Multiple sequence alignment - TraesCS1D01G231400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G231400 chr1D 100.000 2370 0 0 1 2370 319643544 319641175 0.000000e+00 4377.0
1 TraesCS1D01G231400 chr1D 96.364 55 2 0 1725 1779 241259399 241259453 9.020000e-15 91.6
2 TraesCS1D01G231400 chr1B 86.784 1589 123 36 7 1579 432561303 432559786 0.000000e+00 1690.0
3 TraesCS1D01G231400 chr1B 81.595 163 23 7 118 273 386199643 386199805 6.880000e-26 128.0
4 TraesCS1D01G231400 chr1B 82.716 81 12 2 194 272 170838438 170838358 1.180000e-08 71.3
5 TraesCS1D01G231400 chr1A 89.961 1036 74 12 562 1579 403610662 403611685 0.000000e+00 1310.0
6 TraesCS1D01G231400 chr1A 86.311 599 75 5 1776 2370 145182850 145183445 0.000000e+00 645.0
7 TraesCS1D01G231400 chr1A 94.737 57 1 1 1726 1780 584872010 584871954 1.170000e-13 87.9
8 TraesCS1D01G231400 chr7B 87.081 596 74 3 1777 2370 611998582 611997988 0.000000e+00 671.0
9 TraesCS1D01G231400 chr7B 87.698 569 68 2 1802 2370 684001201 684001767 0.000000e+00 662.0
10 TraesCS1D01G231400 chr7B 73.770 610 128 24 1777 2370 601396191 601395598 6.640000e-51 211.0
11 TraesCS1D01G231400 chr7B 77.157 197 22 16 113 301 44194167 44194348 2.510000e-15 93.5
12 TraesCS1D01G231400 chr7B 78.102 137 13 8 149 282 44194185 44194307 1.180000e-08 71.3
13 TraesCS1D01G231400 chr6D 85.536 560 78 3 1811 2370 153206303 153205747 1.220000e-162 582.0
14 TraesCS1D01G231400 chr4D 84.343 594 91 1 1779 2370 305988268 305988861 4.390000e-162 580.0
15 TraesCS1D01G231400 chr4D 98.113 53 1 0 1725 1777 499482508 499482560 2.510000e-15 93.5
16 TraesCS1D01G231400 chr2A 83.051 472 80 0 1897 2368 324335415 324335886 1.680000e-116 429.0
17 TraesCS1D01G231400 chr2A 87.356 87 9 2 1776 1860 324335327 324335413 5.390000e-17 99.0
18 TraesCS1D01G231400 chr2A 96.364 55 2 0 1725 1779 639969156 639969102 9.020000e-15 91.6
19 TraesCS1D01G231400 chr2A 98.077 52 1 0 1725 1776 779288861 779288912 9.020000e-15 91.6
20 TraesCS1D01G231400 chr3A 90.984 122 9 2 1608 1728 147498045 147497925 1.880000e-36 163.0
21 TraesCS1D01G231400 chr5B 82.857 175 25 5 104 273 398151104 398151278 4.080000e-33 152.0
22 TraesCS1D01G231400 chr7A 88.235 119 13 1 1610 1727 657152438 657152320 8.830000e-30 141.0
23 TraesCS1D01G231400 chr7D 88.136 118 13 1 1612 1728 32812086 32811969 3.180000e-29 139.0
24 TraesCS1D01G231400 chr7D 76.374 182 32 10 97 272 159351616 159351440 1.170000e-13 87.9
25 TraesCS1D01G231400 chr7D 80.488 82 15 1 1777 1857 169462885 169462966 7.070000e-06 62.1
26 TraesCS1D01G231400 chrUn 87.500 120 14 1 1610 1728 352016319 352016438 1.140000e-28 137.0
27 TraesCS1D01G231400 chrUn 88.393 112 13 0 1617 1728 33308338 33308227 4.110000e-28 135.0
28 TraesCS1D01G231400 chr4B 90.722 97 9 0 1632 1728 649357546 649357642 1.910000e-26 130.0
29 TraesCS1D01G231400 chr4B 95.312 64 2 1 1725 1788 535346082 535346144 1.500000e-17 100.0
30 TraesCS1D01G231400 chr6A 96.491 57 2 0 1724 1780 578903968 578904024 6.970000e-16 95.3
31 TraesCS1D01G231400 chr3D 96.429 56 2 0 1725 1780 178072227 178072172 2.510000e-15 93.5
32 TraesCS1D01G231400 chr3D 74.257 202 35 12 97 285 102648581 102648384 4.230000e-08 69.4
33 TraesCS1D01G231400 chr5A 96.364 55 2 0 1725 1779 307705508 307705454 9.020000e-15 91.6
34 TraesCS1D01G231400 chr4A 94.737 57 2 1 1725 1781 191037549 191037604 1.170000e-13 87.9
35 TraesCS1D01G231400 chr3B 77.778 144 22 9 136 272 708229211 708229351 1.950000e-11 80.5
36 TraesCS1D01G231400 chr6B 83.582 67 5 5 487 548 304095495 304095560 9.150000e-05 58.4
