Multiple sequence alignment - TraesCS1D01G243900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G243900 chr1D 100.000 2894 0 0 1 2894 334450082 334452975 0.000000e+00 5345.0
1 TraesCS1D01G243900 chr1D 77.165 254 42 12 2329 2572 398552819 398553066 1.810000e-27 134.0
2 TraesCS1D01G243900 chr1B 91.639 2141 120 22 747 2852 449977065 449979181 0.000000e+00 2907.0
3 TraesCS1D01G243900 chr1B 90.644 2159 151 25 706 2852 449851113 449853232 0.000000e+00 2820.0
4 TraesCS1D01G243900 chr1B 78.445 733 130 15 1186 1907 449737452 449736737 1.220000e-123 453.0
5 TraesCS1D01G243900 chr1B 92.810 306 20 2 31 334 464151983 464151678 2.650000e-120 442.0
6 TraesCS1D01G243900 chr1B 92.823 209 13 1 332 540 449976859 449977065 4.690000e-78 302.0
7 TraesCS1D01G243900 chr1B 89.474 57 6 0 628 684 61669810 61669754 4.000000e-09 73.1
8 TraesCS1D01G243900 chr1A 94.850 1204 46 6 713 1901 432484889 432486091 0.000000e+00 1866.0
9 TraesCS1D01G243900 chr1A 93.484 1197 46 11 713 1901 432338817 432339989 0.000000e+00 1749.0
10 TraesCS1D01G243900 chr1A 89.055 868 69 15 2005 2852 432486130 432486991 0.000000e+00 1053.0
11 TraesCS1D01G243900 chr1A 80.330 727 124 13 1186 1907 432213014 432212302 1.530000e-147 532.0
12 TraesCS1D01G243900 chr1A 96.400 250 8 1 2005 2254 432340028 432340276 7.460000e-111 411.0
13 TraesCS1D01G243900 chr1A 87.755 98 12 0 2689 2786 432367346 432367443 6.550000e-22 115.0
14 TraesCS1D01G243900 chr1A 92.727 55 3 1 1929 1983 432339979 432340032 8.600000e-11 78.7
15 TraesCS1D01G243900 chr1A 92.727 55 3 1 1929 1983 432486081 432486134 8.600000e-11 78.7
16 TraesCS1D01G243900 chr2D 96.417 307 10 1 29 334 482892469 482892775 3.330000e-139 505.0
17 TraesCS1D01G243900 chr2D 92.222 90 7 0 332 421 388338445 388338356 8.420000e-26 128.0
18 TraesCS1D01G243900 chr2D 92.222 90 7 0 332 421 388383332 388383243 8.420000e-26 128.0
19 TraesCS1D01G243900 chr5B 91.429 315 23 3 26 336 207576288 207575974 2.060000e-116 429.0
20 TraesCS1D01G243900 chr5B 91.475 305 22 4 34 336 631895070 631895372 1.600000e-112 416.0
21 TraesCS1D01G243900 chr6D 91.290 310 23 4 28 334 386276146 386276454 1.240000e-113 420.0
22 TraesCS1D01G243900 chr6D 86.364 88 11 1 332 419 96654573 96654659 8.540000e-16 95.3
23 TraesCS1D01G243900 chr5D 90.764 314 27 2 23 334 242637863 242638176 4.460000e-113 418.0
24 TraesCS1D01G243900 chr4A 90.354 311 29 1 27 336 514634711 514634401 9.650000e-110 407.0
25 TraesCS1D01G243900 chr6B 90.159 315 26 5 23 334 473057709 473058021 3.470000e-109 405.0
26 TraesCS1D01G243900 chr5A 89.375 320 32 2 19 337 630124095 630123777 4.490000e-108 401.0
27 TraesCS1D01G243900 chr7D 92.222 90 7 0 332 421 328808000 328808089 8.420000e-26 128.0
28 TraesCS1D01G243900 chr2A 92.222 90 7 0 332 421 123306960 123306871 8.420000e-26 128.0
29 TraesCS1D01G243900 chr3A 91.304 92 8 0 332 423 144495385 144495476 3.030000e-25 126.0
30 TraesCS1D01G243900 chr3B 90.909 88 8 0 334 421 188227749 188227836 5.070000e-23 119.0
31 TraesCS1D01G243900 chr3D 90.789 76 6 1 349 424 560120183 560120109 1.830000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G243900 chr1D 334450082 334452975 2893 False 5345.000000 5345 100.000000 1 2894 1 chr1D.!!$F1 2893
1 TraesCS1D01G243900 chr1B 449851113 449853232 2119 False 2820.000000 2820 90.644000 706 2852 1 chr1B.!!$F1 2146
2 TraesCS1D01G243900 chr1B 449976859 449979181 2322 False 1604.500000 2907 92.231000 332 2852 2 chr1B.!!$F2 2520
3 TraesCS1D01G243900 chr1B 449736737 449737452 715 True 453.000000 453 78.445000 1186 1907 1 chr1B.!!$R2 721
4 TraesCS1D01G243900 chr1A 432484889 432486991 2102 False 999.233333 1866 92.210667 713 2852 3 chr1A.!!$F3 2139
5 TraesCS1D01G243900 chr1A 432338817 432340276 1459 False 746.233333 1749 94.203667 713 2254 3 chr1A.!!$F2 1541
6 TraesCS1D01G243900 chr1A 432212302 432213014 712 True 532.000000 532 80.330000 1186 1907 1 chr1A.!!$R1 721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 783 0.518636 CCACACAGACAAAGCATCGG 59.481 55.000 0.00 0.00 0.00 4.18 F
1209 1238 2.016318 CATTTCGCCATGGCTAACTCA 58.984 47.619 33.07 15.08 39.32 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 1928 0.034896 CCGTTGTAGCTCAGGTGGTT 59.965 55.0 0.0 0.0 0.0 3.67 R
2834 2910 0.104855 GCGAGATGGTGGCATGTAGA 59.895 55.0 0.0 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.904205 TCTTATAGGCAACCTTATACCTAAGC 58.096 38.462 0.00 0.00 38.25 3.09
26 27 7.733501 TCTTATAGGCAACCTTATACCTAAGCT 59.266 37.037 0.00 0.00 38.25 3.74
27 28 6.765355 ATAGGCAACCTTATACCTAAGCTT 57.235 37.500 3.48 3.48 38.25 3.74
28 29 7.867160 ATAGGCAACCTTATACCTAAGCTTA 57.133 36.000 5.94 5.94 38.25 3.09
29 30 6.570654 AGGCAACCTTATACCTAAGCTTAA 57.429 37.500 7.74 0.00 34.21 1.85
30 31 6.592870 AGGCAACCTTATACCTAAGCTTAAG 58.407 40.000 7.74 3.91 34.21 1.85
31 32 5.238868 GGCAACCTTATACCTAAGCTTAAGC 59.761 44.000 20.09 20.09 42.49 3.09
32 33 5.238868 GCAACCTTATACCTAAGCTTAAGCC 59.761 44.000 23.71 6.33 43.38 4.35
33 34 6.592870 CAACCTTATACCTAAGCTTAAGCCT 58.407 40.000 23.71 14.01 43.38 4.58
34 35 6.422344 ACCTTATACCTAAGCTTAAGCCTC 57.578 41.667 23.71 0.00 43.38 4.70
35 36 5.307456 ACCTTATACCTAAGCTTAAGCCTCC 59.693 44.000 23.71 0.00 43.38 4.30
36 37 5.544562 CCTTATACCTAAGCTTAAGCCTCCT 59.455 44.000 23.71 8.80 43.38 3.69
37 38 6.043358 CCTTATACCTAAGCTTAAGCCTCCTT 59.957 42.308 23.71 13.65 43.38 3.36
38 39 5.977821 ATACCTAAGCTTAAGCCTCCTTT 57.022 39.130 23.71 13.28 43.38 3.11
39 40 3.956744 ACCTAAGCTTAAGCCTCCTTTG 58.043 45.455 23.71 11.82 43.38 2.77
40 41 3.282885 CCTAAGCTTAAGCCTCCTTTGG 58.717 50.000 23.71 16.47 43.38 3.28
41 42 2.980246 AAGCTTAAGCCTCCTTTGGT 57.020 45.000 23.71 0.00 43.38 3.67
42 43 2.980246 AGCTTAAGCCTCCTTTGGTT 57.020 45.000 23.71 0.00 43.38 3.67
43 44 3.244887 AGCTTAAGCCTCCTTTGGTTT 57.755 42.857 23.71 0.00 43.38 3.27
44 45 2.893489 AGCTTAAGCCTCCTTTGGTTTG 59.107 45.455 23.71 0.00 43.38 2.93
45 46 2.029020 GCTTAAGCCTCCTTTGGTTTGG 60.029 50.000 17.00 0.00 32.78 3.28
46 47 3.496331 CTTAAGCCTCCTTTGGTTTGGA 58.504 45.455 0.00 0.00 32.78 3.53
47 48 2.001076 AAGCCTCCTTTGGTTTGGAG 57.999 50.000 0.00 0.00 46.91 3.86
