Multiple sequence alignment - TraesCS1D01G238000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G238000 chr1D 100.000 2240 0 0 1 2240 327013269 327015508 0.000000e+00 4137
1 TraesCS1D01G238000 chr1D 94.883 469 23 1 1773 2240 379372293 379372761 0.000000e+00 732
2 TraesCS1D01G238000 chr4B 94.774 1129 55 3 624 1752 11609804 11610928 0.000000e+00 1755
3 TraesCS1D01G238000 chr4B 93.684 570 31 5 39 604 11609169 11609737 0.000000e+00 848
4 TraesCS1D01G238000 chr1A 94.652 1122 52 3 634 1754 382100920 382102034 0.000000e+00 1733
5 TraesCS1D01G238000 chr1A 91.312 564 45 4 39 599 382100248 382100810 0.000000e+00 767
6 TraesCS1D01G238000 chr1A 90.000 580 53 5 26 601 462343835 462344413 0.000000e+00 745
7 TraesCS1D01G238000 chr5B 94.155 1112 46 9 608 1717 524503100 524504194 0.000000e+00 1676
8 TraesCS1D01G238000 chr5B 91.837 588 39 9 23 604 524502359 524502943 0.000000e+00 811
9 TraesCS1D01G238000 chr7B 91.386 1068 86 6 615 1680 88977561 88976498 0.000000e+00 1458
10 TraesCS1D01G238000 chr4D 87.136 1166 124 12 608 1752 79009890 79011050 0.000000e+00 1299
11 TraesCS1D01G238000 chr4D 92.784 582 38 4 26 604 349959007 349959587 0.000000e+00 839
12 TraesCS1D01G238000 chr4D 96.368 468 16 1 1773 2239 343295213 343295680 0.000000e+00 769
13 TraesCS1D01G238000 chr4D 95.522 469 18 2 1773 2240 137637823 137637357 0.000000e+00 747
14 TraesCS1D01G238000 chr4D 89.965 578 52 5 28 601 79009154 79009729 0.000000e+00 741
15 TraesCS1D01G238000 chr6B 95.545 808 33 3 634 1439 673017017 673017823 0.000000e+00 1290
16 TraesCS1D01G238000 chr6B 91.985 549 40 4 53 599 673016361 673016907 0.000000e+00 767
17 TraesCS1D01G238000 chr3D 86.655 1169 126 15 606 1752 384009450 384010610 0.000000e+00 1267
18 TraesCS1D01G238000 chr3D 95.957 470 17 2 1773 2240 555545199 555544730 0.000000e+00 761
19 TraesCS1D01G238000 chr3D 99.017 407 4 0 1346 1752 91381611 91381205 0.000000e+00 730
20 TraesCS1D01G238000 chr3D 94.670 469 24 1 1773 2240 286469945 286469477 0.000000e+00 726
21 TraesCS1D01G238000 chr4A 92.518 842 55 6 911 1750 340510974 340511809 0.000000e+00 1199
22 TraesCS1D01G238000 chr4A 88.161 397 28 8 1357 1752 664887898 664887520 2.620000e-124 455
23 TraesCS1D01G238000 chr6D 94.199 724 33 3 1028 1750 143474196 143474911 0.000000e+00 1096
24 TraesCS1D01G238000 chr6D 93.103 522 33 3 82 601 208550450 208549930 0.000000e+00 761
25 TraesCS1D01G238000 chr6D 91.421 373 29 3 1382 1752 437344745 437344374 1.980000e-140 508
26 TraesCS1D01G238000 chr5A 88.268 895 93 9 608 1500 354275309 354276193 0.000000e+00 1061
27 TraesCS1D01G238000 chr5A 89.138 580 55 7 26 601 354274573 354275148 0.000000e+00 715
28 TraesCS1D01G238000 chr5D 96.802 469 14 1 1773 2240 175337512 175337980 0.000000e+00 782
29 TraesCS1D01G238000 chr5D 95.736 469 19 1 1773 2240 137150457 137150925 0.000000e+00 754
30 TraesCS1D01G238000 chr5D 95.745 376 16 0 1375 1750 47010385 47010760 6.840000e-170 606
31 TraesCS1D01G238000 chr7D 96.162 469 17 1 1773 2240 200429276 200429744 0.000000e+00 765
32 TraesCS1D01G238000 chr2D 95.522 469 20 1 1773 2240 26013950 26014418 0.000000e+00 749
33 TraesCS1D01G238000 chr6A 92.350 366 23 5 1382 1744 585576896 585576533 1.190000e-142 516


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G238000 chr1D 327013269 327015508 2239 False 4137.0 4137 100.0000 1 2240 1 chr1D.!!$F1 2239
1 TraesCS1D01G238000 chr4B 11609169 11610928 1759 False 1301.5 1755 94.2290 39 1752 2 chr4B.!!$F1 1713
2 TraesCS1D01G238000 chr1A 382100248 382102034 1786 False 1250.0 1733 92.9820 39 1754 2 chr1A.!!$F2 1715
3 TraesCS1D01G238000 chr1A 462343835 462344413 578 False 745.0 745 90.0000 26 601 1 chr1A.!!$F1 575
4 TraesCS1D01G238000 chr5B 524502359 524504194 1835 False 1243.5 1676 92.9960 23 1717 2 chr5B.!!$F1 1694
5 TraesCS1D01G238000 chr7B 88976498 88977561 1063 True 1458.0 1458 91.3860 615 1680 1 chr7B.!!$R1 1065
6 TraesCS1D01G238000 chr4D 79009154 79011050 1896 False 1020.0 1299 88.5505 28 1752 2 chr4D.!!$F3 1724
7 TraesCS1D01G238000 chr4D 349959007 349959587 580 False 839.0 839 92.7840 26 604 1 chr4D.!!$F2 578
8 TraesCS1D01G238000 chr6B 673016361 673017823 1462 False 1028.5 1290 93.7650 53 1439 2 chr6B.!!$F1 1386
9 TraesCS1D01G238000 chr3D 384009450 384010610 1160 False 1267.0 1267 86.6550 606 1752 1 chr3D.!!$F1 1146
10 TraesCS1D01G238000 chr4A 340510974 340511809 835 False 1199.0 1199 92.5180 911 1750 1 chr4A.!!$F1 839
11 TraesCS1D01G238000 chr6D 143474196 143474911 715 False 1096.0 1096 94.1990 1028 1750 1 chr6D.!!$F1 722
12 TraesCS1D01G238000 chr6D 208549930 208550450 520 True 761.0 761 93.1030 82 601 1 chr6D.!!$R1 519
13 TraesCS1D01G238000 chr5A 354274573 354276193 1620 False 888.0 1061 88.7030 26 1500 2 chr5A.!!$F1 1474

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
495 603 0.539986 GGCGGAATAGGTGGACAAGA 59.46 55.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2032 2320 0.037326 TCCCTACGTTCAGCAGCAAG 60.037 55.0 0.0 0.0 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.177119 ACAATTTATGTGTCACTTGGTATTGT 57.823 30.769 4.27 11.52 41.93 2.71
30 31 6.567687 TTATGTGTCACTTGGTATTGTTGG 57.432 37.500 4.27 0.00 0.00 3.77
36 37 7.120579 TGTGTCACTTGGTATTGTTGGAATATC 59.879 37.037 4.27 0.00 0.00 1.63
37 38 7.120579 GTGTCACTTGGTATTGTTGGAATATCA 59.879 37.037 0.00 0.00 0.00 2.15
134 137 4.222588 TGGAATTCATTTTTAGGTGCTGGG 59.777 41.667 7.93 0.00 0.00 4.45
144 147 1.620822 AGGTGCTGGGATGTGTTTTC 58.379 50.000 0.00 0.00 0.00 2.29
149 171 2.290896 TGCTGGGATGTGTTTTCTAGGG 60.291 50.000 0.00 0.00 0.00 3.53
390 498 3.822735 CTGACAAAGGATTCAAAGAGGCA 59.177 43.478 0.00 0.00 0.00 4.75
438 546 8.367911 TCTATATCTGCTTTCGTTGGTTATGAT 58.632 33.333 0.00 0.00 0.00 2.45
495 603 0.539986 GGCGGAATAGGTGGACAAGA 59.460 55.000 0.00 0.00 0.00 3.02
601 709 1.280133 ACACTCAGGTATGCATGCACT 59.720 47.619 25.37 13.41 0.00 4.40
604 712 2.751259 ACTCAGGTATGCATGCACTTTG 59.249 45.455 25.37 18.24 0.00 2.77
606 714 3.419943 TCAGGTATGCATGCACTTTGAA 58.580 40.909 25.37 4.94 0.00 2.69
607 715 3.825585 TCAGGTATGCATGCACTTTGAAA 59.174 39.130 25.37 3.27 0.00 2.69
608 716 4.463539 TCAGGTATGCATGCACTTTGAAAT 59.536 37.500 25.37 7.00 0.00 2.17
609 717 4.565166 CAGGTATGCATGCACTTTGAAATG 59.435 41.667 25.37 10.03 0.00 2.32
