Multiple sequence alignment - TraesCS1D01G227500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G227500 chr1D 100.000 4790 0 0 1 4790 315971132 315975921 0.000000e+00 8846.0
1 TraesCS1D01G227500 chr1A 95.473 3026 109 15 900 3915 396421543 396424550 0.000000e+00 4804.0
2 TraesCS1D01G227500 chr1A 92.188 896 44 15 1 892 396408074 396408947 0.000000e+00 1243.0
3 TraesCS1D01G227500 chr1A 87.322 773 54 16 3996 4741 396424549 396425304 0.000000e+00 845.0
4 TraesCS1D01G227500 chr1B 96.552 1711 49 4 2213 3915 428064192 428065900 0.000000e+00 2824.0
5 TraesCS1D01G227500 chr1B 91.823 1871 99 31 370 2210 428062107 428063953 0.000000e+00 2558.0
6 TraesCS1D01G227500 chr1B 86.469 776 63 17 3996 4742 428065899 428066661 0.000000e+00 813.0
7 TraesCS1D01G227500 chr5D 95.455 88 3 1 3912 3998 109535538 109535625 6.460000e-29 139.0
8 TraesCS1D01G227500 chr5D 95.455 88 3 1 3912 3998 112842924 112843011 6.460000e-29 139.0
9 TraesCS1D01G227500 chr5D 91.089 101 7 2 3902 4000 373214669 373214569 8.360000e-28 135.0
10 TraesCS1D01G227500 chr7D 93.478 92 5 1 3912 4002 185552784 185552875 8.360000e-28 135.0
11 TraesCS1D01G227500 chr4A 94.382 89 4 1 3910 3997 556768043 556767955 8.360000e-28 135.0
12 TraesCS1D01G227500 chr2B 94.382 89 4 1 3910 3997 95449712 95449800 8.360000e-28 135.0
13 TraesCS1D01G227500 chrUn 92.553 94 6 1 3912 4004 100223737 100223830 3.010000e-27 134.0
14 TraesCS1D01G227500 chr4D 92.553 94 6 1 3905 3997 236940118 236940211 3.010000e-27 134.0
15 TraesCS1D01G227500 chr3D 91.089 101 6 3 3906 4005 157035647 157035745 3.010000e-27 134.0
16 TraesCS1D01G227500 chr7B 95.918 49 0 1 1987 2033 543192835 543192883 1.430000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G227500 chr1D 315971132 315975921 4789 False 8846.0 8846 100.000000 1 4790 1 chr1D.!!$F1 4789
1 TraesCS1D01G227500 chr1A 396421543 396425304 3761 False 2824.5 4804 91.397500 900 4741 2 chr1A.!!$F2 3841
2 TraesCS1D01G227500 chr1A 396408074 396408947 873 False 1243.0 1243 92.188000 1 892 1 chr1A.!!$F1 891
3 TraesCS1D01G227500 chr1B 428062107 428066661 4554 False 2065.0 2824 91.614667 370 4742 3 chr1B.!!$F1 4372

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 1.762370 CCAAAACCACCTTCCAAGCTT 59.238 47.619 0.00 0.00 0.00 3.74 F
1127 1164 0.109873 CAAAGCGACCTCGAGTACGT 60.110 55.000 22.45 10.61 43.02 3.57 F
1736 1778 0.036388 GATCAACGGCTTGGTCCAGA 60.036 55.000 0.00 0.00 32.00 3.86 F
1820 1865 1.414550 CCATTTCCGTGGGTTGGTTTT 59.585 47.619 0.00 0.00 35.55 2.43 F
2686 2979 2.102252 TGAAAAGAAGCCGTTGCCATTT 59.898 40.909 0.00 0.00 38.69 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1405 1442 0.764890 GCAGACCATATGGCCAGGTA 59.235 55.000 22.18 1.46 39.32 3.08 R
2672 2965 3.057806 GTGTACTAAAATGGCAACGGCTT 60.058 43.478 0.00 0.00 40.87 4.35 R
3714 4007 0.700564 ATTTGCCTGCTCCTCTCCAA 59.299 50.000 0.00 0.00 0.00 3.53 R
3755 4048 3.496884 TGTCCGTCTTGTAGAATGTTTGC 59.503 43.478 0.00 0.00 0.00 3.68 R
4660 4986 0.598065 AAAAGCACTTCACCGGCATC 59.402 50.000 0.00 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.762370 CCAAAACCACCTTCCAAGCTT 59.238 47.619 0.00 0.00 0.00 3.74
28 29 2.820197 CACCTTCCAAGCTTTTAGGGAC 59.180 50.000 17.93 0.00 0.00 4.46
34 35 3.756434 TCCAAGCTTTTAGGGACGATTTG 59.244 43.478 0.00 0.00 0.00 2.32
77 78 5.167845 GGGCGAAATACATGATTTTTGTGT 58.832 37.500 0.00 0.00 37.90 3.72
98 99 8.463930 TGTGTCTCTTTGGATTGTAAGAATTT 57.536 30.769 0.00 0.00 30.55 1.82
249 251 7.930865 CACAAACCTCATTTTAATTTTCCTCCA 59.069 33.333 0.00 0.00 0.00 3.86
252 254 8.491045 AACCTCATTTTAATTTTCCTCCAAGA 57.509 30.769 0.00 0.00 0.00 3.02
269 271 4.080582 TCCAAGAAGTCCAAGTCACTTTCA 60.081 41.667 0.00 0.00 34.10 2.69
270 272 4.823989 CCAAGAAGTCCAAGTCACTTTCAT 59.176 41.667 0.00 0.00 34.10 2.57
305 307 6.150332 TCTACCCCATCTCATCAATCCTTTA 58.850 40.000 0.00 0.00 0.00 1.85
