>input_sequence_82382
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-----------------------------------------------ATGGCCCGGGTTGCGTCCAGCTGTGCCGCCCTT
GTGGCGCAAAGGTCCTCCCCGAAACTTTGCAAACGTATAGGTCCTTTCAGTTCGATCCAACCCGACACCGAACTCACACG
ATGTGAGGGTGTATGTGTGGTGCAGGAGGGGATTTTCCGCCGCGATAACCGCAATCGATGTGTCGGTGAAGAAGGTCGAG
GAGAAGGCGGTGAAGCTGGGTATGGCGGCGACGGAGGACACGACGGAGGACAAGACGGCGTTCTGGGAGCCGGACCCCAA
GACCGGCGACTACCGGCCGGTGACCGGCACCAAGGAGGTGGATCCGGCCGACCTGCGCGCCGAGGTGCTCAAGCGGAGGT
TGCTGCAGCAGCAGTGA---------------------------------------------------------------
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>chr1D_1_TraesCS1D01G231400
TTTTTTATCAATTTTTAAAAAAGTTCGCTGAGTTTAGTAAAATGTCAGCAAGTTTCAAGAAAAGTTCATCATTTTTTTTA
AAAAACAT---TTATTTCTAAAAAAATCATCGAGTTTGAGAAAAGTTCATCGAGTTTAAAAAAATTCATCAATTTTGAAA
AAAATTCATGAATTTTGAAAAATGTTCATTGAATTTGAAAAAAGT--CATCAATTTTGAAAAAAGTCACAGAATTCGGAA
AGAAGTTTGTCAATTTTGAGAAAAAGTTCATCAATTTTTAAGAAAAAAAATCAATAATTAAAAAAACGTCAAACCAGGAA
GAAGAAAAAGTGAAAAGAAGAAATAAAAGTAGAAAGAATAAAAGAACGGAAAGATGTAACTATTCACGTGGGAATTGGTG
GCGGGATGGCTAGTGCTTGCTAATTCAAAGCAGGATGTTGCGGGTTTGAGTGGCACCAGAGCCTTGTTTTTTCCGCGTTT
TGAAAAAAAGAAGAAAAAAATGTAAATGGGCCGGCCCAGCACGGAGGGCGGTATGCGCCCGTTTGCGAAGACGCCTATAA
GTTTGCCATACGGCGATACGTTTGGCTGTTTTGCGATTTGTGCAAACTCGCAGCAACATGCAGCACATGGAAGATTGACA
TATGCCGTGAGCCTTGTCACGCTCCATGATGCAGCACTCGTACTGGTACCCAAGATGATATAGTTAAGTCACAGCTCACA
TGGCTAACCATAATTTTGTCCGTACATAATGAACGGATGTCAAGAAACATGTTTTCCTACATGTGGCGGACAGAGAGGCT
GCCTACCATTTTTACCTCCGACATGTTCTAACAGCCATACATCCTCATTGCTCCTTGTTTGGCCCCTTCCCATAATAACC
TGGCAATGGCATTTTCTGTTCCTCTGTCCCACCTGAAACCGCAAACCAAAAGAAAAGAAAGGGAGAGCAAACAA--CGCG
ACGGAAGTGAAGCCTAGAATCGTCTTCGTTCGTCCGATCCTGATCAGATGGCCCGGGTTGCGTCCAGCTGTGCCGCCCTT
GTGGCGCAAAGGTCCTCCCCGAAACTTTGCAAACGTATAGGTCCTTTCAGTTCGATCCAACCCGACACCGAACTCACACG
ATGTGAGGGTGTATGTGTGGTGCAGGAGGGGATTTTCCGCCGCGATAACCGCAATCGATGTGTCGGTGAAGAAGGTCGAG
GAGAAGGCGGTGAAGCTGGGTATGGCGGCGACGGAGGACACGACGGAGGACAAGACGGCGTTCTGGGAGCCGGACCCCAA
GACCGGCGACTACCGGCCGGTGACCGGCACCAAGGAGGTGGATCCGGCCGACCTGCGCGCCGAGGTGCTCAAGCGGAGGT
TGCTGCAGCAGCAGTGATGCGCGTGCTGCAAACACGCTGCCGGCCCA--GGTTCATACCGCCATGTACAGCAAAACGTGA
ACGGGCGTGGT-AACTATATTTACTATGCGCCATGTCGGACAACAACCTGTCAGGAAATTGCTTCCTTTAACTCTAGCAA
AT--------------ACTTACACTTTTACTTGTTCTACGCAAATCGTCTAAAATTTCGCAGTGACTTTGCGCACCACGA
