Multiple sequence alignment - TraesCS1D01G225400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G225400 chr1D 100.000 4573 0 0 1 4573 314010106 314005534 0.000000e+00 8445.0
1 TraesCS1D01G225400 chr1B 93.677 4270 174 51 2 4214 424079749 424075519 0.000000e+00 6301.0
2 TraesCS1D01G225400 chr1A 92.149 4254 217 41 2 4214 394303023 394298846 0.000000e+00 5897.0
3 TraesCS1D01G225400 chr3A 94.540 348 19 0 4226 4573 57468703 57468356 5.210000e-149 538.0
4 TraesCS1D01G225400 chr5A 94.203 345 20 0 4229 4573 558232567 558232223 1.130000e-145 527.0
5 TraesCS1D01G225400 chr5A 92.816 348 25 0 4226 4573 537746468 537746815 5.280000e-139 505.0
6 TraesCS1D01G225400 chr2A 93.333 345 22 1 4229 4573 105412981 105412638 4.080000e-140 508.0
7 TraesCS1D01G225400 chr2A 90.778 347 31 1 4227 4573 687497225 687496880 3.220000e-126 462.0
8 TraesCS1D01G225400 chr2D 91.931 347 28 0 4227 4573 545502328 545502674 1.910000e-133 486.0
9 TraesCS1D01G225400 chr5B 91.092 348 31 0 4226 4573 640425639 640425986 5.360000e-129 472.0
10 TraesCS1D01G225400 chr5B 91.066 347 31 0 4227 4573 704833343 704833689 1.930000e-128 470.0
11 TraesCS1D01G225400 chr4A 91.092 348 30 1 4227 4573 54399403 54399056 1.930000e-128 470.0
12 TraesCS1D01G225400 chr5D 84.507 71 11 0 432 502 317328370 317328300 2.280000e-08 71.3
13 TraesCS1D01G225400 chr2B 86.207 58 7 1 434 491 76024525 76024581 1.370000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G225400 chr1D 314005534 314010106 4572 True 8445 8445 100.000 1 4573 1 chr1D.!!$R1 4572
1 TraesCS1D01G225400 chr1B 424075519 424079749 4230 True 6301 6301 93.677 2 4214 1 chr1B.!!$R1 4212
2 TraesCS1D01G225400 chr1A 394298846 394303023 4177 True 5897 5897 92.149 2 4214 1 chr1A.!!$R1 4212

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 526 1.130613 GATGTGCGTTCAGTGCGAC 59.869 57.895 0.00 0.0 34.24 5.19 F
1195 1233 0.105039 CATGTAAGCTCCCCCTCGTC 59.895 60.000 0.00 0.0 0.00 4.20 F
1420 1458 0.811616 CTGCGCCAATCACCTAGGTC 60.812 60.000 12.84 0.0 0.00 3.85 F
2941 3007 0.104934 ATACCCTACCCAGGCAGAGG 60.105 60.000 0.00 0.0 41.08 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1669 1708 0.719465 CGCACGCGGAAATAGAGTTT 59.281 50.000 12.47 0.0 35.56 2.66 R
2038 2077 1.067354 GCCTTGCCTCTTGGAACATTG 60.067 52.381 0.00 0.0 39.30 2.82 R
3389 3457 0.179153 CAAGCGACTCAGCGATCTCA 60.179 55.000 0.00 0.0 43.00 3.27 R
4282 4356 0.036952 AGTGACGAGCCTGATGGTTG 60.037 55.000 0.00 0.0 35.27 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 66 8.978564 TTAGTGACGTCGGTAATATTTTGTTA 57.021 30.769 11.62 0.00 0.00 2.41
113 118 3.270027 TCGATATGTCTGGTTGCAAAGG 58.730 45.455 0.00 0.00 0.00 3.11
190 195 7.434492 TGGCACTAGTCTAGACTTAATTATGC 58.566 38.462 29.57 24.69 42.54 3.14