312 314 8.921205 CCCATCTCATCAATCCTTTAAAATTCT 58.079 33.333 0.00 0.00 0.00 2.40
317 319 8.761575 TCATCAATCCTTTAAAATTCTTGTGC 57.238 30.769 0.00 0.00 0.00 4.57
324 326 9.643693 ATCCTTTAAAATTCTTGTGCACTAATG 57.356 29.630 19.41 7.59 0.00 1.90
391 393 4.119442 TGACATCTTAACCCTACGCTTC 57.881 45.455 0.00 0.00 0.00 3.86
448 450 3.694566 CCAAATAGGCCCTTACAGTTGAC 59.305 47.826 0.00 0.00 0.00 3.18
622 627 6.314784 AGAAATGCGAAAAGACGGAAAATAG 58.685 36.000 0.00 0.00 37.15 1.73
634 639 9.774413 AAAGACGGAAAATAGAGAAGTAAAAGA 57.226 29.630 0.00 0.00 0.00 2.52
942 966 1.826921 GATCGTCCTACTGGGCCGA 60.827 63.158 0.00 0.00 39.83 5.54
1005 1039 2.373707 GCTGGTCTCTCCCATGGCT 61.374 63.158 6.09 0.00 33.00 4.75
1059 1096 4.360405 CCCCACCGTTTCCCCCTG 62.360 72.222 0.00 0.00 0.00 4.45
1117 1154 2.434359 CCTCCGACCAAAGCGACC 60.434 66.667 0.00 0.00 0.00 4.79
1127 1164 0.109873 CAAAGCGACCTCGAGTACGT 60.110 55.000 22.45 10.61 43.02 3.57
1542 1579 3.319405 AGAGGTAAGGTCGTATGCTCATG 59.681 47.826 0.00 0.00 0.00 3.07
1547 1584 3.657015 AGGTCGTATGCTCATGATCTG 57.343 47.619 0.00 0.00 0.00 2.90
1557 1594 4.338012 TGCTCATGATCTGTCACCATTTT 58.662 39.130 0.00 0.00 37.14 1.82
1611 1652 5.180117 GGCCAGCATAGTGTACTTTATGATG 59.820 44.000 19.56 19.56 41.15 3.07
1624 1665 6.054860 ACTTTATGATGGTGCTCTTGTAGT 57.945 37.500 0.00 0.00 0.00 2.73
1684 1726 6.399986 GCAAAATTTAGAATTTGTCTCCGTGC 60.400 38.462 0.00 1.58 38.48 5.34
1711 1753 3.078837 GGTTTAAGGATTTGCCACTCGA 58.921 45.455 0.00 0.00 40.02 4.04
1721 1763 1.185315 TGCCACTCGATGTCTGATCA 58.815 50.000 0.00 0.00 0.00 2.92
1725 1767 2.188524 CACTCGATGTCTGATCAACGG 58.811 52.381 0.00 0.00 35.07 4.44
1728 1770 1.204704 TCGATGTCTGATCAACGGCTT 59.795 47.619 0.00 0.00 35.07 4.35
1736 1778 0.036388 GATCAACGGCTTGGTCCAGA 60.036 55.000 0.00 0.00 32.00 3.86
1820 1865 1.414550 CCATTTCCGTGGGTTGGTTTT 59.585 47.619 0.00 0.00 35.55 2.43
1948 2003 9.378551 TCTCAGTAGATTTGCAATAAAATACGT 57.621 29.630 0.00 0.00 29.89 3.57
2418 2711 5.174943 GCTTGGTTCAATTTACTTTGGTTCG 59.825 40.000 0.00 0.00 0.00 3.95
2458 2751 3.627577 TGTTTGAAGTTTCAGGAGTGCTC 59.372 43.478 0.00 0.00 38.61 4.26
2515 2808 9.625747 TTGTTGCTGTCATAAATCCTATATTCA 57.374 29.630 0.00 0.00 0.00 2.57
2549 2842 6.009589 TGTAATTGATGTGTTGGATGGAACT 58.990 36.000 0.00 0.00 0.00 3.01
2621 2914 7.434492 TCCTCTTACATTATCCGATCACTTTC 58.566 38.462 0.00 0.00 0.00 2.62
2672 2965 6.773976 AATGTGAAGACCAAAGTGAAAAGA 57.226 33.333 0.00 0.00 0.00 2.52
2686 2979 2.102252 TGAAAAGAAGCCGTTGCCATTT 59.898 40.909 0.00 0.00 38.69 2.32
2704 2997 7.673180 TGCCATTTTAGTACACTAGTTACTGT 58.327 34.615 19.50 8.01 0.00 3.55
2717 3010 7.279313 ACACTAGTTACTGTTACTTTTGGTGTG 59.721 37.037 17.55 13.37 30.64 3.82
3345 3638 6.947733 AGGTAATGGAAGACATGACAATGAAA 59.052 34.615 0.00 0.00 42.00 2.69
3365 3658 3.683365 AGGCATTGTTCCAACCATTTC 57.317 42.857 0.00 0.00 0.00 2.17
3686 3979 7.229506 GGACCCAATACTTGATAAGGAATTCAG 59.770 40.741 7.93 0.00 0.00 3.02
3714 4007 2.846206 TCTATTGGCCAACAGAGACCAT 59.154 45.455 22.65 4.97 30.85 3.55
3752 4045 6.405731 GGCAAATACAATCTTATTCCACAGCA 60.406 38.462 0.00 0.00 0.00 4.41
3755 4048 9.888878 CAAATACAATCTTATTCCACAGCATAG 57.111 33.333 0.00 0.00 0.00 2.23
3818 4118 2.096713 GTCACTGTTAAGCACGCTTCTG 60.097 50.000 7.71 2.06 37.47 3.02
3887 4187 5.538118 TGTGAGGTATGTGTGTTCAGTTAG 58.462 41.667 0.00 0.00 0.00 2.34
3894 4194 5.835113 ATGTGTGTTCAGTTAGCAAGTTT 57.165 34.783 0.00 0.00 0.00 2.66
3915 4215 6.381707 AGTTTCTCCTGAATCCTCCTAACTAC 59.618 42.308 0.00 0.00 31.56 2.73
3916 4216 5.735733 TCTCCTGAATCCTCCTAACTACT 57.264 43.478 0.00 0.00 0.00 2.57
3917 4217 5.697067 TCTCCTGAATCCTCCTAACTACTC 58.303 45.833 0.00 0.00 0.00 2.59
3918 4218 4.805744 TCCTGAATCCTCCTAACTACTCC 58.194 47.826 0.00 0.00 0.00 3.85
3919 4219 3.898741 CCTGAATCCTCCTAACTACTCCC 59.101 52.174 0.00 0.00 0.00 4.30
3920 4220 4.388118 CCTGAATCCTCCTAACTACTCCCT 60.388 50.000 0.00 0.00 0.00 4.20
