>input_sequence_71470
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------ATGGAGCAGGAG
GTGGTTGCGGGGATGAAGCAGAAGAAGTGCTGCCCGCTCCGGCGGTCGCGCAAGGGCTGCATGAAGGGCAAGGGCGGCCC
GGACAACCAGCAGTGCCCCTTCCGCGGCGTCCGCCAGCGCACCTGGGGCAAGTGGGTCGCCGAGATCCGCGAGCCCAACC
GCGGCGCCCGCCTCTGGCTCGGCACCTTCGCCAGCGCGCTCGACGCCGCGCGCGCCTACGACGCCGCAGCCAGGGCACTC
TACGGCGACTGCGCCCGCCTCAACCTCTCGGCGTCGCCGTCCCAGATGCAGCA---CCCTCCAGCTCAAGGCAGTGGTGG
CGCCAACGGTAATTCGGCGCCGGGGACGCCGTGCTGCTCCTCCAACAACTCCAACTCCAGCGCGTCGACCCCGACCGGGA
CTCCCACGGACATGGACTGCAGTGCCTGGATGCAGCCGTCTTACTGTTACAGCACGGCGGAGGCGCCGGAGGACTTCGAG
GCGTACGTGACGCGACTGCCCAAGGCGGAGGACTTTGGACTGGAGGGGTTCCAGGAGGTGCCCCTGGAGGTGCTGGCCGA
AGCCGGAGGAGGGGTCAGCATCTGGGACCTCAGCATAGCCCCTGAAATGGCAGCAGCAGCCGCTTCTTCAGCTGCTGCCA
GTGCCTGCACTGTCCCCCAACAGCCGCTGCAGCAACCCAGCTGCTGA---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------
>chr1D_1_TraesCS1D01G244500
ATGCATACCCCGTAAAAAACCGTACTTTTCCGTCGATATAGGAAAGCTCCTGTGCTCCCAGTACTGTGTGTATTTTTGGC
AACGAAATTATTTAGGAAAAACCATATACGATGATTTTGCCCTAAAAAAAAAAAGATCATTTTGCCCTCCCAGGCTCCCA
CAAAAACCTGGGCTTTTCCAGTGGTGATCCCTATACGTCATTAAGGAGAATAGCACGCCGAGCCGCCGGCCGGAGAAGCA
GGAACCTTTCTGTAGAGTGGGGAGAGAGAAACGGAAGCACGCCGCGTACCCACCGAGACCGCTGCCAGAGCATGAGCAAT
ACAAGGCCAGGTGTGCGTTCAGGGGCTGCGACACTTGCATGCATGCAT--------GCATGCACGCACGGATACACGCGC
CGGGTGCACGTGCGAGCGCTCAATACCTAGAGCTCTTCGGCCGATGTCCGATGGTCGATGCCAAATCCTAGCTGCCATGC
AACGAGCTAGGCCACGTAGCACAGTCCGTACGACCCTGCACAAAAAGCTAGCGCCATGCCCAATTGCTTGCTCCTGCCTC
ATGCCATGGTGTCGCAGGA----AGAGAGAGAGCGTAC------GCACTGCTGCACACACACGCAGACTCTCGCGGATGG
ATAATCACATGTGCTAGCG---CTGAGAAAAAGAAACATGGAGAAGAAGCTCGTCCAAATCCAAACCCGGGCGGCTCGCT
GACCAAGGCGTCGACGCTTGAACCT--GCGCGTTTGCCGACAGGTAGCCGCCACGTGGCCCTGGTGCGGAGACTCGTGGA
GCCCACAGCGTCGCCCATGTGTCCTGCTCGCGCGGCCCCACCCCTTCGTGTCGAGCGGCCTCCTTACTTGGCGCACGCGT
GGGATACCTCGGACGCACACCCTACACGTCGCCTCGCCGCCGTCTTTCCCGCCCTTCGCTTTTCCACTTCACCTGTATAA
ATATCCGCCTCCCAGTCCCAGATATTCCAACACCAACACACTAATCGTCAGTCT-----ATCTCTTCAATGGAGCAGGAG
GTGGTTGCGGGGATGAAGCAGAAGAAGTGCTGCCCGCTCCGGCGGTCGCGCAAGGGCTGCATGAAGGGCAAGGGCGGCCC
GGACAACCAGCAGTGCCCCTTCCGCGGCGTCCGCCAGCGCACCTGGGGCAAGTGGGTCGCCGAGATCCGCGAGCCCAACC