366 379 1.665679 GCGGGAGACAATGTACATGTG 59.334 52.381 9.63 11.95 0.00 3.21
418 431 6.908284 GCAACTATTGTAAACAACGAACTGAA 59.092 34.615 0.00 0.00 38.86 3.02
426 439 6.749578 TGTAAACAACGAACTGAACGTAACTA 59.250 34.615 0.00 0.00 43.16 2.24
468 481 4.561326 GCTTAGCATTGGTGGTCACATTTT 60.561 41.667 0.00 0.00 37.28 1.82
473 486 4.309099 CATTGGTGGTCACATTTTTCTGG 58.691 43.478 3.40 0.00 0.00 3.86
481 494 7.545615 GGTGGTCACATTTTTCTGGATTTATTC 59.454 37.037 3.40 0.00 0.00 1.75
513 526 1.130613 GATGTGCGTTCAGTGCGAC 59.869 57.895 0.00 0.00 34.24 5.19
514 527 2.227968 GATGTGCGTTCAGTGCGACC 62.228 60.000 0.00 0.00 34.24 4.79
541 564 4.685924 ACTTCAAAGTCATTTGTGGCAAG 58.314 39.130 0.00 0.95 45.06 4.01
556 579 6.403866 TGTGGCAAGTTTGTCAATCTTAAT 57.596 33.333 8.27 0.00 45.39 1.40
585 608 6.664714 ACTCAGTCTCTAGTAGCCTTCATAA 58.335 40.000 0.00 0.00 0.00 1.90
690 722 7.290842 GGCAAAGAAAAGCTATTTTTAGTTGC 58.709 34.615 15.01 15.01 45.98 4.17
696 728 9.816354 AGAAAAGCTATTTTTAGTTGCAAAAGA 57.184 25.926 0.00 0.00 39.06 2.52
767 800 2.013286 CGTTGTTAACACGCAGTTCC 57.987 50.000 8.07 0.00 41.61 3.62
886 921 3.810896 CTGCCCTTTTACGGCCGC 61.811 66.667 28.58 6.54 46.48 6.53
922 958 1.610886 CGACCTCCCAAAACTTCCCTC 60.611 57.143 0.00 0.00 0.00 4.30
1191 1229 0.325296 TCGACATGTAAGCTCCCCCT 60.325 55.000 0.00 0.00 0.00 4.79
1195 1233 0.105039 CATGTAAGCTCCCCCTCGTC 59.895 60.000 0.00 0.00 0.00 4.20
1239 1277 1.667724 CTCGATCTGGCGCTGATTTTT 59.332 47.619 7.64 0.00 0.00 1.94
1410 1448 2.939103 GACACTTAAGATCTGCGCCAAT 59.061 45.455 10.09 0.00 0.00 3.16
1420 1458 0.811616 CTGCGCCAATCACCTAGGTC 60.812 60.000 12.84 0.00 0.00 3.85
1452 1491 6.207417 TGTTTCCTCAGATTTTGCTCCTTTAG 59.793 38.462 0.00 0.00 0.00 1.85
1467 1506 2.159226 CCTTTAGTTCCGATCGCTCAGT 60.159 50.000 10.32 0.79 0.00 3.41
1616 1655 2.154854 CAGACTTTGCTGACGGAGAA 57.845 50.000 0.00 0.00 38.14 2.87
1669 1708 2.030185 GCACCGTTGAGAGTGAGTTCTA 60.030 50.000 0.00 0.00 36.01 2.10
1687 1726 3.184541 TCTAAACTCTATTTCCGCGTGC 58.815 45.455 4.92 0.00 0.00 5.34
1734 1773 5.455326 GGTTGGATAACATGCTAGATCACCT 60.455 44.000 0.00 0.00 38.58 4.00
1786 1825 4.960938 TGCTTTGTGAGACACTAGTGAAT 58.039 39.130 29.30 16.26 35.11 2.57
1788 1827 4.390297 GCTTTGTGAGACACTAGTGAATCC 59.610 45.833 29.30 17.38 35.11 3.01
1876 1915 5.462398 AGCAATTTAGTATTTACGAGGCTCG 59.538 40.000 33.42 33.42 46.93 5.03
2024 2063 2.293246 TGATTGGGGGTAGGTGGATTT 58.707 47.619 0.00 0.00 0.00 2.17
2038 2077 5.641155 AGGTGGATTTGGTATAATAAGGGC 58.359 41.667 0.00 0.00 0.00 5.19
2041 2080 6.496911 GGTGGATTTGGTATAATAAGGGCAAT 59.503 38.462 0.00 0.00 0.00 3.56
2112 2151 5.577945 CCACAACCTATCATTGTTTTCATGC 59.422 40.000 0.00 0.00 38.22 4.06