3921 4221 4.805744 TGAATCCTCCTAACTACTCCCTC 58.194 47.826 0.00 0.00 0.00 4.30
3922 4222 3.907459 ATCCTCCTAACTACTCCCTCC 57.093 52.381 0.00 0.00 0.00 4.30
3923 4223 1.493871 TCCTCCTAACTACTCCCTCCG 59.506 57.143 0.00 0.00 0.00 4.63
3924 4224 1.214923 CCTCCTAACTACTCCCTCCGT 59.785 57.143 0.00 0.00 0.00 4.69
3925 4225 2.574450 CTCCTAACTACTCCCTCCGTC 58.426 57.143 0.00 0.00 0.00 4.79
3926 4226 1.213926 TCCTAACTACTCCCTCCGTCC 59.786 57.143 0.00 0.00 0.00 4.79
3927 4227 1.689984 CTAACTACTCCCTCCGTCCC 58.310 60.000 0.00 0.00 0.00 4.46
3928 4228 1.002069 TAACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
3929 4229 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
3930 4230 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3931 4231 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3932 4232 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3933 4233 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
3934 4234 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3935 4235 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3936 4236 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3937 4237 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3938 4238 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3939 4239 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3940 4240 5.024118 CCCTCCGTCCCATAATATAAGAGT 58.976 45.833 0.00 0.00 0.00 3.24
3941 4241 5.105310 CCCTCCGTCCCATAATATAAGAGTG 60.105 48.000 0.00 0.00 0.00 3.51
3942 4242 5.480772 CCTCCGTCCCATAATATAAGAGTGT 59.519 44.000 0.00 0.00 0.00 3.55
3943 4243 6.014499 CCTCCGTCCCATAATATAAGAGTGTT 60.014 42.308 0.00 0.00 0.00 3.32
3944 4244 7.369551 TCCGTCCCATAATATAAGAGTGTTT 57.630 36.000 0.00 0.00 0.00 2.83
3945 4245 7.798071 TCCGTCCCATAATATAAGAGTGTTTT 58.202 34.615 0.00 0.00 0.00 2.43
3946 4246 8.269317 TCCGTCCCATAATATAAGAGTGTTTTT 58.731 33.333 0.00 0.00 0.00 1.94
3988 4288 9.716507 CAAAAACACTCTTATATTATGGAACGG 57.283 33.333 0.00 0.00 0.00 4.44
3989 4289 9.675464 AAAAACACTCTTATATTATGGAACGGA 57.325 29.630 0.00 0.00 0.00 4.69
3990 4290 8.888579 AAACACTCTTATATTATGGAACGGAG 57.111 34.615 0.00 0.00 0.00 4.63
3991 4291 6.994221 ACACTCTTATATTATGGAACGGAGG 58.006 40.000 0.00 0.00 0.00 4.30
3992 4292 6.014499 ACACTCTTATATTATGGAACGGAGGG 60.014 42.308 0.00 0.00 0.00 4.30
3993 4293 6.210784 CACTCTTATATTATGGAACGGAGGGA 59.789 42.308 0.00 0.00 0.00 4.20
3994 4294 6.437793 ACTCTTATATTATGGAACGGAGGGAG 59.562 42.308 0.00 0.00 0.00 4.30
3995 4295 6.320518 TCTTATATTATGGAACGGAGGGAGT 58.679 40.000 0.00 0.00 0.00 3.85
3996 4296 7.472741 TCTTATATTATGGAACGGAGGGAGTA 58.527 38.462 0.00 0.00 0.00 2.59
4050 4350 6.376978 CGAGTTGCTTCTTCTGAAATGATTT 58.623 36.000 0.00 0.00 0.00 2.17
4053 4353 4.813027 TGCTTCTTCTGAAATGATTTGCC 58.187 39.130 0.00 0.00 0.00 4.52
4054 4354 4.525487 TGCTTCTTCTGAAATGATTTGCCT 59.475 37.500 0.00 0.00 0.00 4.75
4064 4364 4.748277 AATGATTTGCCTTTGAGGGATG 57.252 40.909 0.00 0.00 34.92 3.51
4067 4367 3.903090 TGATTTGCCTTTGAGGGATGTTT 59.097 39.130 0.00 0.00 34.92 2.83
4069 4369 1.923356 TGCCTTTGAGGGATGTTTCC 58.077 50.000 0.00 0.00 41.77 3.13
4070 4370 1.146774 TGCCTTTGAGGGATGTTTCCA 59.853 47.619 0.00 0.00 44.60 3.53
4071 4371 2.225343 TGCCTTTGAGGGATGTTTCCAT 60.225 45.455 0.00 0.00 44.60 3.41
4073 4373 3.434309 CCTTTGAGGGATGTTTCCATGT 58.566 45.455 0.00 0.00 44.60 3.21
4074 4374 3.445096 CCTTTGAGGGATGTTTCCATGTC 59.555 47.826 0.00 0.00 44.60 3.06
4075 4375 2.806945 TGAGGGATGTTTCCATGTCC 57.193 50.000 0.00 0.00 44.60 4.02
4100 4413 6.676950 CATGTACATGGTGTAGCTTCAAAAA 58.323 36.000 25.41 0.00 32.84 1.94
4102 4415 6.058833 TGTACATGGTGTAGCTTCAAAAAGA 58.941 36.000 0.00 0.00 32.84 2.52
4111 4424 7.769044 GGTGTAGCTTCAAAAAGACCTATGATA 59.231 37.037 0.00 0.00 34.14 2.15
4322 4643 2.159517 GGCAGAGCCGTTTAGTGATTTG 60.160 50.000 0.00 0.00 39.62 2.32
