>input_sequence_86179
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-----------------------------------------------------------ATGACTGATGCTATGCGTGAG
ATTGCAAGTGCTATCAACAACACTTGCCATGCTGAAACACACCTTGACTTGTACAAGGCTGTCATGGACCTTACTGTGTT
TGATCAAAATGATCGCTTGGTTGTTCTAGATTATCTCACAGAACATAAGGCAAAAGGCCTCAACTTTGTGAAGATGAATG
ATGAAGTCCG-TCAAGCATCGTTCAAACGTATCTTGAAAGCTAATCCTGATCTTCTTTGA--------------------
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>chr1D_1_TraesCS1D01G238000
AAACAATTTATGTGTCACTTGGTATTGTTGGAATATCATATTTATGTGCTGGAATATCATATTTATGTGCTGGAAT-TCA
TTTTTAGGTGCTGGAATATCATATTTATGTGCTGGAAT-TCATTTTTAGGTGCTGGGATGTGTTTTCTAGG---------
----------GGCTG---------------------GAATATGTTTTTGAGCTGCTGA---------------------A
ATATGT-------------------------------------------TTTTATGTGTTGGGATGTGTTATTAACTTCT
GGAATTTTTT-TGTTGTAGATGGATGATGAGGTGCTGGAGGTTCCAACTGTTGGTGCTCTGCCCAAGAAGGCCCCCAAGG
TCATGAATTGGACTCCGCCTATGTCGGCAATGATGTTGAAAGGTCTTTCAGAGGTGGCGGAAAGAGGTGCCAAGACTGAC
AAAGGATTCAAAGAGGCAGCAAAACTGAAAGTTGCAAAGTCTATATCTGCTTTCGTTGGTTATGATGTGTCTATTACTCA
AGTGCACAATCATATTCGCAAGTGGCGGAATAGGTGGACAAGAATTGTTTATTTGAAGAGTTTAAGTGGGGCACTTTGGG
ATGATGACAAGAAGATGGTACTTCTAGAAGAACATCACTATTTGGGCCACACTCAGGTATGCATGCACTTTGAAATGAAT
A-------------------------------------------------------------------------------
-------------------------------------------------------------------------GATGCTT
CATTGCTGAAATGATGTCTTTGTTAGTTACTTACTTTCAAACAATGGTGTTGTAGGATCATCCAACAGATGCTGAACTTC
TCAATTCCCCACTTGAGAACTACAACTATATGGAAAATTGCTTTGCTAATAAACAAGCCACCGGGAATTATGCAATGGCC
ATCGGTGTGCCACTGGGAACACCTATCTTTGTGGAAGACAAAGATAAACCCAATGTCATGGAGGGGCATGTAACAACTGA
TGAGGTATTGCAACATCTTCCTGGGTCTAACTTCGTACTTCCAACTGCTAGTGCCACTCAGGACCCTTCACCTACTTCAA
ATAAGAAGAGAAAGAGGGCATCAGGTTTGACTGAGGAGGACACAATCTAGTGCAGCAACATGACTGATGCTATGCGTGAG
ATTGCAAGTGCTATCAACAACACTTGCCATGCTGAAACACACCTTGACTTGTACAAGGCTGTCATGGACCTTACTGTGTT
TGATCAAAATGATCGCTTGGTTGTTCTAGATTATCTCACAGAACATAAGGCAAAAGGCCTCAACTTTGTGAAGATGAATG
ATGAAGTCCG-TCAAGCATCGTTCAAACGTATCTTGAAAGCTAATCCTGATCTTCTTTGAGTTCGTGTTAGTCGGTGCTT
GTCGAGACTACCCCTTTTGTAATAACTGTTATAAAGTGTATTCCGAATGAGGTTATGTAATA--TGAATCTACTGATGCA
GTACTAGAAATTATGGTTATTATGTCTAATGTAATGTGAACCTAGTGATGCACTGCTACAATTCTGGCTTATTATGTCTT
ATGTTAATTGTTG-AA--TTTTTTTCTTCACATTATCATCATTCAGATTATGTTGGCATAGTAATGTTTTATTGCTTGAA
TTGTTTTAGTTATCTCATCCAACATA------------------AGGCAAAATACTCATTCATGCAGCATACCTC--A--
TGCAGTCTACCAAACACCGTCTCAGCACACCATGTCTTCTCTGATGCAGGCTACCAAACACAGTCTCAGCTCAGCATGCA
TCAGTACATACATTGCTACCAAACAGCTGCAGTTGCATGTACTCAGCATGTCTAGACTAAGCATGTCTCAAAGGGGAACA
ACTATGCTAGGGTGGGAATAGCTACCAAACACACCCTTACAATCTTTAGATCATGTTGTTTAGAAAGAAGGTTCCTATCG
ATGTTCTAGTCAATAAAGTTTCTGAGCTTAAGTATAATTTTACCATTCAGAACAACGGGCTAGGCTTTTCTTTTGAACAA
AGTCTCATGACTTTTTGCCAAAAGAATTCTTATAATGATGAATTAGTTGTGCAATATAAGGGGCCAAAGGAGGAACCCAT
ACCTCCCGAGCTTGATCTTGGGGACTTTTGTCCCATTAAATTTAGCCCTTTTGATTACTTTTGCTTGCCTCAAAGAAAAC
TTGCTGCTGAACGTAGGGAATACGAGATGAGTTTTCGCGATTTGCCTTACCATTATTATGATAATACCTAGATCTATTCT
TGATTTTATGCCTAGATAGGGGCGTTAAACGATAGCGCTTGCTGGGAGGCAACCCAATTTATTTTTGTTTCTTGCTTTTT