54 55 5.139435 CTCCTTTGGTTTGGAGGAATTTC 57.861 43.478 0.00 0.00 44.44 2.17
55 56 4.551671 TCCTTTGGTTTGGAGGAATTTCA 58.448 39.130 0.00 0.00 36.67 2.69
56 57 4.965532 TCCTTTGGTTTGGAGGAATTTCAA 59.034 37.500 0.00 0.00 36.67 2.69
57 58 5.426833 TCCTTTGGTTTGGAGGAATTTCAAA 59.573 36.000 0.00 0.00 36.67 2.69
58 59 5.759763 CCTTTGGTTTGGAGGAATTTCAAAG 59.240 40.000 0.00 0.00 39.36 2.77
59 60 4.953940 TGGTTTGGAGGAATTTCAAAGG 57.046 40.909 0.00 0.00 32.03 3.11
60 61 4.551671 TGGTTTGGAGGAATTTCAAAGGA 58.448 39.130 0.00 0.00 32.03 3.36
61 62 5.154418 TGGTTTGGAGGAATTTCAAAGGAT 58.846 37.500 0.00 0.00 32.03 3.24
62 63 6.318913 TGGTTTGGAGGAATTTCAAAGGATA 58.681 36.000 0.00 0.00 32.03 2.59
63 64 6.959366 TGGTTTGGAGGAATTTCAAAGGATAT 59.041 34.615 0.00 0.00 32.03 1.63
64 65 8.119246 TGGTTTGGAGGAATTTCAAAGGATATA 58.881 33.333 0.00 0.00 32.03 0.86
65 66 9.147732 GGTTTGGAGGAATTTCAAAGGATATAT 57.852 33.333 0.00 0.00 32.03 0.86
104 105 9.758651 TCTTGTAGAAATTTTTCCTTTAAAGCC 57.241 29.630 9.86 0.00 37.92 4.35
105 106 8.896320 TTGTAGAAATTTTTCCTTTAAAGCCC 57.104 30.769 9.86 0.00 37.92 5.19
106 107 8.257602 TGTAGAAATTTTTCCTTTAAAGCCCT 57.742 30.769 9.86 0.00 37.92 5.19
107 108 8.710239 TGTAGAAATTTTTCCTTTAAAGCCCTT 58.290 29.630 9.86 0.00 37.92 3.95
108 109 9.555727 GTAGAAATTTTTCCTTTAAAGCCCTTT 57.444 29.630 9.86 3.58 37.92 3.11
109 110 8.450578 AGAAATTTTTCCTTTAAAGCCCTTTG 57.549 30.769 9.86 0.00 37.92 2.77
110 111 7.502226 AGAAATTTTTCCTTTAAAGCCCTTTGG 59.498 33.333 9.86 0.00 37.92 3.28
111 112 5.702065 TTTTTCCTTTAAAGCCCTTTGGT 57.298 34.783 9.86 0.00 34.23 3.67
112 113 5.702065 TTTTCCTTTAAAGCCCTTTGGTT 57.298 34.783 9.86 0.00 35.85 3.67
113 114 4.948341 TTCCTTTAAAGCCCTTTGGTTC 57.052 40.909 9.86 0.00 32.32 3.62
114 115 3.917300 TCCTTTAAAGCCCTTTGGTTCA 58.083 40.909 9.86 0.00 32.32 3.18
115 116 4.488770 TCCTTTAAAGCCCTTTGGTTCAT 58.511 39.130 9.86 0.00 32.32 2.57
116 117 5.646215 TCCTTTAAAGCCCTTTGGTTCATA 58.354 37.500 9.86 0.00 32.32 2.15
117 118 5.714806 TCCTTTAAAGCCCTTTGGTTCATAG 59.285 40.000 9.86 0.00 32.32 2.23
118 119 5.105351 CCTTTAAAGCCCTTTGGTTCATAGG 60.105 44.000 9.86 0.00 33.40 2.57
119 120 3.825908 AAAGCCCTTTGGTTCATAGGA 57.174 42.857 6.07 0.00 35.14 2.94
120 121 3.825908 AAGCCCTTTGGTTCATAGGAA 57.174 42.857 6.07 0.00 35.14 3.36
121 122 4.337264 AAGCCCTTTGGTTCATAGGAAT 57.663 40.909 6.07 0.00 35.14 3.01
122 123 3.635591 AGCCCTTTGGTTCATAGGAATG 58.364 45.455 6.07 0.00 35.14 2.67
123 124 2.695147 GCCCTTTGGTTCATAGGAATGG 59.305 50.000 6.07 0.00 35.14 3.16
124 125 3.627237 GCCCTTTGGTTCATAGGAATGGA 60.627 47.826 6.07 0.00 35.14 3.41
125 126 4.808042 CCCTTTGGTTCATAGGAATGGAT 58.192 43.478 6.07 0.00 35.14 3.41
126 127 5.211201 CCCTTTGGTTCATAGGAATGGATT 58.789 41.667 6.07 0.00 35.14 3.01
127 128 5.302823 CCCTTTGGTTCATAGGAATGGATTC 59.697 44.000 6.07 0.00 35.14 2.52
161 162 3.493767 GGATTGGTTCCTATCCTCCAC 57.506 52.381 19.71 0.00 41.78 4.02
162 163 2.777692 GGATTGGTTCCTATCCTCCACA 59.222 50.000 19.71 0.00 41.78 4.17
163 164 3.395941 GGATTGGTTCCTATCCTCCACAT 59.604 47.826 19.71 0.00 41.78 3.21
164 165 4.141158 GGATTGGTTCCTATCCTCCACATT 60.141 45.833 19.71 0.00 41.78 2.71
165 166 4.946160 TTGGTTCCTATCCTCCACATTT 57.054 40.909 0.00 0.00 0.00 2.32
166 167 4.946160 TGGTTCCTATCCTCCACATTTT 57.054 40.909 0.00 0.00 0.00 1.82
167 168 6.395780 TTGGTTCCTATCCTCCACATTTTA 57.604 37.500 0.00 0.00 0.00 1.52
168 169 6.395780 TGGTTCCTATCCTCCACATTTTAA 57.604 37.500 0.00 0.00 0.00 1.52
169 170 6.795590 TGGTTCCTATCCTCCACATTTTAAA 58.204 36.000 0.00 0.00 0.00 1.52
170 171 6.889722 TGGTTCCTATCCTCCACATTTTAAAG 59.110 38.462 0.00 0.00 0.00 1.85
171 172 6.321435 GGTTCCTATCCTCCACATTTTAAAGG 59.679 42.308 0.00 0.00 0.00 3.11
172 173 6.901615 TCCTATCCTCCACATTTTAAAGGA 57.098 37.500 0.00 0.00 40.27 3.36
173 174 7.278724 TCCTATCCTCCACATTTTAAAGGAA 57.721 36.000 0.00 0.00 39.47 3.36
174 175 7.704727 TCCTATCCTCCACATTTTAAAGGAAA 58.295 34.615 0.00 0.00 39.47 3.13
175 176 8.174085 TCCTATCCTCCACATTTTAAAGGAAAA 58.826 33.333 0.00 0.00 39.47 2.29
176 177 8.981659 CCTATCCTCCACATTTTAAAGGAAAAT 58.018 33.333 0.00 0.00 46.60 1.82
180 181 9.990360 TCCTCCACATTTTAAAGGAAAATAAAC 57.010 29.630 0.00 0.00 44.35 2.01
181 182 9.771534 CCTCCACATTTTAAAGGAAAATAAACA 57.228 29.630 0.00 0.00 44.35 2.83
193 194 8.814038 AAGGAAAATAAACATGAGCATAGACT 57.186 30.769 0.00 0.00 0.00 3.24
194 195 8.443953 AGGAAAATAAACATGAGCATAGACTC 57.556 34.615 0.00 0.00 37.19 3.36
226 227 9.439500 AAAAATTCCTATGATGTGAACCAAATG 57.561 29.630 0.00 0.00 0.00 2.32
227 228 7.959658 AATTCCTATGATGTGAACCAAATGA 57.040 32.000 0.00 0.00 0.00 2.57
228 229 6.757897 TTCCTATGATGTGAACCAAATGAC 57.242 37.500 0.00 0.00 0.00 3.06
229 230 5.814481 TCCTATGATGTGAACCAAATGACA 58.186 37.500 0.00 0.00 0.00 3.58
230 231 6.425735 TCCTATGATGTGAACCAAATGACAT 58.574 36.000 0.00 0.00 0.00 3.06
231 232 6.543465 TCCTATGATGTGAACCAAATGACATC 59.457 38.462 0.00 0.00 43.31 3.06
232 233 6.544931 CCTATGATGTGAACCAAATGACATCT 59.455 38.462 0.00 0.00 43.38 2.90
233 234 5.885230 TGATGTGAACCAAATGACATCTC 57.115 39.130 0.00 0.00 43.38 2.75
234 235 5.563592 TGATGTGAACCAAATGACATCTCT 58.436 37.500 0.00 0.00 43.38 3.10
235 236 6.005823 TGATGTGAACCAAATGACATCTCTT 58.994 36.000 0.00 0.00 43.38 2.85
236 237 6.491062 TGATGTGAACCAAATGACATCTCTTT 59.509 34.615 0.00 0.00 43.38 2.52
237 238 6.713762 TGTGAACCAAATGACATCTCTTTT 57.286 33.333 0.00 0.00 0.00 2.27
238 239 6.738114 TGTGAACCAAATGACATCTCTTTTC 58.262 36.000 0.00 0.00 0.00 2.29
239 240 6.152379 GTGAACCAAATGACATCTCTTTTCC 58.848 40.000 0.00 0.00 0.00 3.13
240 241 6.015940 GTGAACCAAATGACATCTCTTTTCCT 60.016 38.462 0.00 0.00 0.00 3.36
241 242 7.174946 GTGAACCAAATGACATCTCTTTTCCTA 59.825 37.037 0.00 0.00 0.00 2.94
242 243 7.723616 TGAACCAAATGACATCTCTTTTCCTAA 59.276 33.333 0.00 0.00 0.00 2.69
243 244 8.655935 AACCAAATGACATCTCTTTTCCTAAT 57.344 30.769 0.00 0.00 0.00 1.73
244 245 8.286191 ACCAAATGACATCTCTTTTCCTAATC 57.714 34.615 0.00 0.00 0.00 1.75
245 246 7.890127 ACCAAATGACATCTCTTTTCCTAATCA 59.110 33.333 0.00 0.00 0.00 2.57
246 247 8.910944 CCAAATGACATCTCTTTTCCTAATCAT 58.089 33.333 0.00 0.00 0.00 2.45
250 251 9.995003 ATGACATCTCTTTTCCTAATCATACTC 57.005 33.333 0.00 0.00 0.00 2.59