37 TraesCS1D01G231400 chr2D 100.000 29 0 0 1829 1857 360376843 360376871 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G231400 chr1D 319641175 319643544 2369 True 4377 4377 100.0000 1 2370 1 chr1D.!!$R1 2369
1 TraesCS1D01G231400 chr1B 432559786 432561303 1517 True 1690 1690 86.7840 7 1579 1 chr1B.!!$R2 1572
2 TraesCS1D01G231400 chr1A 403610662 403611685 1023 False 1310 1310 89.9610 562 1579 1 chr1A.!!$F2 1017
3 TraesCS1D01G231400 chr1A 145182850 145183445 595 False 645 645 86.3110 1776 2370 1 chr1A.!!$F1 594
4 TraesCS1D01G231400 chr7B 611997988 611998582 594 True 671 671 87.0810 1777 2370 1 chr7B.!!$R2 593
5 TraesCS1D01G231400 chr7B 684001201 684001767 566 False 662 662 87.6980 1802 2370 1 chr7B.!!$F1 568
6 TraesCS1D01G231400 chr7B 601395598 601396191 593 True 211 211 73.7700 1777 2370 1 chr7B.!!$R1 593
7 TraesCS1D01G231400 chr6D 153205747 153206303 556 True 582 582 85.5360 1811 2370 1 chr6D.!!$R1 559
8 TraesCS1D01G231400 chr4D 305988268 305988861 593 False 580 580 84.3430 1779 2370 1 chr4D.!!$F1 591
9 TraesCS1D01G231400 chr2A 324335327 324335886 559 False 264 429 85.2035 1776 2368 2 chr2A.!!$F2 592

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
681 687 0.108615 GATGCAGCACTCGTACTGGT 60.109 55.0 0.0 0.0 34.38 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1584 1609 0.034863 GCCCCCAACTATCAACGGAA 60.035 55.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.782533 AAAAGTTCGCTGAGTTTAGTAAAATG 57.217 30.769 0.00 0.00 0.00 2.32
47 48 6.706055 TCGCTGAGTTTAGTAAAATGTCAG 57.294 37.500 18.31 18.31 39.38 3.51
70 71 6.753279 CAGCAAGTTTCAAGAAAAGTTCATCA 59.247 34.615 0.00 0.00 38.23 3.07
126 130 7.678947 ATCATCGAGTTTGAGAAAAGTTCAT 57.321 32.000 0.00 0.00 0.00 2.57
129 133 5.286438 TCGAGTTTGAGAAAAGTTCATCGA 58.714 37.500 0.00 0.00 33.64 3.59
242 248 5.823045 AGTCACAGAATTCGGAAAGAAGTTT 59.177 36.000 12.79 0.00 42.92 2.66
325 331 5.163652 CGTCAAACCAGGAAGAAGAAAAAGT 60.164 40.000 0.00 0.00 0.00 2.66
326 332 6.036470 GTCAAACCAGGAAGAAGAAAAAGTG 58.964 40.000 0.00 0.00 0.00 3.16
334 340 7.704047 CCAGGAAGAAGAAAAAGTGAAAAGAAG 59.296 37.037 0.00 0.00 0.00 2.85
336 342 9.025041 AGGAAGAAGAAAAAGTGAAAAGAAGAA 57.975 29.630 0.00 0.00 0.00 2.52
375 381 9.503399 AGAATAAAAGAACGGAAAGATGTAACT 57.497 29.630 0.00 0.00 0.00 2.24
385 391 5.005394 CGGAAAGATGTAACTATTCACGTGG 59.995 44.000 17.00 1.33 0.00 4.94
397 403 2.671619 ACGTGGGAATTGGTGGCG 60.672 61.111 0.00 0.00 0.00 5.69
404 410 2.759560 AATTGGTGGCGGGATGGC 60.760 61.111 0.00 0.00 45.12 4.40
422 428 3.684908 TGGCTAGTGCTTGCTAATTCAA 58.315 40.909 5.71 0.00 39.59 2.69
425 431 4.101235 GCTAGTGCTTGCTAATTCAAAGC 58.899 43.478 11.00 11.00 37.04 3.51
434 440 5.063180 TGCTAATTCAAAGCAGGATGTTG 57.937 39.130 0.00 0.00 44.78 3.33
450 456 2.485795 TTGCGGGTTTGAGTGGCAC 61.486 57.895 10.29 10.29 32.64 5.01
604 610 3.453222 TGCGATTTGTGCAAACTCG 57.547 47.368 16.97 16.97 39.87 4.18
678 684 1.472201 CCATGATGCAGCACTCGTACT 60.472 52.381 6.89 0.00 0.00 2.73
679 685 1.591619 CATGATGCAGCACTCGTACTG 59.408 52.381 6.89 0.00 36.96 2.74
680 686 0.108662 TGATGCAGCACTCGTACTGG 60.109 55.000 0.00 0.00 34.38 4.00
681 687 0.108615 GATGCAGCACTCGTACTGGT 60.109 55.000 0.00 0.00 34.38 4.00
682 688 1.134367 GATGCAGCACTCGTACTGGTA 59.866 52.381 0.00 0.00 34.38 3.25
683 689 0.242825 TGCAGCACTCGTACTGGTAC 59.757 55.000 0.00 1.18 34.38 3.34
684 690 0.458025 GCAGCACTCGTACTGGTACC 60.458 60.000 4.43 4.43 34.38 3.34
685 691 0.172803 CAGCACTCGTACTGGTACCC 59.827 60.000 10.07 0.00 32.61 3.69
687 693 0.604578 GCACTCGTACTGGTACCCAA 59.395 55.000 10.07 0.00 30.80 4.12
688 694 1.403780 GCACTCGTACTGGTACCCAAG 60.404 57.143 10.07 3.26 30.80 3.61
689 695 2.165167 CACTCGTACTGGTACCCAAGA 58.835 52.381 10.07 1.77 30.80 3.02