2135 2174 5.687285 GCGACTCTTGATGTTTGTGAATTTT 59.313 36.000 0.00 0.00 0.00 1.82
2209 2258 8.826710 TCATAATATCATGTCTCAACGGTTTTC 58.173 33.333 0.00 0.00 0.00 2.29
2310 2359 7.925043 TTTAATTCCAGTTGCCGAGTATTTA 57.075 32.000 0.00 0.00 0.00 1.40
2345 2395 4.658901 AGTATTTCCAGTGGTAGGGTATGG 59.341 45.833 9.54 0.00 0.00 2.74
2346 2396 2.953093 TTCCAGTGGTAGGGTATGGA 57.047 50.000 9.54 0.00 38.26 3.41
2406 2456 0.608856 TGTGGGTCGCTGCAATCAAT 60.609 50.000 0.00 0.00 0.00 2.57
2565 2618 4.114794 GCCTGATTTGTGATAAATGGTGC 58.885 43.478 0.00 0.00 0.00 5.01
2576 2629 1.396653 AAATGGTGCATGCTAGCTCC 58.603 50.000 20.33 13.16 45.82 4.70
2585 2646 1.976132 ATGCTAGCTCCGCCACACAT 61.976 55.000 17.23 0.00 0.00 3.21
2679 2740 7.985752 AGGCATATACTGTCTTGTTTAACCTAC 59.014 37.037 0.00 0.00 35.93 3.18
2736 2797 0.614812 TCATCCAAGTAGCAGCTGCA 59.385 50.000 38.24 22.31 45.16 4.41
2737 2798 0.731417 CATCCAAGTAGCAGCTGCAC 59.269 55.000 38.24 30.54 45.16 4.57
2776 2840 1.651987 TTGCTACTTATGGCTGTCGC 58.348 50.000 0.00 0.00 32.44 5.19
2818 2884 3.176552 ACATCTCTCCTGCAAATCTCG 57.823 47.619 0.00 0.00 0.00 4.04
2875 2941 2.449137 AGGGAGCCTTTGGATCATTG 57.551 50.000 4.23 0.00 40.28 2.82
2887 2953 2.846206 TGGATCATTGGCTCACCTAGTT 59.154 45.455 0.00 0.00 36.63 2.24
2888 2954 3.266772 TGGATCATTGGCTCACCTAGTTT 59.733 43.478 0.00 0.00 36.63 2.66
2889 2955 4.473196 TGGATCATTGGCTCACCTAGTTTA 59.527 41.667 0.00 0.00 36.63 2.01
2890 2956 4.816925 GGATCATTGGCTCACCTAGTTTAC 59.183 45.833 0.00 0.00 36.63 2.01
2891 2957 4.216411 TCATTGGCTCACCTAGTTTACC 57.784 45.455 0.00 0.00 36.63 2.85
2941 3007 0.104934 ATACCCTACCCAGGCAGAGG 60.105 60.000 0.00 0.00 41.08 3.69
3067 3133 1.181741 TGCCGTCAGAAGAGAGCTGT 61.182 55.000 0.00 0.00 34.98 4.40
3166 3233 5.180271 CCAGGGTTAGCATTAACGTTTAGA 58.820 41.667 5.91 0.00 40.07 2.10
3345 3413 3.449018 TGTCTCTGCTAATGACTCCCTTC 59.551 47.826 0.00 0.00 0.00 3.46
3346 3414 3.704061 GTCTCTGCTAATGACTCCCTTCT 59.296 47.826 0.00 0.00 0.00 2.85
3347 3415 4.161377 GTCTCTGCTAATGACTCCCTTCTT 59.839 45.833 0.00 0.00 0.00 2.52
3389 3457 9.120538 TGCAAGAAGTTTAAAGACTTAGTTGAT 57.879 29.630 13.75 0.00 39.84 2.57
3500 3568 2.605580 CGAAAGCAAACCTGAGGAAAGC 60.606 50.000 4.99 5.54 0.00 3.51
3603 3671 2.104253 CGCCCGTCACAATGGTACC 61.104 63.158 4.43 4.43 0.00 3.34
3651 3719 1.489230 AGTTTGTCGGTCCTTCCTGTT 59.511 47.619 0.00 0.00 0.00 3.16
3742 3811 0.543749 CAGAGTCCATCTTCACCCCC 59.456 60.000 0.00 0.00 35.47 5.40
3743 3812 0.119155 AGAGTCCATCTTCACCCCCA 59.881 55.000 0.00 0.00 32.99 4.96
3928 3997 4.339247 GCTGGTTATGGATTGCATACAACT 59.661 41.667 0.00 0.00 38.99 3.16
3929 3998 5.163519 GCTGGTTATGGATTGCATACAACTT 60.164 40.000 0.00 0.00 38.99 2.66
3930 3999 6.449635 TGGTTATGGATTGCATACAACTTC 57.550 37.500 0.00 0.00 38.99 3.01
