59.238 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
514 | 560 | 6.256053 | TGGATCTGCTTATTTCCTTTTCCTT | 58.744 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
515 | 561 | 5.831103 | TGGATCTGCTTATTTCCTTTTCCT | 58.169 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
517 | 563 | 7.105241 | ACATGGATCTGCTTATTTCCTTTTC | 57.895 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
521 | 567 | 5.759059 | TCAACATGGATCTGCTTATTTCCT | 58.241 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
527 | 573 | 5.121105 | CAGACATCAACATGGATCTGCTTA | 58.879 | 41.667 | 0.00 | 0.00 | 30.46 | 3.09 |
530 | 576 | 3.064958 | CACAGACATCAACATGGATCTGC | 59.935 | 47.826 | 0.00 | 0.00 | 36.94 | 4.26 |
531 | 577 | 3.626217 | CCACAGACATCAACATGGATCTG | 59.374 | 47.826 | 0.00 | 3.42 | 38.36 | 2.90 |
536 | 582 | 2.205022 | ACCCACAGACATCAACATGG | 57.795 | 50.000 | 0.00 | 0.00 | 33.82 | 3.66 |
541 | 587 | 4.673968 | AGAGTACTACCCACAGACATCAA | 58.326 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
547 | 593 | 5.252586 | AGTTGTAGAGTACTACCCACAGA | 57.747 | 43.478 | 0.00 | 0.00 | 45.81 | 3.41 |
548 | 594 | 5.979288 | AAGTTGTAGAGTACTACCCACAG | 57.021 | 43.478 | 0.00 | 0.00 | 45.81 | 3.66 |
552 | 598 | 7.459795 | AGTACAAAGTTGTAGAGTACTACCC | 57.540 | 40.000 | 4.14 | 0.00 | 45.81 | 3.69 |
558 | 604 | 9.635520 | GCTGATTTAGTACAAAGTTGTAGAGTA | 57.364 | 33.333 | 4.14 | 0.00 | 43.67 | 2.59 |
559 | 605 | 7.328737 | CGCTGATTTAGTACAAAGTTGTAGAGT | 59.671 | 37.037 | 4.14 | 0.00 | 43.67 | 3.24 |
560 | 606 | 7.541091 | TCGCTGATTTAGTACAAAGTTGTAGAG | 59.459 | 37.037 | 4.14 | 0.00 | 43.67 | 2.43 |
561 | 607 | 7.327761 | GTCGCTGATTTAGTACAAAGTTGTAGA | 59.672 | 37.037 | 4.14 | 0.00 | 43.67 | 2.59 |
562 | 608 | 7.445836 | GTCGCTGATTTAGTACAAAGTTGTAG | 58.554 | 38.462 | 4.14 | 0.00 | 43.67 | 2.74 |
563 | 609 | 6.088483 | CGTCGCTGATTTAGTACAAAGTTGTA | 59.912 | 38.462 | 0.00 | 0.00 | 42.35 | 2.41 |
564 | 610 | 5.107607 | CGTCGCTGATTTAGTACAAAGTTGT | 60.108 | 40.000 | 1.75 | 1.75 | 44.86 | 3.32 |
565 | 611 | 5.118050 | TCGTCGCTGATTTAGTACAAAGTTG | 59.882 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
566 | 612 | 5.224888 | TCGTCGCTGATTTAGTACAAAGTT | 58.775 | 37.500 | 0.00 | 0.00 | 0.00 | 2.66 |
567 | 613 | 4.801891 | TCGTCGCTGATTTAGTACAAAGT | 58.198 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
568 | 614 | 4.857588 | ACTCGTCGCTGATTTAGTACAAAG | 59.142 | 41.667 | 0.00 | 0.00 | 0.00 | 2.77 |
569 | 615 | 4.801891 | ACTCGTCGCTGATTTAGTACAAA | 58.198 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