715 721 8.011844 TGATATAGTTAAGTCACAGCTCACAT 57.988 34.615 0.00 0.00 0.00 3.21
767 773 4.578516 TGAACGGATGTCAAGAAACATGTT 59.421 37.500 4.92 4.92 39.93 2.71
858 864 0.968405 TCATTGCTCCTTGTTTGGCC 59.032 50.000 0.00 0.00 0.00 5.36
916 922 1.966451 CTGTCCCACCTGAAACCGC 60.966 63.158 0.00 0.00 0.00 5.68
931 937 4.390297 TGAAACCGCAAACCAAAAGAAAAG 59.610 37.500 0.00 0.00 0.00 2.27
978 986 4.382147 GGAAGTGAAGCCTAGAATCGTCTT 60.382 45.833 0.00 0.00 35.12 3.01
1070 1078 2.030628 CCCCGAAACTTTGCAAACGTAT 60.031 45.455 8.05 0.00 0.00 3.06
1082 1090 4.250464 TGCAAACGTATAGGTCCTTTCAG 58.750 43.478 0.00 0.00 0.00 3.02
1099 1107 0.037697 CAGTTCGATCCAACCCGACA 60.038 55.000 0.00 0.00 34.26 4.35
1113 1121 1.009335 CGACACCGAACTCACACGA 60.009 57.895 0.00 0.00 38.22 4.35
1114 1122 0.386858 CGACACCGAACTCACACGAT 60.387 55.000 0.00 0.00 38.22 3.73
1129 1137 2.270923 CACGATGTGAGGGTGTATGTG 58.729 52.381 0.00 0.00 35.23 3.21
1429 1439 1.685302 GCCATGTACAGCAAAACGTG 58.315 50.000 0.33 0.00 33.33 4.49
1440 1450 2.825975 AAAACGTGAACGGGCGTGG 61.826 57.895 7.86 0.00 44.95 4.94
1456 1467 6.209391 ACGGGCGTGGTAACTATATTTACTAT 59.791 38.462 11.46 0.00 33.21 2.12
1474 1485 3.047280 GCGCCATGTCGGACAACA 61.047 61.111 15.72 0.00 36.56 3.33
1477 1488 1.579429 GCCATGTCGGACAACAACC 59.421 57.895 15.72 0.00 36.56 3.77
1508 1519 7.145932 GAAATTGCTTCCTTTAACTCTAGCA 57.854 36.000 0.00 0.00 36.90 3.49
1520 1545 9.654663 CCTTTAACTCTAGCAAATACTTACACT 57.345 33.333 0.00 0.00 0.00 3.55
1586 1611 2.316119 GCACCACGACAAGAACATTC 57.684 50.000 0.00 0.00 0.00 2.67
1587 1612 1.069227 GCACCACGACAAGAACATTCC 60.069 52.381 0.00 0.00 0.00 3.01
1588 1613 1.194547 CACCACGACAAGAACATTCCG 59.805 52.381 0.00 0.00 0.00 4.30
1589 1614 1.202604 ACCACGACAAGAACATTCCGT 60.203 47.619 0.00 0.00 0.00 4.69
1590 1615 1.871039 CCACGACAAGAACATTCCGTT 59.129 47.619 0.00 0.00 41.86 4.44
1591 1616 2.349438 CCACGACAAGAACATTCCGTTG 60.349 50.000 0.00 0.00 38.19 4.10
1592 1617 2.542178 CACGACAAGAACATTCCGTTGA 59.458 45.455 0.00 0.00 38.19 3.18
1593 1618 3.186409 CACGACAAGAACATTCCGTTGAT 59.814 43.478 0.00 0.00 38.19 2.57
1594 1619 4.387559 CACGACAAGAACATTCCGTTGATA 59.612 41.667 0.00 0.00 38.19 2.15
1595 1620 4.625742 ACGACAAGAACATTCCGTTGATAG 59.374 41.667 0.00 0.00 38.19 2.08
1596 1621 4.625742 CGACAAGAACATTCCGTTGATAGT 59.374 41.667 1.79 0.00 38.19 2.12
1597 1622 5.120208 CGACAAGAACATTCCGTTGATAGTT 59.880 40.000 1.79 0.00 38.19 2.24
1598 1623 6.241207 ACAAGAACATTCCGTTGATAGTTG 57.759 37.500 1.79 0.00 38.19 3.16
1599 1624 5.181245 ACAAGAACATTCCGTTGATAGTTGG 59.819 40.000 1.79 0.00 38.19 3.77
1600 1625 4.261801 AGAACATTCCGTTGATAGTTGGG 58.738 43.478 0.00 0.00 38.19 4.12
1601 1626 2.999331 ACATTCCGTTGATAGTTGGGG 58.001 47.619 0.00 0.00 0.00 4.96
1602 1627 2.297701 CATTCCGTTGATAGTTGGGGG 58.702 52.381 0.00 0.00 0.00 5.40
1603 1628 0.034863 TTCCGTTGATAGTTGGGGGC 60.035 55.000 0.00 0.00 0.00 5.80
1604 1629 1.202099 TCCGTTGATAGTTGGGGGCA 61.202 55.000 0.00 0.00 0.00 5.36
1605 1630 0.322997 CCGTTGATAGTTGGGGGCAA 60.323 55.000 0.00 0.00 0.00 4.52
1606 1631 0.808755 CGTTGATAGTTGGGGGCAAC 59.191 55.000 0.00 0.00 36.42 4.17
1607 1632 1.613255 CGTTGATAGTTGGGGGCAACT 60.613 52.381 0.00 0.00 46.05 3.16
1608 1633 2.525368 GTTGATAGTTGGGGGCAACTT 58.475 47.619 0.00 0.00 42.16 2.66
1609 1634 2.897326 GTTGATAGTTGGGGGCAACTTT 59.103 45.455 0.00 0.00 42.16 2.66
1610 1635 4.083565 GTTGATAGTTGGGGGCAACTTTA 58.916 43.478 0.00 0.00 42.16 1.85
1611 1636 4.390129 TGATAGTTGGGGGCAACTTTAA 57.610 40.909 0.00 0.00 42.16 1.52
1612 1637 4.340617 TGATAGTTGGGGGCAACTTTAAG 58.659 43.478 0.00 0.00 42.16 1.85