251 252 8.981659 TGACATCTCTTTTCCTAATCATACTCA 58.018 33.333 0.00 0.00 0.00 3.41
252 253 9.995003 GACATCTCTTTTCCTAATCATACTCAT 57.005 33.333 0.00 0.00 0.00 2.90
256 257 9.883293 TCTCTTTTCCTAATCATACTCATAGGA 57.117 33.333 0.00 0.00 41.58 2.94
290 291 9.911788 ATATGTCATCTCATTTCCTACAAGTTT 57.088 29.630 0.00 0.00 0.00 2.66
291 292 7.672983 TGTCATCTCATTTCCTACAAGTTTC 57.327 36.000 0.00 0.00 0.00 2.78
292 293 6.655003 TGTCATCTCATTTCCTACAAGTTTCC 59.345 38.462 0.00 0.00 0.00 3.13
293 294 6.881602 GTCATCTCATTTCCTACAAGTTTCCT 59.118 38.462 0.00 0.00 0.00 3.36
294 295 8.041323 GTCATCTCATTTCCTACAAGTTTCCTA 58.959 37.037 0.00 0.00 0.00 2.94
295 296 8.772250 TCATCTCATTTCCTACAAGTTTCCTAT 58.228 33.333 0.00 0.00 0.00 2.57
296 297 9.401058 CATCTCATTTCCTACAAGTTTCCTATT 57.599 33.333 0.00 0.00 0.00 1.73
297 298 9.620259 ATCTCATTTCCTACAAGTTTCCTATTC 57.380 33.333 0.00 0.00 0.00 1.75
298 299 8.047310 TCTCATTTCCTACAAGTTTCCTATTCC 58.953 37.037 0.00 0.00 0.00 3.01
299 300 7.928873 TCATTTCCTACAAGTTTCCTATTCCT 58.071 34.615 0.00 0.00 0.00 3.36
300 301 7.829211 TCATTTCCTACAAGTTTCCTATTCCTG 59.171 37.037 0.00 0.00 0.00 3.86
301 302 6.697641 TTCCTACAAGTTTCCTATTCCTGT 57.302 37.500 0.00 0.00 0.00 4.00
302 303 6.049955 TCCTACAAGTTTCCTATTCCTGTG 57.950 41.667 0.00 0.00 0.00 3.66
303 304 5.783360 TCCTACAAGTTTCCTATTCCTGTGA 59.217 40.000 0.00 0.00 0.00 3.58
304 305 6.443849 TCCTACAAGTTTCCTATTCCTGTGAT 59.556 38.462 0.00 0.00 0.00 3.06
305 306 7.622081 TCCTACAAGTTTCCTATTCCTGTGATA 59.378 37.037 0.00 0.00 0.00 2.15
306 307 8.265055 CCTACAAGTTTCCTATTCCTGTGATAA 58.735 37.037 0.00 0.00 0.00 1.75
307 308 9.838339 CTACAAGTTTCCTATTCCTGTGATAAT 57.162 33.333 0.00 0.00 0.00 1.28
308 309 8.738645 ACAAGTTTCCTATTCCTGTGATAATC 57.261 34.615 0.00 0.00 0.00 1.75
309 310 7.775561 ACAAGTTTCCTATTCCTGTGATAATCC 59.224 37.037 0.00 0.00 0.00 3.01
310 311 7.698163 AGTTTCCTATTCCTGTGATAATCCT 57.302 36.000 0.00 0.00 0.00 3.24
311 312 8.798975 AGTTTCCTATTCCTGTGATAATCCTA 57.201 34.615 0.00 0.00 0.00 2.94
312 313 9.398921 AGTTTCCTATTCCTGTGATAATCCTAT 57.601 33.333 0.00 0.00 0.00 2.57
313 314 9.660180 GTTTCCTATTCCTGTGATAATCCTATC 57.340 37.037 0.00 0.00 35.40 2.08
314 315 8.972662 TTCCTATTCCTGTGATAATCCTATCA 57.027 34.615 0.00 0.00 41.36 2.15
315 316 9.566331 TTCCTATTCCTGTGATAATCCTATCAT 57.434 33.333 0.00 0.00 44.48 2.45
322 323 8.762645 TCCTGTGATAATCCTATCATATGAACC 58.237 37.037 9.99 0.00 44.48 3.62
323 324 8.542926 CCTGTGATAATCCTATCATATGAACCA 58.457 37.037 9.99 0.00 44.48 3.67
324 325 9.948964 CTGTGATAATCCTATCATATGAACCAA 57.051 33.333 9.99 0.00 44.48 3.67
335 336 9.342308 CTATCATATGAACCAAAGAAAGCCTTA 57.658 33.333 9.99 0.00 34.00 2.69
342 343 7.601856 TGAACCAAAGAAAGCCTTATTGTATG 58.398 34.615 0.00 0.00 34.00 2.39
343 344 7.450014 TGAACCAAAGAAAGCCTTATTGTATGA 59.550 33.333 0.00 0.00 34.00 2.15
347 348 6.442513 AAGAAAGCCTTATTGTATGAGTGC 57.557 37.500 0.00 0.00 32.24 4.40
357 358 8.367911 CCTTATTGTATGAGTGCCTATAAGTGA 58.632 37.037 0.00 0.00 0.00 3.41
367 368 9.541884 TGAGTGCCTATAAGTGATGGTTATATA 57.458 33.333 0.00 0.00 0.00 0.86
460 461 3.627395 ATGTCATTGGTCCACATACGT 57.373 42.857 0.00 0.00 0.00 3.57
485 486 4.038883 TGTGATAGATGCTCCTGATCTGTG 59.961 45.833 0.00 0.00 32.32 3.66
515 516 3.342377 TTGCCATGTCCGTAATCTTGA 57.658 42.857 0.00 0.00 0.00 3.02
535 536 6.489022 TCTTGAGATGATGCTAATTTGGATGG 59.511 38.462 0.00 0.00 0.00 3.51
540 541 7.520798 AGATGATGCTAATTTGGATGGAGTTA 58.479 34.615 0.00 0.00 0.00 2.24
541 542 6.942532 TGATGCTAATTTGGATGGAGTTAC 57.057 37.500 0.00 0.00 0.00 2.50
543 544 6.543465 TGATGCTAATTTGGATGGAGTTACTG 59.457 38.462 0.00 0.00 0.00 2.74
544 545 5.815581 TGCTAATTTGGATGGAGTTACTGT 58.184 37.500 0.00 0.00 0.00 3.55
545 546 5.880332 TGCTAATTTGGATGGAGTTACTGTC 59.120 40.000 0.00 0.00 0.00 3.51
546 547 5.880332 GCTAATTTGGATGGAGTTACTGTCA 59.120 40.000 0.00 0.00 0.00 3.58
547 548 6.183360 GCTAATTTGGATGGAGTTACTGTCAC 60.183 42.308 0.00 0.00 0.00 3.67
548 549 4.974645 TTTGGATGGAGTTACTGTCACT 57.025 40.909 0.00 0.00 0.00 3.41
549 550 4.974645 TTGGATGGAGTTACTGTCACTT 57.025 40.909 0.00 0.00 0.00 3.16
550 551 4.974645 TGGATGGAGTTACTGTCACTTT 57.025 40.909 0.00 0.00 0.00 2.66
551 552 6.428083 TTGGATGGAGTTACTGTCACTTTA 57.572 37.500 0.00 0.00 0.00 1.85
552 553 5.790593 TGGATGGAGTTACTGTCACTTTAC 58.209 41.667 0.00 0.00 0.00 2.01
553 554 5.305902 TGGATGGAGTTACTGTCACTTTACA 59.694 40.000 0.00 0.00 0.00 2.41
554 555 6.013725 TGGATGGAGTTACTGTCACTTTACAT 60.014 38.462 0.00 2.68 0.00 2.29
555 556 6.313905 GGATGGAGTTACTGTCACTTTACATG 59.686 42.308 10.51 0.00 0.00 3.21
556 557 6.169557 TGGAGTTACTGTCACTTTACATGT 57.830 37.500 2.69 2.69 0.00 3.21
557 558 7.292713 TGGAGTTACTGTCACTTTACATGTA 57.707 36.000 0.08 0.08 0.00 2.29
558 559 7.903145 TGGAGTTACTGTCACTTTACATGTAT 58.097 34.615 6.36 0.00 0.00 2.29
559 560 8.372459 TGGAGTTACTGTCACTTTACATGTATT 58.628 33.333 6.36 0.00 0.00 1.89
560 561 9.216117 GGAGTTACTGTCACTTTACATGTATTT 57.784 33.333 6.36 0.00 0.00 1.40
568 569 9.632807 TGTCACTTTACATGTATTTTAATTGCC 57.367 29.630 6.36 0.00 0.00 4.52
569 570 9.632807 GTCACTTTACATGTATTTTAATTGCCA 57.367 29.630 6.36 0.00 0.00 4.92
588 589 6.959639 TGCCATATTTAATCAACTTCCTCC 57.040 37.500 0.00 0.00 0.00 4.30
589 590 6.430864 TGCCATATTTAATCAACTTCCTCCA 58.569 36.000 0.00 0.00 0.00 3.86
590 591 7.068702 TGCCATATTTAATCAACTTCCTCCAT 58.931 34.615 0.00 0.00 0.00 3.41
591 592 7.231317 TGCCATATTTAATCAACTTCCTCCATC 59.769 37.037 0.00 0.00 0.00 3.51
592 593 7.309438 GCCATATTTAATCAACTTCCTCCATCC 60.309 40.741 0.00 0.00 0.00 3.51
593 594 7.177392 CCATATTTAATCAACTTCCTCCATCCC 59.823 40.741 0.00 0.00 0.00 3.85
594 595 5.528600 TTTAATCAACTTCCTCCATCCCA 57.471 39.130 0.00 0.00 0.00 4.37
595 596 5.528600 TTAATCAACTTCCTCCATCCCAA 57.471 39.130 0.00 0.00 0.00 4.12
596 597 4.402616 AATCAACTTCCTCCATCCCAAA 57.597 40.909 0.00 0.00 0.00 3.28
597 598 3.893753 TCAACTTCCTCCATCCCAAAA 57.106 42.857 0.00 0.00 0.00 2.44
598 599 4.402616 TCAACTTCCTCCATCCCAAAAT 57.597 40.909 0.00 0.00 0.00 1.82
599 600 4.750941 TCAACTTCCTCCATCCCAAAATT 58.249 39.130 0.00 0.00 0.00 1.82
600 601 5.898120 TCAACTTCCTCCATCCCAAAATTA 58.102 37.500 0.00 0.00 0.00 1.40
601 602 6.318913 TCAACTTCCTCCATCCCAAAATTAA 58.681 36.000 0.00 0.00 0.00 1.40