4328 4649 6.092122 CAGAGCCGTTTAGTGATTTGATACAA 59.908 38.462 0.00 0.00 0.00 2.41
4356 4677 9.737427 TTTGTTATTTTGCGAAGATTAAGTTGA 57.263 25.926 0.00 0.00 0.00 3.18
4475 4799 1.871039 GAAGCTGGCGTAACAAGTGAA 59.129 47.619 0.00 0.00 0.00 3.18
4558 4883 1.610522 CAAAAGTTGGGAGTCCTGCAG 59.389 52.381 9.58 6.78 0.00 4.41
4573 4898 0.701147 TGCAGAGAGAGGAGGTCAGA 59.299 55.000 0.00 0.00 0.00 3.27
4586 4911 5.463154 AGGAGGTCAGATTAGAGTAGCAAT 58.537 41.667 0.00 0.00 0.00 3.56
4587 4912 6.615617 AGGAGGTCAGATTAGAGTAGCAATA 58.384 40.000 0.00 0.00 0.00 1.90
4588 4913 7.245292 AGGAGGTCAGATTAGAGTAGCAATAT 58.755 38.462 0.00 0.00 0.00 1.28
4593 4918 9.717942 GGTCAGATTAGAGTAGCAATATCAAAT 57.282 33.333 0.00 0.00 0.00 2.32
4595 4920 9.212641 TCAGATTAGAGTAGCAATATCAAATGC 57.787 33.333 0.00 0.00 42.87 3.56
4596 4921 8.996271 CAGATTAGAGTAGCAATATCAAATGCA 58.004 33.333 0.00 0.00 44.95 3.96
4597 4922 9.217278 AGATTAGAGTAGCAATATCAAATGCAG 57.783 33.333 0.00 0.00 44.95 4.41
4598 4923 9.212641 GATTAGAGTAGCAATATCAAATGCAGA 57.787 33.333 0.00 0.00 44.95 4.26
4600 4925 6.590068 AGAGTAGCAATATCAAATGCAGACT 58.410 36.000 0.00 3.21 44.95 3.24
4603 4928 5.909621 AGCAATATCAAATGCAGACTTGT 57.090 34.783 0.00 0.00 44.95 3.16
4604 4929 6.276832 AGCAATATCAAATGCAGACTTGTT 57.723 33.333 0.00 0.00 44.95 2.83
4605 4930 7.395190 AGCAATATCAAATGCAGACTTGTTA 57.605 32.000 0.00 0.00 44.95 2.41
4606 4931 7.253422 AGCAATATCAAATGCAGACTTGTTAC 58.747 34.615 0.00 0.00 44.95 2.50
4607 4932 6.195244 GCAATATCAAATGCAGACTTGTTACG 59.805 38.462 0.00 0.00 42.12 3.18
4608 4933 3.536158 TCAAATGCAGACTTGTTACGC 57.464 42.857 0.00 0.00 0.00 4.42
4609 4934 2.875317 TCAAATGCAGACTTGTTACGCA 59.125 40.909 0.00 0.00 36.95 5.24
4610 4935 3.501828 TCAAATGCAGACTTGTTACGCAT 59.498 39.130 0.00 0.00 44.84 4.73
4611 4936 3.476295 AATGCAGACTTGTTACGCATG 57.524 42.857 0.00 0.00 42.24 4.06
4612 4937 1.155889 TGCAGACTTGTTACGCATGG 58.844 50.000 0.00 0.00 0.00 3.66
4613 4938 1.270571 TGCAGACTTGTTACGCATGGA 60.271 47.619 0.00 0.00 0.00 3.41
4614 4939 1.128692 GCAGACTTGTTACGCATGGAC 59.871 52.381 0.00 0.00 0.00 4.02
4615 4940 1.732259 CAGACTTGTTACGCATGGACC 59.268 52.381 0.00 0.00 0.00 4.46
4616 4941 1.623811 AGACTTGTTACGCATGGACCT 59.376 47.619 0.00 0.00 0.00 3.85
4617 4942 1.732259 GACTTGTTACGCATGGACCTG 59.268 52.381 0.00 0.00 0.00 4.00
4641 4966 0.179234 TTTTCCTCCGGCGCATATCA 59.821 50.000 10.83 0.00 0.00 2.15
4661 4987 6.889301 ATCAAAAGCTGAGATGAAACTTGA 57.111 33.333 0.00 0.00 37.52 3.02
4672 4998 1.879380 TGAAACTTGATGCCGGTGAAG 59.121 47.619 1.90 2.82 0.00 3.02
4675 5001 1.237285 ACTTGATGCCGGTGAAGTGC 61.237 55.000 1.90 0.00 0.00 4.40
4679 5005 0.598065 GATGCCGGTGAAGTGCTTTT 59.402 50.000 1.90 0.00 0.00 2.27
4682 5008 0.040067 GCCGGTGAAGTGCTTTTCTG 60.040 55.000 1.90 0.00 0.00 3.02
4742 5077 5.010213 GCACCTAGAGGAGTCGAAATATTCT 59.990 44.000 1.60 0.00 38.94 2.40
4743 5078 6.674066 CACCTAGAGGAGTCGAAATATTCTC 58.326 44.000 1.60 0.00 38.94 2.87
4744 5079 6.263392 CACCTAGAGGAGTCGAAATATTCTCA 59.737 42.308 1.60 0.00 38.94 3.27
4745 5080 6.263617 ACCTAGAGGAGTCGAAATATTCTCAC 59.736 42.308 1.60 0.00 38.94 3.51
4746 5081 5.176407 AGAGGAGTCGAAATATTCTCACG 57.824 43.478 0.00 0.00 0.00 4.35
4747 5082 4.882427 AGAGGAGTCGAAATATTCTCACGA 59.118 41.667 0.00 0.00 0.00 4.35
4748 5083 5.357314 AGAGGAGTCGAAATATTCTCACGAA 59.643 40.000 0.00 0.00 34.91 3.85
4749 5084 5.341617 AGGAGTCGAAATATTCTCACGAAC 58.658 41.667 0.00 0.00 34.91 3.95
4750 5085 5.125739 AGGAGTCGAAATATTCTCACGAACT 59.874 40.000 0.00 0.00 34.91 3.01
4751 5086 5.456173 GGAGTCGAAATATTCTCACGAACTC 59.544 44.000 0.00 0.00 34.91 3.01
4752 5087 6.197364 AGTCGAAATATTCTCACGAACTCT 57.803 37.500 0.00 0.00 34.91 3.24
4753 5088 6.622549 AGTCGAAATATTCTCACGAACTCTT 58.377 36.000 0.00 0.00 34.91 2.85
4754 5089 6.528423 AGTCGAAATATTCTCACGAACTCTTG 59.472 38.462 0.00 0.00 34.91 3.02