1613 1638 2.009681 AGTTGGGGGCAACTTTAAGG 57.990 50.000 0.00 0.00 42.16 2.69
1614 1639 0.973632 GTTGGGGGCAACTTTAAGGG 59.026 55.000 0.00 0.00 32.67 3.95
1615 1640 0.834261 TTGGGGGCAACTTTAAGGGC 60.834 55.000 0.00 0.00 0.00 5.19
1616 1641 1.078528 GGGGGCAACTTTAAGGGCT 59.921 57.895 9.91 0.00 0.00 5.19
1617 1642 0.970937 GGGGGCAACTTTAAGGGCTC 60.971 60.000 9.91 6.54 0.00 4.70
1618 1643 0.039764 GGGGCAACTTTAAGGGCTCT 59.960 55.000 9.85 0.00 0.00 4.09
1619 1644 1.550179 GGGGCAACTTTAAGGGCTCTT 60.550 52.381 3.26 3.26 37.03 2.85
1620 1645 2.248248 GGGCAACTTTAAGGGCTCTTT 58.752 47.619 2.94 0.00 34.59 2.52
1621 1646 3.427573 GGGCAACTTTAAGGGCTCTTTA 58.572 45.455 2.94 0.00 34.59 1.85
1622 1647 3.444034 GGGCAACTTTAAGGGCTCTTTAG 59.556 47.826 2.94 5.31 34.59 1.85
1623 1648 4.079970 GGCAACTTTAAGGGCTCTTTAGT 58.920 43.478 2.94 6.03 34.59 2.24
1624 1649 4.523173 GGCAACTTTAAGGGCTCTTTAGTT 59.477 41.667 16.59 16.59 37.24 2.24
1625 1650 5.335740 GGCAACTTTAAGGGCTCTTTAGTTC 60.336 44.000 18.52 14.29 35.94 3.01
1626 1651 5.240844 GCAACTTTAAGGGCTCTTTAGTTCA 59.759 40.000 18.52 0.00 35.94 3.18
1627 1652 6.238925 GCAACTTTAAGGGCTCTTTAGTTCAA 60.239 38.462 18.52 0.00 35.94 2.69
1628 1653 7.683463 GCAACTTTAAGGGCTCTTTAGTTCAAA 60.683 37.037 18.52 6.55 35.94 2.69
1629 1654 7.511959 ACTTTAAGGGCTCTTTAGTTCAAAG 57.488 36.000 2.94 9.78 44.36 2.77
1630 1655 6.490381 ACTTTAAGGGCTCTTTAGTTCAAAGG 59.510 38.462 17.26 3.41 43.37 3.11
1631 1656 4.724279 AAGGGCTCTTTAGTTCAAAGGA 57.276 40.909 0.00 0.00 43.37 3.36
1632 1657 4.724279 AGGGCTCTTTAGTTCAAAGGAA 57.276 40.909 0.00 0.00 43.37 3.36
1633 1658 5.262455 AGGGCTCTTTAGTTCAAAGGAAT 57.738 39.130 0.00 0.00 43.37 3.01
1634 1659 5.645201 AGGGCTCTTTAGTTCAAAGGAATT 58.355 37.500 0.00 0.00 43.37 2.17
1635 1660 6.077993 AGGGCTCTTTAGTTCAAAGGAATTT 58.922 36.000 0.00 0.00 43.37 1.82
1636 1661 6.554982 AGGGCTCTTTAGTTCAAAGGAATTTT 59.445 34.615 0.00 0.00 43.37 1.82
1637 1662 7.728532 AGGGCTCTTTAGTTCAAAGGAATTTTA 59.271 33.333 0.00 0.00 43.37 1.52
1638 1663 8.531982 GGGCTCTTTAGTTCAAAGGAATTTTAT 58.468 33.333 0.00 0.00 43.37 1.40
1693 1718 4.946160 TTTCCTATGATGGTCCTTTGGT 57.054 40.909 0.00 0.00 0.00 3.67
1694 1719 4.946160 TTCCTATGATGGTCCTTTGGTT 57.054 40.909 0.00 0.00 0.00 3.67
1695 1720 4.503714 TCCTATGATGGTCCTTTGGTTC 57.496 45.455 0.00 0.00 0.00 3.62
1696 1721 3.849574 TCCTATGATGGTCCTTTGGTTCA 59.150 43.478 0.00 0.00 0.00 3.18
1697 1722 4.478317 TCCTATGATGGTCCTTTGGTTCAT 59.522 41.667 0.00 0.00 0.00 2.57
1698 1723 5.669904 TCCTATGATGGTCCTTTGGTTCATA 59.330 40.000 0.00 0.00 0.00 2.15
1699 1724 6.000219 CCTATGATGGTCCTTTGGTTCATAG 59.000 44.000 9.65 9.65 40.98 2.23
1700 1725 4.235079 TGATGGTCCTTTGGTTCATAGG 57.765 45.455 0.00 0.00 34.61 2.57
1701 1726 3.849574 TGATGGTCCTTTGGTTCATAGGA 59.150 43.478 3.54 3.54 38.81 2.94
1702 1727 4.478317 TGATGGTCCTTTGGTTCATAGGAT 59.522 41.667 9.61 0.00 41.93 3.24
1703 1728 4.946160 TGGTCCTTTGGTTCATAGGATT 57.054 40.909 9.61 0.00 41.93 3.01
1704 1729 4.599041 TGGTCCTTTGGTTCATAGGATTG 58.401 43.478 9.61 0.00 41.93 2.67
1705 1730 4.290985 TGGTCCTTTGGTTCATAGGATTGA 59.709 41.667 9.61 0.00 41.93 2.57
1706 1731 5.222233 TGGTCCTTTGGTTCATAGGATTGAA 60.222 40.000 9.61 0.00 41.93 2.69
1707 1732 5.893824 GGTCCTTTGGTTCATAGGATTGAAT 59.106 40.000 9.61 0.00 41.93 2.57
1708 1733 6.039829 GGTCCTTTGGTTCATAGGATTGAATC 59.960 42.308 9.61 0.00 41.93 2.52
1757 1782 9.902196 TTTTCTATTCCTACGTTTTCAAAATCC 57.098 29.630 0.00 0.00 0.00 3.01
1758 1783 8.857694 TTCTATTCCTACGTTTTCAAAATCCT 57.142 30.769 0.00 0.00 0.00 3.24
1759 1784 9.947433 TTCTATTCCTACGTTTTCAAAATCCTA 57.053 29.630 0.00 0.00 0.00 2.94