3985 4055 7.685155 GCATTTGATATGCCAGTTCCTTATTGT 60.685 37.037 0.00 0.00 39.01 2.71
4015 4088 1.088340 CATGTGAGAAGCCGCTCCTG 61.088 60.000 0.00 0.00 33.95 3.86
4021 4094 1.590259 GAAGCCGCTCCTGATCGTC 60.590 63.158 0.00 0.00 0.00 4.20
4026 4099 2.105128 GCTCCTGATCGTCGGTGG 59.895 66.667 0.00 0.00 0.00 4.61
4034 4107 2.685387 GATCGTCGGTGGGCAGCTAG 62.685 65.000 0.00 0.00 0.00 3.42
4114 4187 7.822658 ACTGTACAAAAGAAAACTTAGTTGCA 58.177 30.769 0.00 0.00 0.00 4.08
4132 4205 2.874086 TGCATAATCTTGACGGAGCATG 59.126 45.455 0.00 0.00 0.00 4.06
4214 4288 7.313740 ACTATGGCAAGTATCAGATCATCTT 57.686 36.000 0.00 0.00 0.00 2.40
4215 4289 7.743749 ACTATGGCAAGTATCAGATCATCTTT 58.256 34.615 0.00 0.00 0.00 2.52
4216 4290 7.877097 ACTATGGCAAGTATCAGATCATCTTTC 59.123 37.037 0.00 0.00 0.00 2.62
4217 4291 6.244552 TGGCAAGTATCAGATCATCTTTCT 57.755 37.500 0.00 0.00 0.00 2.52
4218 4292 6.656902 TGGCAAGTATCAGATCATCTTTCTT 58.343 36.000 0.00 0.00 0.00 2.52
4219 4293 7.114754 TGGCAAGTATCAGATCATCTTTCTTT 58.885 34.615 0.00 0.00 0.00 2.52
4220 4294 7.613022 TGGCAAGTATCAGATCATCTTTCTTTT 59.387 33.333 0.00 0.00 0.00 2.27
4221 4295 8.465201 GGCAAGTATCAGATCATCTTTCTTTTT 58.535 33.333 0.00 0.00 0.00 1.94
4252 4326 5.689383 TTTTTGCGAGAAACATAGAGCTT 57.311 34.783 0.00 0.00 0.00 3.74
4253 4327 5.689383 TTTTGCGAGAAACATAGAGCTTT 57.311 34.783 0.00 0.00 0.00 3.51
4254 4328 6.795098 TTTTGCGAGAAACATAGAGCTTTA 57.205 33.333 0.00 0.00 0.00 1.85
4255 4329 6.985188 TTTGCGAGAAACATAGAGCTTTAT 57.015 33.333 0.00 0.00 0.00 1.40
4256 4330 6.985188 TTGCGAGAAACATAGAGCTTTATT 57.015 33.333 0.00 0.00 0.00 1.40
4257 4331 6.589830 TGCGAGAAACATAGAGCTTTATTC 57.410 37.500 0.00 0.00 0.00 1.75
4258 4332 6.106003 TGCGAGAAACATAGAGCTTTATTCA 58.894 36.000 0.00 0.00 0.00 2.57
4259 4333 6.593770 TGCGAGAAACATAGAGCTTTATTCAA 59.406 34.615 0.00 0.00 0.00 2.69
4260 4334 7.280876 TGCGAGAAACATAGAGCTTTATTCAAT 59.719 33.333 0.00 0.00 0.00 2.57
4261 4335 7.796197 GCGAGAAACATAGAGCTTTATTCAATC 59.204 37.037 0.00 0.00 0.00 2.67
4262 4336 8.820933 CGAGAAACATAGAGCTTTATTCAATCA 58.179 33.333 0.00 0.00 0.00 2.57
4267 4341 9.860898 AACATAGAGCTTTATTCAATCAAAACC 57.139 29.630 0.00 0.00 0.00 3.27
4268 4342 8.184192 ACATAGAGCTTTATTCAATCAAAACCG 58.816 33.333 0.00 0.00 0.00 4.44
4269 4343 5.954335 AGAGCTTTATTCAATCAAAACCGG 58.046 37.500 0.00 0.00 0.00 5.28
4270 4344 4.494484 AGCTTTATTCAATCAAAACCGGC 58.506 39.130 0.00 0.00 0.00 6.13
4271 4345 4.220602 AGCTTTATTCAATCAAAACCGGCT 59.779 37.500 0.00 0.00 0.00 5.52
4272 4346 4.562789 GCTTTATTCAATCAAAACCGGCTC 59.437 41.667 0.00 0.00 0.00 4.70
4273 4347 4.712122 TTATTCAATCAAAACCGGCTCC 57.288 40.909 0.00 0.00 0.00 4.70
4274 4348 1.988293 TTCAATCAAAACCGGCTCCA 58.012 45.000 0.00 0.00 0.00 3.86