CAAGAACATTCCGTTGATAGTTGGGGGCAACTTTAAGGGCTCTTTAGTTCAAAGGAATTTTATAGGATTTCTAAAGGATT
GAAATCCTTAAGATTTTTTCCTATGATGGTCCTTTGGTTCATAGGATTGAATCCCGTAGGAATTTTTTCTATACTTTTTC
TATTCCTACGTTTTCAAAATCCTATGAATCAAAGAGGCCCTTAACCTGATCCGCTC--GGGGCGGACAAGAATAACGATA
ACATAGACTGAGCTAGGGTGTCCATGTTTAATAATGCCATCGCGGCTGCCGCTCTCCGCGAAGCTGCACGGACAGGCGCC
AGGTTCACATGGACTAACAAACAACTGAGACATGTCCGTAGCGTGTTAGACCGGGTATTCTTCACCCTAAAGTGGGAGGT
TCTTTTTCCTCTCTGTTCTCTGTTGGCGGAGATGAGAATTGGCTCCGACCACGTCCAACTGATTCTATCCTCAGGGAAGG
ACTCCATTCGGTGTGGTAGTAGATTTTATTTTGAAACGGCCTGGCTCCAGTCAGAGAGGTTTACGCAAATGATCTTCGAT
CGTTGGGAGCTGATTACTTCGCAGCTAGGGCGCCAACGCGGTCCTGCGGAGTTCTGGATTGCAACGGCCAGCGTCCTACG
GGCGTTTTTACGTGGGTGGGGGGCCAACCACGGGAGTGAATCCAAGAGGGAGGGAGCTAGGATAGTCGACGAGATTGCGT
CGCTAGACGCCCAGGCTGACGCCTGGCCCTTCTTGGAAGGTGAATGGGCCCACAGATATGCCCTAGAAAACCAAGT
>chr1B_7
ATCAA-------TTTTAAAAAAGTTCGCTGAGTTTAATAAAAGTTCAACAAGTTTCAAGAAAAGTTCATCTTTTTTATAA
AAAAACATTGATTTTTTCTAAAT--ATCATCAAGTTTGAGAAAAGTTCAGCGGGTTTAAAAAAAG---------------
----TTCATTAATTTTGAAAAAAGTTCATCGAATTTGAAGAAAAAACCATCAATTTTGAAAAAAGTCATAGAATTT-GAA
AGAAGTTCGTCAATTTTGAGAAAAAGTTTATCAATTTTGAAG-AAAAAAATCAAGAATTAAAAATA-GTCAAACTAAGAA
GAAGAAAAAGGAAAAAGAAAAGATAAAACTGGAAAGAATAAAAGAAGGAAAAGATGTAA----TCACGTGAGAATTGGTG
GCCGGATGGTTAGTGCTTGCTAATTCAGAGAAGGAGGTCACGGGTTTGAGTGGCAGCAGAGCCTTGTTTTTTGTGTGTTT
TTAAAAAAGAAAAAA---AATGTAAATGGGCCGGCCCAGCGTGGAGGGGGGTATGCGCTCG-TTGCGAAAACACTTATAA
ATTTGCCATACGGCGATACGTTTGGCTGTTTTGCGATTTGTGCAAACTCCCAGCAACATGCAGCACATGGAAGATTGACA
TATGCCGTGAGCCTTGTCACGCTCCATGATGCAGCACTCGTACACTAGATGAT--TGATATAGTTAAGTCACAGCTCACT
AGGCTAACCATAATTTGCTCCGCACATAATGAACGGATATCAACAAACATGTGTTCCTACATGTGGTGGACAGAGAGGCT
GACTCCCATTTTTACCTCCGACATGTTCTAACAGCCATACATCCTCATTGCTCCTTGTTTGGCTCCTTCCCATAATAACC
TGGCAATGGCATTTTATGTTTCTCTGTCCCACCGGAAACCGAAAACCAGAAGA-----AAGGGAGGGCAAACAA--CGCG
AAAGG-----------GAATCGCCTCCGTTCGTCCGATCCCGATCAGATGGCACGGGTTGTGTCCAGCTGTGCCGCCCTC
GTGGCGCAAAGGTCTTCCCCAAAACTGTGCAAACGTACATGTCCTTTCATTTCGATCCAACCTGACGCCGAACTCACA--
--------------------TGCAGGAGGGGATTTTCCGCCGCGATAACCGCCATCGATGTGTCAGCGAAGAAGGTCGAG
GAGAAGGCGGTGAAGTTGGGTATGGCGGCGACAGAGGACACGACGAAGGACAAGACGGCGTTCTGGGAGCCGGACCCCAA
GACCGGCGACTACCGGCCGGTGACCAGCACCAAGGAGGTGGATCCGGCCGACCTGCGCGCAGAGATGCTCAAGCGGAGGT
TGCTGCAGCAGCAATGATGCGCGTGCTGCAAACACGCTACCGGCCCATAGGTTCATACCGTCATGTACAACAAAACGTTA
ACGGGCGTGCTAAACTATATTTACTAGGTGCCATGTCGGACAACGACTTGTCAGGAAATTGCTTCCTGTAA----GTATG
