>input_sequence_27862
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-------------------------------------------------------------------------ATGGCTC
CGCCGCTCTCCGCCGCCCTCCGCCGCCACC---TCCTCCCCCACCGTTTCCCCCTGCTTCCCTCCCGCCACGTTAGCCTC
TCCACCAGCCACTCCTCCTCCGACCAAAGCGACCTCGAGTACGTTCACCCTATCCCCCCTGCCCCCGACGACGACGGCGA
GCTCACCTCCTTCCTCCGTCGCATCTCCCACGCCTCCTCCGCCGCGTCTTCCCCGAAGGACGCCCTCTCCCTCCTTCTTT
CCTCCTCTTCTGGCCCATCGCCGTCCCCTCCCTCCTTCGTCCGCGCGGTGTGGGAACTGCGCCGCGACCCGGAGGCAGCA
GCGCTCGCGCTTCTCTGGGGCGACGAGTGCAGCGCCACGTCCGGCGCTGAGGGGGCGGGGTCCCTGCCGGCCGAGGCGTG
GTACCTGGCCATATGGTCTGCGGGGAGGGCTGGGCGGTTCGACCTGGCGTGGGCGGCCGTGCGGTGGATGCAGCGCCGTG
GGGTGCTGACCCGCCGTGCCATGGTCATCTTGATGGAGAGGTAAGGTCGTATGCTCATGATCTGTCACCATTTTATGATA
TTATTAGGTATAATCAAGCATTTGGCCAGCATAGT----GTACTTTATGATGGTGCTCTTGTAGTACTCTGTTCCGTTGG
CTATGGCTCTAT-AATGTAGGCAAAATTTAGAATTTGTCTCCGTGCATTGCGGTTTAAGGATTTGCCACTCGATGTCTGA
TCAACGGCTTGGTCCAGACCAAATGTGAGTGACTCATATTATTAC-AAGACATAAATTCCCCTAATAAT-AATGTTTGTA
AACCCATTTCC-GTGGGTTGGTTTTAGTTGGTTTGGTTTCTTGGAGTGGTATTGCAGTGAATGTGAGCCAAGGGACTAGG
TATATAACCAGCAACAGAGTAAAGGAGGTGCTTACTT------TACTAGAAATCTCAGTAGATTTGCAATAAAAT----A
CGTACATCATAGCAAAATTGCATTGCACCGATACAAACACTGGTGTGTTAGTGAAGTAG--ACATAATTCTGAGAACAAG
AAAAGGATGATGGTCACACTGGTGAGTTTTCTGCAATGATCCAGTGCTTTAGATTGGGTTTCAGGTAAACAAGGGAAAAG
TA-TGACTGTAGGAGTGAACAGTGAACACAACATTCTGCTGAATAACTTTTGTGACATTCGACATATTTTGTTATGCAAT
GTGCATTGCTTCTATTGTGGTCATAGAAGGG-------------------------------------------------
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-------------------------GGGTGGATGCTTGAGCTATAGGTGCTTAAGTTATTTTGAGAGCTAAAAAAGTGAT
TGCCTGCTTGTAAAAATGTTGTTGACATAAGAAGCTTTATTACTCGTCTTCATAGG-ATATTCTAATCTTCTAGCCATGT
GATGATGATAGTATAGTGAGTGATGATTGACATGTATTGTGTGAGTGCTTGGTTCAATTTACTTTGGTTCGGTTACTTGT
TGTGTTGATGTTTGAAGTTTCAGGAGTGCTCAACTTAGCATCTTGATTATTGAGTGTGGTGTTGTTGCTGTCATAAATCC
TATATTCACGCTTTTAGTGTAATTGATGTGTTGGATGGAACTTATAATTCCCTACATCTGAATCTATTTACTAGCACTGC
TATGGGGCTCCTCTTACATTATCCGATCACTTTCGACATCATAACTGTATTTTGCTTTTGTAATGTGAAGACCAAAGTGA
AAAGAAGCCGTTGCCATTTTAGTACACTAGTTACTGTTACTTTTGGTGTGCCATGCTTCTTTCATTGTAAGGATTTGTTT
ATGAAATTTCAGGTATGCAGCTGCCAATGAAGTGAAGAAAGCAGTCAAGACCTTTGATGTGATGGAGAGGTTTAAAGTGG
AAGTGGACCAAACTGTATTCTATTCCCTTCTTCGTGCTCTTTGCAGAAGTAAAAACATAGAAGATGCTGAAGAGTTGCTT
CTTGCAAGAAGGAAATTTTTCCCACTCACGGCCGAAGGTTTCAATATAATACTTGATGGTTGGTGTAATATCTTCACCGA
TGTGGCCGAAGTAAAGAGGGTTTGGCGAGAAATGTCAAATTGCTGCATTACTCCTGATGGTACATCTTATGCTCTCATGG
TCTGTTGTTTCTCAAAGGTAGGGAACCTTTTTGATACTCTGAGGGTTTACGATGAGATGAAGAAGAGGGGTTGGACTCCT
GGTATTGGTGTCTATAACCAACTTATTTATGTTCTGACAAGAGAGAATTGCATGAAGGATGCAAGAAATGTTCTCAGTAA
AATTGTGGATGAAGGTCTCCAACCGGATGTTGAAACATACAACAGTATTATAGTTCCACTTTGTGAAAGTTGCAAGCTTG
AGGAAGCACGAGAGGTAATGGAAGACATGACAATGAAAGGCATTGTTCCAACCATTTCGACGTACCATGCATTTTTGAAA
CAGGAAGGCATTGACGAAACACTGCAGCTACTGAAGAAAATGAAAGAAGATGGCTGTGGCCCTAACAGCGACACATTTCT
CATGCTCATTGATAAGTTTATCCAATTGAATGAGTCTGGGAATGCTCTGAGGGTGTGGACTGAAATGCGAAGATACGACA
TTAGGCCTGGTTATGCACACTACATGGCAGTGGTCCAAGGTTTGGTTAAACATGGATGCATACCACGAGCTTTAGAGTAT
TATGATGAAATGAAGGCAAATGGTTTTGCTTCGGACCCAATACTTGATAAGGAATTCAGAACTTTTCTATTGGCCAACAG
