Multiple sequence alignment - TraesCS1D01G244500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G244500 chr1D 100.000 2696 0 0 1 2696 335286142 335288837 0.000000e+00 4979.0
1 TraesCS1D01G244500 chr1B 93.896 2359 84 20 135 2469 451133422 451135744 0.000000e+00 3504.0
2 TraesCS1D01G244500 chr1B 92.340 235 14 4 2465 2696 451521877 451522110 5.560000e-87 331.0
3 TraesCS1D01G244500 chr1A 92.214 2376 88 41 146 2494 432851285 432853590 0.000000e+00 3273.0
4 TraesCS1D01G244500 chr2D 88.333 240 28 0 1039 1278 595659326 595659087 3.400000e-74 289.0
5 TraesCS1D01G244500 chr2A 87.083 240 31 0 1039 1278 729627367 729627128 3.420000e-69 272.0
6 TraesCS1D01G244500 chr2B 87.288 236 30 0 1040 1275 723962805 723963040 1.230000e-68 270.0
7 TraesCS1D01G244500 chr4B 87.273 55 6 1 2515 2568 307512437 307512383 8.060000e-06 62.1
8 TraesCS1D01G244500 chr4D 85.714 56 7 1 2509 2563 170804838 170804893 1.040000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G244500 chr1D 335286142 335288837 2695 False 4979 4979 100.000 1 2696 1 chr1D.!!$F1 2695
1 TraesCS1D01G244500 chr1B 451133422 451135744 2322 False 3504 3504 93.896 135 2469 1 chr1B.!!$F1 2334
2 TraesCS1D01G244500 chr1A 432851285 432853590 2305 False 3273 3273 92.214 146 2494 1 chr1A.!!$F1 2348

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.036952 CCTGTGCTCCCAGTACTGTG 60.037 60.0 21.18 10.7 31.77 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 1864 0.459899 ATGCTACTGCGACGATGGAA 59.54 50.0 0.0 0.0 43.34 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.590720 AAAAACCGTACTTTTCCGTCG 57.409 42.857 0.00 0.00 0.00 5.12
35 36 2.507339 AAACCGTACTTTTCCGTCGA 57.493 45.000 0.00 0.00 0.00 4.20
36 37 2.730550 AACCGTACTTTTCCGTCGAT 57.269 45.000 0.00 0.00 0.00 3.59
37 38 3.848272 AACCGTACTTTTCCGTCGATA 57.152 42.857 0.00 0.00 0.00 2.92
38 39 4.376340 AACCGTACTTTTCCGTCGATAT 57.624 40.909 0.00 0.00 0.00 1.63
39 40 5.499139 AACCGTACTTTTCCGTCGATATA 57.501 39.130 0.00 0.00 0.00 0.86
40 41 5.100751 ACCGTACTTTTCCGTCGATATAG 57.899 43.478 0.00 0.00 0.00 1.31
41 42 4.023707 ACCGTACTTTTCCGTCGATATAGG 60.024 45.833 0.00 0.00 0.00 2.57
42 43 4.214119 CCGTACTTTTCCGTCGATATAGGA 59.786 45.833 0.00 0.00 0.00 2.94
43 44 5.277974 CCGTACTTTTCCGTCGATATAGGAA 60.278 44.000 9.53 9.53 41.76 3.36
47 48 4.931661 TTTCCGTCGATATAGGAAAGCT 57.068 40.909 17.45 0.00 45.75 3.74
48 49 4.500603 TTCCGTCGATATAGGAAAGCTC 57.499 45.455 10.71 0.00 40.67 4.09
49 50 2.818432 TCCGTCGATATAGGAAAGCTCC 59.182 50.000 0.00 0.00 42.81 4.70
57 58 4.310288 GGAAAGCTCCTGTGCTCC 57.690 61.111 0.00 0.00 43.24 4.70
58 59 1.377856 GGAAAGCTCCTGTGCTCCC 60.378 63.158 0.00 0.00 43.24 4.30
59 60 1.376466 GAAAGCTCCTGTGCTCCCA 59.624 57.895 0.00 0.00 43.24 4.37
60 61 0.676151 GAAAGCTCCTGTGCTCCCAG 60.676 60.000 0.00 0.00 43.24 4.45
61 62 1.422161 AAAGCTCCTGTGCTCCCAGT 61.422 55.000 0.00 0.00 43.24 4.00
62 63 0.545309 AAGCTCCTGTGCTCCCAGTA 60.545 55.000 0.00 0.00 43.24 2.74
63 64 1.219393 GCTCCTGTGCTCCCAGTAC 59.781 63.158 0.00 0.00 0.00 2.73
64 65 1.261238 GCTCCTGTGCTCCCAGTACT 61.261 60.000 0.00 0.00 31.77 2.73
65 66 0.534412 CTCCTGTGCTCCCAGTACTG 59.466 60.000 16.34 16.34 31.77 2.74
66 67 0.178932 TCCTGTGCTCCCAGTACTGT 60.179 55.000 21.18 0.00 31.77 3.55
67 68 0.036952 CCTGTGCTCCCAGTACTGTG 60.037 60.000 21.18 10.70 31.77 3.66
68 69 0.681733 CTGTGCTCCCAGTACTGTGT 59.318 55.000 21.18 0.00 31.77 3.72
69 70 0.392706 TGTGCTCCCAGTACTGTGTG 59.607 55.000 21.18 12.11 31.77 3.82
70 71 0.393077 GTGCTCCCAGTACTGTGTGT 59.607 55.000 21.18 0.00 0.00 3.72
71 72 1.616865 GTGCTCCCAGTACTGTGTGTA 59.383 52.381 21.18 8.03 0.00 2.90
72 73 2.233922 GTGCTCCCAGTACTGTGTGTAT 59.766 50.000 21.18 0.00 33.23 2.29