570 | 616 | 4.430137 | ACTCGTCGCTGATTTAGTACAA | 57.570 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
571 | 617 | 5.550232 | TTACTCGTCGCTGATTTAGTACA | 57.450 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
572 | 618 | 7.270793 | CCATATTACTCGTCGCTGATTTAGTAC | 59.729 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
573 | 619 | 7.173735 | TCCATATTACTCGTCGCTGATTTAGTA | 59.826 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
574 | 620 | 6.016527 | TCCATATTACTCGTCGCTGATTTAGT | 60.017 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
575 | 621 | 6.379386 | TCCATATTACTCGTCGCTGATTTAG | 58.621 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
576 | 622 | 6.321848 | TCCATATTACTCGTCGCTGATTTA | 57.678 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
577 | 623 | 5.196341 | TCCATATTACTCGTCGCTGATTT | 57.804 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
578 | 624 | 4.799678 | CTCCATATTACTCGTCGCTGATT | 58.200 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
579 | 625 | 3.366476 | GCTCCATATTACTCGTCGCTGAT | 60.366 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
580 | 626 | 2.031069 | GCTCCATATTACTCGTCGCTGA | 60.031 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
581 | 627 | 2.320367 | GCTCCATATTACTCGTCGCTG | 58.680 | 52.381 | 0.00 | 0.00 | 0.00 | 5.18 |
582 | 628 | 1.069159 | CGCTCCATATTACTCGTCGCT | 60.069 | 52.381 | 0.00 | 0.00 | 0.00 | 4.93 |
583 | 629 | 1.328439 | CGCTCCATATTACTCGTCGC | 58.672 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
584 | 630 | 1.534163 | TCCGCTCCATATTACTCGTCG | 59.466 | 52.381 | 0.00 | 0.00 | 0.00 | 5.12 |
585 | 631 | 3.566523 | CTTCCGCTCCATATTACTCGTC | 58.433 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
586 | 632 | 2.296471 | CCTTCCGCTCCATATTACTCGT | 59.704 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
587 | 633 | 2.557056 | TCCTTCCGCTCCATATTACTCG | 59.443 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
588 | 634 | 3.574826 | ACTCCTTCCGCTCCATATTACTC | 59.425 | 47.826 | 0.00 | 0.00 | 0.00 | 2.59 |
589 | 635 | 3.577919 | ACTCCTTCCGCTCCATATTACT | 58.422 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
590 | 636 | 5.662674 | ATACTCCTTCCGCTCCATATTAC | 57.337 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
591 | 637 | 7.839705 | AGAATATACTCCTTCCGCTCCATATTA | 59.160 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
592 | 638 | 6.670027 | AGAATATACTCCTTCCGCTCCATATT | 59.330 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