610 718 4.463539 AGGTATGCATGCACTTTGAAATGA 59.536 37.500 25.37 0.00 0.00 2.57
611 719 5.047164 AGGTATGCATGCACTTTGAAATGAA 60.047 36.000 25.37 0.00 0.00 2.57
612 720 5.813672 GGTATGCATGCACTTTGAAATGAAT 59.186 36.000 25.37 4.52 0.00 2.57
613 721 6.979817 GGTATGCATGCACTTTGAAATGAATA 59.020 34.615 25.37 3.40 0.00 1.75
782 1042 1.619827 CGGGAATTATGCAATGGCCAT 59.380 47.619 14.09 14.09 40.13 4.40
807 1067 0.618458 TGCCACTGGGAACACCTATC 59.382 55.000 0.00 0.00 41.11 2.08
808 1068 0.912486 GCCACTGGGAACACCTATCT 59.088 55.000 0.00 0.00 41.11 1.98
851 1111 0.632835 AATGTCATGGAGGGGCATGT 59.367 50.000 0.00 0.00 0.00 3.21
988 1248 2.894731 TGACTGAGGAGGACACAATCT 58.105 47.619 0.00 0.00 0.00 2.40
1283 1544 5.716228 TGTCGAGACTACCCCTTTTGTAATA 59.284 40.000 4.78 0.00 0.00 0.98
1287 1548 6.534079 CGAGACTACCCCTTTTGTAATAACTG 59.466 42.308 0.00 0.00 0.00 3.16
1402 1665 3.947868 AGTGATGCACTGCTACAATTCT 58.052 40.909 1.98 0.00 43.63 2.40
1514 1780 9.508567 GCTTGAATTGTTTTAGTTATCTCATCC 57.491 33.333 0.00 0.00 0.00 3.51
1531 1815 7.333528 TCTCATCCAACATAAGGCAAAATAC 57.666 36.000 0.00 0.00 0.00 1.89
1534 1818 6.889177 TCATCCAACATAAGGCAAAATACTCA 59.111 34.615 0.00 0.00 0.00 3.41
1754 2042 3.117813 AGCTACCAAACACACCCTTACAA 60.118 43.478 0.00 0.00 0.00 2.41
1755 2043 3.824443 GCTACCAAACACACCCTTACAAT 59.176 43.478 0.00 0.00 0.00 2.71
1756 2044 4.082949 GCTACCAAACACACCCTTACAATC 60.083 45.833 0.00 0.00 0.00 2.67
1757 2045 4.178956 ACCAAACACACCCTTACAATCT 57.821 40.909 0.00 0.00 0.00 2.40
1758 2046 4.542697 ACCAAACACACCCTTACAATCTT 58.457 39.130 0.00 0.00 0.00 2.40
1759 2047 4.959839 ACCAAACACACCCTTACAATCTTT 59.040 37.500 0.00 0.00 0.00 2.52
1760 2048 6.130569 ACCAAACACACCCTTACAATCTTTA 58.869 36.000 0.00 0.00 0.00 1.85
1761 2049 6.264518 ACCAAACACACCCTTACAATCTTTAG 59.735 38.462 0.00 0.00 0.00 1.85
1762 2050 6.488683 CCAAACACACCCTTACAATCTTTAGA 59.511 38.462 0.00 0.00 0.00 2.10
1763 2051 7.176690 CCAAACACACCCTTACAATCTTTAGAT 59.823 37.037 0.00 0.00 36.07 1.98
1764 2052 7.923414 AACACACCCTTACAATCTTTAGATC 57.077 36.000 0.00 0.00 32.75 2.75
1765 2053 7.016153 ACACACCCTTACAATCTTTAGATCA 57.984 36.000 0.00 0.00 32.75 2.92
1766 2054 7.633789 ACACACCCTTACAATCTTTAGATCAT 58.366 34.615 0.00 0.00 32.75 2.45
1767 2055 7.554118 ACACACCCTTACAATCTTTAGATCATG 59.446 37.037 0.00 0.00 32.75 3.07
1768 2056 7.554118 CACACCCTTACAATCTTTAGATCATGT 59.446 37.037 0.00 3.38 32.75 3.21
1769 2057 8.109634 ACACCCTTACAATCTTTAGATCATGTT 58.890 33.333 0.00 0.00 32.75 2.71
1770 2058 8.400947 CACCCTTACAATCTTTAGATCATGTTG 58.599 37.037 0.00 0.00 32.75 3.33
1771 2059 8.109634 ACCCTTACAATCTTTAGATCATGTTGT 58.890 33.333 0.00 2.80 32.75 3.32
1772 2060 8.960591 CCCTTACAATCTTTAGATCATGTTGTT 58.039 33.333 0.00 0.00 32.75 2.83
1784 2072 9.793259 TTAGATCATGTTGTTTAGAAAGAAGGT 57.207 29.630 0.00 0.00 0.00 3.50
1785 2073 8.697507 AGATCATGTTGTTTAGAAAGAAGGTT 57.302 30.769 0.00 0.00 0.00 3.50
1786 2074 8.787852 AGATCATGTTGTTTAGAAAGAAGGTTC 58.212 33.333 0.00 0.00 0.00 3.62
1787 2075 7.272037 TCATGTTGTTTAGAAAGAAGGTTCC 57.728 36.000 0.00 0.00 0.00 3.62
1788 2076 7.060421 TCATGTTGTTTAGAAAGAAGGTTCCT 58.940 34.615 0.00 0.00 0.00 3.36
1789 2077 8.215050 TCATGTTGTTTAGAAAGAAGGTTCCTA 58.785 33.333 0.00 0.00 0.00 2.94
1790 2078 9.014297 CATGTTGTTTAGAAAGAAGGTTCCTAT 57.986 33.333 0.00 0.00 0.00 2.57
1791 2079 8.617290 TGTTGTTTAGAAAGAAGGTTCCTATC 57.383 34.615 0.00 0.00 0.00 2.08
1792 2080 7.386848 TGTTGTTTAGAAAGAAGGTTCCTATCG 59.613 37.037 0.00 0.00 0.00 2.92
1793 2081 7.235935 TGTTTAGAAAGAAGGTTCCTATCGA 57.764 36.000 0.00 0.00 0.00 3.59
1794 2082 7.848128 TGTTTAGAAAGAAGGTTCCTATCGAT 58.152 34.615 2.16 2.16 0.00 3.59
1795 2083 7.764443 TGTTTAGAAAGAAGGTTCCTATCGATG 59.236 37.037 8.54 0.00 0.00 3.84
1796 2084 5.941555 AGAAAGAAGGTTCCTATCGATGT 57.058 39.130 8.54 0.00 0.00 3.06
1797 2085 6.301169 AGAAAGAAGGTTCCTATCGATGTT 57.699 37.500 8.54 0.00 0.00 2.71
1798 2086 6.342111 AGAAAGAAGGTTCCTATCGATGTTC 58.658 40.000 8.54 0.13 0.00 3.18
1799 2087 5.941555 AAGAAGGTTCCTATCGATGTTCT 57.058 39.130 8.54 2.35 0.00 3.01
1800 2088 7.342284 AGAAAGAAGGTTCCTATCGATGTTCTA 59.658 37.037 8.54 0.00 0.00 2.10
1801 2089 6.642707 AGAAGGTTCCTATCGATGTTCTAG 57.357 41.667 8.54 0.00 0.00 2.43
1802 2090 6.130569 AGAAGGTTCCTATCGATGTTCTAGT 58.869 40.000 8.54 0.00 0.00 2.57
1803 2091 6.263617 AGAAGGTTCCTATCGATGTTCTAGTC 59.736 42.308 8.54 0.00 0.00 2.59
1804 2092 5.446860 AGGTTCCTATCGATGTTCTAGTCA 58.553 41.667 8.54 0.00 0.00 3.41
1805 2093 5.892119 AGGTTCCTATCGATGTTCTAGTCAA 59.108 40.000 8.54 0.00 0.00 3.18
1806 2094 6.551601 AGGTTCCTATCGATGTTCTAGTCAAT 59.448 38.462 8.54 0.00 0.00 2.57
1807 2095 7.724506 AGGTTCCTATCGATGTTCTAGTCAATA 59.275 37.037 8.54 0.00 0.00 1.90
1808 2096 8.358148 GGTTCCTATCGATGTTCTAGTCAATAA 58.642 37.037 8.54 0.00 0.00 1.40
1809 2097 9.745880 GTTCCTATCGATGTTCTAGTCAATAAA 57.254 33.333 8.54 0.00 0.00 1.40
1810 2098 9.967346 TTCCTATCGATGTTCTAGTCAATAAAG 57.033 33.333 8.54 0.00 0.00 1.85
1811 2099 9.132923 TCCTATCGATGTTCTAGTCAATAAAGT 57.867 33.333 8.54 0.00 0.00 2.66
1812 2100 9.751542 CCTATCGATGTTCTAGTCAATAAAGTT 57.248 33.333 8.54 0.00 0.00 2.66
1815 2103 9.877178 ATCGATGTTCTAGTCAATAAAGTTTCT 57.123 29.630 0.00 0.00 0.00 2.52
1816 2104 9.140286 TCGATGTTCTAGTCAATAAAGTTTCTG 57.860 33.333 0.00 0.00 0.00 3.02
1817 2105 9.140286 CGATGTTCTAGTCAATAAAGTTTCTGA 57.860 33.333 0.00 0.00 0.00 3.27
1819 2107 8.311650 TGTTCTAGTCAATAAAGTTTCTGAGC 57.688 34.615 0.00 0.00 0.00 4.26
1820 2108 8.150945 TGTTCTAGTCAATAAAGTTTCTGAGCT 58.849 33.333 0.00 0.00 0.00 4.09
1821 2109 8.994170 GTTCTAGTCAATAAAGTTTCTGAGCTT 58.006 33.333 0.00 0.00 0.00 3.74
1825 2113 8.910351 AGTCAATAAAGTTTCTGAGCTTAAGT 57.090 30.769 4.02 0.00 0.00 2.24
1826 2114 9.998106 AGTCAATAAAGTTTCTGAGCTTAAGTA 57.002 29.630 4.02 0.00 0.00 2.24
1850 2138 9.498307 GTATAATTTTACCATTCAGAACAACGG 57.502 33.333 0.00 0.00 0.00 4.44
1851 2139 4.839668 TTTTACCATTCAGAACAACGGG 57.160 40.909 0.00 0.00 0.00 5.28
1852 2140 1.816074 TACCATTCAGAACAACGGGC 58.184 50.000 0.00 0.00 0.00 6.13
1853 2141 0.110486 ACCATTCAGAACAACGGGCT 59.890 50.000 0.00 0.00 0.00 5.19
1854 2142 1.349688 ACCATTCAGAACAACGGGCTA 59.650 47.619 0.00 0.00 0.00 3.93
1855 2143 2.009774 CCATTCAGAACAACGGGCTAG 58.990 52.381 0.00 0.00 0.00 3.42
1856 2144 2.009774 CATTCAGAACAACGGGCTAGG 58.990 52.381 0.00 0.00 0.00 3.02