GTTTCTGTTTAGTAATAAATAATTCATCTAGCCTCTGTTTAGATGTG
>chr5B_23
TATAT------------------------------------------GCTGGAATATCATATTTATGTGCTGGAAT-TCA
TTTTTAGGTGCTGGAATATCATTTTTATGTGCTGGAATATC-TTTTTAGGTGCTGGAATGTGTTTTTTATG---------
----------TGCTG---------------------AAATATGTTTTTGAGCTACTGA---------------------A
ATATGTGTTCGAGCTACTGGAATACCAT---------------------TTTTATGTGTTGCGATGTGTTATTAACTTCT
GGATTTTTTTATGTTGTAGATGGATGATGAAGTGCTGGAGGTTCCAATTGTTGGTGCTCTGCCCAAGAAGGCCCCCAAGG
TCATGAATTGGACTCCGCCTATGTCGACAATGATGTTGAAAGGTATTTCAGAGGTGGCGGAAAGAGGTGCCAAGACTGAC
AAAGGATTCAAAGAGGCTACAAAACTGAAA-TTGCAAAGTCTATATCTGCTTTCGTTGGTTATGACGTGTCTATTACTCA
AGTGCACAATCATATTCGCAAGTGGCGGAATAGGTGGACAAGGATTGTTTATTTGAAGAGTTTAAGTGGGGCACTTTGGG
ATGATGACAAGAAAATGGTAGTTCTAGAAGGACAACACTATTTGGGCCACACTTAGGTATGCATGCACATTTATCAACCC
TTTTTGTCTGCTGAAAAGAGTTGTCTTATTGTTGAAATGGTGTTGGAATGAGTTAGTTTTGCCAAAATGAATAGATTTTA
TAGCTGAAATGATGTTGTAGTCAATTACTTTTGTTGAACTTATGTTGGAATGAGTTACTTTTGGTCATATGATGATGCTT
CATTGCTGAAATTTTGTCTTTGTTAATTACTTACGTTCAAACAATGGTGTTGTAGGATCATCCAATAGATGCTGAACTTC
TCAATCCCCCACTTGAGAACTACAACTATATGGAAAATTGCTTTGCTAATAAGCAAGCCAGCAGGAATTATGCAATGGCC
ACCGGTGTGCCACTGGGAACGCCTATTGTTGTGGAAGACAAATATAAACCCAATGTCATGGAGGGGCATGGAACAACTGA
TGAGGTATTACAACATCTTCCTGGGTCTAGCTCCGTACTTCCAACTACTAGTGCCACTCAGGACCCTTCACCTACTTCAA
ATAAGAAGAGAAAGAGGGCATCAGGTTTGACTGAGGAGGACACAATCCAGTGCAGCAACATGACTGATGCTATGCGTGAG
ATTGCAAGTGCTATCAACAACACTTGCCATGCTGAAACACACCCTGACTTGTACAAGGCTATCATAGACCTTATTGTGTT
TGATCAAAATGATCACTTGGCTGTTCTAGATTATCTCACAGAACATAAGGCAAAAGGCCTCAACTTTGTGAAGATGAATG
ATGAAGTCCG-TAAAGCATCGTTCAAACGTATCTTGAAAGCCAATCCTGATCTTCTTCGAGTTCGTGTTAGTCGGTGCTT
GTCGAGACTACCCCTTTTGTAGTGACTATTATAAAGTGTATTTCGAATGAGGTTATGTAATATGTGAATCTACTGACGCA
GTACTAGAAATTATGGTTATTATGTCTAATGTAATATGAACCTAGTGATGCACTGCTACAATTCAGGCTTATTATGTCTT
ATGTTAATTGTTG-AT--TTTTTT-CTTCACATTCTCATCATTCAGATTATGTTGGCATAGTAATGTTTTATTGCTTGAA
TTGTTTAAATTATCTTATCGAACATA------------------TGGCAAAATATCCGTTCATG----------------
--CAGTCTACCAAACACCGTCTCAACACACCATGTCTTCTCTGATGCAGGCTACCAAACACAGTCTCAGCTCAGCATGCA
TCAGTACATATATTGCTATCAAACAGGTGCAGTTGCATGTACTCAGCATGTCTAGACTAAGCATGTCTCAAAGGGGAACA
ACTA----------------------------------------------------------------------------
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>chr1A_26
TGATGAAATATGCTTTTTTAGGTGCTGGA---------------------------------------------ACATCA
TTTTTAGGTGCTGGAATGTGTTATTTATGTGCTGGAATATCATTTTTAGGTGCTGGAATGTGTTATTTATG---------
----------TGCTG---------------------AAATATGTTTTTG-------------------------------
-----------T-CTGCTGGAATATCATTTTTTATGTGCTGGAATATCATTTTAGGTGCTGGAATGTGTTATTAACTTCT
GGAA-TGTTTATGGTATAGATGGATGATGACGTGCTGGAGGTTCCAAATGTTGGTGCTCTTCCCAAGAAGGCCCCCAAGG
TCATGAATTGGACTCCGCCTATGTTGGCAATGATGTTGAAAGGTCTTTCAGAGGTGGCGGCAAGAGGTGCCAAGACTGAC
AAAGGATTCAAAGAGGCTGAAAAATTGAAAGTTGCAAAGTGTATATCTGCTTTCGTTGGTTATGACGTGTCTATTACTCA
AGTGCACAATCATATTCGCAAGTGGCGGAATAGGTGGACAAGGATTGTTTATTTGAAGGGTTTAAGTGGGGCACTTTGGG
ATGATGACAAGAAGATGGTAGTTCTAGAAGAACAACACTATTTGGGCCACACTCAGGTATGCATGCAC------------
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>chr4D_26