593 | 639 | 6.198639 | AGAATATACTCCTTCCGCTCCATAT | 58.801 | 40.000 | 0.00 | 0.00 | 0.00 | 1.78 |
594 | 640 | 5.580998 | AGAATATACTCCTTCCGCTCCATA | 58.419 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
595 | 641 | 4.421131 | AGAATATACTCCTTCCGCTCCAT | 58.579 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
596 | 642 | 3.845860 | AGAATATACTCCTTCCGCTCCA | 58.154 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
597 | 643 | 4.561105 | CAAGAATATACTCCTTCCGCTCC | 58.439 | 47.826 | 0.00 | 0.00 | 0.00 | 4.70 |
598 | 644 | 3.991121 | GCAAGAATATACTCCTTCCGCTC | 59.009 | 47.826 | 0.00 | 0.00 | 0.00 | 5.03 |
599 | 645 | 3.553096 | CGCAAGAATATACTCCTTCCGCT | 60.553 | 47.826 | 0.00 | 0.00 | 43.02 | 5.52 |
600 | 646 | 2.731976 | CGCAAGAATATACTCCTTCCGC | 59.268 | 50.000 | 0.00 | 0.00 | 43.02 | 5.54 |
601 | 647 | 3.736252 | CACGCAAGAATATACTCCTTCCG | 59.264 | 47.826 | 0.00 | 0.00 | 43.62 | 4.30 |
602 | 648 | 4.694339 | ACACGCAAGAATATACTCCTTCC | 58.306 | 43.478 | 0.00 | 0.00 | 43.62 | 3.46 |
603 | 649 | 7.948278 | AATACACGCAAGAATATACTCCTTC | 57.052 | 36.000 | 0.00 | 0.00 | 43.62 | 3.46 |
604 | 650 | 7.985184 | TCAAATACACGCAAGAATATACTCCTT | 59.015 | 33.333 | 0.00 | 0.00 | 43.62 | 3.36 |
605 | 651 | 7.438459 | GTCAAATACACGCAAGAATATACTCCT | 59.562 | 37.037 | 0.00 | 0.00 | 43.62 | 3.69 |
606 | 652 | 7.223971 | TGTCAAATACACGCAAGAATATACTCC | 59.776 | 37.037 | 0.00 | 0.00 | 43.62 | 3.85 |
607 | 653 | 8.126871 | TGTCAAATACACGCAAGAATATACTC | 57.873 | 34.615 | 0.00 | 0.00 | 43.62 | 2.59 |
625 | 671 | 5.645497 | GCATTCTCTAAGGAGTGTGTCAAAT | 59.355 | 40.000 | 0.00 | 0.00 | 40.29 | 2.32 |
627 | 673 | 4.563580 | GGCATTCTCTAAGGAGTGTGTCAA | 60.564 | 45.833 | 0.00 | 0.00 | 40.29 | 3.18 |
630 | 676 | 2.906389 | TGGCATTCTCTAAGGAGTGTGT | 59.094 | 45.455 | 0.00 | 0.00 | 40.29 | 3.72 |
631 | 677 | 3.616956 | TGGCATTCTCTAAGGAGTGTG | 57.383 | 47.619 | 0.00 | 0.00 | 40.29 | 3.82 |
632 | 678 | 3.840666 | TCTTGGCATTCTCTAAGGAGTGT | 59.159 | 43.478 | 0.00 | 0.00 | 40.29 | 3.55 |
633 | 679 | 4.081198 | AGTCTTGGCATTCTCTAAGGAGTG | 60.081 | 45.833 | 0.00 | 0.00 | 40.29 | 3.51 |
634 | 680 | 4.100373 | AGTCTTGGCATTCTCTAAGGAGT | 58.900 | 43.478 | 0.00 | 0.00 | 40.29 | 3.85 |
635 | 681 | 4.751767 | AGTCTTGGCATTCTCTAAGGAG | 57.248 | 45.455 | 0.00 | 0.00 | 40.73 | 3.69 |
636 | 682 | 4.323792 | CCAAGTCTTGGCATTCTCTAAGGA | 60.324 | 45.833 | 18.66 | 0.00 | 45.17 | 3.36 |
637 | 683 | 3.944015 | CCAAGTCTTGGCATTCTCTAAGG | 59.056 | 47.826 | 18.66 | 0.00 | 45.17 | 2.69 |