73 74 2.903784 TGCTCCCAGTACTGTGTGTATT 59.096 45.455 21.18 0.00 33.23 1.89
74 75 3.326588 TGCTCCCAGTACTGTGTGTATTT 59.673 43.478 21.18 0.00 33.23 1.40
75 76 4.202419 TGCTCCCAGTACTGTGTGTATTTT 60.202 41.667 21.18 0.00 33.23 1.82
76 77 4.760204 GCTCCCAGTACTGTGTGTATTTTT 59.240 41.667 21.18 0.00 33.23 1.94
77 78 5.334879 GCTCCCAGTACTGTGTGTATTTTTG 60.335 44.000 21.18 1.61 33.23 2.44
78 79 5.067273 TCCCAGTACTGTGTGTATTTTTGG 58.933 41.667 21.18 10.49 33.23 3.28
79 80 4.320935 CCCAGTACTGTGTGTATTTTTGGC 60.321 45.833 21.18 0.00 33.23 4.52
80 81 4.277174 CCAGTACTGTGTGTATTTTTGGCA 59.723 41.667 21.18 0.00 33.23 4.92
81 82 5.221145 CCAGTACTGTGTGTATTTTTGGCAA 60.221 40.000 21.18 0.00 33.23 4.52
82 83 5.685511 CAGTACTGTGTGTATTTTTGGCAAC 59.314 40.000 15.06 0.00 33.23 4.17
83 84 3.701241 ACTGTGTGTATTTTTGGCAACG 58.299 40.909 0.00 0.00 42.51 4.10
84 85 3.378742 ACTGTGTGTATTTTTGGCAACGA 59.621 39.130 0.00 0.00 42.51 3.85
85 86 4.142359 ACTGTGTGTATTTTTGGCAACGAA 60.142 37.500 0.00 0.00 42.51 3.85
98 99 8.888579 TTTTGGCAACGAAATTATTTAGGAAA 57.111 26.923 0.00 0.00 45.12 3.13
99 100 8.888579 TTTGGCAACGAAATTATTTAGGAAAA 57.111 26.923 0.00 0.00 36.89 2.29
100 101 8.888579 TTGGCAACGAAATTATTTAGGAAAAA 57.111 26.923 0.00 0.00 42.51 1.94
101 102 8.300495 TGGCAACGAAATTATTTAGGAAAAAC 57.700 30.769 3.13 0.00 42.51 2.43
102 103 7.385478 TGGCAACGAAATTATTTAGGAAAAACC 59.615 33.333 3.13 0.00 42.51 3.27
103 104 7.385478 GGCAACGAAATTATTTAGGAAAAACCA 59.615 33.333 3.13 0.00 42.04 3.67
104 105 8.931775 GCAACGAAATTATTTAGGAAAAACCAT 58.068 29.630 3.13 0.00 42.04 3.55
119 120 7.920682 AGGAAAAACCATATACGATGATTTTGC 59.079 33.333 0.00 0.42 42.04 3.68
120 121 7.169140 GGAAAAACCATATACGATGATTTTGCC 59.831 37.037 0.00 0.00 38.79 4.52
121 122 5.705609 AACCATATACGATGATTTTGCCC 57.294 39.130 0.00 0.00 0.00 5.36
122 123 4.985538 ACCATATACGATGATTTTGCCCT 58.014 39.130 0.00 0.00 0.00 5.19
123 124 6.121776 ACCATATACGATGATTTTGCCCTA 57.878 37.500 0.00 0.00 0.00 3.53
124 125 6.539173 ACCATATACGATGATTTTGCCCTAA 58.461 36.000 0.00 0.00 0.00 2.69
125 126 7.001674 ACCATATACGATGATTTTGCCCTAAA 58.998 34.615 0.00 0.00 0.00 1.85
126 127 7.504238 ACCATATACGATGATTTTGCCCTAAAA 59.496 33.333 0.00 0.00 42.10 1.52
127 128 8.356657 CCATATACGATGATTTTGCCCTAAAAA 58.643 33.333 0.00 0.00 41.29 1.94
177 178 2.560504 CCACAAAAACCTGGGCTTTTC 58.439 47.619 0.00 0.00 0.00 2.29
258 259 3.007398 AGCAGGAACCTTTCTGTAGAGTG 59.993 47.826 0.00 0.00 33.81 3.51
330 331 1.679680 CATGAGCAATACAAGGCCAGG 59.320 52.381 5.01 0.00 0.00 4.45
415 424 3.481903 CACGTGCGAGCGCTCAAT 61.482 61.111 34.69 13.48 42.51 2.57
471 480 0.672342 CCAAATCCTAGCTGCCATGC 59.328 55.000 0.00 0.00 0.00 4.06
522 531 1.197721 CGACCCTGCACAAAAAGCTAG 59.802 52.381 0.00 0.00 0.00 3.42
712 734 4.717629 CGCTGACCAAGGCGTCGA 62.718 66.667 0.00 0.00 45.34 4.20
963 987 1.349357 GCCTCCCAGTCCCAGATATTC 59.651 57.143 0.00 0.00 0.00 1.75
964 988 1.981495 CCTCCCAGTCCCAGATATTCC 59.019 57.143 0.00 0.00 0.00 3.01
965 989 2.694397 CTCCCAGTCCCAGATATTCCA 58.306 52.381 0.00 0.00 0.00 3.53
966 990 3.048600 CTCCCAGTCCCAGATATTCCAA 58.951 50.000 0.00 0.00 0.00 3.53
967 991 2.777692 TCCCAGTCCCAGATATTCCAAC 59.222 50.000 0.00 0.00 0.00 3.77
968 992 2.509548 CCCAGTCCCAGATATTCCAACA 59.490 50.000 0.00 0.00 0.00 3.33
979 1003 5.937540 CAGATATTCCAACACCAACACACTA 59.062 40.000 0.00 0.00 0.00 2.74
987 1011 3.390135 ACACCAACACACTAATCGTCAG 58.610 45.455 0.00 0.00 0.00 3.51
996 1025 6.116806 ACACACTAATCGTCAGTCTATCTCT 58.883 40.000 0.00 0.00 0.00 3.10
1524 1556 2.757077 CCCAAGGCGGAGGACTTT 59.243 61.111 0.00 0.00 38.83 2.66
1605 1637 0.761187 GCATCTGGGACCTCAGCATA 59.239 55.000 5.37 0.00 34.91 3.14
1614 1646 0.621571 ACCTCAGCATAGCCCCTGAA 60.622 55.000 0.00 0.00 37.61 3.02