TGCTGGAATATCA-TTTTTATGTGCCGGA---------------------------------------------ATATCA
TATTTATGTGTTGGAAT-TCATTTTTATGAGCTGGAATATCA-TTTTAGGTGCTGGAATGTGTTTTTTATG---------
----------TGCTG---------------------AAGTATGTTTTTGAGCTGCTGAAATATGTTTTCGAGCTGCTGGA
ATAT---------------------CAT---------------------TTTTATGTGTTGCGATGTGTTATTAACTTCT
GGAA-TTTTTATGTTGTAGATGGATGATGAGGTGCTGGAGGTTCCAAGTGTTGGTGCTCTGCCCAAGAAGGCCCCCAAGG
TCATGAATTGGACTCCGCCTATGTCGGCAATGATGTTGAAAGGTCTTTCAGAGGTGGCGGAAAGAGGTGCCAAGACTAAC
AAAGGATTCAAAGAGGCTGCAAAATTGAAAGTTGCAAAGTGTATATGTGCTTTTGTTGGTTATGACATGTCTATTACTCA
AGTGCACAATCATATTCGCAAGTGGCGGAATAGGTGGACAAGGATTGTTTAGTTGAAGAGTTTAAGTGGGGCACTTTGGG
ATGATGACAAGAAGATGGCAGTTCTAGAAGAACAACACTATTTGGGCCACACTCAGGTATGCATGCACATTT--------
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>chr5A_26
-------------------------TGCTGAAATATGCTTTTTAGGTGCTGGAACATCA---------------------
-TTTTAGGTGCTGGAATATGTTATTTATGTGCTGGAATATCATTT-TAGATGCTGAAATGTGTTATTTATG---------
----------TGCTG---------------------AAATATGCTTTTG-------------------------------
-----------T-CTGCTGGAATATCATTTTTTATGTGCTGGAATATCATTTTAGGTGCTGGAATGTGTTATTAACTTCT
GGAA-TGTTTATGGTGTAGATGGATGATGACGTGCTGGAGGTTCCAAATGTTGGTGCTCTTCCCAAGAAGGCCCCCAAGG
TCATGAATTGGACTCCGCCTATGTCGACAATGATGTTGAAAGGTCTTTCAGAGGTGGTGGCAAGAGGTGCCAAGACTGAC
AAAGGATTCAAAGAGGCTGAAAAATTAAAAGTTGCAAAGTGTATATCTGCTTTCGTTGGTTATGACGTGTCTATTACTCA
AGTGCACAATCATATTCGCAAGTGGCGGAATAGGTGGACAAGGATTGTTTATTTGAAGGGTTTAAGTGGGGCACTTTGGG
ATGATGACAAGAAGATGGTAGTTCTAGAAGAACAACACTATTTGGGCCATACTCAGGTATGCATGCACATGTATCAACCC
TTTTTCCCTACTGAAATGAGTTGTCTTATTGCTGAAACGGTGTTGAAATGAGTTAGTTTTGCGGAAATGAATAGATTTTA
TAGTTGACATGATGTTGTAGTCAATTACTTTTGTTGAACTGATGTTGAAATGAGTTACTTTTGGTCATATGATGATGCCT
CATTGCTGAAATGCCGTCTTTTTTAATTACTTATGTT----CAATGATGTTGTAGGATCATCCAACAGATGCTGAATTGC
TAAATTCCCCACTTGAGAACTACAACTATATGGAAAATTGCTTTGCTAATAAGCAAGCCACCGGGAATTATGCAATGGCC
ACCGGTGTGCCACTCGGAACGCCTATTGTTGTGGAAGACAAAGATAAACCCGATGTCATGGAGGGGCAAGGAACAACTGA
TGAGGTATTGCAACATCTTCCTGGGTCTAACTCGGTACTTCCTACTGCTAGTGCCTCTCAGGACCTTTCTCCTACTTCAA
ATAAGAAGAGAAAGAGGGCATCTGGCTTGACTGAGGAGGACTCAATCCAGTGTAGCAACATGACCGATGCTATGCATGAG
ATTGCAAGTGCTATCAAGAACACTTGCCATGCTGAGACACACCCTGACTTGTACAACGCTGTCATGGACCTTCTTGTGTT
TGAGCAAGATGAGCACTTGGCTGTTTTAGATTATCTCACAGAACATAAGGCAAAAGGCATTAACTTTGTGAAGATGAATG
ATGAAGTCCG-AAAAGCATCGTTCAAGCGAATCTTGAAAGCCAATCCCGATCTTCTTTGAGTTGTTGTTAGCTAGTGCTT
GATGAGACTATCCCTTTTGTAATGCCTATTATAAAGTGTACTTCAAATGAGACTATGTAATA--TGAATTTAGTGATGCA
CTGCTACC-ATTATGGTTATTATGTCTTATGTAATATGAATCTAGTGTTGCACTGCTTCAAATTAAGGTTATTATGTGTT
ATGTTAATTGTTG-AT--TATTTT-ATTTATATTATCATTGTTCAGATTATGTTGGCATGGTAACATTTTAATTGCTGAA
ATGTT---------------------------------------------------------------------------
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>chr4D_28
TTG------------------------GA---------------------------------------------ACATCA
TTTTTAGGTGCTGGAATGTGTTATTTATGTGCTGGAATACCATTTTTAGGTGCTGAAATGTGTAATTTATG---------
----------TGCTG---------------------GAATATGTTTTTGAGCTGCTGA---------------------A