656 | 702 | 6.325919 | AGCAATCGAAAATACAGTTTCCAA | 57.674 | 33.333 | 0.00 | 0.00 | 34.59 | 3.53 |
657 | 703 | 5.957842 | AGCAATCGAAAATACAGTTTCCA | 57.042 | 34.783 | 0.00 | 0.00 | 34.59 | 3.53 |
677 | 723 | 2.357009 | CCCTCTCATTGCACAACATAGC | 59.643 | 50.000 | 0.00 | 0.00 | 0.00 | 2.97 |
678 | 724 | 2.947652 | CCCCTCTCATTGCACAACATAG | 59.052 | 50.000 | 0.00 | 0.00 | 0.00 | 2.23 |
697 | 743 | 1.197721 | CACGTTGCTCTGAATTGACCC | 59.802 | 52.381 | 0.00 | 0.00 | 0.00 | 4.46 |
699 | 745 | 2.349817 | CCACACGTTGCTCTGAATTGAC | 60.350 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
701 | 747 | 1.872952 | TCCACACGTTGCTCTGAATTG | 59.127 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
706 | 752 | 0.317160 | TACCTCCACACGTTGCTCTG | 59.683 | 55.000 | 0.00 | 0.00 | 0.00 | 3.35 |
711 | 757 | 1.000955 | AGAAGCTACCTCCACACGTTG | 59.999 | 52.381 | 0.00 | 0.00 | 0.00 | 4.10 |
712 | 758 | 1.339097 | AGAAGCTACCTCCACACGTT | 58.661 | 50.000 | 0.00 | 0.00 | 0.00 | 3.99 |
714 | 760 | 3.587797 | TTTAGAAGCTACCTCCACACG | 57.412 | 47.619 | 0.00 | 0.00 | 0.00 | 4.49 |
734 | 780 | 7.228706 | CGGAGCCAAACCAAGAATATACTAAAT | 59.771 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
735 | 781 | 6.540914 | CGGAGCCAAACCAAGAATATACTAAA | 59.459 | 38.462 | 0.00 | 0.00 | 0.00 | 1.85 |
736 | 782 | 6.053005 | CGGAGCCAAACCAAGAATATACTAA | 58.947 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
737 | 783 | 5.607477 | CGGAGCCAAACCAAGAATATACTA | 58.393 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
738 | 784 | 4.451900 | CGGAGCCAAACCAAGAATATACT | 58.548 | 43.478 | 0.00 | 0.00 | 0.00 | 2.12 |
739 | 785 | 4.813296 | CGGAGCCAAACCAAGAATATAC | 57.187 | 45.455 | 0.00 | 0.00 | 0.00 | 1.47 |
763 | 809 | 2.033550 | AGCTGCGTCTATTCTCGTAAGG | 59.966 | 50.000 | 0.00 | 0.00 | 38.47 | 2.69 |
788 | 836 | 5.049828 | GGATTATAGCATTGCACCAAAACC | 58.950 | 41.667 | 11.91 | 4.35 | 0.00 | 3.27 |
805 | 853 | 6.279813 | TGAAGCTAATTTCCCCAGGATTAT | 57.720 | 37.500 | 0.00 | 0.00 | 0.00 | 1.28 |
809 | 857 | 2.357154 | GCTGAAGCTAATTTCCCCAGGA | 60.357 | 50.000 | 0.00 | 0.00 | 38.21 | 3.86 |
820 | 869 | 2.906389 | TGAAGAGGAAGGCTGAAGCTAA | 59.094 | 45.455 | 1.74 | 0.00 | 41.70 | 3.09 |
823 | 872 | 2.287769 | GATGAAGAGGAAGGCTGAAGC | 58.712 | 52.381 | 0.00 | 0.00 | 41.14 | 3.86 |
826 | 875 | 1.478510 | GACGATGAAGAGGAAGGCTGA | 59.521 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
841 | 890 | 8.511604 | AAATTTAAAGATGGACATCAGACGAT | 57.488 | 30.769 | 14.16 | 1.11 | 40.22 | 3.73 |
842 | 891 | 7.824289 | AGAAATTTAAAGATGGACATCAGACGA | 59.176 | 33.333 | 14.16 | 0.00 | 40.22 | 4.20 |