1857 2145 0.321298 TTCAGAACAACGGGCTAGGC 60.321 55.000 8.00 8.00 0.00 3.93
1858 2146 1.192146 TCAGAACAACGGGCTAGGCT 61.192 55.000 16.80 0.00 0.00 4.58
1859 2147 0.321653 CAGAACAACGGGCTAGGCTT 60.322 55.000 16.80 1.49 0.00 4.35
1860 2148 0.400594 AGAACAACGGGCTAGGCTTT 59.599 50.000 16.80 7.05 0.00 3.51
1861 2149 1.202891 AGAACAACGGGCTAGGCTTTT 60.203 47.619 16.80 6.68 0.00 2.27
1862 2150 1.199327 GAACAACGGGCTAGGCTTTTC 59.801 52.381 16.80 7.94 0.00 2.29
1863 2151 0.400594 ACAACGGGCTAGGCTTTTCT 59.599 50.000 16.80 0.00 0.00 2.52
1864 2152 1.202891 ACAACGGGCTAGGCTTTTCTT 60.203 47.619 16.80 0.00 0.00 2.52
1865 2153 1.886542 CAACGGGCTAGGCTTTTCTTT 59.113 47.619 16.80 0.00 0.00 2.52
1866 2154 2.287977 ACGGGCTAGGCTTTTCTTTT 57.712 45.000 16.80 0.00 0.00 2.27
1867 2155 1.886542 ACGGGCTAGGCTTTTCTTTTG 59.113 47.619 16.80 0.00 0.00 2.44
1868 2156 2.159382 CGGGCTAGGCTTTTCTTTTGA 58.841 47.619 16.80 0.00 0.00 2.69
1869 2157 2.556622 CGGGCTAGGCTTTTCTTTTGAA 59.443 45.455 16.80 0.00 36.52 2.69
1870 2158 3.611766 CGGGCTAGGCTTTTCTTTTGAAC 60.612 47.826 16.80 0.00 38.30 3.18
1871 2159 3.320826 GGGCTAGGCTTTTCTTTTGAACA 59.679 43.478 16.80 0.00 38.30 3.18
1872 2160 4.202212 GGGCTAGGCTTTTCTTTTGAACAA 60.202 41.667 16.80 0.00 38.30 2.83
1873 2161 5.356426 GGCTAGGCTTTTCTTTTGAACAAA 58.644 37.500 9.46 0.00 38.30 2.83
1874 2162 5.463392 GGCTAGGCTTTTCTTTTGAACAAAG 59.537 40.000 9.46 0.00 38.30 2.77
1875 2163 6.042777 GCTAGGCTTTTCTTTTGAACAAAGT 58.957 36.000 0.00 0.00 38.30 2.66
1876 2164 6.199154 GCTAGGCTTTTCTTTTGAACAAAGTC 59.801 38.462 0.00 0.00 38.30 3.01
1877 2165 6.286240 AGGCTTTTCTTTTGAACAAAGTCT 57.714 33.333 0.46 0.00 36.77 3.24
1878 2166 6.333416 AGGCTTTTCTTTTGAACAAAGTCTC 58.667 36.000 0.46 0.00 36.87 3.36
1879 2167 6.071391 AGGCTTTTCTTTTGAACAAAGTCTCA 60.071 34.615 0.46 0.00 36.87 3.27
1880 2168 6.758416 GGCTTTTCTTTTGAACAAAGTCTCAT 59.242 34.615 0.46 0.00 38.30 2.90
1881 2169 7.254218 GGCTTTTCTTTTGAACAAAGTCTCATG 60.254 37.037 0.46 0.00 38.30 3.07
1882 2170 7.489113 GCTTTTCTTTTGAACAAAGTCTCATGA 59.511 33.333 0.00 0.00 38.30 3.07
1883 2171 8.687824 TTTTCTTTTGAACAAAGTCTCATGAC 57.312 30.769 0.00 0.00 39.63 3.06
1884 2172 7.630242 TTCTTTTGAACAAAGTCTCATGACT 57.370 32.000 0.00 0.00 43.28 3.41
1934 2222 8.849168 TGATGAATTAGTTGTGCAATATAAGGG 58.151 33.333 0.00 0.00 0.00 3.95
1935 2223 7.581213 TGAATTAGTTGTGCAATATAAGGGG 57.419 36.000 0.00 0.00 0.00 4.79
1936 2224 6.040391 TGAATTAGTTGTGCAATATAAGGGGC 59.960 38.462 0.00 0.00 0.00 5.80
1937 2225 2.666317 AGTTGTGCAATATAAGGGGCC 58.334 47.619 0.00 0.00 0.00 5.80
1938 2226 2.024464 AGTTGTGCAATATAAGGGGCCA 60.024 45.455 4.39 0.00 0.00 5.36
1939 2227 2.763448 GTTGTGCAATATAAGGGGCCAA 59.237 45.455 4.39 0.00 0.00 4.52
1940 2228 3.107402 TGTGCAATATAAGGGGCCAAA 57.893 42.857 4.39 0.00 0.00 3.28
1941 2229 3.030291 TGTGCAATATAAGGGGCCAAAG 58.970 45.455 4.39 0.00 0.00 2.77
1942 2230 2.365293 GTGCAATATAAGGGGCCAAAGG 59.635 50.000 4.39 0.00 0.00 3.11
1943 2231 2.246067 TGCAATATAAGGGGCCAAAGGA 59.754 45.455 4.39 0.00 0.00 3.36
1944 2232 2.893489 GCAATATAAGGGGCCAAAGGAG 59.107 50.000 4.39 0.00 0.00 3.69
1945 2233 3.500343 CAATATAAGGGGCCAAAGGAGG 58.500 50.000 4.39 0.00 0.00 4.30
1946 2234 2.598288 TATAAGGGGCCAAAGGAGGA 57.402 50.000 4.39 0.00 0.00 3.71
1947 2235 1.693799 ATAAGGGGCCAAAGGAGGAA 58.306 50.000 4.39 0.00 0.00 3.36
1948 2236 0.702316 TAAGGGGCCAAAGGAGGAAC 59.298 55.000 4.39 0.00 0.00 3.62
1949 2237 2.037367 GGGGCCAAAGGAGGAACC 59.963 66.667 4.39 0.00 39.35 3.62
1950 2238 2.037367 GGGCCAAAGGAGGAACCC 59.963 66.667 4.39 0.00 40.05 4.11
1951 2239 2.851045 GGCCAAAGGAGGAACCCA 59.149 61.111 0.00 0.00 40.05 4.51
1952 2240 1.388133 GGCCAAAGGAGGAACCCAT 59.612 57.895 0.00 0.00 40.05 4.00
1953 2241 0.629058 GGCCAAAGGAGGAACCCATA 59.371 55.000 0.00 0.00 40.05 2.74
1954 2242 1.685180 GGCCAAAGGAGGAACCCATAC 60.685 57.143 0.00 0.00 40.05 2.39
1955 2243 1.685180 GCCAAAGGAGGAACCCATACC 60.685 57.143 0.00 0.00 40.05 2.73
1956 2244 1.923148 CCAAAGGAGGAACCCATACCT 59.077 52.381 0.00 0.00 40.05 3.08
1960 2248 2.134092 GAGGAACCCATACCTCCCG 58.866 63.158 0.00 0.00 44.70 5.14
1961 2249 0.398098 GAGGAACCCATACCTCCCGA 60.398 60.000 0.00 0.00 44.70 5.14
1962 2250 0.398664 AGGAACCCATACCTCCCGAG 60.399 60.000 0.00 0.00 0.00 4.63
1963 2251 1.446366 GAACCCATACCTCCCGAGC 59.554 63.158 0.00 0.00 0.00 5.03
1964 2252 1.003051 AACCCATACCTCCCGAGCT 59.997 57.895 0.00 0.00 0.00 4.09
1965 2253 0.620700 AACCCATACCTCCCGAGCTT 60.621 55.000 0.00 0.00 0.00 3.74
1966 2254 1.338136 ACCCATACCTCCCGAGCTTG 61.338 60.000 0.00 0.00 0.00 4.01
1967 2255 1.048724 CCCATACCTCCCGAGCTTGA 61.049 60.000 1.22 0.00 0.00 3.02
1968 2256 1.051812 CCATACCTCCCGAGCTTGAT 58.948 55.000 1.22 0.00 0.00 2.57
1969 2257 1.001406 CCATACCTCCCGAGCTTGATC 59.999 57.143 1.22 0.00 0.00 2.92
1970 2258 1.967066 CATACCTCCCGAGCTTGATCT 59.033 52.381 1.22 0.00 0.00 2.75
1971 2259 2.160721 TACCTCCCGAGCTTGATCTT 57.839 50.000 1.22 0.00 0.00 2.40
1972 2260 0.539051 ACCTCCCGAGCTTGATCTTG 59.461 55.000 1.22 0.00 0.00 3.02
1973 2261 0.179062 CCTCCCGAGCTTGATCTTGG 60.179 60.000 1.22 0.00 37.37 3.61
1975 2263 4.547859 CCGAGCTTGATCTTGGGG 57.452 61.111 1.22 0.00 34.58 4.96
1976 2264 1.907739 CCGAGCTTGATCTTGGGGA 59.092 57.895 1.22 0.00 34.58 4.81
1977 2265 0.462759 CCGAGCTTGATCTTGGGGAC 60.463 60.000 1.22 0.00 34.58 4.46
1978 2266 0.539051 CGAGCTTGATCTTGGGGACT 59.461 55.000 0.00 0.00 0.00 3.85
1979 2267 1.065854 CGAGCTTGATCTTGGGGACTT 60.066 52.381 0.00 0.00 0.00 3.01
1980 2268 2.616510 CGAGCTTGATCTTGGGGACTTT 60.617 50.000 0.00 0.00 0.00 2.66
1981 2269 3.425659 GAGCTTGATCTTGGGGACTTTT 58.574 45.455 0.00 0.00 0.00 2.27
1982 2270 3.160269 AGCTTGATCTTGGGGACTTTTG 58.840 45.455 0.00 0.00 0.00 2.44
1983 2271 2.893489 GCTTGATCTTGGGGACTTTTGT 59.107 45.455 0.00 0.00 0.00 2.83
1999 2287 7.827819 GACTTTTGTCCCATTAAATTTAGCC 57.172 36.000 0.00 0.00 43.37 3.93
2000 2288 6.707290 ACTTTTGTCCCATTAAATTTAGCCC 58.293 36.000 0.00 0.00 0.00 5.19
2001 2289 6.500400 ACTTTTGTCCCATTAAATTTAGCCCT 59.500 34.615 0.00 0.00 0.00 5.19
2002 2290 6.943899 TTTGTCCCATTAAATTTAGCCCTT 57.056 33.333 0.00 0.00 0.00 3.95
2003 2291 6.943899 TTGTCCCATTAAATTTAGCCCTTT 57.056 33.333 0.00 0.00 0.00 3.11
2004 2292 6.943899 TGTCCCATTAAATTTAGCCCTTTT 57.056 33.333 0.00 0.00 0.00 2.27