1947 1979 7.308830 GGGTAATGAAATGATCAGTCTAATGGC 60.309 40.741 0.09 0.00 42.53 4.40
2277 2335 2.168621 CGTGTGCGAGAACAAGCG 59.831 61.111 0.00 0.00 41.33 4.68
2303 2361 7.490962 TCATGTCCACCGTATAAAATGAATC 57.509 36.000 0.00 0.00 0.00 2.52
2304 2362 7.279615 TCATGTCCACCGTATAAAATGAATCT 58.720 34.615 0.00 0.00 0.00 2.40
2449 2510 8.987890 CGTGATTGTATATACATTCCATGTTCA 58.012 33.333 24.65 12.83 41.63 3.18
2510 2572 7.961855 TGTTCAAAAACACAACAAAGATGATG 58.038 30.769 0.00 0.00 40.45 3.07
2511 2573 6.586868 TCAAAAACACAACAAAGATGATGC 57.413 33.333 0.00 0.00 32.93 3.91
2512 2574 6.339730 TCAAAAACACAACAAAGATGATGCT 58.660 32.000 0.00 0.00 32.93 3.79
2513 2575 6.817641 TCAAAAACACAACAAAGATGATGCTT 59.182 30.769 0.00 0.00 32.93 3.91
2514 2576 7.333921 TCAAAAACACAACAAAGATGATGCTTT 59.666 29.630 0.00 0.00 38.57 3.51
2515 2577 8.602328 CAAAAACACAACAAAGATGATGCTTTA 58.398 29.630 0.00 0.00 36.39 1.85
2516 2578 7.935338 AAACACAACAAAGATGATGCTTTAG 57.065 32.000 0.00 0.00 36.39 1.85
2517 2579 6.882610 ACACAACAAAGATGATGCTTTAGA 57.117 33.333 0.00 0.00 36.39 2.10
2518 2580 7.458409 ACACAACAAAGATGATGCTTTAGAT 57.542 32.000 0.00 0.00 36.39 1.98
2519 2581 8.565896 ACACAACAAAGATGATGCTTTAGATA 57.434 30.769 0.00 0.00 36.39 1.98
2520 2582 9.182214 ACACAACAAAGATGATGCTTTAGATAT 57.818 29.630 0.00 0.00 36.39 1.63
2521 2583 9.447040 CACAACAAAGATGATGCTTTAGATATG 57.553 33.333 0.00 0.00 36.39 1.78
2522 2584 9.399797 ACAACAAAGATGATGCTTTAGATATGA 57.600 29.630 0.00 0.00 36.39 2.15
2603 2665 8.644374 TTTTAACCCATGCTTTAGTTAGATGT 57.356 30.769 0.00 0.00 0.00 3.06
2604 2666 9.742144 TTTTAACCCATGCTTTAGTTAGATGTA 57.258 29.630 0.00 0.00 0.00 2.29
2605 2667 8.726870 TTAACCCATGCTTTAGTTAGATGTAC 57.273 34.615 0.00 0.00 0.00 2.90
2606 2668 6.308015 ACCCATGCTTTAGTTAGATGTACA 57.692 37.500 0.00 0.00 0.00 2.90
2607 2669 6.113411 ACCCATGCTTTAGTTAGATGTACAC 58.887 40.000 0.00 0.00 0.00 2.90
2608 2670 5.527582 CCCATGCTTTAGTTAGATGTACACC 59.472 44.000 0.00 0.00 0.00 4.16
2609 2671 5.234329 CCATGCTTTAGTTAGATGTACACCG 59.766 44.000 0.00 0.00 0.00 4.94
2610 2672 5.395682 TGCTTTAGTTAGATGTACACCGT 57.604 39.130 0.00 0.00 0.00 4.83
2611 2673 5.786311 TGCTTTAGTTAGATGTACACCGTT 58.214 37.500 0.00 0.00 0.00 4.44
2612 2674 5.865552 TGCTTTAGTTAGATGTACACCGTTC 59.134 40.000 0.00 0.00 0.00 3.95
2613 2675 5.865552 GCTTTAGTTAGATGTACACCGTTCA 59.134 40.000 0.00 0.00 0.00 3.18
2614 2676 6.534079 GCTTTAGTTAGATGTACACCGTTCAT 59.466 38.462 0.00 0.00 0.00 2.57
2615 2677 7.703621 GCTTTAGTTAGATGTACACCGTTCATA 59.296 37.037 0.00 0.00 0.00 2.15
2616 2678 9.234384 CTTTAGTTAGATGTACACCGTTCATAG 57.766 37.037 0.00 0.00 0.00 2.23
2617 2679 8.510243 TTAGTTAGATGTACACCGTTCATAGA 57.490 34.615 0.00 0.00 0.00 1.98
2618 2680 7.028926 AGTTAGATGTACACCGTTCATAGAG 57.971 40.000 0.00 0.00 0.00 2.43
2619 2681 4.308899 AGATGTACACCGTTCATAGAGC 57.691 45.455 0.00 0.00 0.00 4.09
2620 2682 3.699538 AGATGTACACCGTTCATAGAGCA 59.300 43.478 0.00 0.00 0.00 4.26
2621 2683 3.945981 TGTACACCGTTCATAGAGCAA 57.054 42.857 0.00 0.00 0.00 3.91
2622 2684 4.465632 TGTACACCGTTCATAGAGCAAT 57.534 40.909 0.00 0.00 0.00 3.56
2623 2685 4.180817 TGTACACCGTTCATAGAGCAATG 58.819 43.478 0.00 0.00 0.00 2.82
2624 2686 3.334583 ACACCGTTCATAGAGCAATGT 57.665 42.857 0.00 0.00 0.00 2.71
2625 2687 3.002791 ACACCGTTCATAGAGCAATGTG 58.997 45.455 0.00 0.00 0.00 3.21
2626 2688 2.352651 CACCGTTCATAGAGCAATGTGG 59.647 50.000 0.00 0.00 0.00 4.17
2627 2689 2.027192 ACCGTTCATAGAGCAATGTGGT 60.027 45.455 0.00 0.00 0.00 4.16
2628 2690 2.352651 CCGTTCATAGAGCAATGTGGTG 59.647 50.000 0.00 0.00 0.00 4.17
2629 2691 3.261580 CGTTCATAGAGCAATGTGGTGA 58.738 45.455 0.00 0.00 0.00 4.02
2630 2692 3.873361 CGTTCATAGAGCAATGTGGTGAT 59.127 43.478 0.00 0.00 0.00 3.06