GCGGCGCCCGCCTCTGGCTCGGCACCTTCGCCAGCGCGCTCGACGCCGCGCGCGCCTACGACGCCGCAGCCAGGGCACTC
TACGGCGACTGCGCCCGCCTCAACCTCTCGGCGTCGCCGTCCCAGATGCAGCA---CCCTCCAGCTCAAGGCAGTGGTGG
CGCCAACGGTAATTCGGCGCCGGGGACGCCGTGCTGCTCCTCCAACAACTCCAACTCCAGCGCGTCGACCCCGACCGGGA
CTCCCACGGACATGGACTGCAGTGCCTGGATGCAGCCGTCTTACTGTTACAGCACGGCGGAGGCGCCGGAGGACTTCGAG
GCGTACGTGACGCGACTGCCCAAGGCGGAGGACTTTGGACTGGAGGGGTTCCAGGAGGTGCCCCTGGAGGTGCTGGCCGA
AGCCGGAGGAGGGGTCAGCATCTGGGACCTCAGCATAGCCCCTGAAATGGCAGCAGCAGCCGCTTCTTCAGCTGCTGCCA
GTGCCTGCACTGTCCCCCAACAGCCGCTGCAGCAACCCAGCTGCTGAGGTGCAGATCGACGTCGACATAGAAAGTAAGGA
GTGGCCGTGATATATAGTGCATATACAGCATGCGGCATGCTGGTCACTGGCCGTGGTGCATGCAGCTAGATAGCTACGTA
GTTAGTACTAGTATTTGCTTTTTTTCCATCGTCGCAGTAGCATACTAGCATTAATATTGGTGGGCAGGTGAGCGTGCAAG
TGTGTGTATGATATAATCGTGCGTGGGAGCAGGGGTAATGAAATGATCAGTCTAATGGCGT--------GTGCTGCTGCA
GCGGTCCTATTGCAGATCATCCAAAAAACAGCAAGTAAGAGTAGTGACTTGGGGCATCTCCAA--------CACATATCA
TCTGGCCGACTCCATGGAATTTCCGTCCCTCAATTAAGGCGGACTTCGATTTTCCAAACAACCGGACACACCGACCTTTT
ATTGATATTGATTTTAAGATTTAATTTTACACAACAAAAGATCCTTGAAGAAAACCTAAAAATAATTAGAAAACCATG-T
C-ATACTCCACCCCTCACTTTGGACCCCTGCAAGCAGGAGCC--------ACCGACATGTGCCTTGTTGACATGGTGCGT
GTGCGAGAACAAGCGTTCATGTCCACCGTATAAAATGAATCTAAATTTACTCT--TTATTGTATATTA-AATTTAAATTT
ACACTATCGTATAAAATAAATTTAAATTTACTTCTCCTTAAAAAAACTCAAATCCATTTTATGTTTGGATACAGATCTAT
ATACGTGATTGTATATACATTCCATGTTCAAAAGTGATCTATATACGTGATTGTAT-TACCTTTGATGTTCAAAAACACA
ACAAAGATGATGCTTTAGATATGATTTACAAATGCTATGATGACAAAATCAATATTTAAATCCATATTAAATTTGAATAT
TTTAACCCATGCTTTAGTTAGATGTACACCGTTCATAGAGCAATGTGGTGATGTCATCGATACCTTAAATGCAAATGAAT
TTGAGCTTGTTCAATGCATGTATTATACTATATAACA
>chr1B_135
GATGATC-------------------------------------------------------------------------
-------------------------------------------------------------TTGCCCTCCCAGGCTCCCA
CAAAAACCTGGGCTTTTTCAATGGTGATCCC--TACGTCATTAAGGAGAATAGCCCGCCGAGCCGCCAGCCGGAGAAGCC
GGAACCTTTCTGTAGAGTCGGGAGAGAGAAACGGAAGCACGCCGCGTACCCACCTAGACCGCTGCCAGAGCATGAGCAAT
ACAAGGCCAGCTGTGCGTTTAGGGGCTGCGACACTTGCATGCATGCAT--------GCA--------CGGATACACGCGC
CGAGTGCACGTGCGAGCGCTCAACACCTAGAGCTCTTCTGCCGATGTCCGAT-GTCGATGCCAAATCCTAGCTGCCATGG