4275 4349 1.533625 TCAATCAAAACCGGCTCCAG 58.466 50.000 0.00 0.00 0.00 3.86
4276 4350 0.109132 CAATCAAAACCGGCTCCAGC 60.109 55.000 0.00 0.00 41.14 4.85
4277 4351 1.586154 AATCAAAACCGGCTCCAGCG 61.586 55.000 0.00 0.00 43.26 5.18
4278 4352 4.404654 CAAAACCGGCTCCAGCGC 62.405 66.667 0.00 0.00 43.26 5.92
4279 4353 4.947147 AAAACCGGCTCCAGCGCA 62.947 61.111 11.47 0.00 43.26 6.09
4280 4354 4.947147 AAACCGGCTCCAGCGCAA 62.947 61.111 11.47 0.00 43.26 4.85
4281 4355 4.722700 AACCGGCTCCAGCGCAAT 62.723 61.111 11.47 0.00 43.26 3.56
4284 4358 3.126879 CGGCTCCAGCGCAATCAA 61.127 61.111 11.47 0.00 43.26 2.57
4285 4359 2.486966 GGCTCCAGCGCAATCAAC 59.513 61.111 11.47 0.00 43.26 3.18
4286 4360 2.486966 GCTCCAGCGCAATCAACC 59.513 61.111 11.47 0.00 0.00 3.77
4287 4361 2.334946 GCTCCAGCGCAATCAACCA 61.335 57.895 11.47 0.00 0.00 3.67
4288 4362 1.660560 GCTCCAGCGCAATCAACCAT 61.661 55.000 11.47 0.00 0.00 3.55
4289 4363 0.379669 CTCCAGCGCAATCAACCATC 59.620 55.000 11.47 0.00 0.00 3.51
4290 4364 0.322366 TCCAGCGCAATCAACCATCA 60.322 50.000 11.47 0.00 0.00 3.07
4291 4365 0.099968 CCAGCGCAATCAACCATCAG 59.900 55.000 11.47 0.00 0.00 2.90
4292 4366 0.099968 CAGCGCAATCAACCATCAGG 59.900 55.000 11.47 0.00 42.21 3.86
4293 4367 1.226773 GCGCAATCAACCATCAGGC 60.227 57.895 0.30 0.00 39.06 4.85
4294 4368 1.660560 GCGCAATCAACCATCAGGCT 61.661 55.000 0.30 0.00 39.06 4.58
4295 4369 0.379669 CGCAATCAACCATCAGGCTC 59.620 55.000 0.00 0.00 39.06 4.70
4296 4370 0.379669 GCAATCAACCATCAGGCTCG 59.620 55.000 0.00 0.00 39.06 5.03
4297 4371 1.742761 CAATCAACCATCAGGCTCGT 58.257 50.000 0.00 0.00 39.06 4.18
4298 4372 1.667724 CAATCAACCATCAGGCTCGTC 59.332 52.381 0.00 0.00 39.06 4.20
4299 4373 0.904649 ATCAACCATCAGGCTCGTCA 59.095 50.000 0.00 0.00 39.06 4.35
4300 4374 0.037326 TCAACCATCAGGCTCGTCAC 60.037 55.000 0.00 0.00 39.06 3.67
4301 4375 0.036952 CAACCATCAGGCTCGTCACT 60.037 55.000 0.00 0.00 39.06 3.41
4302 4376 1.204704 CAACCATCAGGCTCGTCACTA 59.795 52.381 0.00 0.00 39.06 2.74
4303 4377 1.107114 ACCATCAGGCTCGTCACTAG 58.893 55.000 0.00 0.00 39.06 2.57
4304 4378 0.387202 CCATCAGGCTCGTCACTAGG 59.613 60.000 0.00 0.00 0.00 3.02
4305 4379 1.393603 CATCAGGCTCGTCACTAGGA 58.606 55.000 0.00 0.00 0.00 2.94
4306 4380 1.751351 CATCAGGCTCGTCACTAGGAA 59.249 52.381 0.00 0.00 0.00 3.36
4307 4381 1.464734 TCAGGCTCGTCACTAGGAAG 58.535 55.000 0.00 0.00 0.00 3.46
4308 4382 0.179124 CAGGCTCGTCACTAGGAAGC 60.179 60.000 0.00 0.00 0.00 3.86
4309 4383 1.142097 GGCTCGTCACTAGGAAGCC 59.858 63.158 7.68 7.68 31.46 4.35
4310 4384 1.226717 GCTCGTCACTAGGAAGCCG 60.227 63.158 0.00 0.00 0.00 5.52
4311 4385 1.433879 CTCGTCACTAGGAAGCCGG 59.566 63.158 0.00 0.00 0.00 6.13