602 603 6.437162 TCAACTTCCTCCATCCCAAAATTAAG 59.563 38.462 0.00 0.00 0.00 1.85
603 604 5.903923 ACTTCCTCCATCCCAAAATTAAGT 58.096 37.500 0.00 0.00 0.00 2.24
604 605 5.716703 ACTTCCTCCATCCCAAAATTAAGTG 59.283 40.000 0.00 0.00 0.00 3.16
605 606 5.528600 TCCTCCATCCCAAAATTAAGTGA 57.471 39.130 0.00 0.00 0.00 3.41
606 607 5.261216 TCCTCCATCCCAAAATTAAGTGAC 58.739 41.667 0.00 0.00 0.00 3.67
607 608 5.015178 TCCTCCATCCCAAAATTAAGTGACT 59.985 40.000 0.00 0.00 0.00 3.41
608 609 5.358160 CCTCCATCCCAAAATTAAGTGACTC 59.642 44.000 0.00 0.00 0.00 3.36
609 610 5.886609 TCCATCCCAAAATTAAGTGACTCA 58.113 37.500 0.00 0.00 0.00 3.41
610 611 6.310941 TCCATCCCAAAATTAAGTGACTCAA 58.689 36.000 0.00 0.00 0.00 3.02
611 612 6.953520 TCCATCCCAAAATTAAGTGACTCAAT 59.046 34.615 0.00 0.00 0.00 2.57
612 613 7.454380 TCCATCCCAAAATTAAGTGACTCAATT 59.546 33.333 0.00 0.00 0.00 2.32
613 614 8.096414 CCATCCCAAAATTAAGTGACTCAATTT 58.904 33.333 0.60 0.60 34.24 1.82
614 615 9.492973 CATCCCAAAATTAAGTGACTCAATTTT 57.507 29.630 12.28 12.28 40.62 1.82
627 628 9.965902 AGTGACTCAATTTTATATTTCCTCTGT 57.034 29.630 0.00 0.00 0.00 3.41
664 665 9.436957 AAGTGTTTATAGATCACTAAAGTGGTG 57.563 33.333 10.11 0.00 45.65 4.17
665 666 8.812972 AGTGTTTATAGATCACTAAAGTGGTGA 58.187 33.333 10.11 0.25 45.65 4.02
666 667 8.870879 GTGTTTATAGATCACTAAAGTGGTGAC 58.129 37.037 10.11 0.00 44.82 3.67
667 668 8.038944 TGTTTATAGATCACTAAAGTGGTGACC 58.961 37.037 10.11 0.00 44.82 4.02
668 669 7.973048 TTATAGATCACTAAAGTGGTGACCT 57.027 36.000 10.11 0.00 44.82 3.85
669 670 9.483489 TTTATAGATCACTAAAGTGGTGACCTA 57.517 33.333 10.11 0.00 44.82 3.08
670 671 7.973048 ATAGATCACTAAAGTGGTGACCTAA 57.027 36.000 10.11 0.00 41.43 2.69
671 672 6.681729 AGATCACTAAAGTGGTGACCTAAA 57.318 37.500 10.11 0.00 44.82 1.85
672 673 7.259088 AGATCACTAAAGTGGTGACCTAAAT 57.741 36.000 10.11 0.00 44.82 1.40
673 674 7.106239 AGATCACTAAAGTGGTGACCTAAATG 58.894 38.462 10.11 0.00 44.82 2.32
674 675 5.001232 TCACTAAAGTGGTGACCTAAATGC 58.999 41.667 10.11 0.00 45.65 3.56
675 676 5.003804 CACTAAAGTGGTGACCTAAATGCT 58.996 41.667 2.11 0.00 42.10 3.79
676 677 5.122396 CACTAAAGTGGTGACCTAAATGCTC 59.878 44.000 2.11 0.00 42.10 4.26
677 678 4.373156 AAAGTGGTGACCTAAATGCTCT 57.627 40.909 2.11 0.00 0.00 4.09
678 679 4.373156 AAGTGGTGACCTAAATGCTCTT 57.627 40.909 2.11 0.00 0.00 2.85
679 680 5.499004 AAGTGGTGACCTAAATGCTCTTA 57.501 39.130 2.11 0.00 0.00 2.10
680 681 5.700402 AGTGGTGACCTAAATGCTCTTAT 57.300 39.130 2.11 0.00 0.00 1.73
681 682 6.808321 AGTGGTGACCTAAATGCTCTTATA 57.192 37.500 2.11 0.00 0.00 0.98
682 683 7.380423 AGTGGTGACCTAAATGCTCTTATAT 57.620 36.000 2.11 0.00 0.00 0.86
683 684 7.806180 AGTGGTGACCTAAATGCTCTTATATT 58.194 34.615 2.11 0.00 0.00 1.28
684 685 7.716998 AGTGGTGACCTAAATGCTCTTATATTG 59.283 37.037 2.11 0.00 0.00 1.90
685 686 6.998074 TGGTGACCTAAATGCTCTTATATTGG 59.002 38.462 2.11 0.00 0.00 3.16
686 687 6.431234 GGTGACCTAAATGCTCTTATATTGGG 59.569 42.308 0.00 0.00 0.00 4.12
687 688 7.224297 GTGACCTAAATGCTCTTATATTGGGA 58.776 38.462 0.00 0.00 0.00 4.37
688 689 7.389053 GTGACCTAAATGCTCTTATATTGGGAG 59.611 40.741 0.00 0.00 0.00 4.30
689 690 7.292356 TGACCTAAATGCTCTTATATTGGGAGA 59.708 37.037 0.00 0.00 0.00 3.71
690 691 7.684529 ACCTAAATGCTCTTATATTGGGAGAG 58.315 38.462 0.00 0.00 39.86 3.20
691 692 7.514127 ACCTAAATGCTCTTATATTGGGAGAGA 59.486 37.037 3.93 0.00 39.36 3.10
692 693 8.040132 CCTAAATGCTCTTATATTGGGAGAGAG 58.960 40.741 3.93 0.00 39.36 3.20
693 694 7.385894 AAATGCTCTTATATTGGGAGAGAGT 57.614 36.000 3.93 0.00 39.36 3.24
694 695 8.497910 AAATGCTCTTATATTGGGAGAGAGTA 57.502 34.615 3.93 0.00 39.36 2.59
695 696 6.902771 TGCTCTTATATTGGGAGAGAGTAC 57.097 41.667 3.93 0.00 39.36 2.73
696 697 6.615617 TGCTCTTATATTGGGAGAGAGTACT 58.384 40.000 0.00 0.00 39.36 2.73
697 698 7.756614 TGCTCTTATATTGGGAGAGAGTACTA 58.243 38.462 0.00 0.00 39.36 1.82
698 699 8.225416 TGCTCTTATATTGGGAGAGAGTACTAA 58.775 37.037 0.00 0.00 39.36 2.24
699 700 8.517056 GCTCTTATATTGGGAGAGAGTACTAAC 58.483 40.741 0.00 0.00 39.36 2.34
700 701 9.575868 CTCTTATATTGGGAGAGAGTACTAACA 57.424 37.037 0.00 0.00 39.36 2.41
782 783 0.518636 CCACACAGACAAAGCATCGG 59.481 55.000 0.00 0.00 0.00 4.18
1209 1238 2.016318 CATTTCGCCATGGCTAACTCA 58.984 47.619 33.07 15.08 39.32 3.41
1210 1239 2.192664 TTTCGCCATGGCTAACTCAA 57.807 45.000 33.07 11.84 39.32 3.02
1942 1986 4.574013 GTCTCATGGCTGAATCAACTAAGG 59.426 45.833 0.00 0.00 0.00 2.69
2052 2096 4.326548 CGATTTCTTTCGGTTACCTCTCAC 59.673 45.833 0.00 0.00 35.50 3.51
2067 2111 4.908481 ACCTCTCACCTTTAGTTTCCTTCT 59.092 41.667 0.00 0.00 0.00 2.85
2204 2250 9.672086 TGGTTTGAAAGAGTATAAAAATGTTCG 57.328 29.630 0.00 0.00 0.00 3.95
2216 2262 5.629079 AAAAATGTTCGAGGTCCTTGATC 57.371 39.130 9.82 9.67 0.00 2.92
2222 2268 2.808919 TCGAGGTCCTTGATCTCTGTT 58.191 47.619 4.51 0.00 37.63 3.16
2353 2400 8.462811 CAATAGTGTCTCTTAGAGCAACTCTAA 58.537 37.037 16.22 14.56 46.70 2.10
2371 2418 6.723298 CTCTAACAGAGTCCCATCTTATGT 57.277 41.667 0.00 0.00 37.57 2.29
2387 2441 4.278919 TCTTATGTGCCACAATGCATATGG 59.721 41.667 20.76 20.76 42.18 2.74
2414 2469 1.826720 TCCATTTGCATTTGGAGGCTC 59.173 47.619 12.78 5.78 37.10 4.70
2436 2491 2.050985 GGCAGCACGCAAACTCAC 60.051 61.111 0.00 0.00 45.17 3.51
2446 2501 1.136529 CGCAAACTCACAGTCGTCATG 60.137 52.381 0.00 0.00 0.00 3.07
2448 2503 3.057019 GCAAACTCACAGTCGTCATGTA 58.943 45.455 0.00 0.00 0.00 2.29
2498 2562 4.181578 CCACGTCAAATACTTCGATTCCT 58.818 43.478 0.00 0.00 0.00 3.36
2523 2587 6.740110 TCCAAATGTAAATGTTTAGCACGTT 58.260 32.000 0.00 0.00 36.02 3.99
2541 2605 3.002451 ACGTTAAGCAAACATGCACGTAA 59.998 39.130 13.69 2.92 41.07 3.18
2546 2610 4.970472 AGCAAACATGCACGTAATTTTG 57.030 36.364 3.41 0.00 37.25 2.44
2608 2674 1.951510 CAAGTCACATGTTGCCGCT 59.048 52.632 0.00 0.00 0.00 5.52
2625 2691 0.682209 GCTGAGTGCACCATCCCATT 60.682 55.000 14.63 0.00 42.31 3.16
2648 2714 3.659092 CCGGCGTGTGCATTGTGT 61.659 61.111 6.01 0.00 45.35 3.72
2698 2774 2.041265 ATCTCACGCCTTCCCCCT 59.959 61.111 0.00 0.00 0.00 4.79
2711 2787 0.917333 TCCCCCTAAAATCCCGCACT 60.917 55.000 0.00 0.00 0.00 4.40
2715 2791 2.701951 CCCCTAAAATCCCGCACTACTA 59.298 50.000 0.00 0.00 0.00 1.82