AACGAGCTAGGCCACGTAGCACAGTCCGTACGACCCTGCACAAAAAGCTAACGCCATGCCCAATTGCTTGCTCCTGCCTC
ATGCCATGGTGTCGCAGGAAGAGAGAGAGAGAGCGTAC------GCACTGCTGCACACACACGCAGACTCTCGCGGATGG
ATAATCACATGTGCTAGCG---CTGAGAAAAAGAAACATGGAGAAGAAGCTCGTCCAAATCCAAACCCGGGCGGCTCGCT
GACCAAGGCGTCGTCGCCTGAACCTGCGCGCGTTTGCCGACAGGTAGCCGCCACGTGGCCT-GGCGCGGAGACTCGTGGA
GCCCACGGCGTCGCCCATGTGTCCTGCTCTCTCGGCCCCACTCCTTCGTGTCGAGCGGCCTCCTTACTTGGCGCACGCGT
GGGATACCTCGGACGCACTCCCTACACGTCGCCTCGCCGCCGTCTTCTCCGCCCTTCGCTTTTCCACTTCACCTGTATAA
ATATCCGCCTCCCAGTCCCAGATTTT------CCAACACACTCATCGTCAATCT-----ATCTCATCAATGGAGCAGGAG
GTGGTTGCGGGGATGAAGCAGAAGAAGTGCTGCCCGCTCCGGCGGTCGCGCAAGGGCTGCATGAAGGGCAAGGGCGGCCC
GGACAACCAGCAGTGCCCCTTTCGCGGCGTCCGCCAGCGCACCTGGGGCAAGTGGGTCGCCGAGATCCGCGAGCCCAACC
GCGGCGCCCGCCTCTGGCTCGGCACCTTCGCCACCGCGCTCGACGCCGCCCGCGCATACGACGCCGCGGCCAGGGCGCTC
TACGGCGACTGCGCCCGCCTCAACCTCTCGGCGTCGCCGTCCCAGATGCAGCA---CCCTCCAGCGCAAGGCA---GTGG
CGCGAACGGTAATTCGGCGCCGGGGACGCCGTGCTGCTCCTCCAACAACTCCAACTCCAGCGCGTCGACCCCGACCGGGA
CTCCCACGGACATGGACTGCAGTGCCTGGATGCAGCCGTCTTACTGTTACAGCACGGCGGAGGCGCCGGAGGACTTCGAG
GCGTACGTGACGCGACTGCCCAAGGCGGAGGACTTCGGACTGGAGGGGTTCCAGGAGGTGCCTCTGGAGGTGCTGGCCGA
AGCCGGGGGAGGGGTCAGCATCTGGGACCTCAGCATCGCCCCTGACATGGCAGTAGCAGCCGCTTCTTCAGCTGCTGCCA
GTGCCTGCACTGTCCCCCAACAGCCGCTGCAGCAACCCAGCTGCTGAGGTGCAGATCGACGTCGACATAGAAAGTAAGGA
GTTGCCGTGATATATAGTGCATATACAGCATGCGGCATGCTGGTCACTGGCCGTGTTGCATGCAGCTAGCTACGTAGTTG
G-------TAGTATCTGCTTTTTCTCCATCGTCGCAGTAGCATACTAGCATTAATATTGGTGGGCAGGTGAGCGTGCAAG
TGTGTGTATGATATAATCGTGCGTGGGAGTAGGGGTAATGAAATGATCAGTCTAATGGTGTGTGCTGGCGTGCTGCTGAA
GCGGTGCTATTGCAGATCATCCAAAAAACAGCAAGTAAGAGTAGCGACTTGGGGCATCTCCAAGACTCCAACACATATCA
TCTGGCCGACTCCATGGAATTTGCGTCCCTCAGTTAAGGCGGACTTCGATTTTCCAAACAACCGGACACACCGACATA--
------ATTGATTTTAAGGTTGAATTTTACACAACAAAAGATCCTTTAAGGAAACCTAAAAATAATTAGAAAACCATGCT
C-ATACTCCACCCCTCACTTTGGACCCCTGCAAGCAGGAGCC--------ACCGACATGTGCCTTGTTGACATGGTGCGT
GTGCGAGCACCAGCATTCACGTCCACCGTATAAAATGAATTAAAATTTAATCT--TAATTGTATAAAATAATTTAAATTT
ACACTACAGTATAAAATAATTTTATATTTACGCCTACTTAAAAAAACTCAAATCCATTTTATGTTTGAATATAGATCTAT
AAACGTGATTGTATATACATTCCATGGTCGAAAGTGCACTATATGCGTG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------