AGACCATTGGAGAGGAGCAGGCAAATACAATCTTATTCCACAGCATAGCAAACATTCTACAAGACGGACAAGAATTCCGT
AA------------------------------------------------------------------------------
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----
>chr1D_1_TraesCS1D01G227500
CCAAAACCACCTTCCAAGCTTTTAGGGACGATTTGTCGGTTTTGTAAAATTGAGGGGCGAAATACATGATTTTTGTGTCT
CTTTGGATTGTAAGAATTTTGGGCCGTTTCAATCTTAAGAAAAAAGTGACTATGAAAACCCTTGGATCATAGGATTGGAG
TCACCAAATTTCTATG-AATCATTTCCTATCCCCCCGCCCCCTCCATAGGATTCTCAACATGAGCACAAACCTCATTTTA
ATTTTCCTCCAAGAAGTCCAAGTCACTTTCATTCTATCTCTCTCTACCCCATCTCATCAATCCTTTAAAATTCTTGTGCA
CTAATGAAAGGCACATATTGCGGAATATAATGTAATTTTTTTCACATTACATGACATCTTAACCCTACGCTTCCCCCCCT
ATTTCTACGTTTTTAAATCCCTACAGTCCAAATAGGCCCTTACAGTTGACGGGTTAAGTAGTCGATTTGCAAAACCTCAA
AAAGTATGTGGACTTCTTTCCCAATACACTGCTCCCATCCCGAATAGTAGCCTCTACCGTGGCGGCGCCGCCCTGCGTTT
TCAA---AAATCAAAGCGACAACAACGGGAAAGGACTGGGAAAGAAATGCGAAAAGACGGAAAATAGAGAAGTAAAAGAT
AAAATAAAATGTTCCTGAGATTTTTCATGAAACTTTGAAGTAGAAAGAAAACCAGAAAATAGTAAGGGAAAAGAAGAAAA
ACA-AGGAAAAGA--AAAAGGGAAATATAAAGATAAAAAACTCGAAAGAGTAAAAAATAAA------CATGATAAAAATG
AATACAAGAAGAAAAGCATATT-AAAAAGAAGCAGA---------AAAAAACAGAAAAGACAAAAATCGAAACACAACCA
TGGTCCCTGTAATAACCAACGAAAACCGCACGAAACGAAATGCACAAAACTCAGGAAAAACCGGGCCGATCGTCCTACTG
GGCCGACGGCCCATGTTGGCGCGCT--TGTAGGCGACTCGCCCGTAGCGCTCGCTGGTCTCTC--------CCATGGCTC
CGCCGCTCTCCGCCGCCCTCCGCCGCCACC---TCCTCCCCCACCGTTTCCCCCTGCTTCCCTCCCGCCACGTTAGCCTC
TCCACCAGCCACTCCTCCTCCGACCAAAGCGACCTCGAGTACGTTCACCCTATCCCCCCTGCCCCCGACGACGACGGCGA
GCTCACCTCCTTCCTCCGTCGCATCTCCCACGCCTCCTCCGCCGCGTCTTCCCCGAAGGACGCCCTCTCCCTCCTTCTTT
CCTCCTCTTCTGGCCCATCGCCGTCCCCTCCCTCCTTCGTCCGCGCGGTGTGGGAACTGCGCCGCGACCCGGAGGCAGCA
GCGCTCGCGCTTCTCTGGGGCGACGAGTGCAGCGCCACGTCCGGCGCTGAGGGGGCGGGGTCCCTGCCGGCCGAGGCGTG
GTACCTGGCCATATGGTCTGCGGGGAGGGCTGGGCGGTTCGACCTGGCGTGGGCGGCCGTGCGGTGGATGCAGCGCCGTG
GGGTGCTGACCCGCCGTGCCATGGTCATCTTGATGGAGAGGTAAGGTCGTATGCTCATGATCTGTCACCATTTTATGATA
TTATTAGGTATAATCAAGCATTTGGCCAGCATAGT----GTACTTTATGATGGTGCTCTTGTAGTACTCTGTTCCGTTGG
CTATGGCTCTAT-AATGTAGGCAAAATTTAGAATTTGTCTCCGTGCATTGCGGTTTAAGGATTTGCCACTCGATGTCTGA
TCAACGGCTTGGTCCAGACCAAATGTGAGTGACTCATATTATTAC-AAGACATAAATTCCCCTAATAAT-AATGTTTGTA
AACCCATTTCC-GTGGGTTGGTTTTAGTTGGTTTGGTTTCTTGGAGTGGTATTGCAGTGAATGTGAGCCAAGGGACTAGG
TATATAACCAGCAACAGAGTAAAGGAGGTGCTTACTT------TACTAGAAATCTCAGTAGATTTGCAATAAAAT----A
CGTACATCATAGCAAAATTGCATTGCACCGATACAAACACTGGTGTGTTAGTGAAGTAG--ACATAATTCTGAGAACAAG
AAAAGGATGATGGTCACACTGGTGAGTTTTCTGCAATGATCCAGTGCTTTAGATTGGGTTTCAGGTAAACAAGGGAAAAG
TA-TGACTGTAGGAGTGAACAGTGAACACAACATTCTGCTGAATAACTTTTGTGACATTCGACATATTTTGTTATGCAAT
GTGCATTGCTTCTATTGTGGTCATAGAAGGG-------------------------------------------------
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-------------------------GGGTGGATGCTTGAGCTATAGGTGCTTAAGTTATTTTGAGAGCTAAAAAAGTGAT
TGCCTGCTTGTAAAAATGTTGTTGACATAAGAAGCTTTATTACTCGTCTTCATAGG-ATATTCTAATCTTCTAGCCATGT
GATGATGATAGTATAGTGAGTGATGATTGACATGTATTGTGTGAGTGCTTGGTTCAATTTACTTTGGTTCGGTTACTTGT
TGTGTTGATGTTTGAAGTTTCAGGAGTGCTCAACTTAGCATCTTGATTATTGAGTGTGGTGTTGTTGCTGTCATAAATCC
TATATTCACGCTTTTAGTGTAATTGATGTGTTGGATGGAACTTATAATTCCCTACATCTGAATCTATTTACTAGCACTGC