2631 2693 4.260497 CGTTCATAGAGCAATGTGGTGATG 60.260 45.833 0.00 0.00 0.00 3.07
2632 2694 4.492494 TCATAGAGCAATGTGGTGATGT 57.508 40.909 0.00 0.00 0.00 3.06
2633 2695 4.445453 TCATAGAGCAATGTGGTGATGTC 58.555 43.478 0.00 0.00 0.00 3.06
2634 2696 2.865119 AGAGCAATGTGGTGATGTCA 57.135 45.000 0.00 0.00 0.00 3.58
2635 2697 3.361281 AGAGCAATGTGGTGATGTCAT 57.639 42.857 0.00 0.00 0.00 3.06
2636 2698 3.276857 AGAGCAATGTGGTGATGTCATC 58.723 45.455 5.83 5.83 0.00 2.92
2637 2699 2.011947 AGCAATGTGGTGATGTCATCG 58.988 47.619 8.29 0.00 0.00 3.84
2638 2700 2.009051 GCAATGTGGTGATGTCATCGA 58.991 47.619 8.29 0.00 0.00 3.59
2639 2701 2.615447 GCAATGTGGTGATGTCATCGAT 59.385 45.455 8.29 0.00 0.00 3.59
2640 2702 3.809279 GCAATGTGGTGATGTCATCGATA 59.191 43.478 8.29 0.00 0.00 2.92
2641 2703 4.319046 GCAATGTGGTGATGTCATCGATAC 60.319 45.833 8.29 7.15 0.00 2.24
2642 2704 3.452755 TGTGGTGATGTCATCGATACC 57.547 47.619 12.03 12.03 0.00 2.73
2643 2705 3.031013 TGTGGTGATGTCATCGATACCT 58.969 45.455 17.35 0.00 0.00 3.08
2644 2706 3.450817 TGTGGTGATGTCATCGATACCTT 59.549 43.478 17.35 0.00 0.00 3.50
2645 2707 4.647399 TGTGGTGATGTCATCGATACCTTA 59.353 41.667 17.35 7.50 0.00 2.69
2646 2708 5.128008 TGTGGTGATGTCATCGATACCTTAA 59.872 40.000 17.35 5.16 0.00 1.85
2647 2709 6.046593 GTGGTGATGTCATCGATACCTTAAA 58.953 40.000 17.35 0.47 0.00 1.52
2648 2710 6.706270 GTGGTGATGTCATCGATACCTTAAAT 59.294 38.462 17.35 0.00 0.00 1.40
2649 2711 6.705825 TGGTGATGTCATCGATACCTTAAATG 59.294 38.462 17.35 0.00 0.00 2.32
2650 2712 6.347725 GGTGATGTCATCGATACCTTAAATGC 60.348 42.308 11.76 0.00 0.00 3.56
2651 2713 6.202762 GTGATGTCATCGATACCTTAAATGCA 59.797 38.462 8.29 0.00 0.00 3.96
2652 2714 6.765512 TGATGTCATCGATACCTTAAATGCAA 59.234 34.615 8.29 0.00 0.00 4.08
2653 2715 6.993786 TGTCATCGATACCTTAAATGCAAA 57.006 33.333 0.00 0.00 0.00 3.68
2654 2716 7.566760 TGTCATCGATACCTTAAATGCAAAT 57.433 32.000 0.00 0.00 0.00 2.32
2655 2717 7.416817 TGTCATCGATACCTTAAATGCAAATG 58.583 34.615 0.00 0.00 0.00 2.32
2656 2718 7.281999 TGTCATCGATACCTTAAATGCAAATGA 59.718 33.333 0.00 0.00 0.00 2.57
2657 2719 8.128582 GTCATCGATACCTTAAATGCAAATGAA 58.871 33.333 0.00 0.00 0.00 2.57
2658 2720 8.849168 TCATCGATACCTTAAATGCAAATGAAT 58.151 29.630 0.00 0.00 0.00 2.57
2659 2721 9.467258 CATCGATACCTTAAATGCAAATGAATT 57.533 29.630 0.00 0.00 0.00 2.17
2675 2737 6.476243 AATGAATTTGAGCTTGTTCAATGC 57.524 33.333 1.05 0.00 36.97 3.56
2676 2738 4.946445 TGAATTTGAGCTTGTTCAATGCA 58.054 34.783 0.00 0.00 36.97 3.96
2677 2739 5.543714 TGAATTTGAGCTTGTTCAATGCAT 58.456 33.333 0.00 0.00 36.97 3.96
2678 2740 5.407084 TGAATTTGAGCTTGTTCAATGCATG 59.593 36.000 0.00 0.00 36.97 4.06
2679 2741 4.325028 TTTGAGCTTGTTCAATGCATGT 57.675 36.364 0.00 0.00 36.97 3.21
2680 2742 5.450592 TTTGAGCTTGTTCAATGCATGTA 57.549 34.783 0.00 0.00 36.97 2.29
2681 2743 5.648178 TTGAGCTTGTTCAATGCATGTAT 57.352 34.783 0.00 0.00 32.39 2.29
2682 2744 5.648178 TGAGCTTGTTCAATGCATGTATT 57.352 34.783 0.00 2.84 0.00 1.89
2683 2745 6.756299 TGAGCTTGTTCAATGCATGTATTA 57.244 33.333 8.81 0.00 0.00 0.98
2684 2746 7.337480 TGAGCTTGTTCAATGCATGTATTAT 57.663 32.000 8.81 0.00 0.00 1.28
2685 2747 8.449251 TGAGCTTGTTCAATGCATGTATTATA 57.551 30.769 8.81 0.00 0.00 0.98
2686 2748 8.344831 TGAGCTTGTTCAATGCATGTATTATAC 58.655 33.333 8.81 10.16 0.00 1.47
2687 2749 8.455903 AGCTTGTTCAATGCATGTATTATACT 57.544 30.769 8.81 0.00 0.00 2.12
2688 2750 9.559732 AGCTTGTTCAATGCATGTATTATACTA 57.440 29.630 8.81 6.47 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.194062 TCGACGGAAAAGTACGGTTTTT 58.806 40.909 0.00 0.00 29.58 1.94
15 16 2.820330 TCGACGGAAAAGTACGGTTTT 58.180 42.857 0.00 0.00 32.18 2.43
16 17 2.507339 TCGACGGAAAAGTACGGTTT 57.493 45.000 0.00 0.00 0.00 3.27