843 | 892 | 7.907045 | CAGAAATTTAAAGATGGACATCAGACG | 59.093 | 37.037 | 14.16 | 0.00 | 40.22 | 4.18 |
844 | 893 | 7.699812 | GCAGAAATTTAAAGATGGACATCAGAC | 59.300 | 37.037 | 14.16 | 0.00 | 40.22 | 3.51 |
845 | 894 | 7.414429 | CGCAGAAATTTAAAGATGGACATCAGA | 60.414 | 37.037 | 14.16 | 0.00 | 40.22 | 3.27 |
846 | 895 | 6.690098 | CGCAGAAATTTAAAGATGGACATCAG | 59.310 | 38.462 | 14.16 | 0.00 | 40.22 | 2.90 |
847 | 896 | 6.150976 | ACGCAGAAATTTAAAGATGGACATCA | 59.849 | 34.615 | 14.16 | 0.00 | 40.22 | 3.07 |
849 | 898 | 6.324819 | CACGCAGAAATTTAAAGATGGACAT | 58.675 | 36.000 | 0.00 | 0.00 | 0.00 | 3.06 |
850 | 899 | 5.335583 | CCACGCAGAAATTTAAAGATGGACA | 60.336 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
851 | 900 | 5.095490 | CCACGCAGAAATTTAAAGATGGAC | 58.905 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
852 | 901 | 4.764823 | ACCACGCAGAAATTTAAAGATGGA | 59.235 | 37.500 | 14.13 | 0.00 | 0.00 | 3.41 |
853 | 902 | 5.059404 | ACCACGCAGAAATTTAAAGATGG | 57.941 | 39.130 | 8.13 | 8.13 | 0.00 | 3.51 |
854 | 903 | 6.088085 | GTCAACCACGCAGAAATTTAAAGATG | 59.912 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
855 | 904 | 6.016276 | AGTCAACCACGCAGAAATTTAAAGAT | 60.016 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
857 | 906 | 5.399301 | CAGTCAACCACGCAGAAATTTAAAG | 59.601 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
859 | 908 | 4.261405 | CCAGTCAACCACGCAGAAATTTAA | 60.261 | 41.667 | 0.00 | 0.00 | 0.00 | 1.52 |
860 | 909 | 3.252215 | CCAGTCAACCACGCAGAAATTTA | 59.748 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
861 | 910 | 2.034558 | CCAGTCAACCACGCAGAAATTT | 59.965 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
862 | 911 | 1.608590 | CCAGTCAACCACGCAGAAATT | 59.391 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
863 | 912 | 1.238439 | CCAGTCAACCACGCAGAAAT | 58.762 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
864 | 913 | 0.107410 | ACCAGTCAACCACGCAGAAA | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
865 | 914 | 0.107410 | AACCAGTCAACCACGCAGAA | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
866 | 915 | 0.813610 | CAACCAGTCAACCACGCAGA | 60.814 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
867 | 916 | 1.095228 | ACAACCAGTCAACCACGCAG | 61.095 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 |
868 | 917 | 0.178301 | TACAACCAGTCAACCACGCA | 59.822 | 50.000 | 0.00 | 0.00 | 0.00 | 5.24 |
869 | 918 | 0.584876 | GTACAACCAGTCAACCACGC | 59.415 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