4755 5090 6.527023 GTCGAAATATTCTCACGAACTCTTGA 59.473 38.462 0.00 0.00 34.91 3.02
4756 5091 6.527023 TCGAAATATTCTCACGAACTCTTGAC 59.473 38.462 0.00 0.00 30.67 3.18
4757 5092 6.308041 CGAAATATTCTCACGAACTCTTGACA 59.692 38.462 0.00 0.00 30.67 3.58
4758 5093 7.009631 CGAAATATTCTCACGAACTCTTGACAT 59.990 37.037 0.00 0.00 30.67 3.06
4759 5094 9.302345 GAAATATTCTCACGAACTCTTGACATA 57.698 33.333 0.00 0.00 30.67 2.29
4760 5095 9.823647 AAATATTCTCACGAACTCTTGACATAT 57.176 29.630 0.00 0.00 30.67 1.78
4762 5097 9.900710 ATATTCTCACGAACTCTTGACATATAC 57.099 33.333 0.00 0.00 30.67 1.47
4763 5098 6.132791 TCTCACGAACTCTTGACATATACC 57.867 41.667 0.00 0.00 0.00 2.73
4764 5099 5.650703 TCTCACGAACTCTTGACATATACCA 59.349 40.000 0.00 0.00 0.00 3.25
4765 5100 6.152154 TCTCACGAACTCTTGACATATACCAA 59.848 38.462 0.00 0.00 0.00 3.67
4766 5101 6.873997 TCACGAACTCTTGACATATACCAAT 58.126 36.000 0.00 0.00 0.00 3.16
4767 5102 6.978659 TCACGAACTCTTGACATATACCAATC 59.021 38.462 0.00 0.00 0.00 2.67
4768 5103 6.980978 CACGAACTCTTGACATATACCAATCT 59.019 38.462 0.00 0.00 0.00 2.40
4769 5104 7.168302 CACGAACTCTTGACATATACCAATCTC 59.832 40.741 0.00 0.00 0.00 2.75
4770 5105 7.068839 ACGAACTCTTGACATATACCAATCTCT 59.931 37.037 0.00 0.00 0.00 3.10
4771 5106 7.593273 CGAACTCTTGACATATACCAATCTCTC 59.407 40.741 0.00 0.00 0.00 3.20
4772 5107 8.546083 AACTCTTGACATATACCAATCTCTCT 57.454 34.615 0.00 0.00 0.00 3.10
4773 5108 8.177119 ACTCTTGACATATACCAATCTCTCTC 57.823 38.462 0.00 0.00 0.00 3.20
4774 5109 8.004215 ACTCTTGACATATACCAATCTCTCTCT 58.996 37.037 0.00 0.00 0.00 3.10
4775 5110 8.402798 TCTTGACATATACCAATCTCTCTCTC 57.597 38.462 0.00 0.00 0.00 3.20
4776 5111 8.224025 TCTTGACATATACCAATCTCTCTCTCT 58.776 37.037 0.00 0.00 0.00 3.10
4777 5112 7.994425 TGACATATACCAATCTCTCTCTCTC 57.006 40.000 0.00 0.00 0.00 3.20
4778 5113 7.754624 TGACATATACCAATCTCTCTCTCTCT 58.245 38.462 0.00 0.00 0.00 3.10
4779 5114 7.882791 TGACATATACCAATCTCTCTCTCTCTC 59.117 40.741 0.00 0.00 0.00 3.20
4780 5115 7.988937 ACATATACCAATCTCTCTCTCTCTCT 58.011 38.462 0.00 0.00 0.00 3.10
4781 5116 8.103305 ACATATACCAATCTCTCTCTCTCTCTC 58.897 40.741 0.00 0.00 0.00 3.20
4782 5117 6.770286 ATACCAATCTCTCTCTCTCTCTCT 57.230 41.667 0.00 0.00 0.00 3.10
4783 5118 5.041191 ACCAATCTCTCTCTCTCTCTCTC 57.959 47.826 0.00 0.00 0.00 3.20
4784 5119 4.723789 ACCAATCTCTCTCTCTCTCTCTCT 59.276 45.833 0.00 0.00 0.00 3.10
4785 5120 5.163258 ACCAATCTCTCTCTCTCTCTCTCTC 60.163 48.000 0.00 0.00 0.00 3.20
4786 5121 5.071519 CCAATCTCTCTCTCTCTCTCTCTCT 59.928 48.000 0.00 0.00 0.00 3.10
4787 5122 6.222389 CAATCTCTCTCTCTCTCTCTCTCTC 58.778 48.000 0.00 0.00 0.00 3.20
4788 5123 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
4789 5124 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.552355 CCCCTCAATTTTACAAAACCGAC 58.448 43.478 0.00 0.00 0.00 4.79
77 78 7.525360 GCCCAAAATTCTTACAATCCAAAGAGA 60.525 37.037 0.00 0.00 33.49 3.10
98 99 3.757270 TCTTAAGATTGAAACGGCCCAA 58.243 40.909 0.00 0.00 0.00 4.12
128 129 6.389869 TCCTATGATCCAAGGGTTTTCATAGT 59.610 38.462 19.20 0.95 35.89 2.12
195 197 0.988063 GAGAATCCTATGGAGGGGGC 59.012 60.000 0.00 0.00 43.94 5.80
197 199 3.048600 TGTTGAGAATCCTATGGAGGGG 58.951 50.000 0.00 0.00 43.94 4.79
198 200 4.349048 TCATGTTGAGAATCCTATGGAGGG 59.651 45.833 0.00 0.00 43.94 4.30
199 201 5.557576 TCATGTTGAGAATCCTATGGAGG 57.442 43.478 0.00 0.00 45.35 4.30
249 251 6.360618 AGAATGAAAGTGACTTGGACTTCTT 58.639 36.000 0.00 0.00 32.33 2.52
252 254 7.684529 AGATAGAATGAAAGTGACTTGGACTT 58.315 34.615 0.00 0.00 35.08 3.01
269 271 6.276806 TGAGATGGGGTAGAGAGAGATAGAAT 59.723 42.308 0.00 0.00 0.00 2.40
270 272 5.613116 TGAGATGGGGTAGAGAGAGATAGAA 59.387 44.000 0.00 0.00 0.00 2.10
305 307 6.424812 GCCTTTCATTAGTGCACAAGAATTTT 59.575 34.615 21.04 0.00 0.00 1.82
448 450 3.255725 TGCAAATCGACTACTTAACCCG 58.744 45.455 0.00 0.00 0.00 5.28