17 18 2.730550 ATCGACGGAAAAGTACGGTT 57.269 45.000 0.00 0.00 0.00 4.44
18 19 4.023707 CCTATATCGACGGAAAAGTACGGT 60.024 45.833 0.00 0.00 0.00 4.83
19 20 4.214119 TCCTATATCGACGGAAAAGTACGG 59.786 45.833 0.00 0.00 0.00 4.02
20 21 5.348418 TCCTATATCGACGGAAAAGTACG 57.652 43.478 0.00 0.00 0.00 3.67
21 22 6.143598 GCTTTCCTATATCGACGGAAAAGTAC 59.856 42.308 16.12 0.00 43.83 2.73
22 23 6.040166 AGCTTTCCTATATCGACGGAAAAGTA 59.960 38.462 16.12 1.40 43.83 2.24
23 24 5.048507 GCTTTCCTATATCGACGGAAAAGT 58.951 41.667 16.12 0.00 43.83 2.66
24 25 5.290386 AGCTTTCCTATATCGACGGAAAAG 58.710 41.667 16.12 10.21 43.83 2.27
25 26 5.272283 AGCTTTCCTATATCGACGGAAAA 57.728 39.130 16.12 2.10 43.83 2.29
26 27 4.261909 GGAGCTTTCCTATATCGACGGAAA 60.262 45.833 15.13 15.13 42.70 3.13
27 28 3.255149 GGAGCTTTCCTATATCGACGGAA 59.745 47.826 0.00 0.00 35.16 4.30
28 29 2.818432 GGAGCTTTCCTATATCGACGGA 59.182 50.000 0.00 0.00 0.00 4.69
29 30 2.820787 AGGAGCTTTCCTATATCGACGG 59.179 50.000 0.00 0.00 38.58 4.79
30 31 3.253677 ACAGGAGCTTTCCTATATCGACG 59.746 47.826 0.00 0.00 38.22 5.12
31 32 4.551388 CACAGGAGCTTTCCTATATCGAC 58.449 47.826 0.00 0.00 38.22 4.20
32 33 3.005897 GCACAGGAGCTTTCCTATATCGA 59.994 47.826 0.00 0.00 38.22 3.59
33 34 3.006323 AGCACAGGAGCTTTCCTATATCG 59.994 47.826 0.00 0.00 43.70 2.92
34 35 4.562552 GGAGCACAGGAGCTTTCCTATATC 60.563 50.000 0.00 0.00 46.75 1.63
35 36 3.326297 GGAGCACAGGAGCTTTCCTATAT 59.674 47.826 0.00 0.00 46.75 0.86
36 37 2.700897 GGAGCACAGGAGCTTTCCTATA 59.299 50.000 0.00 0.00 46.75 1.31
37 38 1.488393 GGAGCACAGGAGCTTTCCTAT 59.512 52.381 0.00 0.00 46.75 2.57
38 39 0.905357 GGAGCACAGGAGCTTTCCTA 59.095 55.000 0.00 0.00 46.75 2.94
39 40 1.682257 GGAGCACAGGAGCTTTCCT 59.318 57.895 0.00 0.00 46.75 3.36
40 41 1.377856 GGGAGCACAGGAGCTTTCC 60.378 63.158 0.00 0.00 46.75 3.13
41 42 0.676151 CTGGGAGCACAGGAGCTTTC 60.676 60.000 0.00 0.00 46.75 2.62
42 43 1.377994 CTGGGAGCACAGGAGCTTT 59.622 57.895 0.00 0.00 46.75 3.51
43 44 0.545309 TACTGGGAGCACAGGAGCTT 60.545 55.000 4.58 0.00 46.75 3.74
45 46 1.219393 GTACTGGGAGCACAGGAGC 59.781 63.158 4.58 0.00 42.75 4.70
46 47 0.534412 CAGTACTGGGAGCACAGGAG 59.466 60.000 15.49 0.00 42.75 3.69
47 48 0.178932 ACAGTACTGGGAGCACAGGA 60.179 55.000 26.12 0.00 42.75 3.86
48 49 0.036952 CACAGTACTGGGAGCACAGG 60.037 60.000 26.12 0.00 42.75 4.00
49 50 0.681733 ACACAGTACTGGGAGCACAG 59.318 55.000 31.54 10.03 44.03 3.66
50 51 0.392706 CACACAGTACTGGGAGCACA 59.607 55.000 31.54 0.00 37.45 4.57
51 52 0.393077 ACACACAGTACTGGGAGCAC 59.607 55.000 31.54 0.00 37.45 4.40
52 53 2.003937 TACACACAGTACTGGGAGCA 57.996 50.000 31.54 12.01 37.45 4.26
53 54 3.611766 AATACACACAGTACTGGGAGC 57.388 47.619 31.54 0.00 37.45 4.70
54 55 5.181245 CCAAAAATACACACAGTACTGGGAG 59.819 44.000 31.54 25.28 37.45 4.30
55 56 5.067273 CCAAAAATACACACAGTACTGGGA 58.933 41.667 31.54 9.95 37.45 4.37
56 57 4.320935 GCCAAAAATACACACAGTACTGGG 60.321 45.833 23.74 23.74 40.54 4.45
57 58 4.277174 TGCCAAAAATACACACAGTACTGG 59.723 41.667 26.12 16.94 35.05 4.00
58 59 5.431420 TGCCAAAAATACACACAGTACTG 57.569 39.130 21.44 21.44 35.05 2.74
59 60 5.504994 CGTTGCCAAAAATACACACAGTACT 60.505 40.000 0.00 0.00 35.05 2.73
60 61 4.673311 CGTTGCCAAAAATACACACAGTAC 59.327 41.667 0.00 0.00 35.05 2.73
61 62 4.575236 TCGTTGCCAAAAATACACACAGTA 59.425 37.500 0.00 0.00 37.06 2.74
62 63 3.378742 TCGTTGCCAAAAATACACACAGT 59.621 39.130 0.00 0.00 0.00 3.55
63 64 3.958704 TCGTTGCCAAAAATACACACAG 58.041 40.909 0.00 0.00 0.00 3.66
64 65 4.371855 TTCGTTGCCAAAAATACACACA 57.628 36.364 0.00 0.00 0.00 3.72
65 66 5.898630 ATTTCGTTGCCAAAAATACACAC 57.101 34.783 0.00 0.00 0.00 3.82
66 67 8.594881 AATAATTTCGTTGCCAAAAATACACA 57.405 26.923 0.00 0.00 0.00 3.72
71 72 9.495572 TTCCTAAATAATTTCGTTGCCAAAAAT 57.504 25.926 0.00 0.00 0.00 1.82