TATGGGGCTCCTCTTACATTATCCGATCACTTTCGACATCATAACTGTATTTTGCTTTTGTAATGTGAAGACCAAAGTGA
AAAGAAGCCGTTGCCATTTTAGTACACTAGTTACTGTTACTTTTGGTGTGCCATGCTTCTTTCATTGTAAGGATTTGTTT
ATGAAATTTCAGGTATGCAGCTGCCAATGAAGTGAAGAAAGCAGTCAAGACCTTTGATGTGATGGAGAGGTTTAAAGTGG
AAGTGGACCAAACTGTATTCTATTCCCTTCTTCGTGCTCTTTGCAGAAGTAAAAACATAGAAGATGCTGAAGAGTTGCTT
CTTGCAAGAAGGAAATTTTTCCCACTCACGGCCGAAGGTTTCAATATAATACTTGATGGTTGGTGTAATATCTTCACCGA
TGTGGCCGAAGTAAAGAGGGTTTGGCGAGAAATGTCAAATTGCTGCATTACTCCTGATGGTACATCTTATGCTCTCATGG
TCTGTTGTTTCTCAAAGGTAGGGAACCTTTTTGATACTCTGAGGGTTTACGATGAGATGAAGAAGAGGGGTTGGACTCCT
GGTATTGGTGTCTATAACCAACTTATTTATGTTCTGACAAGAGAGAATTGCATGAAGGATGCAAGAAATGTTCTCAGTAA
AATTGTGGATGAAGGTCTCCAACCGGATGTTGAAACATACAACAGTATTATAGTTCCACTTTGTGAAAGTTGCAAGCTTG
AGGAAGCACGAGAGGTAATGGAAGACATGACAATGAAAGGCATTGTTCCAACCATTTCGACGTACCATGCATTTTTGAAA
CAGGAAGGCATTGACGAAACACTGCAGCTACTGAAGAAAATGAAAGAAGATGGCTGTGGCCCTAACAGCGACACATTTCT
CATGCTCATTGATAAGTTTATCCAATTGAATGAGTCTGGGAATGCTCTGAGGGTGTGGACTGAAATGCGAAGATACGACA
TTAGGCCTGGTTATGCACACTACATGGCAGTGGTCCAAGGTTTGGTTAAACATGGATGCATACCACGAGCTTTAGAGTAT
TATGATGAAATGAAGGCAAATGGTTTTGCTTCGGACCCAATACTTGATAAGGAATTCAGAACTTTTCTATTGGCCAACAG
AGACCATTGGAGAGGAGCAGGCAAATACAATCTTATTCCACAGCATAGCAAACATTCTACAAGACGGACAAGAATTCCGT
AATACATGTGTCACT-------GTTAAGCACGCTTCTGGTGCTTCTTTTGTACGACAAAAAGGTAAATGCAAACAAATGT
GACTGTGAGGTATGTGTGTTCAGTTAGCAAGTTTCTCCTGAATCCTCCTAACTACTCCCTCCGTCCCATAATATAAGAGT
GTTTTTTACACACACTAGTGTCAAAAACACTCTTATATTATGGAACGGAGGGAGTAACAAACATGAAACCGCTAAAGTTC
TCGCCCGAGTTGCTTCTTCTGAAATGATTTGCCTTTGAGGGATGTTTCCATGTCCC-------------ATGTACATGGT
GTAGCTTCAAAAAGACCTATGATAGCCATGGGTTATGGTTCTTATTGTTGTGTGTTTTAAACATGT--TATAATGTGTAA
TCATTTCATATCTATGCCTTCTCAGAATTACAGGTATTGCAGTAGGCAGAGGAGCTGGGATTTTCTTCCCATGTAAGAAA
TCCTGTTAGAGGGTCCTTGATTA------TAGCGATCAAGTAAATAAATCGATAAAAAATAGGCAGAGCCGTTTAGTGAT
TTGATACAATTTTGTTATTTTGCGAAGATTAAGTTGATCACATGAAAAGCA---TACGTTTTACGAGATGAGCAAGTAGG
CTTTTGGATATTGGCAGTGGTTGGCTACAGAATCGGCAAAAGTTACACAGCACCTAGAGAAGCTGGCGTAACAAGTGAAA
AAATGTTATCGTGCAAGACAGCACTTGGACAAAGATT-GGTTTGCCCGGCGGGCAGAATTGGCAAAAGTTGGGAGTCCTG
CAGAGAGAGGAGGTCAGATTAGAGTAGCAATATCAAATGCAGACTTGTTACGCATGGACCTGTTGTTTTTCCTCCGGCGC
ATATCAAAAGCTGAGATGAAAC-TTGATGCCGGTGAAGTGCTTTTCTG--------ATAGAAACTGTTGGTGG-TGCACA
CCTTACGAAAGTGCACCTAGAGGAGTCGAAATATTCTCACGAACTCTTGACATATACCAATCTCTCTCTCTCTCTCTCTC
TCTC
>chr1A_1
CCAAAACCACCTTCCAAGCTCTTAGGGATGATTTCTCGGTTTTGTAAAATTGAGGGGCGAAATACATGATTTTTGTGCCT
CTTTGGATTGTAAGAATTCTGGGCCGTTTCAATCTTAAGAAAAAAGTGGCTATGAAAACCCTTGGATCATAGGATTGGAG
TCACCAAATTTCTATGGAATCATTTCCTATGCCCCCCCT---TCCATAGGATTCTCAACATGAGCACAAACCTCATTTTA
ATTTTCCTCCGAGCAGTCCAAGTCACTTTCCATCTATCTCTCTCTACCCCATCTCATCAATCCTTTTAAATTCATGTGAA
CTAATCAAAGGCACATATTGTGAAATATAATGT-ATTTTTTTCACATTACATGACATCTTAACCCTACGCTTTTCCCC-T
ATTTTTATGG-TTTAAATCCCTACAGTCTAAATAGGCCCTTACAGTTGAGGGGTTAAGTAGTCGGTTTGCAAAACCTCAA
AAAGTATGTGGACTTCTTTCCCAATACACTGCTCCCATCCCGAATAGTAGGCTCTACCGTGGCGGCGTCGCCCTGCGTTT
TCAA---AAACCAAAGCGACAACAATGGGAAAGGACCGGGAAAGAAATGCG-AAAGACGGAAAATAAAGAAGTAAAATGT
AAAATAAAATGTTCCTGAGATTTTTCATGAAACTTTGAAGTAGAAAGAAAACCAGAAAATAGTAAGGCAAAAGAATAAAA