ATATGCTTTTGT-CTGCTGGAATATCATTTTTTATGTGCTGGAATATCATTTTAGGTGCTGGAATGTGTTATTAACTTCT
GGAA-TGTTTATGTTGTAGATGGATGGTGAGGTGCTGGAGGTTCCAAATGTTGGTGCTCTTCCCAAGAAGGCCCCCAAGG
TCATGAATTGGACTCCGCCTATGTCGGCAATGATGTTGAAAGGTCTTTCAGAGGTGGTGGCAAGAGGTGCCAAGACTGAC
AAAGGACTCAAAGAGGCTGAAAAATTGAAAGTTGCAAAGTGTATATCTGCTTTTGTTGGTTATGACGTGTCTATTACTCA
AGTGCACAATCATATTCGCAAGTGGCGGAATATGTGGACAAGGATTGTTTATTTGAAGGGTTTAAGTGGGGCACTTTGGG
ATGATGACAAGAAGATGATAGTTCTAGAAGAACAACACTATTTGGGCCACACTCAGGTATGCATGCACATGTATCAACCC
TTTTTCCTTGCTGAAATGAGTTGTCTTATTGCTGAAACGGTGTTGAAATGAGTTAGTGTTGCAGAAATGAATAGATTTTA
TAGTTGACATGATGTTGTAGTCAATTACTTTTGTTGAACTGATGTTGAAATGAGTTACTTTTGGTCATATGATGATGCCT
CATTGCTGAAATGCCGTCTTTTTTAATTACTTGTGTTCAAACAATGATGTTGTAGGATCATCCAACAGATGCTGAATTGC
TAAATTTCCCACTTGAGAACTACAACTATATGGAAAATTGCTTTTCTAATAAGCAAGCCACCGGGAATTATGCAATGGCC
ACCGGTGTGCCACTCAGAACGCCTATTGTTGTGGAAGACAAAGATAAACCCAATGTCATGGAGGGGCAAGGAACAACTGA
TGAGGTATTGCAACATCTTCCGGGGTCTAACTCCGTACTTCCTACTGCTAGTGCCTCTTAGGACCCTTCTCCTACTTCAA
ATAAGAAGAGAAAGAGGACATCTGGATTGACTGAGGAGGACTCAATCCAGTGTAGCAACATGACTGATGCTATGCGTGGG
ATTGCAAGTGCTATCAACAACACTTGCCATGCTGAGACACACCCTGACTTGTACAACGCTATCATGGACCTTCTTGTGTT
TGAGCAAGATGAGCGCTTGGCTGTTTTAGATTATCTCATAGAACATAAGGCAAAAGGCCTTAACTTTGTGAAGATGAATG
ATGAAGTCCG-AAAAGCATCGTTCAAGCGAATCTTGAAAGCCAATCCCGATCTTCTTTGAGTTGTTGTTAGTTGGTGCTT
GATGAGACTATCCCTTTTGTAATGCCTATTATAAAGTGTACTTCAAATGAGACTATGTAATATG--AATCTAGTGATGCA
CTGCTACCAATTATGGTTATTATGTCTTATGTAATATGAATCTAGTGATGCACTGCTTCAAATTAAGGTTATCATGTGTT
ATGTTAATTGTTG-AT--TATTTT-ATTTATATTATCATTGTTCAGATTATGTTGGCATGGTAACATTTTAATGCTCGAA
TTGTTTCATGAATTGTCGAAATGTTGTTTCAATATTTGTCTTGGTGGCAAAAAAATCGTTCATGCAGCATACCTC--AGA
TACAGGCTACCAAACACAGTCTCAGTGCAACATGT-TTGTCTGATGCAGCATACCAAAGATAGTCTCAGCTCAGCATGCA
TGAGTACATTCATTGCTACCAACCAACTGCAGTTGCATGTACTGAGCATGTCTAGACTAAGCATGTCTCATATGGGAACA
ACTATGCTAGGGTGGGAACAACTACCAAACACACCCTTA-----------------------------------------
--------------------------------------------------------------------------------
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>chr4B_39
--------------------------------------TATTTATGTGCTGGAATTC-ATTTTTAAGTGCTGGAATATCA
TTTTTATGTGCTGGAATATCATATTTAGGTGCTGGAATATCATTTTTAGGTGCTGGAATGTGTTTTTTATG---------
----------TGCTG---------------------AAATATGTTTTCGAGCTGTTGG---------------------A
ATAT---------------------CAC---------------------TTTTATGTGTTGCGATGTGTTATTAACTTCT
GGAA-TTTTTATGTTGTAGATGGATGATGAGGTGCTGGAGGTTCCAAGTGTTGGTGCTCTGCCCAAGAAGGCCCCCAAGG
TAATGAATTGGACTCGGCCTATGTCTGCAATGATTTTGAAAGGTCTTTCAGAGGTGGCGGAAAGAGGTGCCAATACTGAC
AAAGGATTCAAAGAGGCTGCAAAACTGAAAGTTGCAAAGTGTATATCTGCTTTCGTTGGTTATGACCTGTCTATTACTCA
AGTGCACAATCATATTCGCAAGTGGCGGAATAGGTGGACAAGGATTGTTTAGTTGAAGAGTTTAAGTGGGGCACTTTGGG
ATGATGACAAGAAGATGGTAGTTCTAGAAGAACAACACTATTTGGGCCACACTCAGGTATGGATGCACATTTATCAACCC
TTTTTGTTTGCTGAAATGAATTGTCTTATTGCTGAAACGGTGTTGGAATGAGTTAATTTTGCGGAAATGA----------
--------------------------------------------------------------------------------
--------------TGTCTTTGTTAATTACTTACGTTCAAACAATGGTGTTGTAGGATCACCCAACAGATGTTGAACTTC