72 73 8.888579 TTCCTAAATAATTTCGTTGCCAAAAA 57.111 26.923 0.00 0.00 0.00 1.94
73 74 8.888579 TTTCCTAAATAATTTCGTTGCCAAAA 57.111 26.923 0.00 0.00 0.00 2.44
74 75 8.888579 TTTTCCTAAATAATTTCGTTGCCAAA 57.111 26.923 0.00 0.00 0.00 3.28
75 76 8.766151 GTTTTTCCTAAATAATTTCGTTGCCAA 58.234 29.630 0.00 0.00 0.00 4.52
76 77 7.385478 GGTTTTTCCTAAATAATTTCGTTGCCA 59.615 33.333 0.00 0.00 0.00 4.92
77 78 7.385478 TGGTTTTTCCTAAATAATTTCGTTGCC 59.615 33.333 0.00 0.00 37.07 4.52
78 79 8.300495 TGGTTTTTCCTAAATAATTTCGTTGC 57.700 30.769 0.00 0.00 37.07 4.17
93 94 7.920682 GCAAAATCATCGTATATGGTTTTTCCT 59.079 33.333 6.29 0.00 39.50 3.36
94 95 7.169140 GGCAAAATCATCGTATATGGTTTTTCC 59.831 37.037 8.63 8.63 39.50 3.13
95 96 7.169140 GGGCAAAATCATCGTATATGGTTTTTC 59.831 37.037 6.29 2.82 39.50 2.29
96 97 6.983890 GGGCAAAATCATCGTATATGGTTTTT 59.016 34.615 6.29 1.68 39.50 1.94
97 98 6.323739 AGGGCAAAATCATCGTATATGGTTTT 59.676 34.615 3.69 3.69 41.45 2.43
98 99 5.833131 AGGGCAAAATCATCGTATATGGTTT 59.167 36.000 0.00 0.00 34.14 3.27
99 100 5.385198 AGGGCAAAATCATCGTATATGGTT 58.615 37.500 0.00 0.00 0.00 3.67
100 101 4.985538 AGGGCAAAATCATCGTATATGGT 58.014 39.130 0.00 0.00 0.00 3.55
101 102 7.447374 TTTAGGGCAAAATCATCGTATATGG 57.553 36.000 0.00 0.00 0.00 2.74
129 130 3.909364 TGGGAGGGCAAAATGATCTTTTT 59.091 39.130 12.28 12.28 0.00 1.94
130 131 3.516700 CTGGGAGGGCAAAATGATCTTTT 59.483 43.478 0.88 0.88 0.00 2.27
131 132 3.102204 CTGGGAGGGCAAAATGATCTTT 58.898 45.455 0.00 0.00 0.00 2.52
132 133 2.625087 CCTGGGAGGGCAAAATGATCTT 60.625 50.000 0.00 0.00 0.00 2.40
133 134 1.063417 CCTGGGAGGGCAAAATGATCT 60.063 52.381 0.00 0.00 0.00 2.75
134 135 1.406903 CCTGGGAGGGCAAAATGATC 58.593 55.000 0.00 0.00 0.00 2.92
135 136 3.621419 CCTGGGAGGGCAAAATGAT 57.379 52.632 0.00 0.00 0.00 2.45
177 178 2.296471 GACGTATAGGGATCACCACTGG 59.704 54.545 0.00 0.00 43.89 4.00
180 181 4.602340 AATGACGTATAGGGATCACCAC 57.398 45.455 0.00 0.00 43.89 4.16
258 259 0.108089 GCTTCCGTTTCTCTCTCCCC 60.108 60.000 0.00 0.00 0.00 4.81
330 331 3.357079 CAGCCCCTGAACGCACAC 61.357 66.667 0.00 0.00 32.44 3.82
371 380 2.807470 CGTGTATCCGTGCGTGCA 60.807 61.111 0.00 0.00 0.00 4.57
372 381 4.204891 GCGTGTATCCGTGCGTGC 62.205 66.667 0.00 0.00 0.00 5.34
373 382 3.897502 CGCGTGTATCCGTGCGTG 61.898 66.667 0.00 0.00 45.12 5.34
415 424 0.818445 CGGCCGAAGAGCTCTAGGTA 60.818 60.000 28.39 0.00 0.00 3.08
430 439 2.280186 GACCATCGGACATCGGCC 60.280 66.667 0.00 0.00 39.77 6.13
471 480 0.525668 CTACGTGGCCTAGCTCGTTG 60.526 60.000 3.32 4.87 38.90 4.10
522 531 3.668980 AAGCAATTGGGCATGGCGC 62.669 57.895 13.76 10.48 41.94 6.53
716 738 2.025441 GCAAACGCGCAGGTTCAA 59.975 55.556 5.73 0.00 0.00 2.69
758 782 3.680786 CCACGAGTCTCCGCACCA 61.681 66.667 0.00 0.00 0.00 4.17
761 785 3.749064 GCTCCACGAGTCTCCGCA 61.749 66.667 0.00 0.00 31.39 5.69
783 807 4.760047 GGACACATGGGCGACGCT 62.760 66.667 20.77 0.00 0.00 5.07
963 987 2.875933 ACGATTAGTGTGTTGGTGTTGG 59.124 45.455 0.00 0.00 0.00 3.77
964 988 3.558006 TGACGATTAGTGTGTTGGTGTTG 59.442 43.478 0.00 0.00 0.00 3.33
965 989 3.799366 TGACGATTAGTGTGTTGGTGTT 58.201 40.909 0.00 0.00 0.00 3.32
966 990 3.181469 ACTGACGATTAGTGTGTTGGTGT 60.181 43.478 0.00 0.00 0.00 4.16
967 991 3.390135 ACTGACGATTAGTGTGTTGGTG 58.610 45.455 0.00 0.00 0.00 4.17
968 992 3.321111 AGACTGACGATTAGTGTGTTGGT 59.679 43.478 0.00 0.00 0.00 3.67
979 1003 6.322456 TCCATTGAAGAGATAGACTGACGATT 59.678 38.462 0.00 0.00 0.00 3.34
987 1011 4.343526 TCCTGCTCCATTGAAGAGATAGAC 59.656 45.833 0.00 0.00 32.86 2.59
996 1025 0.329261 CCACCTCCTGCTCCATTGAA 59.671 55.000 0.00 0.00 0.00 2.69
1239 1268 3.077556 CCGTAGAGTGCCCTGGCT 61.078 66.667 9.97 0.00 42.51 4.75
1832 1864 0.459899 ATGCTACTGCGACGATGGAA 59.540 50.000 0.00 0.00 43.34 3.53