A-A-AGGAAAAGAAAAAAAGGGAAATATAAAGATAAAAAACTCGAAAGAGTAAAA---AAA------CATGATAAAAATG
AATACAAGAAGAAAAACCCACTAAAAAATAAGCAGA---------AAAAAGGA--------AAAAACCGGAACACAACCA
TGGTCTCT---ATAACCAACGAAAACCGCACGAAA---------------------------------------------
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----
>chr1B_370
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--------------------------------------------------ATGACACCTTAACCCTACGCTTTCCCCC-T
ATTTCTACGTTTTTAAATCCCTACGGCCCAAATAGGCCCTTACAGTTGAGGGGTTAAGTAGTCGATTTGCAAAACCTCAA
GTAATATGTGAACTTCTTTCCCAATACACTGCTCCCATCCCAAATAGTAGCCTCTACTGTGGCGGCGCCACTCTGCACTA
AAAAAATAAATTAAAGCTACAACACCGGGAAAGGACTGGGAAAGAAATGCGAAAAGACGTAAAATAAAGAAGTTAAA---
-----AAAATGTTCCTAAGATTTTCCATGAAATTTTTAAGTGGAAAGAAAACCAGAAATTAGTAAGGGAAAAGAAGAAAA
A-AGAGGAAAAGAAAAAG-GGGAAATATAAAGATGAAAAACTAGAAAGAGTAAAA---AAAAGTAAACATGATGAAAATG
AATATAAGAAGAAAACCCCATTAAAAAAGAAGCAGGAAAAAACAGAAAATAAA--------AAAAATCGAAACACAACCA
TGGTCCCTGTAATAACCAACGAAAACCGCACGAAACGAAATGCACAAAACTCAGGAAAAACCGGGCCGATCGTCCTACTG
GGCCGCCGGCCCATGTTGGCGCGCCTCTGTAGGCGACTCGCCCGTAGCGCTCGCTGGCCTCTC--------CCATGGCGC
AGCTGCTCGCCGCCGCCCTCCGCCGCCACCTCCTCCTCCCCCACCGTTTCCCCCTCCTTCCCTCCCGCCACGTTAGCCTC
TCCACCATCCACTCCTCCTCCGACCAAAGCGACATCGAGTACGGTCACCCTATCCCCCCTGCCCCCGACGACGACGGCGA
GCTCACCTCCTTCCTCCGTCGCATCTCCCACGCCTCCTCCGTCGCGTCTTCCCCGAAGGACGCCCTCTCCCTCCTACTTT
CCTCCTCTTCTGGCCCATCGCCGTCCTCCCCCTCCCTCGTCCGCGCGCTGTGGGAACTGCGCCGCGACCCGGAGGCAGTA
GCGCTCGCGCTTCGCTGGGGCGACGAGTGCAGCGCCACGTCCGGCGCTGAGGGGGCAGGGTCCCTGCCGGCGGAGGCGTG
GCACCTGGCCATATGGTCTGCGGGGAGGGCTGGGCGGTTCGACCTCGCGTGGGCGGCCGTGCGGCGGATGCAGCGCCGTG
GGGTGCTGACCCGCCGTGCCATGGTCATCTTGATGGAGAGGTAAGGTCGTATGCTCATAATCTTTCACCATTTCATGATA
TT---AGGTGTAATCAAGCATTCGACCAGCATAGTACTAGTACTTTATGATAGTGCTCTTGTAGAACTCTGTTCCATTGG
CTATGGCTCTATAAATGTAGGCAAAATTTAGAATTTATCTCCGTGTATTGCGGTTTAAGGATTTGCCACTCAGTTTAGAA
TTCTCTCTT--------GCCAAATGTAAGTGACTCATATTATTAG-AAGACATAAATTCCCCTAATAAATAATGTTTGTA
AACCCATTTTGAGTGGTTTGGTTTCAGTTGGTTTGGTTTCTTGGAGTGGTATTGCAGTGAATGTGAGCAAAGGGACTAGG
TATATGACCAGCAACAGAGTAAAGGAAGCACTTACTTATGGCATACTAGAAATCTCAGTAGATTTGCAATAAAAT----A
C----ATCATAGCAAAATTGCATTGCACCGATACAAACACTGGTGTGTTAGTGAAGTGGACACATAACTCTGAGAACAAG
TAAAGGATTATGGTCACACTGGTGAGTTTTCTGCAATGATCCAGTGCTTTAGATTGGGTTTCAGGTAAACAGGGGAAAAG
TACTGACTGTAGGAGTGAACAGTGAACACAACATTCTGCTGAATAACTTTTGTGACATTCGACATATTTTGTTATGCCAT
GTGCATTGCTTCTATTGTGGTCATAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTGCTTGAGCTATAGGTGCTTAAGTTATTTTGAGAGCTAAAAAAGTGAT
TGCCTGCTTGTAAAACTGTTGTTGACATAAGAAGCTTTATGGCTCGTCTTCATAGGAATATTCCAATCTTTTAGCCATGT
GATGATGATAGTATAGTGAGTGATGATTGACATGTATTGTGTGAGTGCTTGGTTCAATTTACTTTGGTTAAGTTACTTGT
TGTGTTGATGTTTGAAGTTTCAGGAGTGCTAAACTTAGCATCTGGATTATTGAGTTTGGTGTTGTTGCTGTCATAAATCC
TATATTCTCACTTTTAGTGTAATTGATGTGTTGGATGGAACATATAATTCCCTACATCTGAATCTATTTACTAGCACTGC
TATGGGGCTCCTCTTACATTATCCGATCACTTTTGACATCATAACTGTATTTTGCTTTTGTAATGTGAAGACCAAAGTGA
AAAGCAGCCGTTGCCATTGTAGTACACTAGTTACTGCTACTATTTGTGTCCCATGCTTCTTTCATTGTAAGGATTTCTTT
ATGAAATCTCAGGTATGCAGCTGCCAATGAAGTGAAGAAAGCAGTCAAGACCTTTGATGTGATGGAGAGGTTTAAAGTGG
AAGTGGACCAATCTGTATTCTATTCCCTTCTTCGTGCTCTTTGCAGAAGTAAAAACATAGAAGATGCTGAAGAGTTGCTT