4312 4386 2.005960 CTCGTCACTAGGAAGCCGGG 62.006 65.000 2.18 0.00 0.00 5.73
4313 4387 2.050350 CGTCACTAGGAAGCCGGGA 61.050 63.158 2.18 0.00 0.00 5.14
4314 4388 1.817209 GTCACTAGGAAGCCGGGAG 59.183 63.158 2.18 0.00 0.00 4.30
4326 4400 3.863606 CGGGAGGAGAGTCCATCC 58.136 66.667 4.32 4.32 39.61 3.51
4327 4401 1.075970 CGGGAGGAGAGTCCATCCA 60.076 63.158 12.42 0.00 39.61 3.41
4328 4402 0.687757 CGGGAGGAGAGTCCATCCAA 60.688 60.000 12.42 0.00 39.61 3.53
4329 4403 0.833949 GGGAGGAGAGTCCATCCAAC 59.166 60.000 12.42 2.37 39.61 3.77
4330 4404 1.573108 GGAGGAGAGTCCATCCAACA 58.427 55.000 7.25 0.00 39.61 3.33
4331 4405 1.909302 GGAGGAGAGTCCATCCAACAA 59.091 52.381 7.25 0.00 39.61 2.83
4332 4406 2.507471 GGAGGAGAGTCCATCCAACAAT 59.493 50.000 7.25 0.00 39.61 2.71
4333 4407 3.432890 GGAGGAGAGTCCATCCAACAATC 60.433 52.174 7.25 0.00 39.61 2.67
4334 4408 3.184628 AGGAGAGTCCATCCAACAATCA 58.815 45.455 1.57 0.00 39.61 2.57
4335 4409 3.199508 AGGAGAGTCCATCCAACAATCAG 59.800 47.826 1.57 0.00 39.61 2.90
4336 4410 3.054802 GGAGAGTCCATCCAACAATCAGT 60.055 47.826 0.00 0.00 36.28 3.41
4337 4411 4.187694 GAGAGTCCATCCAACAATCAGTC 58.812 47.826 0.00 0.00 0.00 3.51
4338 4412 3.584406 AGAGTCCATCCAACAATCAGTCA 59.416 43.478 0.00 0.00 0.00 3.41
4339 4413 3.679389 AGTCCATCCAACAATCAGTCAC 58.321 45.455 0.00 0.00 0.00 3.67
4340 4414 3.328931 AGTCCATCCAACAATCAGTCACT 59.671 43.478 0.00 0.00 0.00 3.41
4341 4415 3.686726 GTCCATCCAACAATCAGTCACTC 59.313 47.826 0.00 0.00 0.00 3.51
4342 4416 3.012518 CCATCCAACAATCAGTCACTCC 58.987 50.000 0.00 0.00 0.00 3.85
4343 4417 2.859165 TCCAACAATCAGTCACTCCC 57.141 50.000 0.00 0.00 0.00 4.30
4344 4418 2.054021 TCCAACAATCAGTCACTCCCA 58.946 47.619 0.00 0.00 0.00 4.37
4345 4419 2.038952 TCCAACAATCAGTCACTCCCAG 59.961 50.000 0.00 0.00 0.00 4.45
4346 4420 2.224621 CCAACAATCAGTCACTCCCAGT 60.225 50.000 0.00 0.00 0.00 4.00
4348 4422 2.050144 ACAATCAGTCACTCCCAGTGT 58.950 47.619 3.64 0.00 46.03 3.55
4349 4423 2.224378 ACAATCAGTCACTCCCAGTGTG 60.224 50.000 3.64 0.00 46.03 3.82
4350 4424 0.322975 ATCAGTCACTCCCAGTGTGC 59.677 55.000 3.64 0.00 46.03 4.57
4351 4425 0.760567 TCAGTCACTCCCAGTGTGCT 60.761 55.000 3.64 1.62 46.03 4.40
4352 4426 0.320247 CAGTCACTCCCAGTGTGCTC 60.320 60.000 3.64 0.00 46.03 4.26
4353 4427 1.373497 GTCACTCCCAGTGTGCTCG 60.373 63.158 3.64 0.00 46.03 5.03
4354 4428 2.740055 CACTCCCAGTGTGCTCGC 60.740 66.667 0.00 0.00 41.19 5.03
4355 4429 3.233980 ACTCCCAGTGTGCTCGCA 61.234 61.111 1.75 0.00 0.00 5.10
4356 4430 2.267006 CTCCCAGTGTGCTCGCAT 59.733 61.111 1.75 0.00 0.00 4.73
4357 4431 2.046988 TCCCAGTGTGCTCGCATG 60.047 61.111 1.75 0.00 0.00 4.06
4358 4432 3.807538 CCCAGTGTGCTCGCATGC 61.808 66.667 7.91 7.91 0.00 4.06
4359 4433 2.745100 CCAGTGTGCTCGCATGCT 60.745 61.111 17.13 0.00 0.00 3.79