828 852 7.504922 TGTGTTTCGATTTTTGTCTTTTCTG 57.495 32.000 0.00 0.00 0.00 3.02
830 854 7.148722 TGGTTGTGTTTCGATTTTTGTCTTTTC 60.149 33.333 0.00 0.00 0.00 2.29
831 855 6.647067 TGGTTGTGTTTCGATTTTTGTCTTTT 59.353 30.769 0.00 0.00 0.00 2.27
832 856 6.159988 TGGTTGTGTTTCGATTTTTGTCTTT 58.840 32.000 0.00 0.00 0.00 2.52
833 857 5.715070 TGGTTGTGTTTCGATTTTTGTCTT 58.285 33.333 0.00 0.00 0.00 3.01
834 858 5.317733 TGGTTGTGTTTCGATTTTTGTCT 57.682 34.783 0.00 0.00 0.00 3.41
835 859 5.051106 CCATGGTTGTGTTTCGATTTTTGTC 60.051 40.000 2.57 0.00 0.00 3.18
836 860 4.808364 CCATGGTTGTGTTTCGATTTTTGT 59.192 37.500 2.57 0.00 0.00 2.83
837 861 4.808364 ACCATGGTTGTGTTTCGATTTTTG 59.192 37.500 13.00 0.00 0.00 2.44
1117 1154 2.290093 GGATAGGGTGAACGTACTCGAG 59.710 54.545 11.84 11.84 40.62 4.04
1405 1442 0.764890 GCAGACCATATGGCCAGGTA 59.235 55.000 22.18 1.46 39.32 3.08
1573 1610 2.767394 TGCTGGCCAAATGCTTGATTAT 59.233 40.909 15.70 0.00 40.92 1.28
1611 1652 4.487019 GAACAGAGTACTACAAGAGCACC 58.513 47.826 0.00 0.00 0.00 5.01
1624 1665 2.167693 CCATAGCCAACGGAACAGAGTA 59.832 50.000 0.00 0.00 0.00 2.59
1684 1726 2.929398 GGCAAATCCTTAAACCGCAATG 59.071 45.455 0.00 0.00 0.00 2.82
1711 1753 1.003580 ACCAAGCCGTTGATCAGACAT 59.996 47.619 0.00 0.00 35.46 3.06
1786 1829 6.448006 CACGGAAATGGGTTTACAAACATTA 58.552 36.000 7.12 0.00 40.63 1.90
1806 1850 1.338655 CCAACTAAAACCAACCCACGG 59.661 52.381 0.00 0.00 0.00 4.94
1807 1851 2.025898 ACCAACTAAAACCAACCCACG 58.974 47.619 0.00 0.00 0.00 4.94
1812 1857 6.167685 AGAAACCAAACCAACTAAAACCAAC 58.832 36.000 0.00 0.00 0.00 3.77
1820 1865 4.642885 CACTCCAAGAAACCAAACCAACTA 59.357 41.667 0.00 0.00 0.00 2.24
2095 2152 5.187967 CACTCCTACAGTCATACTTTTCCCT 59.812 44.000 0.00 0.00 30.26 4.20
2418 2711 6.326375 TCAAACATCAACACAACAAGTAACC 58.674 36.000 0.00 0.00 0.00 2.85
2458 2751 8.671921 ACACTCAATAATCAAGATGCTAAGTTG 58.328 33.333 0.00 0.00 0.00 3.16
2515 2808 6.554334 ACACATCAATTACACTAAAAGCGT 57.446 33.333 0.00 0.00 0.00 5.07
2621 2914 8.577939 CAAAAGCAAAATACAGTTATGATGTCG 58.422 33.333 0.00 0.00 32.02 4.35
2672 2965 3.057806 GTGTACTAAAATGGCAACGGCTT 60.058 43.478 0.00 0.00 40.87 4.35
2717 3010 4.158394 TCCTTACAATGAAAGAAGCATGGC 59.842 41.667 0.00 0.00 0.00 4.40
3051 3344 5.104610 ACAACAGACCATGAGAGCATAAGAT 60.105 40.000 0.00 0.00 32.27 2.40
3365 3658 3.463533 TCAAAAATGCATGGTACGTCG 57.536 42.857 0.00 0.00 0.00 5.12
3592 3885 4.334203 TCGTGGTATGCATCCATGTTTAAC 59.666 41.667 24.50 8.85 41.28 2.01
3686 3979 5.473504 TCTCTGTTGGCCAATAGAAAAGTTC 59.526 40.000 35.47 15.58 37.94 3.01
3714 4007 0.700564 ATTTGCCTGCTCCTCTCCAA 59.299 50.000 0.00 0.00 0.00 3.53
3752 4045 5.581085 GTCCGTCTTGTAGAATGTTTGCTAT 59.419 40.000 0.00 0.00 0.00 2.97
3755 4048 3.496884 TGTCCGTCTTGTAGAATGTTTGC 59.503 43.478 0.00 0.00 0.00 3.68
3818 4118 3.955771 TTGTCGTACAAAAGAAGCACC 57.044 42.857 0.00 0.00 34.76 5.01
3887 4187 3.013219 GGAGGATTCAGGAGAAACTTGC 58.987 50.000 0.00 0.00 37.29 4.01
3894 4194 5.399267 GGAGTAGTTAGGAGGATTCAGGAGA 60.399 48.000 0.00 0.00 0.00 3.71
3915 4215 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3916 4216 5.222484 ACTCTTATATTATGGGACGGAGGGA 60.222 44.000 0.00 0.00 0.00 4.20
3917 4217 5.024118 ACTCTTATATTATGGGACGGAGGG 58.976 45.833 0.00 0.00 0.00 4.30
3918 4218 5.480772 ACACTCTTATATTATGGGACGGAGG 59.519 44.000 0.00 0.00 0.00 4.30
3919 4219 6.591750 ACACTCTTATATTATGGGACGGAG 57.408 41.667 0.00 0.00 0.00 4.63
3920 4220 6.989155 AACACTCTTATATTATGGGACGGA 57.011 37.500 0.00 0.00 0.00 4.69
3921 4221 8.446599 AAAAACACTCTTATATTATGGGACGG 57.553 34.615 0.00 0.00 0.00 4.79
3962 4262 9.716507 CCGTTCCATAATATAAGAGTGTTTTTG 57.283 33.333 0.00 0.00 0.00 2.44
3963 4263 9.675464 TCCGTTCCATAATATAAGAGTGTTTTT 57.325 29.630 0.00 0.00 0.00 1.94
3964 4264 9.326413 CTCCGTTCCATAATATAAGAGTGTTTT 57.674 33.333 0.00 0.00 0.00 2.43
3965 4265 7.931948 CCTCCGTTCCATAATATAAGAGTGTTT 59.068 37.037 0.00 0.00 0.00 2.83