1762 1787 8.801882 ATTCCTACGTTTTCAAAATCCTATGA 57.198 30.769 0.00 0.00 0.00 2.15
1763 1788 8.624367 TTCCTACGTTTTCAAAATCCTATGAA 57.376 30.769 0.00 0.00 33.93 2.57
1764 1789 8.801882 TCCTACGTTTTCAAAATCCTATGAAT 57.198 30.769 0.00 0.00 35.63 2.57
1765 1790 8.889717 TCCTACGTTTTCAAAATCCTATGAATC 58.110 33.333 0.00 0.00 35.63 2.52
1766 1791 8.673711 CCTACGTTTTCAAAATCCTATGAATCA 58.326 33.333 0.00 0.00 35.63 2.57
1769 1794 9.410556 ACGTTTTCAAAATCCTATGAATCAAAG 57.589 29.630 0.00 0.00 35.63 2.77
1770 1795 9.624697 CGTTTTCAAAATCCTATGAATCAAAGA 57.375 29.630 0.00 0.00 35.63 2.52
1773 1798 7.338800 TCAAAATCCTATGAATCAAAGAGGC 57.661 36.000 4.80 0.00 0.00 4.70
1774 1799 6.322201 TCAAAATCCTATGAATCAAAGAGGCC 59.678 38.462 0.00 0.00 0.00 5.19
1775 1800 3.864789 TCCTATGAATCAAAGAGGCCC 57.135 47.619 0.00 0.00 0.00 5.80
1818 1845 5.693104 GGCGGACAAGAATAACGATAACATA 59.307 40.000 0.00 0.00 0.00 2.29
1824 1851 9.731819 GACAAGAATAACGATAACATAGACTGA 57.268 33.333 0.00 0.00 0.00 3.41
1925 1952 5.092554 TGGACTAACAAACAACTGAGACA 57.907 39.130 0.00 0.00 0.00 3.41
1950 1977 1.094785 GTAGCGTGTTAGACCGGGTA 58.905 55.000 6.32 0.00 0.00 3.69
2050 2077 3.969976 CCAACTGATTCTATCCTCAGGGA 59.030 47.826 0.00 0.00 46.81 4.20
2068 2095 1.676014 GGAAGGACTCCATTCGGTGTG 60.676 57.143 0.00 0.00 44.67 3.82
2098 2125 2.734276 TTATTTTGAAACGGCCTGGC 57.266 45.000 11.05 11.05 0.00 4.85
2101 2128 1.460273 TTTTGAAACGGCCTGGCTCC 61.460 55.000 19.68 1.23 0.00 4.70
2125 2152 3.994392 GTCAGAGAGGTTTACGCAAATGA 59.006 43.478 0.00 0.00 0.00 2.57
2196 2223 0.674581 CTGCGGAGTTCTGGATTGCA 60.675 55.000 0.00 0.00 0.00 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.985634 TTCTTGAAACTTGCTGACATTTTAC 57.014 32.000 0.00 0.00 0.00 2.01
42 43 5.643379 ACTTTTCTTGAAACTTGCTGACA 57.357 34.783 0.00 0.00 0.00 3.58
43 44 6.092748 TGAACTTTTCTTGAAACTTGCTGAC 58.907 36.000 0.00 0.00 0.00 3.51
47 48 7.704789 ATGATGAACTTTTCTTGAAACTTGC 57.295 32.000 0.00 0.00 0.00 4.01
99 103 8.405531 TGAACTTTTCTCAAACTCGATGATTTT 58.594 29.630 0.00 0.00 0.00 1.82
100 104 7.930217 TGAACTTTTCTCAAACTCGATGATTT 58.070 30.769 0.00 0.00 0.00 2.17
101 105 7.496529 TGAACTTTTCTCAAACTCGATGATT 57.503 32.000 0.00 0.00 0.00 2.57
108 112 6.532365 ACTCGATGAACTTTTCTCAAACTC 57.468 37.500 0.00 0.00 0.00 3.01
223 229 6.060028 TGACAAACTTCTTTCCGAATTCTG 57.940 37.500 3.52 0.00 0.00 3.02
230 236 6.972328 TCTCAAAATTGACAAACTTCTTTCCG 59.028 34.615 0.00 0.00 32.90 4.30
231 237 8.702163 TTCTCAAAATTGACAAACTTCTTTCC 57.298 30.769 0.00 0.00 32.90 3.13
242 248 9.650539 TTGATGAACTTTTTCTCAAAATTGACA 57.349 25.926 0.00 0.00 31.52 3.58
299 305 3.553828 TCTTCTTCCTGGTTTGACGTT 57.446 42.857 0.00 0.00 0.00 3.99
301 307 4.893424 TTTTCTTCTTCCTGGTTTGACG 57.107 40.909 0.00 0.00 0.00 4.35
309 315 8.462016 TCTTCTTTTCACTTTTTCTTCTTCCTG 58.538 33.333 0.00 0.00 0.00 3.86
311 317 9.639601 TTTCTTCTTTTCACTTTTTCTTCTTCC 57.360 29.630 0.00 0.00 0.00 3.46
345 351 9.067986 ACATCTTTCCGTTCTTTTATTCTTTCT 57.932 29.630 0.00 0.00 0.00 2.52
361 367 5.005394 CCACGTGAATAGTTACATCTTTCCG 59.995 44.000 19.30 0.00 0.00 4.30
363 369 6.103997 TCCCACGTGAATAGTTACATCTTTC 58.896 40.000 19.30 0.00 0.00 2.62
374 380 2.682856 CCACCAATTCCCACGTGAATAG 59.317 50.000 19.30 7.62 33.91 1.73
375 381 2.717390 CCACCAATTCCCACGTGAATA 58.283 47.619 19.30 1.08 33.91 1.75
376 382 1.544724 CCACCAATTCCCACGTGAAT 58.455 50.000 19.30 6.91 36.53 2.57
377 383 1.175983 GCCACCAATTCCCACGTGAA 61.176 55.000 19.30 4.34 0.00 3.18
385 391 2.127232 CCATCCCGCCACCAATTCC 61.127 63.158 0.00 0.00 0.00 3.01
397 403 0.469917 TAGCAAGCACTAGCCATCCC 59.530 55.000 0.00 0.00 43.56 3.85
404 410 5.300969 TGCTTTGAATTAGCAAGCACTAG 57.699 39.130 12.27 0.00 45.05 2.57