2797 2873 8.521170 TCTCTCATTCGATCTTCCTTAAGTTA 57.479 34.615 0.97 0.00 34.13 2.24
2822 2898 1.751351 CTACGTGCCTCCATCTTCTGA 59.249 52.381 0.00 0.00 0.00 3.27
2852 2928 1.410517 AGTCTACATGCCACCATCTCG 59.589 52.381 0.00 0.00 0.00 4.04
2853 2929 0.104855 TCTACATGCCACCATCTCGC 59.895 55.000 0.00 0.00 0.00 5.03
2854 2930 0.882042 CTACATGCCACCATCTCGCC 60.882 60.000 0.00 0.00 0.00 5.54
2855 2931 2.324014 TACATGCCACCATCTCGCCC 62.324 60.000 0.00 0.00 0.00 6.13
2856 2932 3.092511 ATGCCACCATCTCGCCCT 61.093 61.111 0.00 0.00 0.00 5.19
2857 2933 3.112205 ATGCCACCATCTCGCCCTC 62.112 63.158 0.00 0.00 0.00 4.30
2858 2934 3.474570 GCCACCATCTCGCCCTCT 61.475 66.667 0.00 0.00 0.00 3.69
2859 2935 3.036429 GCCACCATCTCGCCCTCTT 62.036 63.158 0.00 0.00 0.00 2.85
2860 2936 1.144936 CCACCATCTCGCCCTCTTC 59.855 63.158 0.00 0.00 0.00 2.87
2861 2937 1.333636 CCACCATCTCGCCCTCTTCT 61.334 60.000 0.00 0.00 0.00 2.85
2862 2938 0.103937 CACCATCTCGCCCTCTTCTC 59.896 60.000 0.00 0.00 0.00 2.87
2863 2939 0.032615 ACCATCTCGCCCTCTTCTCT 60.033 55.000 0.00 0.00 0.00 3.10
2864 2940 1.118838 CCATCTCGCCCTCTTCTCTT 58.881 55.000 0.00 0.00 0.00 2.85
2865 2941 1.202510 CCATCTCGCCCTCTTCTCTTG 60.203 57.143 0.00 0.00 0.00 3.02
2866 2942 1.753649 CATCTCGCCCTCTTCTCTTGA 59.246 52.381 0.00 0.00 0.00 3.02
2867 2943 2.151502 TCTCGCCCTCTTCTCTTGAT 57.848 50.000 0.00 0.00 0.00 2.57
2868 2944 2.461695 TCTCGCCCTCTTCTCTTGATT 58.538 47.619 0.00 0.00 0.00 2.57
2869 2945 2.428890 TCTCGCCCTCTTCTCTTGATTC 59.571 50.000 0.00 0.00 0.00 2.52
2870 2946 2.430332 CTCGCCCTCTTCTCTTGATTCT 59.570 50.000 0.00 0.00 0.00 2.40
2871 2947 2.428890 TCGCCCTCTTCTCTTGATTCTC 59.571 50.000 0.00 0.00 0.00 2.87
2872 2948 2.482839 CGCCCTCTTCTCTTGATTCTCC 60.483 54.545 0.00 0.00 0.00 3.71
2873 2949 2.771372 GCCCTCTTCTCTTGATTCTCCT 59.229 50.000 0.00 0.00 0.00 3.69
2874 2950 3.199727 GCCCTCTTCTCTTGATTCTCCTT 59.800 47.826 0.00 0.00 0.00 3.36
2875 2951 4.683129 GCCCTCTTCTCTTGATTCTCCTTC 60.683 50.000 0.00 0.00 0.00 3.46
2876 2952 4.716287 CCCTCTTCTCTTGATTCTCCTTCT 59.284 45.833 0.00 0.00 0.00 2.85
2877 2953 5.163416 CCCTCTTCTCTTGATTCTCCTTCTC 60.163 48.000 0.00 0.00 0.00 2.87
2878 2954 5.163416 CCTCTTCTCTTGATTCTCCTTCTCC 60.163 48.000 0.00 0.00 0.00 3.71
2879 2955 5.588845 TCTTCTCTTGATTCTCCTTCTCCT 58.411 41.667 0.00 0.00 0.00 3.69
2880 2956 6.022315 TCTTCTCTTGATTCTCCTTCTCCTT 58.978 40.000 0.00 0.00 0.00 3.36
2881 2957 5.930837 TCTCTTGATTCTCCTTCTCCTTC 57.069 43.478 0.00 0.00 0.00 3.46
2882 2958 5.588845 TCTCTTGATTCTCCTTCTCCTTCT 58.411 41.667 0.00 0.00 0.00 2.85
2883 2959 5.656416 TCTCTTGATTCTCCTTCTCCTTCTC 59.344 44.000 0.00 0.00 0.00 2.87
2884 2960 5.588845 TCTTGATTCTCCTTCTCCTTCTCT 58.411 41.667 0.00 0.00 0.00 3.10
2885 2961 6.736581 TCTTGATTCTCCTTCTCCTTCTCTA 58.263 40.000 0.00 0.00 0.00 2.43
2886 2962 6.833416 TCTTGATTCTCCTTCTCCTTCTCTAG 59.167 42.308 0.00 0.00 0.00 2.43
2887 2963 4.892934 TGATTCTCCTTCTCCTTCTCTAGC 59.107 45.833 0.00 0.00 0.00 3.42
2888 2964 4.601406 TTCTCCTTCTCCTTCTCTAGCT 57.399 45.455 0.00 0.00 0.00 3.32
2889 2965 4.601406 TCTCCTTCTCCTTCTCTAGCTT 57.399 45.455 0.00 0.00 0.00 3.74
2890 2966 4.941713 TCTCCTTCTCCTTCTCTAGCTTT 58.058 43.478 0.00 0.00 0.00 3.51
2891 2967 4.709397 TCTCCTTCTCCTTCTCTAGCTTTG 59.291 45.833 0.00 0.00 0.00 2.77
2892 2968 3.196685 TCCTTCTCCTTCTCTAGCTTTGC 59.803 47.826 0.00 0.00 0.00 3.68
2893 2969 3.197549 CCTTCTCCTTCTCTAGCTTTGCT 59.802 47.826 0.00 0.00 43.41 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.733501 AGCTTAGGTATAAGGTTGCCTATAAGA 59.266 37.037 0.00 0.00 45.23 2.10
1 2 7.908453 AGCTTAGGTATAAGGTTGCCTATAAG 58.092 38.462 0.00 0.00 45.23 1.73
2 3 7.867160 AGCTTAGGTATAAGGTTGCCTATAA 57.133 36.000 0.00 0.00 45.23 0.98
12 13 5.544562 AGGAGGCTTAAGCTTAGGTATAAGG 59.455 44.000 25.88 0.00 39.10 2.69
13 14 6.673839 AGGAGGCTTAAGCTTAGGTATAAG 57.326 41.667 25.88 8.48 41.25 1.73
14 15 7.280356 CAAAGGAGGCTTAAGCTTAGGTATAA 58.720 38.462 25.88 0.00 41.70 0.98
15 16 6.183361 CCAAAGGAGGCTTAAGCTTAGGTATA 60.183 42.308 25.88 0.00 41.70 1.47
16 17 5.398012 CCAAAGGAGGCTTAAGCTTAGGTAT 60.398 44.000 25.88 6.02 41.70 2.73
17 18 4.080526 CCAAAGGAGGCTTAAGCTTAGGTA 60.081 45.833 25.88 0.00 41.70 3.08
18 19 3.308473 CCAAAGGAGGCTTAAGCTTAGGT 60.308 47.826 25.88 7.46 41.70 3.08
19 20 3.282885 CCAAAGGAGGCTTAAGCTTAGG 58.717 50.000 25.88 11.09 41.70 2.69
20 21 3.956744 ACCAAAGGAGGCTTAAGCTTAG 58.043 45.455 25.88 8.59 41.70 2.18
21 22 4.382386 AACCAAAGGAGGCTTAAGCTTA 57.618 40.909 25.88 0.86 41.70 3.09
22 23 2.980246 ACCAAAGGAGGCTTAAGCTT 57.020 45.000 25.88 19.87 41.70 3.74
23 24 2.893489 CAAACCAAAGGAGGCTTAAGCT 59.107 45.455 25.88 12.70 41.70 3.74
24 25 2.029020 CCAAACCAAAGGAGGCTTAAGC 60.029 50.000 19.53 19.53 41.14 3.09
25 26 3.496331 TCCAAACCAAAGGAGGCTTAAG 58.504 45.455 0.00 0.00 0.00 1.85
26 27 3.496331 CTCCAAACCAAAGGAGGCTTAA 58.504 45.455 0.00 0.00 46.11 1.85
27 28 3.154827 CTCCAAACCAAAGGAGGCTTA 57.845 47.619 0.00 0.00 46.11 3.09
28 29 2.001076 CTCCAAACCAAAGGAGGCTT 57.999 50.000 0.00 0.00 46.11 4.35
29 30 3.753787 CTCCAAACCAAAGGAGGCT 57.246 52.632 0.00 0.00 46.11 4.58
33 34 4.551671 TGAAATTCCTCCAAACCAAAGGA 58.448 39.130 0.00 0.00 37.42 3.36
34 35 4.953940 TGAAATTCCTCCAAACCAAAGG 57.046 40.909 0.00 0.00 0.00 3.11
35 36 5.759763 CCTTTGAAATTCCTCCAAACCAAAG 59.240 40.000 0.00 0.00 39.03 2.77
36 37 5.426833 TCCTTTGAAATTCCTCCAAACCAAA 59.573 36.000 0.00 0.00 0.00 3.28
37 38 4.965532 TCCTTTGAAATTCCTCCAAACCAA 59.034 37.500 0.00 0.00 0.00 3.67
38 39 4.551671 TCCTTTGAAATTCCTCCAAACCA 58.448 39.130 0.00 0.00 0.00 3.67
39 40 5.745312 ATCCTTTGAAATTCCTCCAAACC 57.255 39.130 0.00 0.00 0.00 3.27
78 79 9.758651 GGCTTTAAAGGAAAAATTTCTACAAGA 57.241 29.630 16.78 0.00 37.35 3.02
79 80 8.988934 GGGCTTTAAAGGAAAAATTTCTACAAG 58.011 33.333 16.78 3.78 37.35 3.16
80 81 8.710239 AGGGCTTTAAAGGAAAAATTTCTACAA 58.290 29.630 16.78 0.00 37.35 2.41
81 82 8.257602 AGGGCTTTAAAGGAAAAATTTCTACA 57.742 30.769 16.78 0.00 37.35 2.74
82 83 9.555727 AAAGGGCTTTAAAGGAAAAATTTCTAC 57.444 29.630 16.78 0.00 37.35 2.59
83 84 9.554395 CAAAGGGCTTTAAAGGAAAAATTTCTA 57.446 29.630 16.78 0.00 37.35 2.10