3966 4266 7.442656 CCTCCGTTCCATAATATAAGAGTGTT 58.557 38.462 0.00 0.00 0.00 3.32
3967 4267 6.014499 CCCTCCGTTCCATAATATAAGAGTGT 60.014 42.308 0.00 0.00 0.00 3.55
3968 4268 6.210784 TCCCTCCGTTCCATAATATAAGAGTG 59.789 42.308 0.00 0.00 0.00 3.51
3969 4269 6.320518 TCCCTCCGTTCCATAATATAAGAGT 58.679 40.000 0.00 0.00 0.00 3.24
3970 4270 6.437793 ACTCCCTCCGTTCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
3971 4271 6.320518 ACTCCCTCCGTTCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
3972 4272 6.607004 ACTCCCTCCGTTCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
3973 4273 7.510001 TGTTACTCCCTCCGTTCCATAATATAA 59.490 37.037 0.00 0.00 0.00 0.98
3974 4274 7.011994 TGTTACTCCCTCCGTTCCATAATATA 58.988 38.462 0.00 0.00 0.00 0.86
3975 4275 5.842328 TGTTACTCCCTCCGTTCCATAATAT 59.158 40.000 0.00 0.00 0.00 1.28
3976 4276 5.210430 TGTTACTCCCTCCGTTCCATAATA 58.790 41.667 0.00 0.00 0.00 0.98
3977 4277 4.035112 TGTTACTCCCTCCGTTCCATAAT 58.965 43.478 0.00 0.00 0.00 1.28
3978 4278 3.443052 TGTTACTCCCTCCGTTCCATAA 58.557 45.455 0.00 0.00 0.00 1.90
3979 4279 3.104519 TGTTACTCCCTCCGTTCCATA 57.895 47.619 0.00 0.00 0.00 2.74
3980 4280 1.946984 TGTTACTCCCTCCGTTCCAT 58.053 50.000 0.00 0.00 0.00 3.41
3981 4281 1.719529 TTGTTACTCCCTCCGTTCCA 58.280 50.000 0.00 0.00 0.00 3.53
3982 4282 2.224354 TGTTTGTTACTCCCTCCGTTCC 60.224 50.000 0.00 0.00 0.00 3.62
3983 4283 3.116079 TGTTTGTTACTCCCTCCGTTC 57.884 47.619 0.00 0.00 0.00 3.95
3984 4284 3.071892 TCATGTTTGTTACTCCCTCCGTT 59.928 43.478 0.00 0.00 0.00 4.44
3985 4285 2.635915 TCATGTTTGTTACTCCCTCCGT 59.364 45.455 0.00 0.00 0.00 4.69
3986 4286 3.328382 TCATGTTTGTTACTCCCTCCG 57.672 47.619 0.00 0.00 0.00 4.63
3987 4287 4.217767 GGTTTCATGTTTGTTACTCCCTCC 59.782 45.833 0.00 0.00 0.00 4.30
3988 4288 4.083484 CGGTTTCATGTTTGTTACTCCCTC 60.083 45.833 0.00 0.00 0.00 4.30
3989 4289 3.818773 CGGTTTCATGTTTGTTACTCCCT 59.181 43.478 0.00 0.00 0.00 4.20
3990 4290 3.610821 GCGGTTTCATGTTTGTTACTCCC 60.611 47.826 0.00 0.00 0.00 4.30
3991 4291 3.252458 AGCGGTTTCATGTTTGTTACTCC 59.748 43.478 0.00 0.00 0.00 3.85
3992 4292 4.483476 AGCGGTTTCATGTTTGTTACTC 57.517 40.909 0.00 0.00 0.00 2.59
3993 4293 6.038936 ACTTTAGCGGTTTCATGTTTGTTACT 59.961 34.615 0.00 0.00 0.00 2.24
3994 4294 6.203647 ACTTTAGCGGTTTCATGTTTGTTAC 58.796 36.000 0.00 0.00 0.00 2.50
3995 4295 6.380095 ACTTTAGCGGTTTCATGTTTGTTA 57.620 33.333 0.00 0.00 0.00 2.41
3996 4296 5.257082 ACTTTAGCGGTTTCATGTTTGTT 57.743 34.783 0.00 0.00 0.00 2.83
4050 4350 1.146774 TGGAAACATCCCTCAAAGGCA 59.853 47.619 0.00 0.00 30.90 4.75
4064 4364 4.637483 CATGTACATGGGACATGGAAAC 57.363 45.455 25.41 8.75 46.88 2.78
4093 4406 6.547141 CCATGGCTATCATAGGTCTTTTTGAA 59.453 38.462 0.00 0.00 34.12 2.69
4100 4413 3.282135 ACCCATGGCTATCATAGGTCT 57.718 47.619 6.09 0.00 42.88 3.85
4164 4479 9.451002 CTGAGAAGGCATAGATATGAAATGATT 57.549 33.333 4.01 0.00 35.75 2.57
4187 4502 6.582636 CCTACTGCAATACCTGTAATTCTGA 58.417 40.000 0.00 0.00 0.00 3.27
4356 4677 6.740905 CGTAAAACGTATGCTTTTCATGTGAT 59.259 34.615 0.00 0.00 36.74 3.06
4475 4799 4.917415 GCTGTCTTGCACGATAACATTTTT 59.083 37.500 0.00 0.00 0.00 1.94
4558 4883 5.048846 ACTCTAATCTGACCTCCTCTCTC 57.951 47.826 0.00 0.00 0.00 3.20
4573 4898 8.997323 GTCTGCATTTGATATTGCTACTCTAAT 58.003 33.333 0.00 0.00 39.60 1.73
4586 4911 4.693095 TGCGTAACAAGTCTGCATTTGATA 59.307 37.500 11.33 3.23 0.00 2.15
4587 4912 3.501828 TGCGTAACAAGTCTGCATTTGAT 59.498 39.130 11.33 4.02 0.00 2.57
4588 4913 2.875317 TGCGTAACAAGTCTGCATTTGA 59.125 40.909 11.33 0.00 0.00 2.69
4593 4918 1.155889 CCATGCGTAACAAGTCTGCA 58.844 50.000 0.00 0.00 40.23 4.41
4594 4919 1.128692 GTCCATGCGTAACAAGTCTGC 59.871 52.381 0.00 0.00 0.00 4.26
4595 4920 1.732259 GGTCCATGCGTAACAAGTCTG 59.268 52.381 0.00 0.00 0.00 3.51
4596 4921 1.623811 AGGTCCATGCGTAACAAGTCT 59.376 47.619 0.00 0.00 0.00 3.24