2277 2335 6.671614 TCATTTTATACGGTGGACATGAAC 57.328 37.500 0.00 0.00 0.00 3.18
2282 2340 9.621629 ATTTAGATTCATTTTATACGGTGGACA 57.378 29.630 0.00 0.00 0.00 4.02
2479 2541 8.644264 CTTTGTTGTGTTTTTGAACATCAAAG 57.356 30.769 17.82 17.82 45.77 2.77
2482 2544 7.816513 TCATCTTTGTTGTGTTTTTGAACATCA 59.183 29.630 0.00 0.00 34.86 3.07
2494 2556 6.882610 TCTAAAGCATCATCTTTGTTGTGT 57.117 33.333 0.00 0.00 36.95 3.72
2495 2557 9.447040 CATATCTAAAGCATCATCTTTGTTGTG 57.553 33.333 0.00 0.00 36.95 3.33
2496 2558 9.399797 TCATATCTAAAGCATCATCTTTGTTGT 57.600 29.630 0.00 0.00 36.95 3.32
2577 2639 9.255029 ACATCTAACTAAAGCATGGGTTAAAAT 57.745 29.630 0.00 0.00 0.00 1.82
2578 2640 8.644374 ACATCTAACTAAAGCATGGGTTAAAA 57.356 30.769 0.00 0.00 0.00 1.52
2579 2641 9.169592 GTACATCTAACTAAAGCATGGGTTAAA 57.830 33.333 0.00 0.00 0.00 1.52
2580 2642 8.322828 TGTACATCTAACTAAAGCATGGGTTAA 58.677 33.333 0.00 0.00 0.00 2.01
2581 2643 7.767198 GTGTACATCTAACTAAAGCATGGGTTA 59.233 37.037 0.00 0.00 0.00 2.85
2582 2644 6.598064 GTGTACATCTAACTAAAGCATGGGTT 59.402 38.462 0.00 0.00 0.00 4.11
2583 2645 6.113411 GTGTACATCTAACTAAAGCATGGGT 58.887 40.000 0.00 0.00 0.00 4.51
2584 2646 5.527582 GGTGTACATCTAACTAAAGCATGGG 59.472 44.000 0.00 0.00 0.00 4.00
2585 2647 5.234329 CGGTGTACATCTAACTAAAGCATGG 59.766 44.000 4.28 0.00 0.00 3.66
2586 2648 5.810587 ACGGTGTACATCTAACTAAAGCATG 59.189 40.000 4.28 0.00 0.00 4.06
2587 2649 5.974108 ACGGTGTACATCTAACTAAAGCAT 58.026 37.500 4.28 0.00 0.00 3.79
2588 2650 5.395682 ACGGTGTACATCTAACTAAAGCA 57.604 39.130 4.28 0.00 0.00 3.91
2589 2651 5.865552 TGAACGGTGTACATCTAACTAAAGC 59.134 40.000 4.28 0.00 0.00 3.51
2590 2652 9.234384 CTATGAACGGTGTACATCTAACTAAAG 57.766 37.037 4.28 0.00 0.00 1.85
2591 2653 8.959548 TCTATGAACGGTGTACATCTAACTAAA 58.040 33.333 4.28 0.00 0.00 1.85
2592 2654 8.510243 TCTATGAACGGTGTACATCTAACTAA 57.490 34.615 4.28 0.00 0.00 2.24
2593 2655 7.255035 GCTCTATGAACGGTGTACATCTAACTA 60.255 40.741 4.28 0.00 0.00 2.24
2594 2656 6.459848 GCTCTATGAACGGTGTACATCTAACT 60.460 42.308 4.28 0.00 0.00 2.24
2595 2657 5.686397 GCTCTATGAACGGTGTACATCTAAC 59.314 44.000 4.28 0.00 0.00 2.34
2596 2658 5.358725 TGCTCTATGAACGGTGTACATCTAA 59.641 40.000 4.28 0.00 0.00 2.10
2597 2659 4.885325 TGCTCTATGAACGGTGTACATCTA 59.115 41.667 4.28 0.00 0.00 1.98
2598 2660 3.699538 TGCTCTATGAACGGTGTACATCT 59.300 43.478 4.28 0.00 0.00 2.90
2599 2661 4.041740 TGCTCTATGAACGGTGTACATC 57.958 45.455 0.00 0.00 0.00 3.06
2600 2662 4.465632 TTGCTCTATGAACGGTGTACAT 57.534 40.909 0.00 0.00 0.00 2.29
2601 2663 3.945981 TTGCTCTATGAACGGTGTACA 57.054 42.857 0.00 0.00 0.00 2.90
2602 2664 4.032900 CACATTGCTCTATGAACGGTGTAC 59.967 45.833 0.00 0.00 0.00 2.90
2603 2665 4.180817 CACATTGCTCTATGAACGGTGTA 58.819 43.478 0.00 0.00 0.00 2.90
2604 2666 3.002791 CACATTGCTCTATGAACGGTGT 58.997 45.455 0.00 0.00 0.00 4.16
2605 2667 2.352651 CCACATTGCTCTATGAACGGTG 59.647 50.000 0.00 0.00 0.00 4.94
2606 2668 2.027192 ACCACATTGCTCTATGAACGGT 60.027 45.455 0.00 0.00 0.00 4.83
2607 2669 2.352651 CACCACATTGCTCTATGAACGG 59.647 50.000 0.00 0.00 0.00 4.44
2608 2670 3.261580 TCACCACATTGCTCTATGAACG 58.738 45.455 0.00 0.00 0.00 3.95
2609 2671 4.637534 ACATCACCACATTGCTCTATGAAC 59.362 41.667 0.00 0.00 0.00 3.18
2610 2672 4.847198 ACATCACCACATTGCTCTATGAA 58.153 39.130 0.00 0.00 0.00 2.57
2611 2673 4.080975 TGACATCACCACATTGCTCTATGA 60.081 41.667 0.00 0.00 0.00 2.15
2612 2674 4.193865 TGACATCACCACATTGCTCTATG 58.806 43.478 0.00 0.00 0.00 2.23
2613 2675 4.492494 TGACATCACCACATTGCTCTAT 57.508 40.909 0.00 0.00 0.00 1.98
2614 2676 3.979101 TGACATCACCACATTGCTCTA 57.021 42.857 0.00 0.00 0.00 2.43
2615 2677 2.865119 TGACATCACCACATTGCTCT 57.135 45.000 0.00 0.00 0.00 4.09