422 428 0.827507 AAACCCGCAACATCCTGCTT 60.828 50.000 0.00 0.00 40.33 3.91
425 431 0.523072 CTCAAACCCGCAACATCCTG 59.477 55.000 0.00 0.00 0.00 3.86
430 436 2.485795 GCCACTCAAACCCGCAACA 61.486 57.895 0.00 0.00 0.00 3.33
433 439 2.904866 GTGCCACTCAAACCCGCA 60.905 61.111 0.00 0.00 0.00 5.69
434 440 3.670377 GGTGCCACTCAAACCCGC 61.670 66.667 0.00 0.00 0.00 6.13
490 496 1.065782 GGCCGGCCCATTTACATTTTT 60.066 47.619 36.64 0.00 0.00 1.94
491 497 0.539518 GGCCGGCCCATTTACATTTT 59.460 50.000 36.64 0.00 0.00 1.82
492 498 2.207580 GGCCGGCCCATTTACATTT 58.792 52.632 36.64 0.00 0.00 2.32
544 550 3.183775 CGTATGGCAAACTTATAGGCGTC 59.816 47.826 0.00 0.00 0.00 5.19
680 686 9.694137 GTGACTTAACTATATCATCTTGGGTAC 57.306 37.037 0.00 0.00 0.00 3.34
681 687 9.429109 TGTGACTTAACTATATCATCTTGGGTA 57.571 33.333 0.00 0.00 0.00 3.69
682 688 8.319057 TGTGACTTAACTATATCATCTTGGGT 57.681 34.615 0.00 0.00 0.00 4.51
683 689 7.386299 GCTGTGACTTAACTATATCATCTTGGG 59.614 40.741 0.00 0.00 0.00 4.12
684 690 8.147058 AGCTGTGACTTAACTATATCATCTTGG 58.853 37.037 0.00 0.00 0.00 3.61
685 691 9.190858 GAGCTGTGACTTAACTATATCATCTTG 57.809 37.037 0.00 0.00 0.00 3.02
687 693 8.356657 GTGAGCTGTGACTTAACTATATCATCT 58.643 37.037 0.00 0.00 0.00 2.90
688 694 8.138074 TGTGAGCTGTGACTTAACTATATCATC 58.862 37.037 0.00 0.00 0.00 2.92
689 695 8.011844 TGTGAGCTGTGACTTAACTATATCAT 57.988 34.615 0.00 0.00 0.00 2.45
715 721 7.023414 TGTACGGACAAAATTATGGTTAGCCA 61.023 38.462 0.00 0.00 40.17 4.75
767 773 0.687920 TGTCCGCCACATGTAGGAAA 59.312 50.000 15.66 9.83 34.17 3.13
799 805 4.028993 ACATGTCGGAGGTAAAAATGGT 57.971 40.909 0.00 0.00 0.00 3.55
858 864 2.176798 TGCCAGGTTATTATGGGAAGGG 59.823 50.000 0.00 0.00 37.05 3.95
916 922 6.639563 TCTCCCTTTCTTTTCTTTTGGTTTG 58.360 36.000 0.00 0.00 0.00 2.93
931 937 1.335051 GCGTTGTTTGCTCTCCCTTTC 60.335 52.381 0.00 0.00 0.00 2.62
965 973 3.352652 GACGAACGAAGACGATTCTAGG 58.647 50.000 0.14 0.00 42.66 3.02
978 986 3.887435 CTGATCAGGATCGGACGAACGA 61.887 54.545 15.38 8.44 44.92 3.85
1032 1040 2.281484 GAGGACCTTTGCGCCACA 60.281 61.111 4.18 0.00 0.00 4.17
1070 1078 3.437213 TGGATCGAACTGAAAGGACCTA 58.563 45.455 0.00 0.00 39.30 3.08
1082 1090 1.017701 GGTGTCGGGTTGGATCGAAC 61.018 60.000 11.81 11.81 37.14 3.95
1113 1121 1.985159 ACCACACATACACCCTCACAT 59.015 47.619 0.00 0.00 0.00 3.21
1114 1122 1.071542 CACCACACATACACCCTCACA 59.928 52.381 0.00 0.00 0.00 3.58
1119 1127 0.960364 CCTGCACCACACATACACCC 60.960 60.000 0.00 0.00 0.00 4.61
1120 1128 0.036164 TCCTGCACCACACATACACC 59.964 55.000 0.00 0.00 0.00 4.16
1121 1129 1.442769 CTCCTGCACCACACATACAC 58.557 55.000 0.00 0.00 0.00 2.90
1129 1137 0.251787 AAAATCCCCTCCTGCACCAC 60.252 55.000 0.00 0.00 0.00 4.16
1177 1185 1.546961 TCTCCTCGACCTTCTTCACC 58.453 55.000 0.00 0.00 0.00 4.02
1179 1187 2.171840 CCTTCTCCTCGACCTTCTTCA 58.828 52.381 0.00 0.00 0.00 3.02
1337 1345 2.970974 GCAACCTCCGCTTGAGCAC 61.971 63.158 3.65 0.00 42.21 4.40
1429 1439 2.869233 TATAGTTACCACGCCCGTTC 57.131 50.000 0.00 0.00 0.00 3.95
1440 1450 8.475331 ACATGGCGCATAGTAAATATAGTTAC 57.525 34.615 10.83 13.84 34.72 2.50
1456 1467 3.047280 GTTGTCCGACATGGCGCA 61.047 61.111 17.71 6.25 37.80 6.09
1505 1516 9.946165 GAACAAGTAAAAGTGTAAGTATTTGCT 57.054 29.630 0.00 0.00 30.56 3.91
1506 1517 9.946165 AGAACAAGTAAAAGTGTAAGTATTTGC 57.054 29.630 0.00 0.00 0.00 3.68
1510 1521 8.919661 GCGTAGAACAAGTAAAAGTGTAAGTAT 58.080 33.333 0.00 0.00 0.00 2.12
1511 1522 7.920151 TGCGTAGAACAAGTAAAAGTGTAAGTA 59.080 33.333 0.00 0.00 0.00 2.24
1554 1579 2.050985 GGTGCGCAAAGTCACTGC 60.051 61.111 14.00 0.00 36.41 4.40