4360 4434 2.330372 CCAGTGTGCTCGCATGCTT 61.330 57.895 17.13 0.00 0.00 3.91
4361 4435 1.577922 CAGTGTGCTCGCATGCTTT 59.422 52.632 17.13 0.00 0.00 3.51
4362 4436 0.728129 CAGTGTGCTCGCATGCTTTG 60.728 55.000 17.13 6.60 0.00 2.77
4380 4454 3.736483 CACAAAGGTGCGCTGAGT 58.264 55.556 9.73 0.00 38.37 3.41
4381 4455 2.024918 CACAAAGGTGCGCTGAGTT 58.975 52.632 9.73 0.00 38.37 3.01
4382 4456 0.317269 CACAAAGGTGCGCTGAGTTG 60.317 55.000 9.73 10.70 38.37 3.16
4383 4457 0.748005 ACAAAGGTGCGCTGAGTTGT 60.748 50.000 9.73 11.37 0.00 3.32
4384 4458 0.381801 CAAAGGTGCGCTGAGTTGTT 59.618 50.000 9.73 0.00 0.00 2.83
4385 4459 1.601903 CAAAGGTGCGCTGAGTTGTTA 59.398 47.619 9.73 0.00 0.00 2.41
4386 4460 1.512926 AAGGTGCGCTGAGTTGTTAG 58.487 50.000 9.73 0.00 0.00 2.34
4387 4461 0.951040 AGGTGCGCTGAGTTGTTAGC 60.951 55.000 9.73 0.00 36.60 3.09
4388 4462 0.951040 GGTGCGCTGAGTTGTTAGCT 60.951 55.000 9.73 0.00 37.78 3.32
4389 4463 0.868406 GTGCGCTGAGTTGTTAGCTT 59.132 50.000 9.73 0.00 37.78 3.74
4390 4464 0.867746 TGCGCTGAGTTGTTAGCTTG 59.132 50.000 9.73 0.00 37.78 4.01
4391 4465 0.868406 GCGCTGAGTTGTTAGCTTGT 59.132 50.000 0.00 0.00 37.78 3.16
4392 4466 1.136224 GCGCTGAGTTGTTAGCTTGTC 60.136 52.381 0.00 0.00 37.78 3.18
4393 4467 2.408050 CGCTGAGTTGTTAGCTTGTCT 58.592 47.619 0.00 0.00 37.78 3.41
4394 4468 2.410053 CGCTGAGTTGTTAGCTTGTCTC 59.590 50.000 0.00 0.00 37.78 3.36
4395 4469 3.393800 GCTGAGTTGTTAGCTTGTCTCA 58.606 45.455 0.00 0.00 36.99 3.27
4396 4470 3.809832 GCTGAGTTGTTAGCTTGTCTCAA 59.190 43.478 0.00 0.00 36.99 3.02
4397 4471 4.453819 GCTGAGTTGTTAGCTTGTCTCAAT 59.546 41.667 0.00 0.00 36.99 2.57
4398 4472 5.639506 GCTGAGTTGTTAGCTTGTCTCAATA 59.360 40.000 0.00 0.00 36.99 1.90
4399 4473 6.401581 GCTGAGTTGTTAGCTTGTCTCAATAC 60.402 42.308 0.00 0.00 36.99 1.89
4400 4474 6.521162 TGAGTTGTTAGCTTGTCTCAATACA 58.479 36.000 0.00 0.00 0.00 2.29
4401 4475 7.161404 TGAGTTGTTAGCTTGTCTCAATACAT 58.839 34.615 0.00 0.00 0.00 2.29
4402 4476 7.118245 TGAGTTGTTAGCTTGTCTCAATACATG 59.882 37.037 0.00 0.00 0.00 3.21
4403 4477 7.161404 AGTTGTTAGCTTGTCTCAATACATGA 58.839 34.615 0.00 0.00 36.38 3.07
4404 4478 7.826252 AGTTGTTAGCTTGTCTCAATACATGAT 59.174 33.333 0.00 0.00 37.44 2.45
4405 4479 7.543947 TGTTAGCTTGTCTCAATACATGATG 57.456 36.000 0.00 0.00 37.44 3.07
4406 4480 7.330262 TGTTAGCTTGTCTCAATACATGATGA 58.670 34.615 0.00 0.00 37.44 2.92
4407 4481 7.823799 TGTTAGCTTGTCTCAATACATGATGAA 59.176 33.333 0.00 0.00 37.44 2.57
4408 4482 6.674694 AGCTTGTCTCAATACATGATGAAC 57.325 37.500 0.00 3.71 37.44 3.18
4409 4483 6.175471 AGCTTGTCTCAATACATGATGAACA 58.825 36.000 0.00 5.94 37.44 3.18
4410 4484 6.827251 AGCTTGTCTCAATACATGATGAACAT 59.173 34.615 0.00 0.00 37.44 2.71