TAAGTCTTCAACAGACACTTACACATTTACTTGTTCTACGCAAATCGTCCAAAATTTCCCAGTGGTTTCGCACACCACGA
CAA-----------------------------------------------------------------------------
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>chr1A_562
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------CATCCGGCGATACGTTTGGCTGTTTTGCGATTTGTGCAAACTCCCAGCAACACGCAGCACATGGAAGATTGACA
GATGCCGTGAGCCTTGTCACGCTCCATGATGCATCACTCGTACCCAAGATGAT--CGATAT-----AGTCACAGCTCACA
AGGCTAACCATAATTTTGTCCGTACATAATGAACGGATGTCAAGAAACATGTGTTCCTACATGTGGTGGACAGAGAGGCT
GCCTCCCGTTTTCACCTCCGACATGTTCTAAGAGCCATACATCCTCATTGCTCCTTGTTTGGCTCCTTCCCATAATAACC
TGGCAATGGCATTTTCTGTTCCTCTGTCCCATCTGAAACCGAAAACCAAAAGAAAACAAAGGGAGAGCAAACAAGGCGAG
ACGGAAGTGAAGGCTAGAATCGTCTCCGTTCATCCGATCCTGATCAGATGGCCCGGGTTGCGTCCAGCTGTGCCACCCTC
GTGGCGCAAAGGTCCTCCC-GAAACTTTGCAAACGTACAGATCATATCATTTCGATCCAACCCGAGGTTGAACTGATACG
C-GTGACAATGTATGTATGGTGCAGGAGGGGATATTCCTCCGCGATAACCGCCATCGGAGTGTCCGCGAAGAAGGTTGAG
GAGAAGGCGGTGAAGCTGGGCACGGCGGCGACGGAGGACACCACGGAGGACAAGACGGCGTTCTGGAAGCCGGACCCCAA
GACCGGCGACTACCGGCCCATGACCGGCACCAAAGAAGTGGATCCGGCCGACCTGCGCGCCGAGATGCTCAACCAGAGGT
TGCTGCAGCAGCAGTGATGCGCGTGCTGCAAACACGCTGCCGGCCCA--GGCTCATACCGCCATGTACAGCAAAACGTTG
ACGGGCGTGCTAAACTATATTTACTAGGCGCCATGTCGGACAACGACTTGTCGGGAAATTGCTTCCTGTATCACTGTATG
TAAGTCTTTAGCAAACACTTACACATTTGCGTGTTCTACGCAAATCGTCTAAAATTTC--AGTGACTTTGCGCATCATGA
CAA-----------------------------------------------------------------------------
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>chr1A_1776
CTTCAA--------------------------------------------------------------------------
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--------------------------------------------CCTGATCCGCTT-GGGGGCGGACAAGAACAACAATA
ACATTGACTATGCTACGGTGTCCACATTTAATAATGCCATCACGACTGTCGCTCTCCGCAAAGCTGCACTGATAGGCGCC
AGGTTCACATGGACTAACAAGCAACTAAGACCTGTTCGTAGCATGTTAGACCGGGTCTTCTTCACCCCAGAGTGGGAGGT
TGTTCTTCCTCTCTGTTCTTTGGTGGCGGAGACAAGAATTGGATCCGACCACGTCCGACTGATTCTTACCTCAGGGGAGG
ACTCCATTCGGTGTAGTAGTAGATTTTATTTTGAAACGGCCTGGTTTGAGTCAGAGGGGTTTACGCAAATGGTCTTCGAT
CGCTAGGAGTTGATTATTTCGCAGCTAGGGCATCAACGCGGTTTGGCGGAGTTCTGGACTGCCGCGGCCGGCGCTCTGCG
AGCGTTCCTTTAT-GGGTGGGGGCCAACCATGGGAGTGAATCCAAGAGGGAGAGAGCTAGGATAGTCGACGAGATTGTGT
CGCTTGATGCCCAAACGGTTGTCAAGCCATTCTCGGAAGGTGAATGGGCTCACGGACATGCCCTAGAAAACCAAGT