CTTGCAAGAAGGAAATTTTTCCCACTCACGGCCGAAGGTTTCAATATAATACTTGATGGTTGGTGTAATATCTTCACCGA
TGTGGCTGAAGTAAAGAGGGTTTGGCGAGAAATGTCAAATTGCTGCATTACTCCTGATGGTACGTCTTATGCTCTCATGG
TCTGTTGTTTCTCAAAGGTAGGGAACCTTTTTGATACTCTGAGGGTTTACGATGAGATGAAGAAGAGGGGTTGGACTCCT
GGTATTGGTGTCTATAACCAACTTATTTATGTTCTGACAAGAGAGAATTGCATGAAGGATGCAAGAAATGTTCTCAGTAA
AATTGTGGATGAAGGTCTCCAACTGGATGTTGAGACATACAACAGTATCATAGTTCCACTTTGTGAAAGTTGCAAGCTTG
AGGAAGCACGGGAGGTACTGGAAGACATGACAATGAAGGGCATTGTTCCAACCATTTTGACGTACCATGCATTTTTGAAA
CAGGAAGGCATTGACGAAACACTGCAGCTACTGAAGAAAATGAAAGAAGATGGCTGTGGCCCTAACAGTGACACATTTCT
CATGCTCATTGATAAGTTTATCCAATTGAATGAGTCTGGGAATGCTCTGAGGGTGTGGACTGAAATGCGAAGATACGACA
TTAGGCCTGGTTATGCACACTACATGGCAGTGGTCCAAGGTTTGATTAAACATGGATGTATACCACGAGCTTTAGAGTAT
TATGATGAGATGAAGGGAAATGGTTTTGCTTCGGACCCAATACTTGATAAGGAATTCAAAACTTTTCTGTTGGCCAACAG
AGACCACTGGAGAGGAGCAGGCAAATACAATCTTATCCCACAGCGTATCAAACATTCTACAAGACGGACAAGAATTCCAT
AATACATGTGTCACTGTTAACAGTTAAGCACGCTTCTAGTGCTTCTTTTGTACGACAAAATGGTAAATGCAAACAAATGT
GATTGTGAGGTATGTGTGTTCAGTTAACAAGTTGCTCCTGAATCCTCCTAACTA--------------------------
--------------------------------------------------------ACGAACATGAAACCGCTAAAGTTC
TCGCCCGAGTTGCTTCTTCTGAAATGATTCGCTCTCGAGGGATTTTCCTCAGGGGCCGAGTTTCGAAAAATGTACATGAT
GTAGCGTCAAAAGCTCCTATGATTGCCATGGGTCATGGTTCTTAGTGTTCTGCGTTTTAAACATGTTATATAATGTGTGA
TCATTTCATATCTATGGCTTCCCAGAATTACAGGTATTGCAGTAAGCAGAGGAACTGGGATTTTATTCCCATGTAAGAAA
TCCTGTTAGAGGGTCCTTGATTAC------AGCGATCAACTAAACAAATCGGT-AAAAATAGGCAGAGCCATTTAGTGAT
TTAATACATTTTTGTTATTTTGCGAAGATTAAGTTGGTCACATGAAAAGCATAGTACGTTTTACGAGATGAGCAAGTAGG
CTCTTGGATATTTGCAGTGGTTGGCTTCAGAATCGGCAAAAGCTACACAGTTCC------AGCTCGCGTAACAAGTGACA
AAATGTTATCGTGCAAGACAGCACTTGGACAAAGATTTGGTTTGCCCGGCGGGCAGAATTGGCAAAAGTTGGGAGGCCTG
CAAAGACAGGAGGTCAGGTTAGAGTAGCAAACGCAAACTTGTTCCCGCATGCACCTC-----TTGTTTTTTCCCCTGTGC
ATATCTAAAGCTGAGATGAAACTTTAGTGCCGGTGAAATGTTTTACTACTAATATAATAGAAACTGTTGGTGG-TGTGCA
CCTTGAGAAAGTGCATCTAGAGGAGTCGAAATATTC--------------------------------------------
----
>chr1A_900
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------------------------------------------CACAAAACTCAGCAAAAATCGGGCCGATCGTCCTACTG
GGCCGCTGGCCCATGTTGGCG-----------------CGCCCGTAGCGCTCGCTGGCCTCTCTCTCTCTCCCATGGCGC
CGCAGCTCGCCGCCGCCCTCCGCCGCCACCTCCTCCTCCCCCACCGTTCCCCCCTCCTTCCCTCCCGCCACGTTAGCCTC
TCCGTCAGCCACTCCTCCTCCGACCAAAGCGACATCGAGTACGCTCACCCTATCCCCCCCGCCCCCGACGACGACGGCGA
GCTCACCTCCTTCCTCCGTCGCATCTCCCACGCCTCCTCCGTCGCGTCTTCCCCGAAGGACGCCCTCTCCCTCCTTCTTT
CCTCCTCTTCTGTCCCATCGCCGTCCCCTCCCTCACTCGTCCGCGCGCTGTGGGAACTGCGCCGCGACCCGGAGGCAGCA
GCGCTCGCGCTTCGCTGGGGCGACGAGTGCAGCGCCACGTCCGGCGCTGAGGGGGCGGGGTCCCTGCCGGCCGAGGCGTG
GCACCTGGCCATATGGTCGGCGGGGAGGGCTGGGCGGTTCGACCTCGCGTGGGCGGCCGTGCGGCGGATGCAGCGCCGTG
GGGTGCTGACCCGCCGTGCCATGGTCATCTTGATGGAGAGGTAAGGTCGCATGCACATAATCTTTCACCATTTCATGATA
TTATTAGGTGTAATCAAGCATTTGGCCAGCATAGTACTAGTACTTTATGATAGTGCTCTTGTAGAACTATGTTCCGTTGT
CTATGGCTCTAT-AATGTAGGCAAAATTTAGATTTTGTCTCGGTGTATTGCGGTTTAAGGATTTGCCATTCGGTGTCTGA
TCGACGTCTGGGTCCAGGCCAAATGTAAGCAACTCATATTATTACAAAGACATAAATTCCCCTAATAAA-AATGTTTGTA
AACCCATTTTGAGTGG----------GTTGGTTTGGTTTCTTGGAGTGGTATTGCAGTGAATGTGAGCCAAGGGACTAGG