2616 2678 2.031314 CGATGACATCACCACATTGCTC 59.969 50.000 15.58 0.00 0.00 4.26
2617 2679 2.011947 CGATGACATCACCACATTGCT 58.988 47.619 15.58 0.00 0.00 3.91
2618 2680 2.009051 TCGATGACATCACCACATTGC 58.991 47.619 15.58 0.00 0.00 3.56
2619 2681 4.212004 GGTATCGATGACATCACCACATTG 59.788 45.833 15.58 0.00 0.00 2.82
2620 2682 4.101585 AGGTATCGATGACATCACCACATT 59.898 41.667 20.03 2.89 0.00 2.71
2621 2683 3.643320 AGGTATCGATGACATCACCACAT 59.357 43.478 20.03 8.32 0.00 3.21
2622 2684 3.031013 AGGTATCGATGACATCACCACA 58.969 45.455 20.03 0.05 0.00 4.17
2623 2685 3.735237 AGGTATCGATGACATCACCAC 57.265 47.619 20.03 11.86 0.00 4.16
2624 2686 5.862678 TTAAGGTATCGATGACATCACCA 57.137 39.130 20.03 4.26 0.00 4.17
2625 2687 6.347725 GCATTTAAGGTATCGATGACATCACC 60.348 42.308 15.58 14.27 0.00 4.02
2626 2688 6.202762 TGCATTTAAGGTATCGATGACATCAC 59.797 38.462 15.58 6.10 0.00 3.06
2627 2689 6.287525 TGCATTTAAGGTATCGATGACATCA 58.712 36.000 15.58 3.49 0.00 3.07
2628 2690 6.785488 TGCATTTAAGGTATCGATGACATC 57.215 37.500 8.54 5.28 0.00 3.06
2629 2691 7.566760 TTTGCATTTAAGGTATCGATGACAT 57.433 32.000 8.54 0.00 0.00 3.06
2630 2692 6.993786 TTTGCATTTAAGGTATCGATGACA 57.006 33.333 8.54 0.00 0.00 3.58
2631 2693 7.639039 TCATTTGCATTTAAGGTATCGATGAC 58.361 34.615 8.54 0.13 0.00 3.06
2632 2694 7.800155 TCATTTGCATTTAAGGTATCGATGA 57.200 32.000 8.54 0.00 0.00 2.92
2633 2695 9.467258 AATTCATTTGCATTTAAGGTATCGATG 57.533 29.630 8.54 0.00 0.00 3.84
2635 2697 9.299963 CAAATTCATTTGCATTTAAGGTATCGA 57.700 29.630 0.00 0.00 40.42 3.59
2636 2698 9.299963 TCAAATTCATTTGCATTTAAGGTATCG 57.700 29.630 7.31 0.00 45.06 2.92
2638 2700 9.101655 GCTCAAATTCATTTGCATTTAAGGTAT 57.898 29.630 7.31 0.00 45.06 2.73
2639 2701 8.313292 AGCTCAAATTCATTTGCATTTAAGGTA 58.687 29.630 7.31 0.00 45.06 3.08
2640 2702 7.163441 AGCTCAAATTCATTTGCATTTAAGGT 58.837 30.769 7.31 2.40 45.06 3.50
2641 2703 7.605410 AGCTCAAATTCATTTGCATTTAAGG 57.395 32.000 7.31 0.00 45.06 2.69
2642 2704 8.500773 ACAAGCTCAAATTCATTTGCATTTAAG 58.499 29.630 7.31 1.02 45.06 1.85
2643 2705 8.380743 ACAAGCTCAAATTCATTTGCATTTAA 57.619 26.923 7.31 0.00 45.06 1.52
2644 2706 7.966246 ACAAGCTCAAATTCATTTGCATTTA 57.034 28.000 7.31 0.00 45.06 1.40
2645 2707 6.870971 ACAAGCTCAAATTCATTTGCATTT 57.129 29.167 7.31 0.12 45.06 2.32
2646 2708 6.483974 TGAACAAGCTCAAATTCATTTGCATT 59.516 30.769 7.31 0.63 45.06 3.56
2647 2709 5.992829 TGAACAAGCTCAAATTCATTTGCAT 59.007 32.000 7.31 0.00 45.06 3.96
2648 2710 5.358090 TGAACAAGCTCAAATTCATTTGCA 58.642 33.333 7.31 0.00 45.06 4.08
2649 2711 5.910637 TGAACAAGCTCAAATTCATTTGC 57.089 34.783 7.31 0.00 45.06 3.68
2650 2712 6.795114 GCATTGAACAAGCTCAAATTCATTTG 59.205 34.615 5.99 5.99 46.39 2.32
2651 2713 6.483974 TGCATTGAACAAGCTCAAATTCATTT 59.516 30.769 0.00 0.00 38.75 2.32
2652 2714 5.992829 TGCATTGAACAAGCTCAAATTCATT 59.007 32.000 0.00 0.00 38.75 2.57
2653 2715 5.543714 TGCATTGAACAAGCTCAAATTCAT 58.456 33.333 0.00 0.00 38.75 2.57
2654 2716 4.946445 TGCATTGAACAAGCTCAAATTCA 58.054 34.783 0.00 0.00 38.75 2.57
2655 2717 5.407387 ACATGCATTGAACAAGCTCAAATTC 59.593 36.000 0.00 0.00 38.75 2.17
2656 2718 5.302360 ACATGCATTGAACAAGCTCAAATT 58.698 33.333 0.00 0.00 38.75 1.82
2657 2719 4.890088 ACATGCATTGAACAAGCTCAAAT 58.110 34.783 0.00 0.00 38.75 2.32
2658 2720 4.325028 ACATGCATTGAACAAGCTCAAA 57.675 36.364 0.00 0.00 38.75 2.69
2659 2721 5.648178 ATACATGCATTGAACAAGCTCAA 57.352 34.783 0.00 0.00 39.56 3.02
2660 2722 5.648178 AATACATGCATTGAACAAGCTCA 57.352 34.783 0.00 0.00 0.00 4.26
2661 2723 8.562892 AGTATAATACATGCATTGAACAAGCTC 58.437 33.333 0.00 0.00 0.00 4.09
2662 2724 8.455903 AGTATAATACATGCATTGAACAAGCT 57.544 30.769 0.00 0.00 0.00 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.