1579 1604 3.377172 CCCCAACTATCAACGGAATGTTC 59.623 47.826 0.00 0.00 39.29 3.18
1580 1605 3.352648 CCCCAACTATCAACGGAATGTT 58.647 45.455 0.00 0.00 43.09 2.71
1581 1606 2.356741 CCCCCAACTATCAACGGAATGT 60.357 50.000 0.00 0.00 0.00 2.71
1582 1607 2.297701 CCCCCAACTATCAACGGAATG 58.702 52.381 0.00 0.00 0.00 2.67
1583 1608 1.409661 GCCCCCAACTATCAACGGAAT 60.410 52.381 0.00 0.00 0.00 3.01
1584 1609 0.034863 GCCCCCAACTATCAACGGAA 60.035 55.000 0.00 0.00 0.00 4.30
1585 1610 1.202099 TGCCCCCAACTATCAACGGA 61.202 55.000 0.00 0.00 0.00 4.69
1586 1611 0.322997 TTGCCCCCAACTATCAACGG 60.323 55.000 0.00 0.00 0.00 4.44
1587 1612 0.808755 GTTGCCCCCAACTATCAACG 59.191 55.000 0.00 0.00 46.13 4.10
1596 1621 0.834261 GCCCTTAAAGTTGCCCCCAA 60.834 55.000 0.00 0.00 0.00 4.12
1597 1622 1.229051 GCCCTTAAAGTTGCCCCCA 60.229 57.895 0.00 0.00 0.00 4.96
1598 1623 0.970937 GAGCCCTTAAAGTTGCCCCC 60.971 60.000 0.00 0.00 0.00 5.40
1599 1624 0.039764 AGAGCCCTTAAAGTTGCCCC 59.960 55.000 0.00 0.00 0.00 5.80
1600 1625 1.924731 AAGAGCCCTTAAAGTTGCCC 58.075 50.000 0.00 0.00 0.00 5.36
1601 1626 4.079970 ACTAAAGAGCCCTTAAAGTTGCC 58.920 43.478 0.00 0.00 29.52 4.52
1602 1627 5.240844 TGAACTAAAGAGCCCTTAAAGTTGC 59.759 40.000 11.74 6.21 38.13 4.17
1603 1628 6.877611 TGAACTAAAGAGCCCTTAAAGTTG 57.122 37.500 11.74 0.00 38.13 3.16
1604 1629 7.891498 TTTGAACTAAAGAGCCCTTAAAGTT 57.109 32.000 7.95 7.95 39.46 2.66
1670 1695 5.650283 ACCAAAGGACCATCATAGGAAAAA 58.350 37.500 0.00 0.00 0.00 1.94
1671 1696 5.269554 ACCAAAGGACCATCATAGGAAAA 57.730 39.130 0.00 0.00 0.00 2.29
1672 1697 4.946160 ACCAAAGGACCATCATAGGAAA 57.054 40.909 0.00 0.00 0.00 3.13
1673 1698 4.290985 TGAACCAAAGGACCATCATAGGAA 59.709 41.667 0.00 0.00 0.00 3.36
1674 1699 3.849574 TGAACCAAAGGACCATCATAGGA 59.150 43.478 0.00 0.00 0.00 2.94
1675 1700 4.235079 TGAACCAAAGGACCATCATAGG 57.765 45.455 0.00 0.00 0.00 2.57
1676 1701 6.000219 CCTATGAACCAAAGGACCATCATAG 59.000 44.000 11.70 11.70 42.96 2.23
1677 1702 5.669904 TCCTATGAACCAAAGGACCATCATA 59.330 40.000 0.00 0.00 34.46 2.15
1678 1703 4.478317 TCCTATGAACCAAAGGACCATCAT 59.522 41.667 0.00 0.00 34.46 2.45
1679 1704 3.849574 TCCTATGAACCAAAGGACCATCA 59.150 43.478 0.00 0.00 34.46 3.07
1680 1705 4.503714 TCCTATGAACCAAAGGACCATC 57.496 45.455 0.00 0.00 34.46 3.51
1681 1706 5.044179 TCAATCCTATGAACCAAAGGACCAT 60.044 40.000 0.00 0.00 42.08 3.55
1682 1707 4.290985 TCAATCCTATGAACCAAAGGACCA 59.709 41.667 0.00 0.00 42.08 4.02
1683 1708 4.855340 TCAATCCTATGAACCAAAGGACC 58.145 43.478 0.00 0.00 42.08 4.46
1684 1709 6.039829 GGATTCAATCCTATGAACCAAAGGAC 59.960 42.308 9.43 0.00 46.19 3.85
1685 1710 6.129179 GGATTCAATCCTATGAACCAAAGGA 58.871 40.000 9.43 0.00 46.19 3.36
1686 1711 6.396829 GGATTCAATCCTATGAACCAAAGG 57.603 41.667 9.43 0.00 46.19 3.11
1731 1756 9.902196 GGATTTTGAAAACGTAGGAATAGAAAA 57.098 29.630 0.00 0.00 0.00 2.29
1732 1757 9.292195 AGGATTTTGAAAACGTAGGAATAGAAA 57.708 29.630 0.00 0.00 0.00 2.52
1733 1758 8.857694 AGGATTTTGAAAACGTAGGAATAGAA 57.142 30.769 0.00 0.00 0.00 2.10
1736 1761 9.893634 TCATAGGATTTTGAAAACGTAGGAATA 57.106 29.630 0.00 0.00 0.00 1.75
1737 1762 8.801882 TCATAGGATTTTGAAAACGTAGGAAT 57.198 30.769 0.00 0.00 0.00 3.01
1738 1763 8.624367 TTCATAGGATTTTGAAAACGTAGGAA 57.376 30.769 11.77 11.77 33.08 3.36
1739 1764 8.801882 ATTCATAGGATTTTGAAAACGTAGGA 57.198 30.769 0.00 0.00 35.63 2.94
1740 1765 8.673711 TGATTCATAGGATTTTGAAAACGTAGG 58.326 33.333 0.00 0.00 35.63 3.18
1743 1768 9.410556 CTTTGATTCATAGGATTTTGAAAACGT 57.589 29.630 0.00 0.00 35.63 3.99
1744 1769 9.624697 TCTTTGATTCATAGGATTTTGAAAACG 57.375 29.630 4.57 0.00 35.63 3.60
1747 1772 8.253113 GCCTCTTTGATTCATAGGATTTTGAAA 58.747 33.333 12.17 0.00 35.63 2.69