2005 2293 6.706295 TGTCCCATTAAATTTAGCCCTTTTG 58.294 36.000 0.00 0.00 0.00 2.44
2006 2294 6.498651 TGTCCCATTAAATTTAGCCCTTTTGA 59.501 34.615 0.00 0.00 0.00 2.69
2007 2295 7.181845 TGTCCCATTAAATTTAGCCCTTTTGAT 59.818 33.333 0.00 0.00 0.00 2.57
2008 2296 8.046708 GTCCCATTAAATTTAGCCCTTTTGATT 58.953 33.333 0.00 0.00 0.00 2.57
2009 2297 9.273137 TCCCATTAAATTTAGCCCTTTTGATTA 57.727 29.630 0.00 0.00 0.00 1.75
2010 2298 9.325198 CCCATTAAATTTAGCCCTTTTGATTAC 57.675 33.333 0.00 0.00 0.00 1.89
2016 2304 7.905604 ATTTAGCCCTTTTGATTACTTTTGC 57.094 32.000 0.00 0.00 0.00 3.68
2017 2305 6.664428 TTAGCCCTTTTGATTACTTTTGCT 57.336 33.333 0.00 0.00 0.00 3.91
2018 2306 5.551305 AGCCCTTTTGATTACTTTTGCTT 57.449 34.783 0.00 0.00 0.00 3.91
2019 2307 5.299949 AGCCCTTTTGATTACTTTTGCTTG 58.700 37.500 0.00 0.00 0.00 4.01
2020 2308 4.083855 GCCCTTTTGATTACTTTTGCTTGC 60.084 41.667 0.00 0.00 0.00 4.01
2021 2309 4.452114 CCCTTTTGATTACTTTTGCTTGCC 59.548 41.667 0.00 0.00 0.00 4.52
2022 2310 5.299949 CCTTTTGATTACTTTTGCTTGCCT 58.700 37.500 0.00 0.00 0.00 4.75
2023 2311 5.406477 CCTTTTGATTACTTTTGCTTGCCTC 59.594 40.000 0.00 0.00 0.00 4.70
2024 2312 5.528043 TTTGATTACTTTTGCTTGCCTCA 57.472 34.783 0.00 0.00 0.00 3.86
2025 2313 5.528043 TTGATTACTTTTGCTTGCCTCAA 57.472 34.783 0.00 0.00 0.00 3.02
2026 2314 5.528043 TGATTACTTTTGCTTGCCTCAAA 57.472 34.783 0.00 0.00 0.00 2.69
2027 2315 5.531634 TGATTACTTTTGCTTGCCTCAAAG 58.468 37.500 7.19 7.19 35.21 2.77
2028 2316 5.301551 TGATTACTTTTGCTTGCCTCAAAGA 59.698 36.000 12.76 0.00 35.21 2.52
2029 2317 5.590530 TTACTTTTGCTTGCCTCAAAGAA 57.409 34.783 12.76 4.39 35.21 2.52
2030 2318 4.470334 ACTTTTGCTTGCCTCAAAGAAA 57.530 36.364 12.76 0.00 35.21 2.52
2031 2319 4.831107 ACTTTTGCTTGCCTCAAAGAAAA 58.169 34.783 12.76 0.00 33.65 2.29
2032 2320 4.631377 ACTTTTGCTTGCCTCAAAGAAAAC 59.369 37.500 12.76 0.00 34.96 2.43
2033 2321 4.470334 TTTGCTTGCCTCAAAGAAAACT 57.530 36.364 0.00 0.00 31.05 2.66
2034 2322 4.470334 TTGCTTGCCTCAAAGAAAACTT 57.530 36.364 0.00 0.00 0.00 2.66
2035 2323 3.784338 TGCTTGCCTCAAAGAAAACTTG 58.216 40.909 0.00 0.00 0.00 3.16
2036 2324 2.541346 GCTTGCCTCAAAGAAAACTTGC 59.459 45.455 0.00 0.00 0.00 4.01
2037 2325 3.739209 GCTTGCCTCAAAGAAAACTTGCT 60.739 43.478 0.00 0.00 0.00 3.91
2038 2326 3.441496 TGCCTCAAAGAAAACTTGCTG 57.559 42.857 0.00 0.00 0.00 4.41
2039 2327 2.130395 GCCTCAAAGAAAACTTGCTGC 58.870 47.619 0.00 0.00 0.00 5.25
2040 2328 2.223900 GCCTCAAAGAAAACTTGCTGCT 60.224 45.455 0.00 0.00 0.00 4.24
2041 2329 3.378339 CCTCAAAGAAAACTTGCTGCTG 58.622 45.455 0.00 0.00 0.00 4.41
2042 2330 3.067180 CCTCAAAGAAAACTTGCTGCTGA 59.933 43.478 0.00 0.00 0.00 4.26
2043 2331 4.440525 CCTCAAAGAAAACTTGCTGCTGAA 60.441 41.667 0.00 0.00 0.00 3.02
2044 2332 4.423732 TCAAAGAAAACTTGCTGCTGAAC 58.576 39.130 0.00 0.00 0.00 3.18
2045 2333 2.763249 AGAAAACTTGCTGCTGAACG 57.237 45.000 0.00 0.00 0.00 3.95
2046 2334 2.017049 AGAAAACTTGCTGCTGAACGT 58.983 42.857 0.00 0.00 0.00 3.99
2047 2335 3.202906 AGAAAACTTGCTGCTGAACGTA 58.797 40.909 0.00 0.00 0.00 3.57
2048 2336 3.248602 AGAAAACTTGCTGCTGAACGTAG 59.751 43.478 0.00 0.00 0.00 3.51
2049 2337 1.512926 AACTTGCTGCTGAACGTAGG 58.487 50.000 0.00 0.00 0.00 3.18
2050 2338 0.320771 ACTTGCTGCTGAACGTAGGG 60.321 55.000 0.00 0.00 0.00 3.53
2051 2339 0.037326 CTTGCTGCTGAACGTAGGGA 60.037 55.000 0.00 0.00 0.00 4.20
2052 2340 0.394938 TTGCTGCTGAACGTAGGGAA 59.605 50.000 0.00 0.00 0.00 3.97
2053 2341 0.613260 TGCTGCTGAACGTAGGGAAT 59.387 50.000 0.00 0.00 0.00 3.01
2054 2342 1.828595 TGCTGCTGAACGTAGGGAATA 59.171 47.619 0.00 0.00 0.00 1.75
2055 2343 2.202566 GCTGCTGAACGTAGGGAATAC 58.797 52.381 0.00 0.00 0.00 1.89
2069 2357 4.683832 AGGGAATACGAGATGAGTTTTCG 58.316 43.478 0.00 0.00 40.02 3.46
2070 2358 3.245519 GGGAATACGAGATGAGTTTTCGC 59.754 47.826 0.00 2.33 37.84 4.70
2071 2359 3.061139 GGAATACGAGATGAGTTTTCGCG 60.061 47.826 0.00 0.00 41.34 5.87
2072 2360 2.905959 TACGAGATGAGTTTTCGCGA 57.094 45.000 3.71 3.71 38.45 5.87
2073 2361 2.279582 ACGAGATGAGTTTTCGCGAT 57.720 45.000 10.88 0.00 38.45 4.58
2074 2362 2.607187 ACGAGATGAGTTTTCGCGATT 58.393 42.857 10.88 0.00 38.45 3.34
2075 2363 2.993899 ACGAGATGAGTTTTCGCGATTT 59.006 40.909 10.88 0.00 38.45 2.17
2076 2364 3.181530 ACGAGATGAGTTTTCGCGATTTG 60.182 43.478 10.88 0.00 38.45 2.32
2077 2365 3.094294 GAGATGAGTTTTCGCGATTTGC 58.906 45.455 10.88 0.52 41.47 3.68
2078 2366 2.159517 AGATGAGTTTTCGCGATTTGCC 60.160 45.455 10.88 0.02 42.08 4.52
2079 2367 1.234821 TGAGTTTTCGCGATTTGCCT 58.765 45.000 10.88 1.39 42.08 4.75
2080 2368 1.606668 TGAGTTTTCGCGATTTGCCTT 59.393 42.857 10.88 0.00 42.08 4.35
2081 2369 2.809119 TGAGTTTTCGCGATTTGCCTTA 59.191 40.909 10.88 0.00 42.08 2.69
2082 2370 3.161306 GAGTTTTCGCGATTTGCCTTAC 58.839 45.455 10.88 0.00 42.08 2.34
2083 2371 2.095415 AGTTTTCGCGATTTGCCTTACC 60.095 45.455 10.88 0.00 42.08 2.85
2084 2372 1.524848 TTTCGCGATTTGCCTTACCA 58.475 45.000 10.88 0.00 42.08 3.25
2085 2373 1.745232 TTCGCGATTTGCCTTACCAT 58.255 45.000 10.88 0.00 42.08 3.55
2086 2374 1.745232 TCGCGATTTGCCTTACCATT 58.255 45.000 3.71 0.00 42.08 3.16
2087 2375 2.907634 TCGCGATTTGCCTTACCATTA 58.092 42.857 3.71 0.00 42.08 1.90
2088 2376 3.472652 TCGCGATTTGCCTTACCATTAT 58.527 40.909 3.71 0.00 42.08 1.28
2089 2377 3.880490 TCGCGATTTGCCTTACCATTATT 59.120 39.130 3.71 0.00 42.08 1.40
2090 2378 5.057819 TCGCGATTTGCCTTACCATTATTA 58.942 37.500 3.71 0.00 42.08 0.98
2091 2379 5.703592 TCGCGATTTGCCTTACCATTATTAT 59.296 36.000 3.71 0.00 42.08 1.28
2092 2380 5.794945 CGCGATTTGCCTTACCATTATTATG 59.205 40.000 0.00 0.00 42.08 1.90
2093 2381 6.348132 CGCGATTTGCCTTACCATTATTATGA 60.348 38.462 0.00 0.00 42.08 2.15
2094 2382 7.538575 GCGATTTGCCTTACCATTATTATGAT 58.461 34.615 0.00 0.00 37.76 2.45
2095 2383 8.673711 GCGATTTGCCTTACCATTATTATGATA 58.326 33.333 0.00 0.00 37.76 2.15
2124 2412 9.732130 ACCTAGATCTATTCTTGATTTTATGCC 57.268 33.333 2.11 0.00 35.79 4.40
2125 2413 9.956640 CCTAGATCTATTCTTGATTTTATGCCT 57.043 33.333 2.11 0.00 35.79 4.75
2134 2422 7.020827 TCTTGATTTTATGCCTAGATAGGGG 57.979 40.000 7.99 0.00 43.82 4.79
2142 2430 2.763933 GCCTAGATAGGGGCGTTAAAC 58.236 52.381 7.99 0.00 43.82 2.01
2143 2431 2.865276 GCCTAGATAGGGGCGTTAAACG 60.865 54.545 7.99 0.00 43.82 3.60
2144 2432 2.624838 CCTAGATAGGGGCGTTAAACGA 59.375 50.000 0.00 0.00 41.00 3.85