TATATAACCAGCAACGGAGTAAAGGAGGTGCTTACTT------TACTAGAAATCTCAGTAGATTTGCAATAAAATACGTA
C----ATCATAGCAAAATTGCATTGCACCGATACAAACACTGGCGTGTTAGTGAAGTAGACACATAATTCTGAGAACAAG
AAAAGGATGATGGTCACACTGGTGAGTTTTCTGCAATGATCCAGTGCTTTAGGTTGGGTTTCAGGTAAACAGGGGAAAAG
TAC-GACTGTAGGAGTGAACAGTGAACACAACATTCTGCTGA-TAACTTTTGTGGCATTCGACATATTTTGTTATGCAAT
GTGCATTGCTTCTATTGTGGTCATAGAAGGG-------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------GGGTGGATGCTTGAGCTATAGGTGCTTAAGTTATTTTGAGAGCTAAAA-AGTGAT
TGCCTGCTTGCAAAAATGTTGTTGACATAAGAAGTTTTATGACTCGTCTTCATAGG-ATATTTTAATCTTCTAGCCATGT
GATGATGATAGTATAGTGAGTGATGATTGACATGTATTGTGTGAGTGCTTGGCTGAATTTACTTTGGTTCAGTTACTTGT
TGTGTTGATGTTTGAAGTTTCAGGAGTGCTAAACTTAGCATCTTGATTATTGAGTGTGGTGTTGTTGCTGTCATAAATCC
TATATTCGCGCTTTTAGTGTACTTGATGTGTTGGATGGAACATATAATTCCCTACATCTGAATCTATTTACTAGCGCTGC
TATGGGGCTCCTCTTACATTATCGGATCACTTTTGACATCATAACTGTATTTTGCTTTTGTAATGTGAAGACCAAAGTGA
AAAGCAGCCATTGCCATTGTAGTAAACTAGTTACTGCTACTATTTGTGTCCCATGCTTCTTTCATTGTAGGGATTTGTTT
ATGAAATTTCAGGTATGCAGCTGCCAATGAAGTGAAGAAAGCAGTCAAGACCTTTGATGTGATGGAGAGGTTTAAAGTGG
AAGTGGACCAAACTGTATTCTATTCCCTTCTTCGTGCTCTTTGCAGAAGTAAAAACATAGAAGATGCCGAAGAGTTGCTT
CTTTCAAGAAGGAAATTTTTCCCACTCACGGCCGAAGGTTTCAATATAATACTTGATGGTTGGTGTAATATCTTCACCGA
TGTGGCCGAAGTAAAGAGAGTTTGGCGAGAAATGGCAAATTGCTGCATTACTCCTGATGGTACGTCTTATGCTCTCATGG
TCTGTTGTTTCTCAAAGGTAGGGAACCTTTTTGATACTCTGAGGGTTTACGATGAGATGAAGAAGAGGGGTTGGACTCCT
GGTATTGGTGTCTATAACCAACTTATTTATGTTCTGACAAGAGAGAATTGCATGAAGGATGCAAGAAATGTTCTCAGTAA
AATTGTGGATGAAGGTCTCCAACCCGATGTTGAAACATACAACAGTATTATAGTTCCACTTTGTGAAAGTTGCAAGCTTG
AGGAAGCACGAGAGGTGATGGAAGACATGACAATGAAGGGCATTGTTCCAACCATTTTGACGTACCATGCATTTCTGAAA
CAGGAAGGCATTGACGAAACACTGCAGCTACTGAAGAAAATGAAAGAAGATGGCTGTGGCCCTAACAGCGACACATTTCT
CATGCTCATTGATAAGTTTATCCAATTGAATGAGTCTGGAAATGCTCTGAGGGTGTGGACTGAAATGCGAAGGTACGACA
TTAGGCCTGGTTATGCACACTACATGGCAGCGGTCCAAGGTTTGATTAAACATGGATGCATACCACGAGCTTTAGAGTAT
TATGATGAAATGAAGGCAAATGGTTTTGCTTCGGACCCAATACTTGATAAGGAATTCAAAACTTTTCTACTGGCCAACAG
AGACCACTGGAGAGGAGCAGGCAAATACAACCTTATTCCACAGCGTATCAAACATTCTACAAGACGGACGAGAATCCCGT
AATACATGTGTCACT-------GTTAAGCACGCTTCTAGTGCTTCTTTTGTACGACAAAAAGGTAAATGCAAACAAATGT
GACTGTGAGGTATGTGTGTTCAGTTAACAAGTTGCTCCTGAATCTTCATAACTA--------------------------
--------------------------------------------------------ACAAACATGAAACCGCTAAAATTC
TCGCCCGAGTTGCTTCTTCTGAAATGATTCGCTCTTGAGGGATTTTCCTCAGGGGCTGAGTTTCGAAAAATGTACATGGT
GTAGCATCAAAAGGTCCTATGATTGCCATGGGTCATGGTTCTTATTGTTCTGTGT----------T--TATAATGTGTGA
TCATTTCGTATCTATGCCTTCCCAGAATTACAGGTATTGCAGTAGGCAGAGGAACTGGGATTTTCTTCCCATGTAAGAAA
CCCTGTTAGAGGGTCATTGATTATGATTATAGCGATCAACTAAATAAATCGGT-AAAAATAGATAGAGCCATTTAGTGAT
TTAATACATTTTTGTTATTTTGTGAAGATTAAGTTGGTCACATGAAAAGCATA---CGTTTTACAAGATGAGCAAGTAGG
CTTCTGGATATTGGCAGTGGTTGGCTACAGAATCGGCAAAAGTTACACAGCACATAGAGAAGCTGGCGTAACAAGTGACA
AAATCTTATCGTGCAAGACAGCACTTGGACAAAGATT-GGTTTGCCCGGCGGGCAGAATTGGCAAAAGTTGGCAGTCCTG
CAAAGAGAGGAGGTCAGGTTAGAGTAGCAAACGCAAACTTGTTCCTGCATGCACCTC-----TTGTTTTTCCTCCGGCGC
ATATCTAAAGCTGAGATGAAACTTTAGTGCCGGTGAAATATTT---TACTAATATAATAGAAACTGTTGGTGGGTGCACA