>chr2A_1776
CTTCAA--------------------------------------------------------------------------
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--------------------------------------------TCTGATCCACTC-ATGGGCGGACAAGAACAACAATA
ACATCGACTGGGTTAGGGTGTCCATGTTTAATAATGCCATCCCGGCC---------------------------------
--GTTCACATGGACGAACAAGCAACTGAGACCTGTTTGTAGCGTGTTAGACCGGGTCTTCTTCAGCCCAGAGTGGGAGGT
TATTTTTCCTCTCTGTTCTTTGATAGCGGAGACAATAATTGCCCACAACCACGTCCCATTGATTCTTTCGTCAAGGGAGG
ACTCCATTCGGCATATTAGTAGATTTTATTTCGAAACGTCCTGGTTTGAGTCAGAGGGGCTTTCGCAAGTGGTCTTCGGT
CATTGGGAGAAGATTATTTTGCAGCTAGGGGGGCAACGCGGTCCGGCGGAGTTCTAGACTGCCATGGCCGGCGCTCTGCG
AGCGTTCCTACATGGGTGTGGGGCCAACCACGGGAGTGAATCCAAGAGGGAGAGAGCTAGGATAGTCAACAAGATCCCGT
CGCTTGATGCCCGGGCGGATGTCATGCAATTCTCGGAAGGTGAATGCGCTCACAGATATGCCCTAGAAAACCAA--
>chr7B_1777
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----------------------------------------TTAACCTGATCTGTTC-AGCGGCGGACAAGAACAACGGTA
ACATCGACTGGGCTAGGCTGTCCATGTTTAGTAATACCATCGCGGTTGCTGCTCTCCAAGAAGCTGCGTGGACAGGCGTC
AGGTTCACATGGACCAACAAGCAACTGATGACTGTCCGTAGCGTGCTAGACCGGGTCTTCTTCACCCCTGAGTGGGAGGT
TATTTTTCCTCTCTGCTCACTGTTGGCAGAGACTAGAATTGGCTCTGATCATGTCCCACTGGTTCTCTCCTCAAGGGAGG
ACTCCATTCGGTGTAGTAGTAGATTTTACTTTGAAACGGCCTGGTTCGAGTCACAGGGATTTACACAAACGGTTTTCGAT
TGCTGGGAGTTGATTATTTTGCAGCTAGGGCACCAACGCGGTCCGGCGGAGTTCTGGATTGCCGCGGCTGGCGTCCTACG
GGAATTTTTACGTGGGTGGGGGGCCAACCACGGGAGTGAATCCAAGAGGGAGAGAGCTATAATAGTCGCCGAGATTGCGT
CGCTCGATGCCCAGGCCGACGTCAAGCCCTTCTCGGAAGGCGAATGGGCCCACAGATATGCCCTAGAAAACCAAGT
>chr7B_1777
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----------------------------------------TTAACTTGATCCGTTC-AGGTGCGGACAAGAACAATGCTA
ACATTGACTGGACTAGGGTGTCCATGTTTAATAATGCCATTGCGGCGGCGGCACTGCGTGAGGCTACTAGGACTGGGGCC
AGGTTCACTAGGACTAACAAGCAGTTGCAGCCGGTGCGAAGCATGCTTGATCCTGTTTTCTTCACTCCTGAGTGGGAGGT
GCTTTTTCCCCTGTGCATGCTTGTCGCTGAAACCCTTATCGGTTCGGATCATGTGCCGCTGATTTTCTCCTCAAGGGAGG
ATTACATCAGACATAGTCGTAGATTTTACTTGGAAACGGCATGGTTCGAATCCGAGGGGTTTGCGCAAATGGTCGTCAAC
CGCTGGCTGACGATCCGCGCCCAACTTGGGCCGCAACGCGAACTGACAGAGTGCTGGAATGCGTCGGTGGCCAAGCTTCA
AACGTTTCTTCGA-GGGTGGGAGCTAACCACGGCAGCAAATCCAAACGGGATCACGCTAGGATAGTCGATGAAATTGCCT
CACTGGATGCGGAGGCTGATCGCCGCCCCTTCTTAGAGGGAGAATGGGCGCATAGATATTCCCTAGAAAACCAAGT
>chr4D_1779