1748 1773 7.147846 GGCCTCTTTGATTCATAGGATTTTGAA 60.148 37.037 12.17 0.00 36.38 2.69
1749 1774 6.322201 GGCCTCTTTGATTCATAGGATTTTGA 59.678 38.462 12.17 0.00 0.00 2.69
1750 1775 6.462067 GGGCCTCTTTGATTCATAGGATTTTG 60.462 42.308 0.84 0.00 0.00 2.44
1751 1776 5.600069 GGGCCTCTTTGATTCATAGGATTTT 59.400 40.000 0.84 0.00 0.00 1.82
1752 1777 5.103344 AGGGCCTCTTTGATTCATAGGATTT 60.103 40.000 0.00 0.00 0.00 2.17
1753 1778 4.418190 AGGGCCTCTTTGATTCATAGGATT 59.582 41.667 0.00 0.00 0.00 3.01
1754 1779 3.986134 AGGGCCTCTTTGATTCATAGGAT 59.014 43.478 0.00 0.00 0.00 3.24
1755 1780 3.397527 AGGGCCTCTTTGATTCATAGGA 58.602 45.455 0.00 0.85 0.00 2.94
1756 1781 3.872459 AGGGCCTCTTTGATTCATAGG 57.128 47.619 0.00 5.38 0.00 2.57
1757 1782 5.532779 GGTTAAGGGCCTCTTTGATTCATAG 59.467 44.000 6.46 0.00 36.93 2.23
1758 1783 5.193728 AGGTTAAGGGCCTCTTTGATTCATA 59.806 40.000 6.46 0.00 36.93 2.15
1759 1784 4.017130 AGGTTAAGGGCCTCTTTGATTCAT 60.017 41.667 6.46 0.00 36.93 2.57
1760 1785 3.333680 AGGTTAAGGGCCTCTTTGATTCA 59.666 43.478 6.46 0.00 36.93 2.57
1761 1786 3.696548 CAGGTTAAGGGCCTCTTTGATTC 59.303 47.826 6.46 0.00 36.93 2.52
1762 1787 3.333680 TCAGGTTAAGGGCCTCTTTGATT 59.666 43.478 6.46 0.00 36.93 2.57
1763 1788 2.919602 TCAGGTTAAGGGCCTCTTTGAT 59.080 45.455 6.46 0.00 36.93 2.57
1764 1789 2.344592 TCAGGTTAAGGGCCTCTTTGA 58.655 47.619 6.46 4.25 36.93 2.69
1765 1790 2.879103 TCAGGTTAAGGGCCTCTTTG 57.121 50.000 6.46 1.63 36.93 2.77
1766 1791 2.242452 GGATCAGGTTAAGGGCCTCTTT 59.758 50.000 6.46 0.00 36.93 2.52
1767 1792 1.847088 GGATCAGGTTAAGGGCCTCTT 59.153 52.381 6.46 7.24 39.40 2.85
1768 1793 1.512735 GGATCAGGTTAAGGGCCTCT 58.487 55.000 6.46 0.00 33.31 3.69
1769 1794 0.106894 CGGATCAGGTTAAGGGCCTC 59.893 60.000 6.46 0.00 33.31 4.70
1770 1795 1.984288 GCGGATCAGGTTAAGGGCCT 61.984 60.000 0.00 0.00 36.66 5.19
1771 1796 1.526225 GCGGATCAGGTTAAGGGCC 60.526 63.158 0.00 0.00 0.00 5.80
1772 1797 0.533085 GAGCGGATCAGGTTAAGGGC 60.533 60.000 0.00 0.00 0.00 5.19
1773 1798 0.249489 CGAGCGGATCAGGTTAAGGG 60.249 60.000 0.00 0.00 0.00 3.95
1774 1799 0.249489 CCGAGCGGATCAGGTTAAGG 60.249 60.000 2.00 0.41 37.50 2.69
1775 1800 0.249489 CCCGAGCGGATCAGGTTAAG 60.249 60.000 11.05 0.00 37.50 1.85
1818 1845 0.409876 TGGACACCCTAGCTCAGTCT 59.590 55.000 0.00 0.00 0.00 3.24
1824 1851 4.862641 ATTAAACATGGACACCCTAGCT 57.137 40.909 0.00 0.00 0.00 3.32
1914 1941 2.352814 GCTACGGACATGTCTCAGTTGT 60.353 50.000 24.50 15.02 0.00 3.32
1925 1952 1.133790 GGTCTAACACGCTACGGACAT 59.866 52.381 0.00 0.00 0.00 3.06
1963 1990 3.833732 GAGGAAAAAGAACCTCCCACTT 58.166 45.455 0.00 0.00 44.70 3.16
2006 2033 0.036388 GTGGTCGGAGCCAATTCTCA 60.036 55.000 4.54 0.00 40.68 3.27
2030 2057 4.657969 CCTTCCCTGAGGATAGAATCAGTT 59.342 45.833 0.00 0.00 43.54 3.16
2050 2077 0.324943 CCACACCGAATGGAGTCCTT 59.675 55.000 11.33 0.19 39.87 3.36
2068 2095 7.699391 GGCCGTTTCAAAATAAAATCTACTACC 59.301 37.037 0.00 0.00 0.00 3.18
2098 2125 2.416162 GCGTAAACCTCTCTGACTGGAG 60.416 54.545 0.00 0.00 34.88 3.86
2101 2128 2.724977 TGCGTAAACCTCTCTGACTG 57.275 50.000 0.00 0.00 0.00 3.51
2110 2137 4.250464 TCGAAGATCATTTGCGTAAACCT 58.750 39.130 0.00 0.00 0.00 3.50
2125 2152 1.115467 AGCTCCCAACGATCGAAGAT 58.885 50.000 24.34 6.64 45.12 2.40
2178 2205 0.250684 TTGCAATCCAGAACTCCGCA 60.251 50.000 0.00 0.00 0.00 5.69
2266 2293 2.070783 CTCGTCGACTATCCTAGCTCC 58.929 57.143 14.70 0.00 0.00 4.70
2315 2342 1.000396 CCTTCCAAGAAGGGCCAGG 60.000 63.158 14.45 0.00 38.24 4.45
2317 2344 1.065410 TCACCTTCCAAGAAGGGCCA 61.065 55.000 23.63 7.49 41.71 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.