2145 2433 3.257624 CCTAGATAGGGGCGTTAAACGAT 59.742 47.826 0.00 0.00 41.00 3.73
2146 2434 4.460382 CCTAGATAGGGGCGTTAAACGATA 59.540 45.833 0.00 0.00 41.00 2.92
2147 2435 4.516365 AGATAGGGGCGTTAAACGATAG 57.484 45.455 0.00 0.00 46.05 2.08
2148 2436 2.514205 TAGGGGCGTTAAACGATAGC 57.486 50.000 0.00 0.00 46.05 2.97
2149 2437 0.529119 AGGGGCGTTAAACGATAGCG 60.529 55.000 0.00 0.00 46.05 4.26
2150 2438 1.274770 GGGCGTTAAACGATAGCGC 59.725 57.895 19.47 19.47 46.05 5.92
2151 2439 1.149964 GGGCGTTAAACGATAGCGCT 61.150 55.000 17.26 17.26 46.05 5.92
2152 2440 0.648958 GGCGTTAAACGATAGCGCTT 59.351 50.000 18.68 2.89 46.05 4.68
2153 2441 1.591394 GGCGTTAAACGATAGCGCTTG 60.591 52.381 18.68 9.06 46.05 4.01
2154 2442 1.715030 CGTTAAACGATAGCGCTTGC 58.285 50.000 18.68 7.25 46.05 4.01
2165 2453 3.741476 CGCTTGCTGGGAGGCAAC 61.741 66.667 0.00 0.00 45.64 4.17
2166 2454 3.376918 GCTTGCTGGGAGGCAACC 61.377 66.667 0.00 0.00 45.64 3.77
2167 2455 2.677875 CTTGCTGGGAGGCAACCC 60.678 66.667 11.96 11.96 45.64 4.11
2179 2467 5.878332 GGAGGCAACCCAATTTATTTTTG 57.122 39.130 0.00 0.00 37.17 2.44
2180 2468 5.312895 GGAGGCAACCCAATTTATTTTTGT 58.687 37.500 0.00 0.00 37.17 2.83
2181 2469 5.767665 GGAGGCAACCCAATTTATTTTTGTT 59.232 36.000 0.00 0.00 37.17 2.83
2182 2470 6.264292 GGAGGCAACCCAATTTATTTTTGTTT 59.736 34.615 0.00 0.00 37.17 2.83
2183 2471 7.270757 AGGCAACCCAATTTATTTTTGTTTC 57.729 32.000 0.00 0.00 37.17 2.78
2184 2472 7.059788 AGGCAACCCAATTTATTTTTGTTTCT 58.940 30.769 0.00 0.00 37.17 2.52
2185 2473 7.559533 AGGCAACCCAATTTATTTTTGTTTCTT 59.440 29.630 0.00 0.00 37.17 2.52
2186 2474 7.647318 GGCAACCCAATTTATTTTTGTTTCTTG 59.353 33.333 0.00 0.00 0.00 3.02
2187 2475 7.167302 GCAACCCAATTTATTTTTGTTTCTTGC 59.833 33.333 0.00 0.00 0.00 4.01
2188 2476 8.404765 CAACCCAATTTATTTTTGTTTCTTGCT 58.595 29.630 0.00 0.00 0.00 3.91
2189 2477 8.518430 ACCCAATTTATTTTTGTTTCTTGCTT 57.482 26.923 0.00 0.00 0.00 3.91
2190 2478 8.965819 ACCCAATTTATTTTTGTTTCTTGCTTT 58.034 25.926 0.00 0.00 0.00 3.51
2191 2479 9.800433 CCCAATTTATTTTTGTTTCTTGCTTTT 57.200 25.926 0.00 0.00 0.00 2.27
2199 2487 8.779603 TTTTTGTTTCTTGCTTTTTGTTTCTG 57.220 26.923 0.00 0.00 0.00 3.02
2200 2488 7.489574 TTTGTTTCTTGCTTTTTGTTTCTGT 57.510 28.000 0.00 0.00 0.00 3.41
2201 2489 7.489574 TTGTTTCTTGCTTTTTGTTTCTGTT 57.510 28.000 0.00 0.00 0.00 3.16
2202 2490 7.489574 TGTTTCTTGCTTTTTGTTTCTGTTT 57.510 28.000 0.00 0.00 0.00 2.83
2203 2491 8.594881 TGTTTCTTGCTTTTTGTTTCTGTTTA 57.405 26.923 0.00 0.00 0.00 2.01
2204 2492 8.707839 TGTTTCTTGCTTTTTGTTTCTGTTTAG 58.292 29.630 0.00 0.00 0.00 1.85
2205 2493 8.708742 GTTTCTTGCTTTTTGTTTCTGTTTAGT 58.291 29.630 0.00 0.00 0.00 2.24
2206 2494 9.915629 TTTCTTGCTTTTTGTTTCTGTTTAGTA 57.084 25.926 0.00 0.00 0.00 1.82
2207 2495 9.915629 TTCTTGCTTTTTGTTTCTGTTTAGTAA 57.084 25.926 0.00 0.00 0.00 2.24
2237 2525 9.941325 ATAATTCATCTAGCCTCTGTTTAGATG 57.059 33.333 12.31 12.31 46.18 2.90
2238 2526 6.798427 TTCATCTAGCCTCTGTTTAGATGT 57.202 37.500 16.10 0.00 45.53 3.06
2239 2527 6.154203 TCATCTAGCCTCTGTTTAGATGTG 57.846 41.667 16.10 0.00 45.53 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.914654 CAACAATACCAAGTGACACATAAATTG 58.085 33.333 8.59 12.22 0.00 2.32
4 5 8.087750 CCAACAATACCAAGTGACACATAAATT 58.912 33.333 8.59 0.00 0.00 1.82
6 7 6.773200 TCCAACAATACCAAGTGACACATAAA 59.227 34.615 8.59 0.00 0.00 1.40
7 8 6.299922 TCCAACAATACCAAGTGACACATAA 58.700 36.000 8.59 0.00 0.00 1.90
12 13 7.171653 TGATATTCCAACAATACCAAGTGACA 58.828 34.615 0.00 0.00 0.00 3.58
13 14 7.624360 TGATATTCCAACAATACCAAGTGAC 57.376 36.000 0.00 0.00 0.00 3.67
27 28 9.585369 TTCCAGCACATAAATATGATATTCCAA 57.415 29.630 7.40 0.00 37.15 3.53
134 137 2.026262 TCCAGCCCCTAGAAAACACATC 60.026 50.000 0.00 0.00 0.00 3.06
144 147 5.200483 TCAAAAACATATTCCAGCCCCTAG 58.800 41.667 0.00 0.00 0.00 3.02
149 171 4.427312 CAGCTCAAAAACATATTCCAGCC 58.573 43.478 0.00 0.00 0.00 4.85
260 368 1.521450 CTTGGGCAGAGCACCAACAG 61.521 60.000 7.53 0.00 41.56 3.16
390 498 4.568956 ACTTTGCAACTTTCAGTTTTGCT 58.431 34.783 0.00 0.00 44.87 3.91
438 546 5.208463 TGTGCACTTGAGTAATAGACACA 57.792 39.130 19.41 0.00 33.19 3.72
567 675 1.702401 TGAGTGTGGCCCAAATAGTGA 59.298 47.619 0.00 0.00 0.00 3.41
607 715 6.954487 TTCAGCAATGAAGCATCTATTCAT 57.046 33.333 0.00 0.00 46.69 2.57
608 716 6.762702 TTTCAGCAATGAAGCATCTATTCA 57.237 33.333 0.00 0.00 40.72 2.57
609 717 7.624706 CATTTCAGCAATGAAGCATCTATTC 57.375 36.000 0.00 0.00 44.78 1.75
646 906 8.803799 CAACACCATTGTTTGAAAGTAAGTAAC 58.196 33.333 0.00 0.00 43.89 2.50
655 915 6.322456 TGATCCTACAACACCATTGTTTGAAA 59.678 34.615 0.00 0.00 43.89 2.69
753 1013 1.762708 CATAATTCCCGGTGGCTTGT 58.237 50.000 0.00 0.00 0.00 3.16
851 1111 6.000840 TGTTGCAATACCTCATCAGTTGTTA 58.999 36.000 0.59 0.00 0.00 2.41
988 1248 2.837532 TCAGTCATGTTGCTGCACTA 57.162 45.000 0.00 0.00 33.09 2.74
1283 1544 9.661563 TCATTCGGAATACACTTTATAACAGTT 57.338 29.630 2.35 0.00 0.00 3.16
1287 1548 8.658499 ACCTCATTCGGAATACACTTTATAAC 57.342 34.615 2.35 0.00 0.00 1.89
1302 1563 9.658799 AGATTCATATTACATAACCTCATTCGG 57.341 33.333 0.00 0.00 0.00 4.30
1373 1636 1.734465 GCAGTGCATCACTAGGTTCAC 59.266 52.381 11.09 0.00 43.43 3.18
1501 1767 7.373617 TGCCTTATGTTGGATGAGATAACTA 57.626 36.000 0.00 0.00 0.00 2.24
1503 1769 6.942532 TTGCCTTATGTTGGATGAGATAAC 57.057 37.500 0.00 0.00 0.00 1.89
1514 1780 9.027129 CATGAATGAGTATTTTGCCTTATGTTG 57.973 33.333 0.00 0.00 0.00 3.33
1531 1815 3.473625 TGAGGTATGCTGCATGAATGAG 58.526 45.455 24.59 0.00 0.00 2.90
1758 2046 9.793259 ACCTTCTTTCTAAACAACATGATCTAA 57.207 29.630 0.00 0.00 0.00 2.10
1759 2047 9.793259 AACCTTCTTTCTAAACAACATGATCTA 57.207 29.630 0.00 0.00 0.00 1.98
1760 2048 8.697507 AACCTTCTTTCTAAACAACATGATCT 57.302 30.769 0.00 0.00 0.00 2.75
1761 2049 8.023706 GGAACCTTCTTTCTAAACAACATGATC 58.976 37.037 0.00 0.00 0.00 2.92
1762 2050 7.725844 AGGAACCTTCTTTCTAAACAACATGAT 59.274 33.333 0.00 0.00 0.00 2.45
1763 2051 7.060421 AGGAACCTTCTTTCTAAACAACATGA 58.940 34.615 0.00 0.00 0.00 3.07
1764 2052 7.277174 AGGAACCTTCTTTCTAAACAACATG 57.723 36.000 0.00 0.00 0.00 3.21
1765 2053 9.232473 GATAGGAACCTTCTTTCTAAACAACAT 57.768 33.333 0.00 0.00 0.00 2.71
1766 2054 7.386848 CGATAGGAACCTTCTTTCTAAACAACA 59.613 37.037 0.00 0.00 0.00 3.33