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------------------------------------------AACCTGATCCGCTCGAGGGGAGGACAAGAATAACAATA
ACATTGACTGGACTAGGGTATCCATGTTTAATAATGCCATTGCAGCTGCTGCCCTCCGTGAAGCCGCATGGACAGGTGCC
AGGTTTACTTGGACTAACATGGAACTGAGACCTGTCCGGAGCGTGTTAGACTGGGTCTTCTTCACCCCAGAGTGGGAGGT
TCTTTTTCCTCTCTGTTCTCTGGTGGCGGAGACGAGAATTGGCTCCGATCACGTCCCACTAATTCTATCCTCAGGGGAGG
ATTTCATTCGGCGTAGTAGTAGATTCTACTTCGAAACGGCCTGGTTTGAGGCTGAGGGGTTCTCTCAAATGGTTTTCGAT
CGCTGGGAGCTGATTTCATCGTAGTTAGGGCGACAACACGGTCCGGTGGAGTTCTTGACTGCCATGGCTAGCGCACTGCG
ATCTTTCCTCCGTGGGTGGGGGGCCAACCATGGAAGTGAATCCAAGAGGGAGAGAGCTAGGATAGTGGACGAGATCGCGT
CGCTCGACGCCCATGCGGATGTCAGGCCATTCTCGGAAGGTGAATGGGCTCATAGATACACCCTGGAAAATCAAGT
>chr7B_1802
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-------------------------------------------------------------------AAGAACAACGGTA
ACATCGACTGGGCTAGGGTGTCCATGTTTAATAATGCCATCGCGGTTGCTGCTCTCCGCGAAGCTGCACGGACAGGCGCC
AGGTTCACATGGACCAACAAGCAACTGTGGCCTGTCACTAGAATGCTAGACCGGGTCTTCTAAACCTTATAGTGGGAGGT
TCTTTTCCCTCTCTGCTCACTGTTGGCGGAGACTAGAATTGGCTCTGACCATGTCCCACTGATTCTCTCCTCAGAGGAGG
ACTCCATTCGGCGTAGTAGTAGATTTTATTTCGAAACGGCCTAGTTTGAGTCAGAGGGATTTATGCAAATGGTCTTCGAT
CGTTGGGAGCTGATTATTTCGTAGCTAGGGCGCCAACGTGTTCTAGCGGAGTTCTGGACTACTGCTGCCGGTGTCCTACG
GGCATTTTTACGTGGGTGGGGGGCCAACCACGGGAGTGAGTCCAAGAGGGAGAGAGCTAGGATAGTCGATGAGATTGCAT
CGCTCGACGCCCAGGCCGACATCAGGCCCTTCTCGGAAGGTGAATGGGCCCACATATATGCCCTAAAACCAAGT--
>chr6D_1811
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----------------------------------------------------------------------------GATA
ACATCGACTGGGTTAGGGTGTCCATGTTTAATAATGCCATCGCAGCTGCCGCTCTCCGTGAAGCTGCTCGAAAAGGGGCC
AGGTTTACGTGGACTAACAAGCAACTGAGATTTGTCCGCAGCATTTTAGACCGGGTCTTCTTCACCCCAGAGTGGGAGGT
TCTTTTTCCTCTCTGTTCTCTGGTGGCTGAGACGAGAATTGGCTCTGACCACGTCCCATTGATTCTATCCTCAG-GGAGG
ACTCCATTCGGCATAGTAGTAGATTTTACTTCCAAAAGGCCTGGTTTGAGTCAGAGGGGTTTGCTCAAATGGTCTTCAAT
CGCTGGGAGTTGATCATTTCGCAGCTAGGGCGGCAACGCGCCCCGGCGGAGTTCTGGACTGCCGCGGCCGGCGCCCTGCG
CGCGCTCCTTCGTGGGTGGGGGCGAT--CATGGGAGTGAATCCAAGAGGGAGAGAGCTAGGATAGTCGACGAGATCGCGT
CGCTCGACGTCCAGGCGGATGTTAGGCCATTCTCAGAAGGTGAATGGGCCCAGAGATACGCTCTAGAAAACCAAGT
>SNPs
S--SSSSSSSSS------------------------S-----SS---S----------------------S-----S-S-
-------------S--------SSS------S-----------------S--S-----------SSSSSSSSSSSSSSSS
SSSS-----S------------S------S---------S---SS-----------------------S------SS---