84 85 7.502226 CCAAAGGGCTTTAAAGGAAAAATTTCT 59.498 33.333 16.78 0.00 37.35 2.52
85 86 7.284489 ACCAAAGGGCTTTAAAGGAAAAATTTC 59.716 33.333 16.78 0.00 37.90 2.17
86 87 7.122715 ACCAAAGGGCTTTAAAGGAAAAATTT 58.877 30.769 16.78 0.00 37.90 1.82
87 88 6.668645 ACCAAAGGGCTTTAAAGGAAAAATT 58.331 32.000 16.78 0.00 37.90 1.82
88 89 6.260700 ACCAAAGGGCTTTAAAGGAAAAAT 57.739 33.333 16.78 0.00 37.90 1.82
89 90 5.702065 ACCAAAGGGCTTTAAAGGAAAAA 57.298 34.783 16.78 0.00 37.90 1.94
90 91 5.189934 TGAACCAAAGGGCTTTAAAGGAAAA 59.810 36.000 16.78 0.00 37.90 2.29
91 92 4.717280 TGAACCAAAGGGCTTTAAAGGAAA 59.283 37.500 16.78 0.00 37.90 3.13
92 93 4.290942 TGAACCAAAGGGCTTTAAAGGAA 58.709 39.130 16.78 0.00 37.90 3.36
93 94 3.917300 TGAACCAAAGGGCTTTAAAGGA 58.083 40.909 16.78 0.00 37.90 3.36
94 95 4.890158 ATGAACCAAAGGGCTTTAAAGG 57.110 40.909 16.78 1.79 37.90 3.11
95 96 5.714806 TCCTATGAACCAAAGGGCTTTAAAG 59.285 40.000 11.02 11.02 37.90 1.85
96 97 5.646215 TCCTATGAACCAAAGGGCTTTAAA 58.354 37.500 0.00 0.00 37.90 1.52
97 98 5.263872 TCCTATGAACCAAAGGGCTTTAA 57.736 39.130 0.00 0.00 37.90 1.52
98 99 4.938575 TCCTATGAACCAAAGGGCTTTA 57.061 40.909 0.00 0.00 37.90 1.85
99 100 3.825908 TCCTATGAACCAAAGGGCTTT 57.174 42.857 0.00 0.00 37.90 3.51
100 101 3.825908 TTCCTATGAACCAAAGGGCTT 57.174 42.857 0.00 0.00 37.90 4.35
101 102 3.628257 CCATTCCTATGAACCAAAGGGCT 60.628 47.826 0.00 0.00 33.50 5.19
102 103 2.695147 CCATTCCTATGAACCAAAGGGC 59.305 50.000 0.00 0.00 33.50 5.19
103 104 4.249638 TCCATTCCTATGAACCAAAGGG 57.750 45.455 0.00 0.00 35.37 3.95
104 105 6.396829 GAATCCATTCCTATGAACCAAAGG 57.603 41.667 0.00 0.00 33.37 3.11
142 143 4.713792 ATGTGGAGGATAGGAACCAATC 57.286 45.455 0.00 0.00 34.11 2.67
143 144 5.472301 AAATGTGGAGGATAGGAACCAAT 57.528 39.130 0.00 0.00 34.11 3.16
144 145 4.946160 AAATGTGGAGGATAGGAACCAA 57.054 40.909 0.00 0.00 34.11 3.67
145 146 4.946160 AAAATGTGGAGGATAGGAACCA 57.054 40.909 0.00 0.00 0.00 3.67
146 147 6.321435 CCTTTAAAATGTGGAGGATAGGAACC 59.679 42.308 0.00 0.00 0.00 3.62
147 148 7.116736 TCCTTTAAAATGTGGAGGATAGGAAC 58.883 38.462 0.00 0.00 31.82 3.62
148 149 7.278724 TCCTTTAAAATGTGGAGGATAGGAA 57.721 36.000 0.00 0.00 31.82 3.36
149 150 6.901615 TCCTTTAAAATGTGGAGGATAGGA 57.098 37.500 0.00 0.00 31.82 2.94
150 151 7.954666 TTTCCTTTAAAATGTGGAGGATAGG 57.045 36.000 0.00 0.00 36.47 2.57
154 155 9.990360 GTTTATTTTCCTTTAAAATGTGGAGGA 57.010 29.630 6.07 0.00 45.35 3.71
155 156 9.771534 TGTTTATTTTCCTTTAAAATGTGGAGG 57.228 29.630 6.07 0.00 45.35 4.30
167 168 9.247861 AGTCTATGCTCATGTTTATTTTCCTTT 57.752 29.630 0.00 0.00 0.00 3.11
168 169 8.814038 AGTCTATGCTCATGTTTATTTTCCTT 57.186 30.769 0.00 0.00 0.00 3.36
169 170 8.049117 TGAGTCTATGCTCATGTTTATTTTCCT 58.951 33.333 0.00 0.00 40.23 3.36
170 171 8.213518 TGAGTCTATGCTCATGTTTATTTTCC 57.786 34.615 0.00 0.00 40.23 3.13
173 174 9.399797 TCATTGAGTCTATGCTCATGTTTATTT 57.600 29.630 9.42 0.00 43.99 1.40
174 175 8.969260 TCATTGAGTCTATGCTCATGTTTATT 57.031 30.769 9.42 0.00 43.99 1.40
175 176 8.969260 TTCATTGAGTCTATGCTCATGTTTAT 57.031 30.769 9.42 0.00 43.99 1.40
176 177 8.791327 TTTCATTGAGTCTATGCTCATGTTTA 57.209 30.769 9.42 0.00 43.99 2.01
177 178 7.692460 TTTCATTGAGTCTATGCTCATGTTT 57.308 32.000 9.42 0.00 43.99 2.83
178 179 7.692460 TTTTCATTGAGTCTATGCTCATGTT 57.308 32.000 9.42 0.00 43.99 2.71
179 180 7.692460 TTTTTCATTGAGTCTATGCTCATGT 57.308 32.000 9.42 0.00 43.99 3.21
200 201 9.439500 CATTTGGTTCACATCATAGGAATTTTT 57.561 29.630 0.00 0.00 0.00 1.94
201 202 8.814931 TCATTTGGTTCACATCATAGGAATTTT 58.185 29.630 0.00 0.00 0.00 1.82
202 203 8.253113 GTCATTTGGTTCACATCATAGGAATTT 58.747 33.333 0.00 0.00 0.00 1.82
203 204 7.396907 TGTCATTTGGTTCACATCATAGGAATT 59.603 33.333 0.00 0.00 0.00 2.17
204 205 6.891361 TGTCATTTGGTTCACATCATAGGAAT 59.109 34.615 0.00 0.00 0.00 3.01
205 206 6.244654 TGTCATTTGGTTCACATCATAGGAA 58.755 36.000 0.00 0.00 0.00 3.36
206 207 5.814481 TGTCATTTGGTTCACATCATAGGA 58.186 37.500 0.00 0.00 0.00 2.94
207 208 6.544931 AGATGTCATTTGGTTCACATCATAGG 59.455 38.462 12.21 0.00 45.13 2.57
208 209 7.498239 AGAGATGTCATTTGGTTCACATCATAG 59.502 37.037 12.21 0.00 45.13 2.23
209 210 7.341030 AGAGATGTCATTTGGTTCACATCATA 58.659 34.615 12.21 0.00 45.13 2.15
210 211 6.185511 AGAGATGTCATTTGGTTCACATCAT 58.814 36.000 12.21 0.00 45.13 2.45
211 212 5.563592 AGAGATGTCATTTGGTTCACATCA 58.436 37.500 12.21 0.00 45.13 3.07
212 213 6.506500 AAGAGATGTCATTTGGTTCACATC 57.493 37.500 3.21 3.21 43.70 3.06
213 214 6.906157 AAAGAGATGTCATTTGGTTCACAT 57.094 33.333 0.00 0.00 32.02 3.21
214 215 6.239008 GGAAAAGAGATGTCATTTGGTTCACA 60.239 38.462 0.00 0.00 0.00 3.58
215 216 6.015940 AGGAAAAGAGATGTCATTTGGTTCAC 60.016 38.462 0.00 0.00 0.00 3.18
216 217 6.070656 AGGAAAAGAGATGTCATTTGGTTCA 58.929 36.000 0.00 0.00 0.00 3.18
217 218 6.581171 AGGAAAAGAGATGTCATTTGGTTC 57.419 37.500 0.00 0.00 0.00 3.62
218 219 8.655935 ATTAGGAAAAGAGATGTCATTTGGTT 57.344 30.769 0.00 0.00 0.00 3.67
219 220 7.890127 TGATTAGGAAAAGAGATGTCATTTGGT 59.110 33.333 0.00 0.00 0.00 3.67
220 221 8.284945 TGATTAGGAAAAGAGATGTCATTTGG 57.715 34.615 0.00 0.00 0.00 3.28
224 225 9.995003 GAGTATGATTAGGAAAAGAGATGTCAT 57.005 33.333 0.00 0.00 0.00 3.06
225 226 8.981659 TGAGTATGATTAGGAAAAGAGATGTCA 58.018 33.333 0.00 0.00 0.00 3.58
226 227 9.995003 ATGAGTATGATTAGGAAAAGAGATGTC 57.005 33.333 0.00 0.00 0.00 3.06
230 231 9.883293 TCCTATGAGTATGATTAGGAAAAGAGA 57.117 33.333 0.00 0.00 37.79 3.10
264 265 9.911788 AAACTTGTAGGAAATGAGATGACATAT 57.088 29.630 0.00 0.00 0.00 1.78
265 266 9.383519 GAAACTTGTAGGAAATGAGATGACATA 57.616 33.333 0.00 0.00 0.00 2.29
266 267 7.337942 GGAAACTTGTAGGAAATGAGATGACAT 59.662 37.037 0.00 0.00 0.00 3.06
267 268 6.655003 GGAAACTTGTAGGAAATGAGATGACA 59.345 38.462 0.00 0.00 0.00 3.58
268 269 6.881602 AGGAAACTTGTAGGAAATGAGATGAC 59.118 38.462 0.00 0.00 37.44 3.06
269 270 7.020827 AGGAAACTTGTAGGAAATGAGATGA 57.979 36.000 0.00 0.00 37.44 2.92
270 271 8.970859 ATAGGAAACTTGTAGGAAATGAGATG 57.029 34.615 0.00 0.00 43.67 2.90
271 272 9.620259 GAATAGGAAACTTGTAGGAAATGAGAT 57.380 33.333 0.00 0.00 43.67 2.75
272 273 8.047310 GGAATAGGAAACTTGTAGGAAATGAGA 58.953 37.037 0.00 0.00 43.67 3.27
273 274 8.049721 AGGAATAGGAAACTTGTAGGAAATGAG 58.950 37.037 0.00 0.00 43.67 2.90