1767 2055 7.601508 TCGATAGGAACCTTCTTTCTAAACAAC 59.398 37.037 0.00 0.00 0.00 3.32
1768 2056 7.673180 TCGATAGGAACCTTCTTTCTAAACAA 58.327 34.615 0.00 0.00 0.00 2.83
1769 2057 7.235935 TCGATAGGAACCTTCTTTCTAAACA 57.764 36.000 0.00 0.00 0.00 2.83
1770 2058 7.764901 ACATCGATAGGAACCTTCTTTCTAAAC 59.235 37.037 0.00 0.00 0.00 2.01
1771 2059 7.848128 ACATCGATAGGAACCTTCTTTCTAAA 58.152 34.615 0.00 0.00 0.00 1.85
1772 2060 7.419711 ACATCGATAGGAACCTTCTTTCTAA 57.580 36.000 0.00 0.00 0.00 2.10
1773 2061 7.342284 AGAACATCGATAGGAACCTTCTTTCTA 59.658 37.037 0.00 0.00 0.00 2.10
1774 2062 5.941555 ACATCGATAGGAACCTTCTTTCT 57.058 39.130 0.00 0.00 0.00 2.52
1775 2063 6.342111 AGAACATCGATAGGAACCTTCTTTC 58.658 40.000 0.00 0.00 0.00 2.62
1776 2064 6.301169 AGAACATCGATAGGAACCTTCTTT 57.699 37.500 0.00 0.00 0.00 2.52
1777 2065 5.941555 AGAACATCGATAGGAACCTTCTT 57.058 39.130 0.00 0.00 0.00 2.52
1778 2066 6.130569 ACTAGAACATCGATAGGAACCTTCT 58.869 40.000 0.00 1.20 0.00 2.85
1779 2067 6.039493 TGACTAGAACATCGATAGGAACCTTC 59.961 42.308 0.00 0.00 0.00 3.46
1780 2068 5.892119 TGACTAGAACATCGATAGGAACCTT 59.108 40.000 0.00 0.00 0.00 3.50
1781 2069 5.446860 TGACTAGAACATCGATAGGAACCT 58.553 41.667 0.00 0.00 0.00 3.50
1782 2070 5.769484 TGACTAGAACATCGATAGGAACC 57.231 43.478 0.00 0.00 0.00 3.62
1783 2071 9.745880 TTTATTGACTAGAACATCGATAGGAAC 57.254 33.333 0.00 0.00 0.00 3.62
1784 2072 9.967346 CTTTATTGACTAGAACATCGATAGGAA 57.033 33.333 0.00 0.00 0.00 3.36
1785 2073 9.132923 ACTTTATTGACTAGAACATCGATAGGA 57.867 33.333 0.00 0.00 0.00 2.94
1786 2074 9.751542 AACTTTATTGACTAGAACATCGATAGG 57.248 33.333 0.00 0.00 0.00 2.57
1789 2077 9.877178 AGAAACTTTATTGACTAGAACATCGAT 57.123 29.630 0.00 0.00 0.00 3.59
1790 2078 9.140286 CAGAAACTTTATTGACTAGAACATCGA 57.860 33.333 0.00 0.00 0.00 3.59
1791 2079 9.140286 TCAGAAACTTTATTGACTAGAACATCG 57.860 33.333 0.00 0.00 0.00 3.84
1793 2081 8.940952 GCTCAGAAACTTTATTGACTAGAACAT 58.059 33.333 0.00 0.00 0.00 2.71
1794 2082 8.150945 AGCTCAGAAACTTTATTGACTAGAACA 58.849 33.333 0.00 0.00 0.00 3.18
1795 2083 8.541133 AGCTCAGAAACTTTATTGACTAGAAC 57.459 34.615 0.00 0.00 0.00 3.01
1799 2087 9.998106 ACTTAAGCTCAGAAACTTTATTGACTA 57.002 29.630 1.29 0.00 0.00 2.59
1800 2088 8.910351 ACTTAAGCTCAGAAACTTTATTGACT 57.090 30.769 1.29 0.00 0.00 3.41
1824 2112 9.498307 CCGTTGTTCTGAATGGTAAAATTATAC 57.502 33.333 0.00 0.00 0.00 1.47
1825 2113 8.679100 CCCGTTGTTCTGAATGGTAAAATTATA 58.321 33.333 0.00 0.00 30.90 0.98
1826 2114 7.543756 CCCGTTGTTCTGAATGGTAAAATTAT 58.456 34.615 0.00 0.00 30.90 1.28
1827 2115 6.570764 GCCCGTTGTTCTGAATGGTAAAATTA 60.571 38.462 0.00 0.00 30.90 1.40
1828 2116 5.778862 CCCGTTGTTCTGAATGGTAAAATT 58.221 37.500 0.00 0.00 30.90 1.82
1829 2117 4.321675 GCCCGTTGTTCTGAATGGTAAAAT 60.322 41.667 0.00 0.00 30.90 1.82
1830 2118 3.004944 GCCCGTTGTTCTGAATGGTAAAA 59.995 43.478 0.00 0.00 30.90 1.52
1831 2119 2.554893 GCCCGTTGTTCTGAATGGTAAA 59.445 45.455 0.00 0.00 30.90 2.01
1832 2120 2.156098 GCCCGTTGTTCTGAATGGTAA 58.844 47.619 0.00 0.00 30.90 2.85
1833 2121 1.349688 AGCCCGTTGTTCTGAATGGTA 59.650 47.619 0.00 0.00 30.90 3.25
1834 2122 0.110486 AGCCCGTTGTTCTGAATGGT 59.890 50.000 0.00 0.00 30.90 3.55
1835 2123 2.009774 CTAGCCCGTTGTTCTGAATGG 58.990 52.381 0.00 0.00 0.00 3.16
1836 2124 2.009774 CCTAGCCCGTTGTTCTGAATG 58.990 52.381 0.00 0.00 0.00 2.67
1837 2125 1.679032 GCCTAGCCCGTTGTTCTGAAT 60.679 52.381 0.00 0.00 0.00 2.57
1838 2126 0.321298 GCCTAGCCCGTTGTTCTGAA 60.321 55.000 0.00 0.00 0.00 3.02
1839 2127 1.192146 AGCCTAGCCCGTTGTTCTGA 61.192 55.000 0.00 0.00 0.00 3.27
1840 2128 0.321653 AAGCCTAGCCCGTTGTTCTG 60.322 55.000 0.00 0.00 0.00 3.02
1841 2129 0.400594 AAAGCCTAGCCCGTTGTTCT 59.599 50.000 0.00 0.00 0.00 3.01
1842 2130 1.199327 GAAAAGCCTAGCCCGTTGTTC 59.801 52.381 0.00 0.00 0.00 3.18
1843 2131 1.202891 AGAAAAGCCTAGCCCGTTGTT 60.203 47.619 0.00 0.00 0.00 2.83
1844 2132 0.400594 AGAAAAGCCTAGCCCGTTGT 59.599 50.000 0.00 0.00 0.00 3.32
1845 2133 1.534729 AAGAAAAGCCTAGCCCGTTG 58.465 50.000 0.00 0.00 0.00 4.10
1846 2134 2.287977 AAAGAAAAGCCTAGCCCGTT 57.712 45.000 0.00 0.00 0.00 4.44
1847 2135 1.886542 CAAAAGAAAAGCCTAGCCCGT 59.113 47.619 0.00 0.00 0.00 5.28
1848 2136 2.159382 TCAAAAGAAAAGCCTAGCCCG 58.841 47.619 0.00 0.00 0.00 6.13
1849 2137 3.320826 TGTTCAAAAGAAAAGCCTAGCCC 59.679 43.478 0.00 0.00 0.00 5.19
1850 2138 4.584327 TGTTCAAAAGAAAAGCCTAGCC 57.416 40.909 0.00 0.00 0.00 3.93
1851 2139 6.042777 ACTTTGTTCAAAAGAAAAGCCTAGC 58.957 36.000 4.91 0.00 33.81 3.42
1852 2140 7.484140 AGACTTTGTTCAAAAGAAAAGCCTAG 58.516 34.615 4.91 0.00 33.81 3.02
1853 2141 7.122055 TGAGACTTTGTTCAAAAGAAAAGCCTA 59.878 33.333 4.91 0.00 33.81 3.93
1854 2142 6.071391 TGAGACTTTGTTCAAAAGAAAAGCCT 60.071 34.615 4.91 0.00 33.81 4.58
1855 2143 6.099341 TGAGACTTTGTTCAAAAGAAAAGCC 58.901 36.000 4.91 0.00 33.81 4.35
1856 2144 7.489113 TCATGAGACTTTGTTCAAAAGAAAAGC 59.511 33.333 4.91 0.00 33.81 3.51
1857 2145 8.801913 GTCATGAGACTTTGTTCAAAAGAAAAG 58.198 33.333 0.00 0.00 41.64 2.27
1858 2146 8.687824 GTCATGAGACTTTGTTCAAAAGAAAA 57.312 30.769 0.00 0.00 41.64 2.29
1874 2162 5.895216 CTTTTGGCAAAAAGTCATGAGAC 57.105 39.130 24.15 0.00 44.84 3.36
1908 2196 8.849168 CCCTTATATTGCACAACTAATTCATCA 58.151 33.333 0.00 0.00 0.00 3.07
1909 2197 8.299570 CCCCTTATATTGCACAACTAATTCATC 58.700 37.037 0.00 0.00 0.00 2.92
1910 2198 7.255942 GCCCCTTATATTGCACAACTAATTCAT 60.256 37.037 0.00 0.00 0.00 2.57
1911 2199 6.040391 GCCCCTTATATTGCACAACTAATTCA 59.960 38.462 0.00 0.00 0.00 2.57
1912 2200 6.447162 GCCCCTTATATTGCACAACTAATTC 58.553 40.000 0.00 0.00 0.00 2.17
1913 2201 5.304357 GGCCCCTTATATTGCACAACTAATT 59.696 40.000 0.00 0.00 0.00 1.40
1914 2202 4.832823 GGCCCCTTATATTGCACAACTAAT 59.167 41.667 0.00 0.00 0.00 1.73
1915 2203 4.211920 GGCCCCTTATATTGCACAACTAA 58.788 43.478 0.00 0.00 0.00 2.24
1916 2204 3.203263 TGGCCCCTTATATTGCACAACTA 59.797 43.478 0.00 0.00 0.00 2.24
1917 2205 2.024464 TGGCCCCTTATATTGCACAACT 60.024 45.455 0.00 0.00 0.00 3.16
1918 2206 2.383855 TGGCCCCTTATATTGCACAAC 58.616 47.619 0.00 0.00 0.00 3.32
1919 2207 2.836636 TGGCCCCTTATATTGCACAA 57.163 45.000 0.00 0.00 0.00 3.33
1920 2208 2.836636 TTGGCCCCTTATATTGCACA 57.163 45.000 0.00 0.00 0.00 4.57
1921 2209 2.365293 CCTTTGGCCCCTTATATTGCAC 59.635 50.000 0.00 0.00 0.00 4.57
1922 2210 2.246067 TCCTTTGGCCCCTTATATTGCA 59.754 45.455 0.00 0.00 0.00 4.08