CCTTGAGAAAGTGCATCTCGAGGAGTACAAATATT---------------------------------------------
----
>SNPs
--------------------S-------S-----S------------------------------------------S--
------------------S-----------------------------S-------------------------------
------------------------------S-----S-SSSS--------------------------------------
----------S--S----------------SS----------------------------------S------S----S-
-----S--------------S-S----------S--------------------------------------S-----S-
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S----------SS-
--------------------------------------------------------------------------------
-S-----------------------------------------------------SSS----------------------
---------------S-SS--------------------------------S-SSSSSSSS-------------------
--------------------------------------------------------------------------------
-----S------------------S--------------------------------S--------------------S-
---S----S----------------------------------------------S------------------------
---------------------------------S---------S------------------------------------
-----------------------------------------S--------------------------------------
-----------------------------------S-----------S--------------------------------
-------------S------------------------------------------------------------------
-S-------------------------------------------S------------------S---------------
----------------------------------------------------------S----S---------S------
---------S-----------------------------------------S------------S---------------
---------------------------------------------S--------------------------S-------
--S---S--S-------S--------S-----------------------------------------S-----------
---------SS-----S-------S-------------------------------------------------------
--------------------------------------------------------------------------------
-SSSS---------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
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----------------------------------------S---------------------------------------
----------------------------------------------------------------------S---------
------------------------------S-------------------------------------------------
-------S---------------------------------S--------------------------------------
---------------------------------S----------------------------------------------
----S-------------S-----------------S----S--S----S------------------------------
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---------------------------------------------------------------S----------------
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-------------------------------------S-------------------S----------------------
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--------------------------------------------S-----------------------------------
----------------------------------------------------------S---------------------
------S-------------------------------------S--S--------------------------------