>chr1A_146
--------------------------------------------------------------------------------
-----------------------------------------------------------------CCTCCGAGGCTCCCA
CAAAAACCTGGGCTTTTTCAATGGTGATCCCTATACGTCATTAAGGAGAATAGCACGCCGAGCCGCCGGCCGGAGAAGCA
-------------------GGGAGAGAGAAACGGAAGCACGCCGCGTACCCACCGAGACCGCTGCCAGAGCATGAGCAAT
ACAAGGCCAGCTGTGCGTTCAGGGGCTGCGACACTTGCATGCATGCATGCATCCACGCA--------CGGATACACGCGC
CGAGTGCACGTGCGAGCGCTCAAAACCTAGAGCTCTTCCGCCGATGTCCGATGGTCGATGCCAAATCCTAGCTGCCATGG
AACGAGCTAGGCCACGTAGCACAGTCCGTACGACCCTGCACAAAA-------GCCATGCCCTATTGCTTGCTC-------
ATGCCATGGTGTCGTCGGAGGAGAGAGAGAGAGAGAGAGCGCGTGCACTGCTG--CACACACGCAGACCCTCGCGGATGG
ATAATCACACATGTGCTAGGCACTGAGAAAAAGAAACATGGAGAAGAAGCTCGTCCAAATCCAAACCCGGGCGGCTCGCT
GACCAAGGCGTCGTCGCCTGAGCCCGCGCGCGTTTGCCGACAGGTAGCCGCCACGTGGCCCCGGCGCGGAGACTCGTGGA
GCCCACGGCGTCGCCCATGTGTCCTGCTCGCGCGGCCCCACCCCTTCGTGTCGAGCGGCCTCCTTACTTGGCGCACGCGT
GGGATACCTCGGACGCACACCCTACACGTCGCCTCGCCGCCGTCTTTCCCGCCCTTCGCTTTTCCACTTCACCTGTATAA
ATATCCGCCTCCCAGTCCCAGATATT------CCAACACACTCATCGTCAATCTATCTCATCTCATCAATGGAGCAGGAG
GTGGTTGCGGGGATGAAGCAGAAGAAGTGCTGCCCGCTCCGGCGGTCGCGCAAGGGCTGCATGAAGGGCAAGGGCGGCCC
GGACAACCAGCAGTGCCCCTTCCGCGGCGTCCGCCAGCGCACCTGGGGCAAGTGGGTCGCCGAGATCCGCGAGCCCAACC
GCGGCGCCCGCCTCTGGCTCGGCACCTTCGCCACCGCGCTCGACGCCGCGCGCGCCTACGACGCCGCGGCCAGGGCGCTC
TACGGCGACTGCGCCCGCCTCAACCTCTCGGCGTCGCCGTCCCAGATGCAGCAGCACCCTCCAGCTCAAGGCAGTGGTGG
CGCCAATGGTAATTCGGCGCCAGGGACACCGTGCTGCTCCTCCAACAACTCCAACTCCAGCGCGTCGACCCCGACCGGGA
CTCCCACGGACATGGACTGCAGCGCCTGGATGCAGCCGTCTTACTGTTACAGCACGGCGGAGGCGCCGGAGGACTTCGAG
GCGTACGTGACGCGACTGCCCAAGGCGGAGGACTTCGGACTGGAGGGGTTCCAGGAGGTGCCCCTGGAAGTGCTGGCCGA
AGCCGGAGGAGGGGTCAGCATATGGGACCTCTCCATCGCCCCTGACATGGCTGCAGCAGCCGCTTCTTCAGCTGCTGCCA
GTGCCTGCACTGTCCCCCAACAGCCGCTGCAGCAACCCAGCTGCTGAGGTCCAGATCGACGTCGACATAGAAAGTAAGGA
GTGGCCGTGATATACAGTGCATATACAGCATGCGGCATGCTGGTCACTGGCCGTGGTGCATGCAGCTAGATAGCTACGTA
GTTAGTACTAGTATTTGCTTTTTCTCCGTCGTCGCAGTAGCATACTAGCATTAATATTGGTGGGCAGGTGAGAGTGCAAG
TGTGTGTATGATATAATCGTGCGTGGGAGCAGGGGTAATGAAATGATCAGTCTAATGGTGTGTGCTG--------CTGCA
GCGGTGCTATTGCAGAT-ATCCGGAAAGCAGCAGGTA--AGTAGTGACTTAGGGCATCTCTAA--------CACAGATCA