4597 4922 1.732259 CAGGTCCATGCGTAACAAGTC 59.268 52.381 0.00 0.00 0.00 3.01
4598 4923 1.071699 ACAGGTCCATGCGTAACAAGT 59.928 47.619 0.00 0.00 0.00 3.16
4600 4925 1.876799 CAACAGGTCCATGCGTAACAA 59.123 47.619 0.00 0.00 0.00 2.83
4603 4928 2.264005 AACAACAGGTCCATGCGTAA 57.736 45.000 0.00 0.00 0.00 3.18
4604 4929 2.264005 AAACAACAGGTCCATGCGTA 57.736 45.000 0.00 0.00 0.00 4.42
4605 4930 1.398692 AAAACAACAGGTCCATGCGT 58.601 45.000 0.00 0.00 0.00 5.24
4606 4931 2.393764 GAAAAACAACAGGTCCATGCG 58.606 47.619 0.00 0.00 0.00 4.73
4607 4932 2.365293 AGGAAAAACAACAGGTCCATGC 59.635 45.455 0.00 0.00 0.00 4.06
4608 4933 3.005791 GGAGGAAAAACAACAGGTCCATG 59.994 47.826 0.00 0.00 0.00 3.66
4609 4934 3.230976 GGAGGAAAAACAACAGGTCCAT 58.769 45.455 0.00 0.00 0.00 3.41
4610 4935 2.661718 GGAGGAAAAACAACAGGTCCA 58.338 47.619 0.00 0.00 0.00 4.02
4611 4936 1.607148 CGGAGGAAAAACAACAGGTCC 59.393 52.381 0.00 0.00 0.00 4.46
4641 4966 5.467705 GCATCAAGTTTCATCTCAGCTTTT 58.532 37.500 0.00 0.00 0.00 2.27
4660 4986 0.598065 AAAAGCACTTCACCGGCATC 59.402 50.000 0.00 0.00 0.00 3.91
4661 4987 0.598065 GAAAAGCACTTCACCGGCAT 59.402 50.000 0.00 0.00 0.00 4.40
4672 4998 6.145535 CCAACAGTTTCTATCAGAAAAGCAC 58.854 40.000 3.04 0.00 44.84 4.40
4675 5001 6.263168 ACCACCAACAGTTTCTATCAGAAAAG 59.737 38.462 3.04 2.76 44.84 2.27
4679 5005 4.641396 CACCACCAACAGTTTCTATCAGA 58.359 43.478 0.00 0.00 0.00 3.27
4682 5008 3.058224 GTGCACCACCAACAGTTTCTATC 60.058 47.826 5.22 0.00 0.00 2.08
4710 5045 1.546476 CTCCTCTAGGTGCACTTTCGT 59.454 52.381 17.98 0.00 36.34 3.85
4711 5046 1.546476 ACTCCTCTAGGTGCACTTTCG 59.454 52.381 17.98 4.20 36.34 3.46
4721 5056 6.566942 CGTGAGAATATTTCGACTCCTCTAGG 60.567 46.154 0.00 0.00 34.02 3.02
4742 5077 5.907866 TGGTATATGTCAAGAGTTCGTGA 57.092 39.130 0.00 0.00 32.16 4.35
4743 5078 6.980978 AGATTGGTATATGTCAAGAGTTCGTG 59.019 38.462 0.00 0.00 0.00 4.35
4744 5079 7.068839 AGAGATTGGTATATGTCAAGAGTTCGT 59.931 37.037 0.00 0.00 0.00 3.85
4745 5080 7.429633 AGAGATTGGTATATGTCAAGAGTTCG 58.570 38.462 0.00 0.00 0.00 3.95
4746 5081 8.637986 AGAGAGATTGGTATATGTCAAGAGTTC 58.362 37.037 0.00 0.00 0.00 3.01
4747 5082 8.546083 AGAGAGATTGGTATATGTCAAGAGTT 57.454 34.615 0.00 0.00 0.00 3.01
4748 5083 8.004215 AGAGAGAGATTGGTATATGTCAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
4749 5084 8.408043 AGAGAGAGATTGGTATATGTCAAGAG 57.592 38.462 0.00 0.00 0.00 2.85
4750 5085 8.224025 AGAGAGAGAGATTGGTATATGTCAAGA 58.776 37.037 0.00 0.00 0.00 3.02
4751 5086 8.408043 AGAGAGAGAGATTGGTATATGTCAAG 57.592 38.462 0.00 0.00 0.00 3.02
4752 5087 8.224025 AGAGAGAGAGAGATTGGTATATGTCAA 58.776 37.037 0.00 0.00 0.00 3.18
4753 5088 7.754624 AGAGAGAGAGAGATTGGTATATGTCA 58.245 38.462 0.00 0.00 0.00 3.58
4754 5089 8.103305 AGAGAGAGAGAGAGATTGGTATATGTC 58.897 40.741 0.00 0.00 0.00 3.06
4755 5090 7.988937 AGAGAGAGAGAGAGATTGGTATATGT 58.011 38.462 0.00 0.00 0.00 2.29
4756 5091 8.324306 AGAGAGAGAGAGAGAGATTGGTATATG 58.676 40.741 0.00 0.00 0.00 1.78
4757 5092 8.454859 AGAGAGAGAGAGAGAGATTGGTATAT 57.545 38.462 0.00 0.00 0.00 0.86
4758 5093 7.734865 AGAGAGAGAGAGAGAGAGATTGGTATA 59.265 40.741 0.00 0.00 0.00 1.47
4759 5094 6.560304 AGAGAGAGAGAGAGAGAGATTGGTAT 59.440 42.308 0.00 0.00 0.00 2.73
4760 5095 5.905331 AGAGAGAGAGAGAGAGAGATTGGTA 59.095 44.000 0.00 0.00 0.00 3.25
4761 5096 4.723789 AGAGAGAGAGAGAGAGAGATTGGT 59.276 45.833 0.00 0.00 0.00 3.67
4762 5097 5.071519 AGAGAGAGAGAGAGAGAGAGATTGG 59.928 48.000 0.00 0.00 0.00 3.16
4763 5098 6.041865 AGAGAGAGAGAGAGAGAGAGAGATTG 59.958 46.154 0.00 0.00 0.00 2.67
4764 5099 6.142498 AGAGAGAGAGAGAGAGAGAGAGATT 58.858 44.000 0.00 0.00 0.00 2.40
4765 5100 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
4766 5101 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
4767 5102 5.452078 GAGAGAGAGAGAGAGAGAGAGAG 57.548 52.174 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.