-------------------------------------S------------------------------------------
--------------------------S------S--------------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------
-----------------------------S--SS---------S--S-SSS-SSS-------------------------
-----S------S-S--------S---------S---------------S----------------------------S-
---------------------S-------------------------------S--------------------------
---------------------------------------S-----------S-S----------------S---------
--S-----S---------------------------S-------------------------------------------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
--S--------------S------------SSS----SSSSSS-S--SSSSSSSSSSSSSSS------------------
-----S-------------------SS----------S--S---S--S--------------------------------
----SS---------S--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_21
CCAAAACCACCTTCCAAGCTT-----------------------------------------------------------
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>reverse_1442
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-TACCTGGCCATATGGTCTGC-----------------------------------------------------------
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>forward_1164
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------------------------CAAAGCGACCTCGAGTACGT------------------------------------
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>reverse_2965
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----AAGCCGTTGCCATTTTAGTACAC-----------------------------------------------------
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>forward_1778
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------------------------------------------------------------------------------GA
TCAACGGCTTGGTCCAGA--------------------------------------------------------------
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>reverse_4007
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------TTGGAGAGGAGCAGGCAAAT------------------------------------------------------
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>forward_1865
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----CCATTTCCGTGGGTTGGTTTT-------------------------------------------------------
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>reverse_4048
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-----------------------------------------------GCAAACATTCTACAAGACGGACA----------
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>forward_2979
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-----------------------------------------------------------------------------TGA
AAAGAAGCCGTTGCCATTT-------------------------------------------------------------
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>reverse_4986
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-------------------------GATGCCGGTGAAGTGCTTTT-----------------------------------
--------------------------------------------------------------------------------
----