TCTGGCTGACTCCATGGAATTTCCGTCCCTCAAATAAGGCGGACTTCGACTTTCCAAACAACCGGGCACACCGACCTTTT
ATTGATATTGATTTTAAGATTAAATTGTACACAAAAGAAGATCCTCGAAGAAAACCTAAAAATAATTAGAAAACCATGCT
CAATACTCCACCCCTCACTTTGGACCCCGGCAAGCAGGAGCCACCGACTGACCGACATGTGCCTTGTTGACATGGTGCGT
ATGCGAGAA-AAGCATTCACGTCCACCGTTTAAAAAAAAATAAAAAAAATTAGTCTTATTGTATAAAATAA---------
-------------------------ATTTAGGTCTACTTAAAAAAACTCAAA-CCATTTTATGTTTCAATACAGATCTAT
ATACGTGATTGTATATACATTCCATGTCCGAAAGTGATCTATATACGTGATTGTATATACATTCGATGTTCAAAA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------
>SNPs
SSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
-----------------S--S-----------------------------------------------------------
------------------S-------------------------------------------------------------
----------S------------------------------------------------SSSSSSSS-------------
--S--------------------S--------------S----------------------------------------S
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S---S-------------------------------------------S--S---------------
------S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------SSSSSS----------S-------S-------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S---------------------------------S--------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
------------------------------------S--------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
----------------------------------------------------------S---------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------S----S--------------------SS-------S---------------SS-------------
------SS-----------S----S------S---S-------------------------------S------------
-----------------------------S------------------------------S--S-----------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_68
------------------------------------------------CCTGTGCTCCCAGTACTGTG------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------
>reverse_1864
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------TTCCATCGTCGCAGTAGCAT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------