TCAATTCCCCACTTGAGAACTACAACTATATGGAAAATTGCTTTGCTAATAAGCAAGCCACC-GGAATTATGCAATGGCC
ACCAGTGTGCCACTGGGAACGCCTATTGTTGTGGAAGACAAAGATAAACCCAATGTCATGGAGGGGCATGGAACAACTGA
TGAGGTATTACAACATCTTCCTAGATCTAGCTCCGTGCTTCCAACTACTAGTGTCACTCAGGACCCTTCACCTACTTCAA
ATAAGAAGAGAAAGAGAGCATCAGGTTTGACTGAGGAGGACACAATCCAGTGCAGCAACATGATTGATGCTATGCATGAG
ATTGCAAGTGCTATCAACAACACTTGCCATGCTGAAACACACCCTGACTTGTACAAGGCTGTCATGGACCTTATTGTGTT
TGATCAAAATGATCGCTTGGCTGTTCTAGATTATCTCATAGAACATAAGGCAAAAGGCCTCAACTTTGTGAAGATGAATG
ATGAAGTTCG-TAAAGCATCGTTCAAACGTATCTTGAAAGCCAATCCTGATCTTCTTTGAGTGTGTGTTAGTCGGTGCTT
GTCGAGACTACCCCTTTTGTAATGACTATTATAAAGTGTATTTTGAATGAGGTTATGTAATATG--AATCTATTGATGCA
GTACTAGAAATTATGGTTATTATGTCTAATGTAATATGAACCTACTGATGCACTGCTACAATTCAGGCTTATTATGTCTT
ATGTTAATTGTTG-AT--TTTTTTTC---ACATTATCATCATTCAGATTATGTTGGCATAGTAATGTTTTATTGCTTGAA
TTGTTTAAATTATCTCAACAAACATA------------------TGGCAAAATATCCGTTCATGCAGCATACCTC--A--
TGCAATCTACCAAACACCATCTCAGCACACCATGTCTTCTCTGATGCAGGCTACCAAACACAGTCTCAGCTCAGCATGCA
TCAGTACATTCATTGCTACCAAACAACTGCAGTTGCATGTACTCAGCATGTCTAGACTAAGCATGTCTCAAAGGGGAATA
GCTATGCTAGGGTGGGAATAGCTACCAAACACACCCTTA-----------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>chr1A_39
--------------------------------------TATTTATGTGCTGGAATTC-ATTTTTAGGTGCTAGAC-----
----------------CGTCATTTATAGGTGTTGGAATGTCATTTTTAGGTGCTGGAATCTGTTTTTTATG---------
----------TGCTGAAATACATTTTTGAGCTGCTAAAATATGTTTTTGAGCTGCTGT---------------------A
ATAT---------------------CAT---------------------TTTTATGTGCTGGGATGTGTTATTAACTTCT
GAAA-TTTTTATGTTGTAGATGGATGATGAGGTGCTGGAGGTTCCTCATGTTGGTGCTCTGCCCAAGAAGGCCCCCAAGG
TCATGAATTGGACTCCGCCCATGTCGGCAATGATGTTGAAAGGTCTTTCAGAGGTGGCAGCAAGAGGTGCCAAGACTGAT
AAAGGATTCAAAGAGGCTGCAAAATTGAAAGTTGCAAAGTCTATATCTGCTTTGGTTGGTTATGACGTGTCTATTACTCA
AGTGCACAATCATATCCACAGGTGGCGGAATAGGTGGACAAGGATTGTTTATTTGAAGAGTTTAAGTGGGGCACTTTGGG
ATGATGACAAGAAGATGGTACTTCTAGAAGAACAACACTATTTGGGCCACACTCAGGTATGCATGC-----TATCAACCC
CGTTTACCTGCTGAAATGAGTTGTCTTATTGCTGAAACGATGTTGAAATGAGTTAGTTTTGCGAAAATGAATAGATTTTA
TAGTTGAAATGATGTTGTAG------------------------------------------------------------
------------GATGTCTTTGTTAATTACTTATGTTCAAACAATGGTGTTGTAGGATCATCCAACAGATGCTGAACTTC
TTAATTCCCCACTTGAGAACTACAACTATATGGAAAATTGCTTTGCTAATAAGCAAGCCACCGGGAATTATGCAATGGCC
ACTGGTGTGCCATTGGGAACGCCTATTGTTGTGGAAGACAAAGATAAACCCAATGTTATGGAGGGGCATGGAACAACTGA
TGAGGTATTGCAACACCTTCCTGGGTCTAACTCTGCACTTCCAACTGCTAGTGCCACTCAGGACCCTTCACCTACTTCAA
ATAAGAAGAGAAAGAGGGCATCAGGTTTGACTGAGGAGGACACAATCCAGTGCAGTAACATGACTGATGCTATCCGTGAG
ATTGCAAGTGCTATCAACAACACTTGCCATGCTGAAACACACCCTGACTTGTACAAGGCTGTCATGGACCTTATTATGTT
TGAGCAAAATGATCGCTTGGCTGTTCTAGATTATCTCACAGAACATAAGGCAAAAGGCCTCAACTTTGTGAAGATGAATG
ATGAAGCCCG-TCAAGCATCGTTCAAACGTATCTTGAAAGCCAATCCTGATCTTCTTTGAGTTCGTGTTAGTCGGTGCTT
GTTGAGACTACCCCTTTTGTAATGACTATTATAAAGTTTATGTCGAATGAGGTTATGTACTATG--AATCTACTGATGCA
TTACTAGAAATTATGGTTATTATGTCTAATGTAATATGAAC------ATGCACTGCTACAATTCATGGTCATTATGTCTT
ATGTTAATTGTTGAATTTTTTTCTTC---ACATTATCATCATTCAGATTATGTTGGCATGGTAATGTTTTATTGCTTGAA
TTGTTTAAATTATCTCGTCGATCATA------------------TGGCAAAATATCCGTTCATGCACCCTACCTC--A--