-------S--------------------S---------S---S-----------S---------S-S-------S-S---
----------SS-------S-S------S-S---------------S-S----------SSSS-------S---------
--S------S-----------------S--S----S--SS---------------S----------------SS-S----
-S------SS--S--SSS----------------------SS------S---------S--S-------S--S-S-----
S------------------------------------------------S------------------------------
-------------------------------------------SSSSSSSS-SSS-------------------------
S---------------------------------------------------S-------------S-------------
----S----------------------------------------------------------S----------------
-----------------------------------------S--------------S-----------------------
------------S------------S-----------------------------------------------------S
-------------------------------------S-----------S----------------S-------------
SS----SSS-------S-----------------------------------S-----------S-S-------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
------------------------------------------------------------------------------S-
---------S----------------S-----------------S--S-------------------S----S--SSSSS
SS----------------------S---------------------------------S---------------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------
----S-----S---------------------------------------------------------------------
--------------------S----------S------------------------S------------S----------
--------------------------------S-----------------------S-------------------S---
--------------S-----------------------------S--S--------S--------------S--------
--------------------------------------------S-----------------S-----------------
----------------------------------------------------S---------------------------
----S----------------S-S----------------------------------------------------
>forward_687
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---------------------------GATGCAGCACTCGTACTGGT---------------------------------
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>reverse_1609
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--------TTCCGTTGATAGTTGGGGGC----------------------------------------------------
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