870 | 919 | 1.942677 | TGTACAACCAGTCAACCACG | 58.057 | 50.000 | 0.00 | 0.00 | 0.00 | 4.94 |
871 | 920 | 5.529800 | AGTTTATGTACAACCAGTCAACCAC | 59.470 | 40.000 | 0.00 | 0.00 | 0.00 | 4.16 |
872 | 921 | 5.529430 | CAGTTTATGTACAACCAGTCAACCA | 59.471 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
873 | 922 | 5.529800 | ACAGTTTATGTACAACCAGTCAACC | 59.470 | 40.000 | 0.00 | 0.00 | 41.60 | 3.77 |
874 | 923 | 6.259167 | TGACAGTTTATGTACAACCAGTCAAC | 59.741 | 38.462 | 14.66 | 2.47 | 44.17 | 3.18 |
875 | 924 | 6.350103 | TGACAGTTTATGTACAACCAGTCAA | 58.650 | 36.000 | 14.66 | 4.74 | 44.17 | 3.18 |
876 | 925 | 5.919755 | TGACAGTTTATGTACAACCAGTCA | 58.080 | 37.500 | 13.69 | 13.69 | 44.17 | 3.41 |
877 | 926 | 6.649141 | TGATGACAGTTTATGTACAACCAGTC | 59.351 | 38.462 | 0.00 | 6.10 | 44.17 | 3.51 |
878 | 927 | 6.530120 | TGATGACAGTTTATGTACAACCAGT | 58.470 | 36.000 | 0.00 | 0.00 | 44.17 | 4.00 |
879 | 928 | 7.173218 | AGTTGATGACAGTTTATGTACAACCAG | 59.827 | 37.037 | 0.00 | 0.00 | 44.17 | 4.00 |
880 | 929 | 6.995686 | AGTTGATGACAGTTTATGTACAACCA | 59.004 | 34.615 | 0.00 | 0.00 | 44.17 | 3.67 |
881 | 930 | 7.435068 | AGTTGATGACAGTTTATGTACAACC | 57.565 | 36.000 | 0.00 | 0.00 | 44.17 | 3.77 |
882 | 931 | 9.730420 | AAAAGTTGATGACAGTTTATGTACAAC | 57.270 | 29.630 | 0.00 | 0.00 | 44.17 | 3.32 |
910 | 959 | 1.131638 | AGACAAGCTGAAGGTGTGGA | 58.868 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
914 | 963 | 3.393089 | ACAGTAGACAAGCTGAAGGTG | 57.607 | 47.619 | 0.00 | 0.00 | 36.62 | 4.00 |
922 | 971 | 6.448006 | TCTGTAGAGAAAACAGTAGACAAGC | 58.552 | 40.000 | 3.40 | 0.00 | 43.88 | 4.01 |
923 | 972 | 8.873215 | TTTCTGTAGAGAAAACAGTAGACAAG | 57.127 | 34.615 | 12.35 | 0.00 | 43.79 | 3.16 |
949 | 998 | 9.846248 | GTGAAGCAAGTTATTAATCAACAAGAT | 57.154 | 29.630 | 0.00 | 0.00 | 39.09 | 2.40 |
950 | 999 | 8.296713 | GGTGAAGCAAGTTATTAATCAACAAGA | 58.703 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
951 | 1000 | 8.299570 | AGGTGAAGCAAGTTATTAATCAACAAG | 58.700 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
954 | 1003 | 9.476202 | AAAAGGTGAAGCAAGTTATTAATCAAC | 57.524 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
960 | 1009 | 7.229707 | TGCTGTAAAAGGTGAAGCAAGTTATTA | 59.770 | 33.333 | 0.00 | 0.00 | 40.72 | 0.98 |
962 | 1011 | 5.534654 | TGCTGTAAAAGGTGAAGCAAGTTAT | 59.465 | 36.000 | 0.00 | 0.00 | 40.72 | 1.89 |
963 | 1012 | 4.884744 | TGCTGTAAAAGGTGAAGCAAGTTA | 59.115 | 37.500 | 0.00 | 0.00 | 40.72 | 2.24 |