1923 2211 2.893489 CTCCTTTGGCCCCTTATATTGC 59.107 50.000 0.00 0.00 0.00 3.56
1924 2212 3.140144 TCCTCCTTTGGCCCCTTATATTG 59.860 47.826 0.00 0.00 0.00 1.90
1925 2213 3.413075 TCCTCCTTTGGCCCCTTATATT 58.587 45.455 0.00 0.00 0.00 1.28
1926 2214 3.089421 TCCTCCTTTGGCCCCTTATAT 57.911 47.619 0.00 0.00 0.00 0.86
1927 2215 2.512476 GTTCCTCCTTTGGCCCCTTATA 59.488 50.000 0.00 0.00 0.00 0.98
1928 2216 1.288037 GTTCCTCCTTTGGCCCCTTAT 59.712 52.381 0.00 0.00 0.00 1.73
1929 2217 0.702316 GTTCCTCCTTTGGCCCCTTA 59.298 55.000 0.00 0.00 0.00 2.69
1930 2218 1.465172 GTTCCTCCTTTGGCCCCTT 59.535 57.895 0.00 0.00 0.00 3.95
1931 2219 2.548547 GGTTCCTCCTTTGGCCCCT 61.549 63.158 0.00 0.00 0.00 4.79
1932 2220 2.037367 GGTTCCTCCTTTGGCCCC 59.963 66.667 0.00 0.00 0.00 5.80
1933 2221 2.037367 GGGTTCCTCCTTTGGCCC 59.963 66.667 0.00 0.00 36.25 5.80
1934 2222 0.629058 TATGGGTTCCTCCTTTGGCC 59.371 55.000 0.00 0.00 36.25 5.36
1935 2223 1.685180 GGTATGGGTTCCTCCTTTGGC 60.685 57.143 0.00 0.00 36.25 4.52
1936 2224 1.923148 AGGTATGGGTTCCTCCTTTGG 59.077 52.381 0.00 0.00 36.25 3.28
1937 2225 3.283259 GAGGTATGGGTTCCTCCTTTG 57.717 52.381 0.00 0.00 42.96 2.77
1942 2230 0.398098 TCGGGAGGTATGGGTTCCTC 60.398 60.000 2.96 2.96 46.62 3.71
1943 2231 0.398664 CTCGGGAGGTATGGGTTCCT 60.399 60.000 0.00 0.00 36.70 3.36
1944 2232 2.041206 GCTCGGGAGGTATGGGTTCC 62.041 65.000 0.00 0.00 0.00 3.62
1945 2233 1.049289 AGCTCGGGAGGTATGGGTTC 61.049 60.000 0.00 0.00 37.39 3.62
1946 2234 0.620700 AAGCTCGGGAGGTATGGGTT 60.621 55.000 0.19 0.00 38.35 4.11
1947 2235 1.003051 AAGCTCGGGAGGTATGGGT 59.997 57.895 0.19 0.00 38.35 4.51
1948 2236 1.048724 TCAAGCTCGGGAGGTATGGG 61.049 60.000 0.19 0.00 38.35 4.00
1949 2237 1.001406 GATCAAGCTCGGGAGGTATGG 59.999 57.143 0.19 0.00 38.35 2.74
1950 2238 1.967066 AGATCAAGCTCGGGAGGTATG 59.033 52.381 0.19 3.00 38.35 2.39
1951 2239 2.366916 CAAGATCAAGCTCGGGAGGTAT 59.633 50.000 0.19 0.00 38.35 2.73
1952 2240 1.757118 CAAGATCAAGCTCGGGAGGTA 59.243 52.381 0.19 0.00 38.35 3.08
1953 2241 0.539051 CAAGATCAAGCTCGGGAGGT 59.461 55.000 0.00 0.00 41.53 3.85
1954 2242 0.179062 CCAAGATCAAGCTCGGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
1955 2243 0.179062 CCCAAGATCAAGCTCGGGAG 60.179 60.000 0.00 0.00 35.57 4.30
1956 2244 1.626356 CCCCAAGATCAAGCTCGGGA 61.626 60.000 0.00 0.00 35.57 5.14
1957 2245 1.153086 CCCCAAGATCAAGCTCGGG 60.153 63.158 0.00 0.00 0.00 5.14
1958 2246 0.462759 GTCCCCAAGATCAAGCTCGG 60.463 60.000 0.00 0.00 0.00 4.63
1959 2247 0.539051 AGTCCCCAAGATCAAGCTCG 59.461 55.000 0.00 0.00 0.00 5.03
1960 2248 2.797177 AAGTCCCCAAGATCAAGCTC 57.203 50.000 0.00 0.00 0.00 4.09
1961 2249 3.160269 CAAAAGTCCCCAAGATCAAGCT 58.840 45.455 0.00 0.00 0.00 3.74
1962 2250 2.893489 ACAAAAGTCCCCAAGATCAAGC 59.107 45.455 0.00 0.00 0.00 4.01
1963 2251 3.507622 GGACAAAAGTCCCCAAGATCAAG 59.492 47.826 3.27 0.00 37.54 3.02
1964 2252 3.496331 GGACAAAAGTCCCCAAGATCAA 58.504 45.455 3.27 0.00 37.54 2.57
1965 2253 3.154827 GGACAAAAGTCCCCAAGATCA 57.845 47.619 3.27 0.00 37.54 2.92
1982 2270 6.941857 TCAAAAGGGCTAAATTTAATGGGAC 58.058 36.000 0.00 0.00 0.00 4.46
1983 2271 7.747809 ATCAAAAGGGCTAAATTTAATGGGA 57.252 32.000 0.00 0.00 0.00 4.37
1984 2272 9.325198 GTAATCAAAAGGGCTAAATTTAATGGG 57.675 33.333 0.00 0.00 0.00 4.00
1990 2278 8.783093 GCAAAAGTAATCAAAAGGGCTAAATTT 58.217 29.630 0.00 0.00 0.00 1.82
1991 2279 8.156820 AGCAAAAGTAATCAAAAGGGCTAAATT 58.843 29.630 0.00 0.00 0.00 1.82
1992 2280 7.679783 AGCAAAAGTAATCAAAAGGGCTAAAT 58.320 30.769 0.00 0.00 0.00 1.40
1993 2281 7.061566 AGCAAAAGTAATCAAAAGGGCTAAA 57.938 32.000 0.00 0.00 0.00 1.85
1994 2282 6.664428 AGCAAAAGTAATCAAAAGGGCTAA 57.336 33.333 0.00 0.00 0.00 3.09
1995 2283 6.454795 CAAGCAAAAGTAATCAAAAGGGCTA 58.545 36.000 0.00 0.00 0.00 3.93
1996 2284 5.299949 CAAGCAAAAGTAATCAAAAGGGCT 58.700 37.500 0.00 0.00 0.00 5.19
1997 2285 4.083855 GCAAGCAAAAGTAATCAAAAGGGC 60.084 41.667 0.00 0.00 0.00 5.19
1998 2286 4.452114 GGCAAGCAAAAGTAATCAAAAGGG 59.548 41.667 0.00 0.00 0.00 3.95
1999 2287 5.299949 AGGCAAGCAAAAGTAATCAAAAGG 58.700 37.500 0.00 0.00 0.00 3.11
2000 2288 5.984926 TGAGGCAAGCAAAAGTAATCAAAAG 59.015 36.000 0.00 0.00 0.00 2.27
2001 2289 5.911752 TGAGGCAAGCAAAAGTAATCAAAA 58.088 33.333 0.00 0.00 0.00 2.44
2002 2290 5.528043 TGAGGCAAGCAAAAGTAATCAAA 57.472 34.783 0.00 0.00 0.00 2.69
2003 2291 5.528043 TTGAGGCAAGCAAAAGTAATCAA 57.472 34.783 0.00 0.00 0.00 2.57
2004 2292 5.301551 TCTTTGAGGCAAGCAAAAGTAATCA 59.698 36.000 11.36 0.00 35.09 2.57
2005 2293 5.772521 TCTTTGAGGCAAGCAAAAGTAATC 58.227 37.500 11.36 0.00 35.09 1.75
2006 2294 5.789643 TCTTTGAGGCAAGCAAAAGTAAT 57.210 34.783 11.36 0.00 35.09 1.89
2007 2295 5.590530 TTCTTTGAGGCAAGCAAAAGTAA 57.409 34.783 11.36 5.32 35.09 2.24
2008 2296 5.590530 TTTCTTTGAGGCAAGCAAAAGTA 57.409 34.783 11.36 3.25 35.09 2.24
2009 2297 4.470334 TTTCTTTGAGGCAAGCAAAAGT 57.530 36.364 11.36 0.00 35.09 2.66
2010 2298 4.872124 AGTTTTCTTTGAGGCAAGCAAAAG 59.128 37.500 0.00 1.61 35.09 2.27
2011 2299 4.831107 AGTTTTCTTTGAGGCAAGCAAAA 58.169 34.783 0.00 0.00 35.09 2.44
2012 2300 4.470334 AGTTTTCTTTGAGGCAAGCAAA 57.530 36.364 0.00 0.00 34.40 3.68
2013 2301 4.183101 CAAGTTTTCTTTGAGGCAAGCAA 58.817 39.130 0.00 0.00 38.17 3.91
2014 2302 3.784338 CAAGTTTTCTTTGAGGCAAGCA 58.216 40.909 0.00 0.00 38.17 3.91
2015 2303 2.541346 GCAAGTTTTCTTTGAGGCAAGC 59.459 45.455 0.00 0.00 38.17 4.01
2016 2304 3.800506 CAGCAAGTTTTCTTTGAGGCAAG 59.199 43.478 0.00 0.00 38.17 4.01
2017 2305 3.784338 CAGCAAGTTTTCTTTGAGGCAA 58.216 40.909 0.00 0.00 38.17 4.52
2018 2306 2.481795 GCAGCAAGTTTTCTTTGAGGCA 60.482 45.455 0.00 0.00 38.17 4.75
2019 2307 2.130395 GCAGCAAGTTTTCTTTGAGGC 58.870 47.619 0.00 0.00 38.17 4.70
2020 2308 3.067180 TCAGCAGCAAGTTTTCTTTGAGG 59.933 43.478 0.00 0.00 38.17 3.86
2021 2309 4.297299 TCAGCAGCAAGTTTTCTTTGAG 57.703 40.909 0.00 0.00 38.17 3.02
2022 2310 4.423732 GTTCAGCAGCAAGTTTTCTTTGA 58.576 39.130 0.00 0.00 38.17 2.69
2023 2311 3.241322 CGTTCAGCAGCAAGTTTTCTTTG 59.759 43.478 0.00 0.00 38.17 2.77
2024 2312 3.119495 ACGTTCAGCAGCAAGTTTTCTTT 60.119 39.130 0.00 0.00 38.17 2.52
2025 2313 2.423538 ACGTTCAGCAGCAAGTTTTCTT 59.576 40.909 0.00 0.00 41.31 2.52
2026 2314 2.017049 ACGTTCAGCAGCAAGTTTTCT 58.983 42.857 0.00 0.00 0.00 2.52