TGCAGTCTGCCAAACACCGTCTCAGCACACCATGTCTTCTCTGATGCAGGCTACCAAACAGAGTCTCAGCTCAGCATGCA
TCAATACATACATTGCTACCAAACAGCTGCAGTTGCATGTACTCAGCATGTCTAGACTAAGCATGTCTCAAAGGGGAACA
ACTATGCTAGGGTGGGAATAGCTACCAAACACACCCTTACA---------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------
>chr6B_53
----------------------------------------------------AATTC-ATTTTTAGGTGCTAGAC-----
----------------TGTCATTTTTAGGTGCTGGAATGTCATTTTTAGGTGCTAGAATCTGTTTTTATGTGCTGAAATA
CATTTTGAGCTGCTG---------------------AAATATGTTTTTGAGCTGCTGT---------------------A
ATAT---------------------CAT---------------------TTTTATGTGCTGGGATGTGTTATTAACTTCT
GGAA-TTTTTATGTTGTAGATGGATGATGAGGTGCTGGAGGTTCCTCATGTTGGTGCTCTGCCCAAGAAAGCCCCCAAGG
TCATGAATTGGACTCCGCCTATGTCGGCAATGATGTTGAAAGGTCTTTCAGAGGTGGCAGCAAGAGGTGCCAAGACTGAT
AAAGGATTCAAAGAGGCTGCAAAATTTAAAGTTGCAAAGTCTATATCTGCTTTGGTTGGTTATGACGTGTCTATTACTCA
AGTGCACAATCATATCCGCAAGTGGCGGAATAGGTGGACAAGGATTGTTTATTTGAAGAGTTTAAGTGGGGCACTTTGGG
ATGATGACAAGAAGATGGTACTTCTAGAAGAACAACACTATTTGGGCCACACTCAGGTATGCATGC-----TATCAACCC
TGTTTACCTGCTGAAATGAGTTGTCTTATTGCTGAAACGATGCTGAAATGAGTTAGTTTTGCGGAAATGAATAGATTTTA
TAGTTGAAATGATGTTGTAG------------------------------------------------------------
------------GATGTCTTTGTTAATTACTTATGTTCAAACAATGGTGTTGTAGGATCATCCAACAGATGCTGAACTTC
TTAATTCCCCACTTGAGAACTACAACTATATGGAAAATTGCTTTGCTAATAAGCAAGCCACCGGGAATTATGCAATGGCC
ACCGGTGTGCCATTGGGAACGCCGATTGTTGTGGAAGACAAAGATAAACCCAATGTTATGGAGGGGCATGGAACAACTGA
TGAGGTATTGCAACATCTTCCTGGGTCTAACTCTGCACTTCCAACTGCTAGTGCCACTCAGGACCCTTCACCTACTTCAA
ATAAGAAGAGAAAGAGGGCATCAGGTTTGACTGAGGAGGACACAATCCAGTGCAGAAACATGACTGATGCTATGCGTGAG
ATTGCAAGTGCTATCAACAACACTTGCCATGCTGAAACACACCCTGACTTGTACAAGGCTGTCATGGACCTTATTGTGTT
TGAGCAAAATGATCGCTTGGCTGTTCTAGATTATCTCACAGAACATAAGGCAAAAGGCTTCAACTTTGTGAAGATGAATG
ATGAAGTCCG-TCAAGCATCGTTCAAACGTATCTTGAAAGCCAATCCTGATCTTCTTTGAGTTCGTGTTAGTCGGTGCTT
GTTGAGACTACCCCTTTTGTAATGACTATTATAAAGTTTATTTCGAATGAGGTTATGTACTATG--AATCTACTGATGCA
GTATTAGAAATTATGGTTATTATGTCTAATGTAATATGAACCTAGTGATGCACTGCTACAATTCATGGTTATTATGTCTT
ATGTTAATTG----------------------------------------------------------------CTTGAA
TTGTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>chr6D_82
--------------------------------------------------------------------------------
--TTTATGTTCTGGAAT-TCATTTTTAGGTGCTGGAATATCATTTTTAGGTGCGGGAATGTGTTTTTTATG---------
----------TGCTG---------------------AAATATGTTTTTGAGCTGCTGG---------------------A
ATAT---------------------CAT---------------------TTTTATGTGCTGGGATGTGTTATTAACTTCT
GGAA-TTATTATTTTGTAGATGGATGATGAGGTGCTGGAGGTTCCAAATGTTGATGCTCTGCCCAAGAAGGCCCCCAAGG
TCATGAATTGGACTCCGCCTATGTCGGCGATGATGTTGAAAGGTCTTTTAGAGGTGGCGGCAAGAGGTGCCAAGACTGAC
AAAGGATTCAAAGAAGCTGCAAAATTGAAAGTTGCAAATTGTATATCTGCTTTCGTTGGTTATGACATGTCTATTACTCA
AGTGCATAATCATATTCGCAAGTGGCAGAATAGGTGGACAAGGATTGTTTATTTGAAGAGTTTAAGTGGGGCACTTTGGG
ATGATGACAAGAAGGTGGTACTTCTAGAAGAACAACACTATTTGGGCCACACTCAGGTATGCATGCAC------------
--------------------------------------------------------------------------------
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>chr3D_606