965 | 1014 | 3.066760 | GTGCTGTAAAAGGTGAAGCAAGT | 59.933 | 43.478 | 0.00 | 0.00 | 44.82 | 3.16 |
966 | 1015 | 3.316308 | AGTGCTGTAAAAGGTGAAGCAAG | 59.684 | 43.478 | 0.00 | 0.00 | 44.82 | 4.01 |
967 | 1016 | 3.287222 | AGTGCTGTAAAAGGTGAAGCAA | 58.713 | 40.909 | 0.00 | 0.00 | 44.82 | 3.91 |
969 | 1018 | 3.990318 | AAGTGCTGTAAAAGGTGAAGC | 57.010 | 42.857 | 0.00 | 0.00 | 0.00 | 3.86 |
972 | 1021 | 5.700832 | CAGACATAAGTGCTGTAAAAGGTGA | 59.299 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
973 | 1022 | 5.617751 | GCAGACATAAGTGCTGTAAAAGGTG | 60.618 | 44.000 | 0.00 | 0.00 | 36.71 | 4.00 |
974 | 1023 | 4.455877 | GCAGACATAAGTGCTGTAAAAGGT | 59.544 | 41.667 | 0.00 | 0.00 | 36.71 | 3.50 |
975 | 1024 | 4.142600 | GGCAGACATAAGTGCTGTAAAAGG | 60.143 | 45.833 | 0.00 | 0.00 | 39.76 | 3.11 |
979 | 1030 | 3.981071 | AGGCAGACATAAGTGCTGTAA | 57.019 | 42.857 | 0.00 | 0.00 | 39.76 | 2.41 |
985 | 1036 | 4.100035 | TGACTCCATAGGCAGACATAAGTG | 59.900 | 45.833 | 0.00 | 0.00 | 35.10 | 3.16 |
1170 | 1221 | 3.033909 | GGCTGCCTCCTTTATTCCATTT | 58.966 | 45.455 | 12.43 | 0.00 | 0.00 | 2.32 |
1186 | 1237 | 0.458669 | CCATGAAAGATGGTGGCTGC | 59.541 | 55.000 | 0.00 | 0.00 | 34.56 | 5.25 |
1404 | 1736 | 1.080366 | TGCAGTGGGTACTTACGCG | 60.080 | 57.895 | 3.53 | 3.53 | 41.48 | 6.01 |
1423 | 1767 | 4.853196 | CACAAAATACAGCTGAATTCCACG | 59.147 | 41.667 | 23.35 | 4.06 | 0.00 | 4.94 |
1424 | 1768 | 5.772521 | ACACAAAATACAGCTGAATTCCAC | 58.227 | 37.500 | 23.35 | 0.00 | 0.00 | 4.02 |
1427 | 1771 | 9.586150 | CGATATACACAAAATACAGCTGAATTC | 57.414 | 33.333 | 23.35 | 0.00 | 0.00 | 2.17 |
1523 | 1892 | 0.676736 | GGATTCCTCCCACTCTAGCG | 59.323 | 60.000 | 0.00 | 0.00 | 35.28 | 4.26 |
1542 | 1915 | 1.190984 | CCGATTCATCTCGATTGTGCG | 59.809 | 52.381 | 0.00 | 0.00 | 41.12 | 5.34 |
1580 | 1953 | 5.441718 | TCAGCCTGAAGTCCAGATTAAAT | 57.558 | 39.130 | 0.00 | 0.00 | 45.78 | 1.40 |
1692 | 2067 | 7.307493 | TCAAATCTTTAGATCCATTGACACG | 57.693 | 36.000 | 0.00 | 0.00 | 32.75 | 4.49 |
1730 | 2111 | 2.170985 | CAAAACTCGTCGGCGCTG | 59.829 | 61.111 | 10.86 | 10.86 | 38.14 | 5.18 |
1775 | 2165 | 1.153005 | GCATCCTTGGAGAGCCTGG | 60.153 | 63.158 | 5.82 | 0.00 | 34.31 | 4.45 |
1877 | 2267 | 8.024865 | TCAGAACAACTTAATGCAATCTGAATG | 58.975 | 33.333 | 0.00 | 0.00 | 36.11 | 2.67 |
1903 | 2293 | 5.396436 | CGAATCCCTACTAATCAAACACCCT | 60.396 | 44.000 | 0.00 | 0.00 | 0.00 | 4.34 |
1942 | 2388 | 6.416750 | GGTTTGCAAGAATTACAGTGTTACAC | 59.583 | 38.462 | 7.50 | 7.50 | 34.10 | 2.90 |
2016 | 2462 | 7.229306 | GCATTGGAATCACAGGACTGAATAATA | 59.771 | 37.037 | 6.29 | 0.00 | 0.00 | 0.98 |