2027 2315 2.475200 ACGTTCAGCAGCAAGTTTTC 57.525 45.000 0.00 0.00 0.00 2.29
2028 2316 2.290641 CCTACGTTCAGCAGCAAGTTTT 59.709 45.455 0.00 0.00 0.00 2.43
2029 2317 1.873591 CCTACGTTCAGCAGCAAGTTT 59.126 47.619 0.00 0.00 0.00 2.66
2030 2318 1.512926 CCTACGTTCAGCAGCAAGTT 58.487 50.000 0.00 0.00 0.00 2.66
2031 2319 0.320771 CCCTACGTTCAGCAGCAAGT 60.321 55.000 0.00 0.00 0.00 3.16
2032 2320 0.037326 TCCCTACGTTCAGCAGCAAG 60.037 55.000 0.00 0.00 0.00 4.01
2033 2321 0.394938 TTCCCTACGTTCAGCAGCAA 59.605 50.000 0.00 0.00 0.00 3.91
2034 2322 0.613260 ATTCCCTACGTTCAGCAGCA 59.387 50.000 0.00 0.00 0.00 4.41
2035 2323 2.202566 GTATTCCCTACGTTCAGCAGC 58.797 52.381 0.00 0.00 0.00 5.25
2036 2324 2.460918 CGTATTCCCTACGTTCAGCAG 58.539 52.381 0.00 0.00 46.46 4.24
2037 2325 2.572191 CGTATTCCCTACGTTCAGCA 57.428 50.000 0.00 0.00 46.46 4.41
2045 2333 5.686397 CGAAAACTCATCTCGTATTCCCTAC 59.314 44.000 0.00 0.00 0.00 3.18
2046 2334 5.735354 GCGAAAACTCATCTCGTATTCCCTA 60.735 44.000 0.00 0.00 35.06 3.53
2047 2335 4.683832 CGAAAACTCATCTCGTATTCCCT 58.316 43.478 0.00 0.00 0.00 4.20
2048 2336 3.245519 GCGAAAACTCATCTCGTATTCCC 59.754 47.826 0.00 0.00 35.06 3.97
2049 2337 3.061139 CGCGAAAACTCATCTCGTATTCC 60.061 47.826 0.00 0.00 35.06 3.01
2050 2338 3.789756 TCGCGAAAACTCATCTCGTATTC 59.210 43.478 6.20 0.00 35.06 1.75
2051 2339 3.766151 TCGCGAAAACTCATCTCGTATT 58.234 40.909 6.20 0.00 35.06 1.89
2052 2340 3.416119 TCGCGAAAACTCATCTCGTAT 57.584 42.857 6.20 0.00 35.06 3.06
2053 2341 2.905959 TCGCGAAAACTCATCTCGTA 57.094 45.000 6.20 0.00 35.06 3.43
2054 2342 2.279582 ATCGCGAAAACTCATCTCGT 57.720 45.000 15.24 0.00 35.06 4.18
2055 2343 3.337130 CAAATCGCGAAAACTCATCTCG 58.663 45.455 15.24 0.00 35.70 4.04
2056 2344 3.094294 GCAAATCGCGAAAACTCATCTC 58.906 45.455 15.24 0.00 0.00 2.75
2057 2345 2.159517 GGCAAATCGCGAAAACTCATCT 60.160 45.455 15.24 0.00 43.84 2.90
2058 2346 2.159517 AGGCAAATCGCGAAAACTCATC 60.160 45.455 15.24 0.00 43.84 2.92
2059 2347 1.812571 AGGCAAATCGCGAAAACTCAT 59.187 42.857 15.24 0.00 43.84 2.90
2060 2348 1.234821 AGGCAAATCGCGAAAACTCA 58.765 45.000 15.24 0.00 43.84 3.41
2061 2349 2.331809 AAGGCAAATCGCGAAAACTC 57.668 45.000 15.24 3.23 43.84 3.01
2062 2350 2.095415 GGTAAGGCAAATCGCGAAAACT 60.095 45.455 15.24 4.49 43.84 2.66
2063 2351 2.247637 GGTAAGGCAAATCGCGAAAAC 58.752 47.619 15.24 2.68 43.84 2.43
2064 2352 1.880675 TGGTAAGGCAAATCGCGAAAA 59.119 42.857 15.24 0.00 43.84 2.29
2065 2353 1.524848 TGGTAAGGCAAATCGCGAAA 58.475 45.000 15.24 0.00 43.84 3.46
2066 2354 1.745232 ATGGTAAGGCAAATCGCGAA 58.255 45.000 15.24 0.00 43.84 4.70
2067 2355 1.745232 AATGGTAAGGCAAATCGCGA 58.255 45.000 13.09 13.09 43.84 5.87
2068 2356 3.896648 ATAATGGTAAGGCAAATCGCG 57.103 42.857 0.00 0.00 43.84 5.87
2069 2357 6.908825 TCATAATAATGGTAAGGCAAATCGC 58.091 36.000 0.00 0.00 35.09 4.58
2098 2386 9.732130 GGCATAAAATCAAGAATAGATCTAGGT 57.268 33.333 8.70 0.00 37.42 3.08
2099 2387 9.956640 AGGCATAAAATCAAGAATAGATCTAGG 57.043 33.333 8.70 0.00 37.42 3.02
2108 2396 8.112183 CCCCTATCTAGGCATAAAATCAAGAAT 58.888 37.037 0.00 0.00 42.26 2.40
2109 2397 7.461749 CCCCTATCTAGGCATAAAATCAAGAA 58.538 38.462 0.00 0.00 42.26 2.52
2110 2398 7.020827 CCCCTATCTAGGCATAAAATCAAGA 57.979 40.000 0.00 0.00 42.26 3.02
2122 2410 2.763933 GTTTAACGCCCCTATCTAGGC 58.236 52.381 0.00 0.00 46.17 3.93
2123 2411 2.624838 TCGTTTAACGCCCCTATCTAGG 59.375 50.000 13.06 0.00 42.21 3.02
2124 2412 3.996150 TCGTTTAACGCCCCTATCTAG 57.004 47.619 13.06 0.00 42.21 2.43
2125 2413 4.082571 GCTATCGTTTAACGCCCCTATCTA 60.083 45.833 13.06 0.00 42.21 1.98
2126 2414 3.305881 GCTATCGTTTAACGCCCCTATCT 60.306 47.826 13.06 0.00 42.21 1.98
2127 2415 2.991866 GCTATCGTTTAACGCCCCTATC 59.008 50.000 13.06 0.00 42.21 2.08
2128 2416 2.608752 CGCTATCGTTTAACGCCCCTAT 60.609 50.000 13.06 3.37 42.21 2.57
2129 2417 1.269206 CGCTATCGTTTAACGCCCCTA 60.269 52.381 13.06 0.00 42.21 3.53
2130 2418 0.529119 CGCTATCGTTTAACGCCCCT 60.529 55.000 13.06 0.31 42.21 4.79
2131 2419 1.929376 CGCTATCGTTTAACGCCCC 59.071 57.895 13.06 0.51 42.21 5.80
2132 2420 1.274770 GCGCTATCGTTTAACGCCC 59.725 57.895 13.06 0.17 43.58 6.13
2133 2421 4.866301 GCGCTATCGTTTAACGCC 57.134 55.556 13.06 0.51 43.58 5.68
2135 2423 1.715030 GCAAGCGCTATCGTTTAACG 58.285 50.000 12.05 11.60 37.02 3.18
2157 2445 5.312895 ACAAAAATAAATTGGGTTGCCTCC 58.687 37.500 0.00 0.00 32.02 4.30
2158 2446 6.875948 AACAAAAATAAATTGGGTTGCCTC 57.124 33.333 0.00 0.00 32.02 4.70
2159 2447 7.059788 AGAAACAAAAATAAATTGGGTTGCCT 58.940 30.769 0.00 0.00 32.02 4.75
2160 2448 7.270757 AGAAACAAAAATAAATTGGGTTGCC 57.729 32.000 0.00 0.00 32.02 4.52
2161 2449 7.167302 GCAAGAAACAAAAATAAATTGGGTTGC 59.833 33.333 0.00 0.00 31.93 4.17
2162 2450 8.404765 AGCAAGAAACAAAAATAAATTGGGTTG 58.595 29.630 0.00 0.00 32.02 3.77
2163 2451 8.518430 AGCAAGAAACAAAAATAAATTGGGTT 57.482 26.923 0.00 0.00 32.02 4.11
2164 2452 8.518430 AAGCAAGAAACAAAAATAAATTGGGT 57.482 26.923 0.00 0.00 32.02 4.51
2165 2453 9.800433 AAAAGCAAGAAACAAAAATAAATTGGG 57.200 25.926 0.00 0.00 32.02 4.12
2173 2461 9.396938 CAGAAACAAAAAGCAAGAAACAAAAAT 57.603 25.926 0.00 0.00 0.00 1.82
2174 2462 8.401709 ACAGAAACAAAAAGCAAGAAACAAAAA 58.598 25.926 0.00 0.00 0.00 1.94
2175 2463 7.924940 ACAGAAACAAAAAGCAAGAAACAAAA 58.075 26.923 0.00 0.00 0.00 2.44
2176 2464 7.489574 ACAGAAACAAAAAGCAAGAAACAAA 57.510 28.000 0.00 0.00 0.00 2.83
2177 2465 7.489574 AACAGAAACAAAAAGCAAGAAACAA 57.510 28.000 0.00 0.00 0.00 2.83
2178 2466 7.489574 AAACAGAAACAAAAAGCAAGAAACA 57.510 28.000 0.00 0.00 0.00 2.83
2179 2467 8.708742 ACTAAACAGAAACAAAAAGCAAGAAAC 58.291 29.630 0.00 0.00 0.00 2.78
2180 2468 8.825667 ACTAAACAGAAACAAAAAGCAAGAAA 57.174 26.923 0.00 0.00 0.00 2.52
2181 2469 9.915629 TTACTAAACAGAAACAAAAAGCAAGAA 57.084 25.926 0.00 0.00 0.00 2.52
2211 2499 9.941325 CATCTAAACAGAGGCTAGATGAATTAT 57.059 33.333 14.69 0.00 46.36 1.28
2212 2500 8.928448 ACATCTAAACAGAGGCTAGATGAATTA 58.072 33.333 22.95 10.85 46.36 1.40
2213 2501 7.714377 CACATCTAAACAGAGGCTAGATGAATT 59.286 37.037 22.95 10.42 46.36 2.17
2214 2502 7.215789 CACATCTAAACAGAGGCTAGATGAAT 58.784 38.462 22.95 5.27 46.36 2.57
2215 2503 6.577103 CACATCTAAACAGAGGCTAGATGAA 58.423 40.000 22.95 0.00 46.36 2.57
2216 2504 6.154203 CACATCTAAACAGAGGCTAGATGA 57.846 41.667 22.95 2.52 46.36 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.