AA------------------------------------------------------------------------------
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--------------------------------------------------------------------ATGATGATGTTT
CATAGCTGAAATGATGTCTCAGTTAATTATTTTTGTTCAAT---TGGTGTTGTAGGATCATCCAACAGATGCTGAATTGC
TCAATTCTCCACTGGAGAACTACGACTATATGGAACTTTGCTTTGCTAATAAGCATGCCACTGGGAAGTATGCAATGGGC
CCCGGTGTGCCCCTAGGAACGCCTATTGTTGTGGAAGACAAGGATAAACCGAATGTCATGGAGGGGGAAGGAACAACAGA
TGAGGTATTGCAACATCAGCCTGGGTCTAACTTTGTACTTCCTACTACTAGTGCCACTCAGGACCCTTCTCCTACTTCAA
ATAAGAAGAGAAAGAGGGCATCTGGCTTGACTGAGGAGGACTCAATCCAGTGTAGCAACATGACTGATGCTATGCGTGAG
ATTGCAAGTGCTATCAACAACACTTGCCATGCTGAGACACACCTTGACTTGTACAACGCTGTCATGGACCTTCTTGTGTT
TGAGCAAGATGAGCGCTTGGCTGTTTTAGATTATCTCACAGAACATAAGGCAAAAGGCCTTAACTTTGTGAAGATGAATG
ATGAAGTCCG-AAAAGCATCATTCAAGCGAATCTTGAAAGCCAATCCCGATCTTCTTTGAGTTGTTGTTAGTTGGTGCTT
GATGAGACTATCCCTTTTGTAATGCCTATTATAAAGTGTACTTCAAATGAGACTATGTAATATG--AATCTAGTGATGCA
CTGCTACCAATTATGGTTATTATGTCTTATGTAATATGAATCTAGTGATGCACTGCTTCAAATTAAGGTTATCATGTGTT
ATGTTAATTGTTG-AT--TATTTT-ATTTATATTATCATTGTTCAGATTATGTTGGCATGGTAACATTTTATTGCTCGAA
TTGTTTCATGAATTGTCGAAATGTTGTTTCAATATTTGTCTTGGCGGCAAAAAAATCGTTCATGCAGCATACCTCAGA--
TACAAGCTACCAAACACAGTCTCAGTGCAACATGTCTTGTCTGATGCAGCCTACCAAACACAGTCTCAGCTCAGCATGCA
TGAGTACATACATTGCTACCAAACAACTGCAGTTGCAGGTACTGAGCATGTCTAGACTAAGCATGTCTCATATGGGAACA
ACTATGCTAGGGTGGGCACAGCTACCAAACACACCCTTA-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>chr7B_615
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------GATACTT
CATTGCTGAAATGACATCTCTGTTAATTAATTTTGTTCAAAAAATGGTGTTGTAGGATCATCCAACAGATGCTGAATTTC
TCAATTCCCCACTTGAGAACTACAACTATATGGAAAATTGCTTTGCTAATAAGCAAGCCATCGGGAATTATGCAATGGCC
ACCGATGTGCCACTGGGAACGCCTATTGTTGTGGAAGACAAAGATAAACCCAATGTCATGGAGGGGCAAGGAACAACTGA
TGAGGTATTGCAACATCTTCATGGGTCTAACTCTGTAATTCCTATTGGTAGTGCTACTCAGGACCCTTCACCTACTTCAA
ATAAGAATAGAAAGAGGGTATTAGGTTTGACCGAGGAGGGCTCAATCCAGTGTAGCAACATGACTGATGCTATGC-TGAG
ATTGCAAGTGCTATCAACAACACTTGCCATGCTGAAACACACCCTGACTTGTACAAGGTTGTCATGGACCTTACTGTGTT
TGATCAAAATGACCGCTTGGCTGTTTTAGATTATCTCACAGAACATAAGGCAAAAGGCCTTAACTTTGTGAGTATGAATG
ATGAAGTCCG-TCAAGCATCGTTCAAACGTATCTTGAAAGCCAATCCTGATCTTCTTTGAGTTCATGTTAGTTGGTGCTT
GTTGATACTATCCCTTTTGTAATGACTATTATAAGGTGTATTTTGAATGAGGTTATGTAATATG--AATCTACTGATGCA
CTACTACAAATTATGGTTATTATGTCTAATGTAATATGAACCTAGTGATTAACCTCTACAAATCATGGTTATTATGTCTT
ATGTTAATTGTTG-ATATTTTTCTTC---ATATTATTATCATTCAGATTATGTTGGTATGGTAATGTTTTATTGCTTGGA
TTGTTTAGATTATCTCATCGAACATA------------------AGGCAAAATATTCGTTCATGCAGCCTATCTC--A--
TACATGCTACCAAACACAGTCTCATCACACCATGTCTTGTCTGAGGCAGGCTACCAAACACAGTCTCAGCTCAGTATGCG
TCAGTACATACATTACTACCAAACAGCTGCAATTGTATGTACTCAGC---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>chr4A_911
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------AGTGCCACTCAGGACCCTTCACCTACTTCAA
ATAAGAAGAGAAAGAGGGCATCAGGTTTGACTGAGGA---CTCAATCCAGTGCAGCGACATGATTGATGCTATGCGTGAG
ATTGCAAGTGCTATCAACAAGACTTGCCATGCTGAAACACACCCTGACTTGTACAAGGCTGTCATGGACCTTACTATGTT