2051 | 2537 | 1.264749 | ACTTGGCAGCAGATCCGGTA | 61.265 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2062 | 2548 | 1.298859 | GCCGACAGGTTACTTGGCAG | 61.299 | 60.000 | 0.38 | 0.00 | 42.03 | 4.85 |
2119 | 2606 | 2.135139 | GATGCACAGAGAACGAACACA | 58.865 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
2120 | 2607 | 2.408050 | AGATGCACAGAGAACGAACAC | 58.592 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
2126 | 2613 | 4.934001 | TGAATCAGAAGATGCACAGAGAAC | 59.066 | 41.667 | 0.00 | 0.00 | 34.77 | 3.01 |
2149 | 2636 | 3.055819 | ACATCCTGTTATGCGACTCAACT | 60.056 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
2244 | 2732 | 2.264794 | GCGATGTCCCTCGTGGTT | 59.735 | 61.111 | 2.33 | 0.00 | 40.73 | 3.67 |
2247 | 2735 | 3.350909 | TTCGGCGATGTCCCTCGTG | 62.351 | 63.158 | 11.76 | 0.00 | 40.73 | 4.35 |
2253 | 2741 | 1.089481 | TTCATGCTTCGGCGATGTCC | 61.089 | 55.000 | 21.59 | 8.66 | 45.37 | 4.02 |
2263 | 2751 | 4.504097 | GTGTTGGTTCTGTTTTCATGCTTC | 59.496 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
2279 | 2767 | 0.179004 | TTTGCATCCGAGGTGTTGGT | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2285 | 2773 | 2.749621 | GACTTGAATTTGCATCCGAGGT | 59.250 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
2290 | 2778 | 8.814235 | CAAATATTCTGACTTGAATTTGCATCC | 58.186 | 33.333 | 0.00 | 0.00 | 37.73 | 3.51 |
2302 | 2790 | 8.043113 | TGCTACATCACTCAAATATTCTGACTT | 58.957 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
2332 | 2820 | 7.375280 | GTCATTTCATAGCATCTGTTTCGAATG | 59.625 | 37.037 | 0.00 | 0.00 | 0.00 | 2.67 |
2363 | 2851 | 1.103398 | GTGTTGAAGCTGCTGGTGGT | 61.103 | 55.000 | 1.35 | 0.00 | 0.00 | 4.16 |
2369 | 2857 | 2.116125 | GGGGGTGTTGAAGCTGCT | 59.884 | 61.111 | 0.00 | 0.00 | 0.00 | 4.24 |
2488 | 2994 | 3.780294 | AGGACTGCCCAGATAACACATAA | 59.220 | 43.478 | 1.69 | 0.00 | 37.41 | 1.90 |
2560 | 3066 | 6.145535 | GTGACTAGAATTGTGGCTTTCTTTG | 58.854 | 40.000 | 0.00 | 0.00 | 34.22 | 2.77 |
2638 | 3144 | 2.623878 | TCCTTTCCTTGCACGTACAA | 57.376 | 45.000 | 0.45 | 0.45 | 0.00 | 2.41 |
2675 | 3193 | 4.471386 | TCCATAGGAAAAGTGGAGGAGAAG | 59.529 | 45.833 | 0.00 | 0.00 | 37.12 | 2.85 |
2678 | 3197 | 4.410228 | TGATCCATAGGAAAAGTGGAGGAG | 59.590 | 45.833 | 0.00 | 0.00 | 44.59 | 3.69 |
2689 | 3208 | 7.004086 | ACAAGTTGTTCTTTGATCCATAGGAA | 58.996 | 34.615 | 1.64 | 0.00 | 32.29 | 3.36 |
2697 | 3216 | 5.296780 | TCTGGTGACAAGTTGTTCTTTGATC | 59.703 | 40.000 | 10.45 | 0.00 | 42.06 | 2.92 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.