274 275 7.829211 CAGGAATAGGAAACTTGTAGGAAATGA 59.171 37.037 0.00 0.00 43.67 2.57
275 276 7.611855 ACAGGAATAGGAAACTTGTAGGAAATG 59.388 37.037 0.00 0.00 43.67 2.32
276 277 7.611855 CACAGGAATAGGAAACTTGTAGGAAAT 59.388 37.037 0.00 0.00 43.67 2.17
277 278 6.940298 CACAGGAATAGGAAACTTGTAGGAAA 59.060 38.462 0.00 0.00 43.67 3.13
278 279 6.271391 TCACAGGAATAGGAAACTTGTAGGAA 59.729 38.462 0.00 0.00 43.67 3.36
279 280 5.783360 TCACAGGAATAGGAAACTTGTAGGA 59.217 40.000 0.00 0.00 43.67 2.94
280 281 6.049955 TCACAGGAATAGGAAACTTGTAGG 57.950 41.667 0.00 0.00 43.67 3.18
281 282 9.838339 ATTATCACAGGAATAGGAAACTTGTAG 57.162 33.333 0.00 0.00 43.67 2.74
282 283 9.832445 GATTATCACAGGAATAGGAAACTTGTA 57.168 33.333 0.00 0.00 43.67 2.41
283 284 7.775561 GGATTATCACAGGAATAGGAAACTTGT 59.224 37.037 0.00 0.00 43.67 3.16
284 285 7.995488 AGGATTATCACAGGAATAGGAAACTTG 59.005 37.037 0.00 0.00 43.67 3.16
285 286 8.107196 AGGATTATCACAGGAATAGGAAACTT 57.893 34.615 0.00 0.00 43.67 2.66
287 288 9.660180 GATAGGATTATCACAGGAATAGGAAAC 57.340 37.037 0.00 0.00 36.49 2.78
288 289 9.392506 TGATAGGATTATCACAGGAATAGGAAA 57.607 33.333 0.00 0.00 40.50 3.13
289 290 8.972662 TGATAGGATTATCACAGGAATAGGAA 57.027 34.615 0.00 0.00 40.50 3.36
296 297 8.762645 GGTTCATATGATAGGATTATCACAGGA 58.237 37.037 6.17 0.00 46.23 3.86
297 298 8.542926 TGGTTCATATGATAGGATTATCACAGG 58.457 37.037 6.17 0.00 46.23 4.00
298 299 9.948964 TTGGTTCATATGATAGGATTATCACAG 57.051 33.333 6.17 0.00 46.23 3.66
305 306 8.854117 GCTTTCTTTGGTTCATATGATAGGATT 58.146 33.333 6.17 0.00 0.00 3.01
306 307 7.449704 GGCTTTCTTTGGTTCATATGATAGGAT 59.550 37.037 6.17 0.00 0.00 3.24
307 308 6.772716 GGCTTTCTTTGGTTCATATGATAGGA 59.227 38.462 6.17 0.00 0.00 2.94
308 309 6.774656 AGGCTTTCTTTGGTTCATATGATAGG 59.225 38.462 6.17 0.00 0.00 2.57
309 310 7.814264 AGGCTTTCTTTGGTTCATATGATAG 57.186 36.000 6.17 0.36 0.00 2.08
310 311 9.866655 ATAAGGCTTTCTTTGGTTCATATGATA 57.133 29.630 4.45 0.00 36.93 2.15
311 312 8.773033 ATAAGGCTTTCTTTGGTTCATATGAT 57.227 30.769 4.45 0.00 36.93 2.45
312 313 8.469200 CAATAAGGCTTTCTTTGGTTCATATGA 58.531 33.333 4.45 0.00 36.93 2.15
313 314 8.253113 ACAATAAGGCTTTCTTTGGTTCATATG 58.747 33.333 4.45 0.00 36.93 1.78
314 315 8.366359 ACAATAAGGCTTTCTTTGGTTCATAT 57.634 30.769 4.45 0.00 36.93 1.78
315 316 7.775053 ACAATAAGGCTTTCTTTGGTTCATA 57.225 32.000 4.45 0.00 36.93 2.15
316 317 6.670695 ACAATAAGGCTTTCTTTGGTTCAT 57.329 33.333 4.45 0.00 36.93 2.57
317 318 7.450014 TCATACAATAAGGCTTTCTTTGGTTCA 59.550 33.333 4.45 0.00 36.93 3.18
318 319 7.826690 TCATACAATAAGGCTTTCTTTGGTTC 58.173 34.615 4.45 0.00 36.93 3.62
319 320 7.451566 ACTCATACAATAAGGCTTTCTTTGGTT 59.548 33.333 4.45 0.00 36.93 3.67
320 321 6.948309 ACTCATACAATAAGGCTTTCTTTGGT 59.052 34.615 4.45 0.00 36.93 3.67
321 322 7.253422 CACTCATACAATAAGGCTTTCTTTGG 58.747 38.462 4.45 0.00 36.93 3.28
322 323 6.749118 GCACTCATACAATAAGGCTTTCTTTG 59.251 38.462 4.45 10.06 36.93 2.77
323 324 6.127619 GGCACTCATACAATAAGGCTTTCTTT 60.128 38.462 4.45 0.00 36.93 2.52
324 325 5.358160 GGCACTCATACAATAAGGCTTTCTT 59.642 40.000 4.45 0.00 39.40 2.52
325 326 4.884164 GGCACTCATACAATAAGGCTTTCT 59.116 41.667 4.45 0.00 0.00 2.52
326 327 4.884164 AGGCACTCATACAATAAGGCTTTC 59.116 41.667 4.45 0.00 0.00 2.62
327 328 4.860022 AGGCACTCATACAATAAGGCTTT 58.140 39.130 4.45 0.00 0.00 3.51
328 329 4.510167 AGGCACTCATACAATAAGGCTT 57.490 40.909 4.58 4.58 0.00 4.35
329 330 5.832539 ATAGGCACTCATACAATAAGGCT 57.167 39.130 0.00 0.00 41.75 4.58
330 331 7.118390 CACTTATAGGCACTCATACAATAAGGC 59.882 40.741 0.00 0.00 41.75 4.35
335 336 7.164122 CCATCACTTATAGGCACTCATACAAT 58.836 38.462 0.00 0.00 41.75 2.71
374 375 6.039047 CCAACTGATGGCTATATGATATTGCC 59.961 42.308 24.67 24.67 43.80 4.52
392 393 6.934645 GCATGGTTAATACTATAGCCAACTGA 59.065 38.462 0.00 0.00 39.25 3.41
405 406 6.578023 AGAGAGTTCAGAGCATGGTTAATAC 58.422 40.000 0.00 0.00 0.00 1.89
460 461 4.038883 CAGATCAGGAGCATCTATCACACA 59.961 45.833 0.00 0.00 33.73 3.72
466 467 3.585360 ACCACAGATCAGGAGCATCTAT 58.415 45.455 5.95 0.00 33.73 1.98
485 486 2.033299 CGGACATGGCAAATCACATACC 59.967 50.000 0.00 0.00 0.00 2.73
515 516 5.950023 ACTCCATCCAAATTAGCATCATCT 58.050 37.500 0.00 0.00 0.00 2.90
543 544 9.632807 TGGCAATTAAAATACATGTAAAGTGAC 57.367 29.630 15.85 14.11 0.00 3.67
562 563 8.424133 GGAGGAAGTTGATTAAATATGGCAATT 58.576 33.333 0.00 0.00 0.00 2.32
563 564 7.564660 TGGAGGAAGTTGATTAAATATGGCAAT 59.435 33.333 0.00 0.00 0.00 3.56
564 565 6.894654 TGGAGGAAGTTGATTAAATATGGCAA 59.105 34.615 0.00 0.00 0.00 4.52
565 566 6.430864 TGGAGGAAGTTGATTAAATATGGCA 58.569 36.000 0.00 0.00 0.00 4.92
566 567 6.959639 TGGAGGAAGTTGATTAAATATGGC 57.040 37.500 0.00 0.00 0.00 4.40
567 568 7.177392 GGGATGGAGGAAGTTGATTAAATATGG 59.823 40.741 0.00 0.00 0.00 2.74
568 569 7.725397 TGGGATGGAGGAAGTTGATTAAATATG 59.275 37.037 0.00 0.00 0.00 1.78
569 570 7.825709 TGGGATGGAGGAAGTTGATTAAATAT 58.174 34.615 0.00 0.00 0.00 1.28
570 571 7.219601 TGGGATGGAGGAAGTTGATTAAATA 57.780 36.000 0.00 0.00 0.00 1.40
571 572 6.091076 TGGGATGGAGGAAGTTGATTAAAT 57.909 37.500 0.00 0.00 0.00 1.40
572 573 5.528600 TGGGATGGAGGAAGTTGATTAAA 57.471 39.130 0.00 0.00 0.00 1.52
573 574 5.528600 TTGGGATGGAGGAAGTTGATTAA 57.471 39.130 0.00 0.00 0.00 1.40
574 575 5.528600 TTTGGGATGGAGGAAGTTGATTA 57.471 39.130 0.00 0.00 0.00 1.75
575 576 4.402616 TTTGGGATGGAGGAAGTTGATT 57.597 40.909 0.00 0.00 0.00 2.57
576 577 4.402616 TTTTGGGATGGAGGAAGTTGAT 57.597 40.909 0.00 0.00 0.00 2.57
577 578 3.893753 TTTTGGGATGGAGGAAGTTGA 57.106 42.857 0.00 0.00 0.00 3.18
578 579 6.211384 ACTTAATTTTGGGATGGAGGAAGTTG 59.789 38.462 0.00 0.00 0.00 3.16
579 580 6.211384 CACTTAATTTTGGGATGGAGGAAGTT 59.789 38.462 0.00 0.00 0.00 2.66
580 581 5.716703 CACTTAATTTTGGGATGGAGGAAGT 59.283 40.000 0.00 0.00 0.00 3.01
581 582 5.951747 TCACTTAATTTTGGGATGGAGGAAG 59.048 40.000 0.00 0.00 0.00 3.46
582 583 5.714806 GTCACTTAATTTTGGGATGGAGGAA 59.285 40.000 0.00 0.00 0.00 3.36
583 584 5.015178 AGTCACTTAATTTTGGGATGGAGGA 59.985 40.000 0.00 0.00 0.00 3.71
584 585 5.264395 AGTCACTTAATTTTGGGATGGAGG 58.736 41.667 0.00 0.00 0.00 4.30