TGATCAAAATGATCGCTTAACTGTTTTAGATTATCTCACAGAACATAAGGCAAAAGGTCTTAACTTTGTGAAGATGAATG
ATGAAGTTCGTAAA-GCATCGTTCAAATGTATCTTGAAAGCTAATCCTAATCTTCTTTGAGTTCGTGTTAGTTGGTGCTT
GTTGAGACTATCCTTTTTGTAATGACTATTATAAAGTGCATTTCGAATGAGGTTATGTAATATG--AATCTACTGATGCA
CTACTAGAATTTATGGTTATTATGTCTAATGTAATATAAATCTAGTGATGCACTGCTACAATTCATGGTTATTATGTCTT
ATGTTGATTGTTG-ATTTTTTTCTTC---ACATTATCATCATTCAGATTATGTTGGCGTGGTAATGTTTTATTGCTTGAA
TTGTTTAGATTATCTCATCGAACGTA------------------TGGCAAAAGATTCGTTCATGCAGCCTACCTC--A--
TATAGGCTACCAAACACCGTATCAGCACACCATGTCTTGTCTGATGCAGGCTACCAAACACAGTCTTAGCTCAACATGCA
TTAGTACATACATTGCTACCAAACAACTGCAGATGCATGTACTCGTCATGTCTAGATTAAGCATGTCTCAAAGGGGAACA
ACTATACTAGGGTGGGAATAACTACCAAACACACCCT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>chr6D_1028
AGTGCAG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------CAACAACACTTGCCATGCTGAAACACACCCTGACTTGTACAAGACTGTCATGGACCTTATTGTGTT
TGATCAAGATGATCGCTTAGCTGTTCTAGATTATCTCACAAAACATAAGGCAAAAAGCCTCAACTTTGTGAAGATGAATG
ATGAAGTCCGTAAAAGCATCGTTCAAACGTATCTTGAAAGCCAATCCTGATCTTCTTTGAGTTCGTGTTAGTCGGTGCTT
GTCGAGACTACCCCTTTTGTAATGACTATTATAAAG-------CGAATGAGGTTATGTAATATG--AATCTACTGATGCG
GTACTAGAAATTAGGGTTATTATGTCTAATGTAATATGAACCTAGTAATGCAGTGCTACAATCCAGGCTTATTATGTCTT
ATGTTAATTGTTGAATATTTTTCTTC---ACATTATCATCATTCAGATTATGTTGGCATAGTAATGTTTTATTGCTTGAA
TTGTTTAAATTATCTCATCGAACATA------------------TGGCAAAATATCCGTTCATGCAGCATACCTC--A--
TGCAGTCTACCAAACACCGTCTCAGCACACCATGTCTTCTTTGATGCAGGCTACCAAATACAGTCTCAGCTCAGCATGCA
TCAGTACATACATTTCTACCAAACAGCTGCAGTTGCATGTACTCAACATGTCTAGACTAAGCATGTCTCAAAGGGGAACA
ACTATGCTAGGGTGAGAATAGCTACCAAACACACCCT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>SNPs
---SS-SS----SS-SSS-S---SS--S--S-----SS------------------------------------------
--------------------------------------------------------S---------S-------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
-----------------S-----------------------------------------------S--------------
------------------------------------------S-------------------------------------
----------------------------------S---------------------------------S--S-SSSSSSS
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S--------S---------------------------------------------
----------------------------------------------------S---------------------------
-S------------------S-----SS------------------------------------------S---------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S---S--------------S-------------------------------------
-----------------------------------S----------------------------S---------------
---------------S----------------------------------------------------------------
------S-S----------S----------------------------------S--S----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_603
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GGCGGAATAGGTGGACAAGA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
>reverse_2320
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------C
TTGCTGCTGAACGTAGGGA-------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------