585 586 5.945784 TGAGTCACTTAATTTTGGGATGGAG 59.054 40.000 0.00 0.00 0.00 3.86
586 587 5.886609 TGAGTCACTTAATTTTGGGATGGA 58.113 37.500 0.00 0.00 0.00 3.41
587 588 6.588719 TTGAGTCACTTAATTTTGGGATGG 57.411 37.500 0.00 0.00 0.00 3.51
588 589 9.492973 AAAATTGAGTCACTTAATTTTGGGATG 57.507 29.630 24.77 0.00 43.19 3.51
601 602 9.965902 ACAGAGGAAATATAAAATTGAGTCACT 57.034 29.630 0.00 0.00 0.00 3.41
650 651 8.277858 GAGCATTTAGGTCACCACTTTAGTGAT 61.278 40.741 11.35 0.00 45.45 3.06
651 652 7.018782 GAGCATTTAGGTCACCACTTTAGTGA 61.019 42.308 11.35 0.00 44.94 3.41
652 653 5.003804 AGCATTTAGGTCACCACTTTAGTG 58.996 41.667 0.00 2.86 45.23 2.74
653 654 5.242795 AGCATTTAGGTCACCACTTTAGT 57.757 39.130 0.00 0.00 0.00 2.24
654 655 5.803020 GAGCATTTAGGTCACCACTTTAG 57.197 43.478 0.00 0.00 44.14 1.85
664 665 7.680730 TCTCCCAATATAAGAGCATTTAGGTC 58.319 38.462 0.00 0.00 45.07 3.85
665 666 7.514127 TCTCTCCCAATATAAGAGCATTTAGGT 59.486 37.037 0.00 0.00 37.14 3.08
666 667 7.911651 TCTCTCCCAATATAAGAGCATTTAGG 58.088 38.462 0.00 0.00 37.14 2.69
667 668 8.592809 ACTCTCTCCCAATATAAGAGCATTTAG 58.407 37.037 0.00 0.00 37.56 1.85
668 669 8.497910 ACTCTCTCCCAATATAAGAGCATTTA 57.502 34.615 0.00 0.00 37.56 1.40
669 670 7.385894 ACTCTCTCCCAATATAAGAGCATTT 57.614 36.000 0.00 0.00 37.56 2.32
670 671 7.732593 AGTACTCTCTCCCAATATAAGAGCATT 59.267 37.037 0.00 0.00 37.56 3.56
671 672 7.245292 AGTACTCTCTCCCAATATAAGAGCAT 58.755 38.462 0.00 0.00 37.56 3.79
672 673 6.615617 AGTACTCTCTCCCAATATAAGAGCA 58.384 40.000 0.00 0.00 37.56 4.26
673 674 8.517056 GTTAGTACTCTCTCCCAATATAAGAGC 58.483 40.741 0.00 0.00 37.56 4.09
674 675 9.575868 TGTTAGTACTCTCTCCCAATATAAGAG 57.424 37.037 0.00 0.00 39.47 2.85
782 783 3.682858 TGCTTTGTAATTAGGCTGACGAC 59.317 43.478 0.00 0.00 0.00 4.34
1443 1475 3.135530 CCTCCTCCCTGTATTTCCTCTTG 59.864 52.174 0.00 0.00 0.00 3.02
1884 1928 0.034896 CCGTTGTAGCTCAGGTGGTT 59.965 55.000 0.00 0.00 0.00 3.67
1911 1955 1.069978 TCAGCCATGAGACGTGTCAAA 59.930 47.619 20.11 0.00 0.00 2.69
1912 1956 0.678950 TCAGCCATGAGACGTGTCAA 59.321 50.000 20.11 3.40 0.00 3.18
1913 1957 0.678950 TTCAGCCATGAGACGTGTCA 59.321 50.000 18.52 18.52 36.61 3.58
1942 1986 3.902881 TCTGGAGATGGAAGAAGAAGC 57.097 47.619 0.00 0.00 0.00 3.86
2052 2096 5.561679 AGTAGGCAAGAAGGAAACTAAAGG 58.438 41.667 0.00 0.00 42.68 3.11
2067 2111 1.927487 TGGTCGAAGGTAGTAGGCAA 58.073 50.000 0.00 0.00 0.00 4.52
2204 2250 3.259374 TCACAACAGAGATCAAGGACCTC 59.741 47.826 0.00 0.00 0.00 3.85
2216 2262 4.001652 AGACATGCTCATTCACAACAGAG 58.998 43.478 0.00 0.00 0.00 3.35
2222 2268 4.823442 AGAAAACAGACATGCTCATTCACA 59.177 37.500 0.00 0.00 0.00 3.58
2326 2373 6.661377 AGAGTTGCTCTAAGAGACACTATTGA 59.339 38.462 0.00 0.00 39.28 2.57
2327 2374 6.862209 AGAGTTGCTCTAAGAGACACTATTG 58.138 40.000 0.00 0.00 39.28 1.90
2353 2400 2.171448 GGCACATAAGATGGGACTCTGT 59.829 50.000 0.00 0.00 39.16 3.41
2387 2441 2.613691 CAAATGCAAATGGAGCACCTC 58.386 47.619 0.71 0.00 45.95 3.85
2436 2491 4.494484 TGAAGGTGAATACATGACGACTG 58.506 43.478 0.00 0.00 0.00 3.51
2467 2522 7.334921 TCGAAGTATTTGACGTGGGAAAAATAT 59.665 33.333 0.00 0.00 32.38 1.28
2475 2539 3.308866 GGAATCGAAGTATTTGACGTGGG 59.691 47.826 0.00 0.00 42.26 4.61
2486 2550 8.673711 CATTTACATTTGGAAGGAATCGAAGTA 58.326 33.333 0.00 0.00 0.00 2.24
2491 2555 9.289303 CTAAACATTTACATTTGGAAGGAATCG 57.711 33.333 0.00 0.00 0.00 3.34
2498 2562 6.740110 ACGTGCTAAACATTTACATTTGGAA 58.260 32.000 0.00 0.00 0.00 3.53
2541 2605 5.021033 TGTTCATGCAACTTGTCCAAAAT 57.979 34.783 0.00 0.00 35.79 1.82
2546 2610 4.629200 TGTTTTTGTTCATGCAACTTGTCC 59.371 37.500 0.00 0.00 35.79 4.02
2608 2674 0.994247 AGAATGGGATGGTGCACTCA 59.006 50.000 17.98 13.43 0.00 3.41
2625 2691 2.449031 AATGCACACGCCGGAGAAGA 62.449 55.000 13.83 0.00 37.32 2.87
2648 2714 0.530744 CCACGAACCTCGAAGGATGA 59.469 55.000 2.59 0.00 43.74 2.92
2678 2754 2.268920 GGGAAGGCGTGAGATGCA 59.731 61.111 0.00 0.00 0.00 3.96
2679 2755 2.514824 GGGGAAGGCGTGAGATGC 60.515 66.667 0.00 0.00 0.00 3.91
2698 2774 5.991861 TGGATTTAGTAGTGCGGGATTTTA 58.008 37.500 0.00 0.00 0.00 1.52
2711 2787 4.764050 TCCGAGCCAAATGGATTTAGTA 57.236 40.909 2.98 0.00 37.39 1.82
2715 2791 2.310538 GGATCCGAGCCAAATGGATTT 58.689 47.619 2.98 0.00 42.46 2.17
2822 2898 3.202818 TGGCATGTAGACTCCCAAATCAT 59.797 43.478 0.00 0.00 0.00 2.45
2829 2905 0.839946 ATGGTGGCATGTAGACTCCC 59.160 55.000 0.00 0.00 38.17 4.30
2834 2910 0.104855 GCGAGATGGTGGCATGTAGA 59.895 55.000 0.00 0.00 0.00 2.59
2852 2928 2.771372 AGGAGAATCAAGAGAAGAGGGC 59.229 50.000 0.00 0.00 36.25 5.19
2853 2929 4.716287 AGAAGGAGAATCAAGAGAAGAGGG 59.284 45.833 0.00 0.00 36.25 4.30
2854 2930 5.163416 GGAGAAGGAGAATCAAGAGAAGAGG 60.163 48.000 0.00 0.00 36.25 3.69
2855 2931 5.658190 AGGAGAAGGAGAATCAAGAGAAGAG 59.342 44.000 0.00 0.00 36.25 2.85
2856 2932 5.588845 AGGAGAAGGAGAATCAAGAGAAGA 58.411 41.667 0.00 0.00 36.25 2.87
2857 2933 5.937975 AGGAGAAGGAGAATCAAGAGAAG 57.062 43.478 0.00 0.00 36.25 2.85
2858 2934 6.022315 AGAAGGAGAAGGAGAATCAAGAGAA 58.978 40.000 0.00 0.00 36.25 2.87
2859 2935 5.588845 AGAAGGAGAAGGAGAATCAAGAGA 58.411 41.667 0.00 0.00 36.25 3.10
2860 2936 5.658190 AGAGAAGGAGAAGGAGAATCAAGAG 59.342 44.000 0.00 0.00 36.25 2.85
2861 2937 5.588845 AGAGAAGGAGAAGGAGAATCAAGA 58.411 41.667 0.00 0.00 36.25 3.02
2862 2938 5.937975 AGAGAAGGAGAAGGAGAATCAAG 57.062 43.478 0.00 0.00 36.25 3.02
2863 2939 5.362430 GCTAGAGAAGGAGAAGGAGAATCAA 59.638 44.000 0.00 0.00 36.25 2.57
2864 2940 4.892934 GCTAGAGAAGGAGAAGGAGAATCA 59.107 45.833 0.00 0.00 36.25 2.57
2865 2941 5.140454 AGCTAGAGAAGGAGAAGGAGAATC 58.860 45.833 0.00 0.00 0.00 2.52
2866 2942 5.142806 AGCTAGAGAAGGAGAAGGAGAAT 57.857 43.478 0.00 0.00 0.00 2.40
2867 2943 4.601406 AGCTAGAGAAGGAGAAGGAGAA 57.399 45.455 0.00 0.00 0.00 2.87
2868 2944 4.601406 AAGCTAGAGAAGGAGAAGGAGA 57.399 45.455 0.00 0.00 0.00 3.71
2869 2945 4.680440 GCAAAGCTAGAGAAGGAGAAGGAG 60.680 50.000 0.00 0.00 0.00 3.69
2870 2946 3.196685 GCAAAGCTAGAGAAGGAGAAGGA 59.803 47.826 0.00 0.00 0.00 3.36
2871 2947 3.197549 AGCAAAGCTAGAGAAGGAGAAGG 59.802 47.826 0.00 0.00 36.99 3.46
2872 2948 4.470334 AGCAAAGCTAGAGAAGGAGAAG 57.530 45.455 0.00 0.00 36.99 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.