4411 4485 7.012138 AGCTTGTCTCAATACATGATGAACATC 59.988 37.037 0.00 7.73 37.44 3.06
4426 4500 8.463930 TGATGAACATCAAAACTAAGGAAAGT 57.536 30.769 14.00 0.00 44.14 2.66
4427 4501 8.912988 TGATGAACATCAAAACTAAGGAAAGTT 58.087 29.630 14.00 0.00 44.14 2.66
4428 4502 9.185192 GATGAACATCAAAACTAAGGAAAGTTG 57.815 33.333 9.54 0.00 37.48 3.16
4429 4503 8.287439 TGAACATCAAAACTAAGGAAAGTTGA 57.713 30.769 0.00 0.00 39.62 3.18
4430 4504 8.405531 TGAACATCAAAACTAAGGAAAGTTGAG 58.594 33.333 0.00 0.00 39.62 3.02
4431 4505 7.277174 ACATCAAAACTAAGGAAAGTTGAGG 57.723 36.000 0.00 0.00 39.62 3.86
4432 4506 5.767816 TCAAAACTAAGGAAAGTTGAGGC 57.232 39.130 0.00 0.00 39.62 4.70
4433 4507 5.445964 TCAAAACTAAGGAAAGTTGAGGCT 58.554 37.500 0.00 0.00 39.62 4.58
4434 4508 6.597562 TCAAAACTAAGGAAAGTTGAGGCTA 58.402 36.000 0.00 0.00 39.62 3.93
4435 4509 6.710744 TCAAAACTAAGGAAAGTTGAGGCTAG 59.289 38.462 0.00 0.00 39.62 3.42
4436 4510 4.209307 ACTAAGGAAAGTTGAGGCTAGC 57.791 45.455 6.04 6.04 0.00 3.42
4437 4511 2.498644 AAGGAAAGTTGAGGCTAGCC 57.501 50.000 27.19 27.19 0.00 3.93
4438 4512 0.621082 AGGAAAGTTGAGGCTAGCCC 59.379 55.000 30.42 21.06 36.58 5.19
4440 4514 1.004862 GGAAAGTTGAGGCTAGCCCTT 59.995 52.381 30.42 21.83 46.60 3.95
4441 4515 2.360844 GAAAGTTGAGGCTAGCCCTTC 58.639 52.381 30.42 21.84 46.60 3.46
4442 4516 1.362224 AAGTTGAGGCTAGCCCTTCA 58.638 50.000 30.42 24.21 46.60 3.02
4443 4517 1.362224 AGTTGAGGCTAGCCCTTCAA 58.638 50.000 30.42 28.13 46.60 2.69
4444 4518 1.918957 AGTTGAGGCTAGCCCTTCAAT 59.081 47.619 30.43 20.35 46.60 2.57
4445 4519 2.310052 AGTTGAGGCTAGCCCTTCAATT 59.690 45.455 30.43 25.83 46.60 2.32
4446 4520 3.092301 GTTGAGGCTAGCCCTTCAATTT 58.908 45.455 30.43 13.53 46.60 1.82
4447 4521 3.004752 TGAGGCTAGCCCTTCAATTTC 57.995 47.619 30.42 18.17 46.60 2.17
4448 4522 1.943340 GAGGCTAGCCCTTCAATTTCG 59.057 52.381 30.42 0.00 46.60 3.46
4449 4523 1.559682 AGGCTAGCCCTTCAATTTCGA 59.440 47.619 30.42 0.00 43.06 3.71
4450 4524 1.943340 GGCTAGCCCTTCAATTTCGAG 59.057 52.381 24.19 0.00 0.00 4.04
4451 4525 2.420129 GGCTAGCCCTTCAATTTCGAGA 60.420 50.000 24.19 0.00 0.00 4.04
4452 4526 3.270877 GCTAGCCCTTCAATTTCGAGAA 58.729 45.455 2.29 0.00 0.00 2.87
4453 4527 3.311048 GCTAGCCCTTCAATTTCGAGAAG 59.689 47.826 2.29 5.41 40.64 2.85
4454 4528 3.703001 AGCCCTTCAATTTCGAGAAGA 57.297 42.857 12.36 0.00 42.95 2.87
4455 4529 4.021102 AGCCCTTCAATTTCGAGAAGAA 57.979 40.909 12.36 4.39 42.95 2.52
4456 4530 4.593956 AGCCCTTCAATTTCGAGAAGAAT 58.406 39.130 12.36 0.00 42.95 2.40
4457 4531 5.745227 AGCCCTTCAATTTCGAGAAGAATA 58.255 37.500 12.36 0.00 42.95 1.75
4458 4532 5.819901 AGCCCTTCAATTTCGAGAAGAATAG 59.180 40.000 12.36 2.10 42.95 1.73
4459 4533 5.008118 GCCCTTCAATTTCGAGAAGAATAGG 59.992 44.000 12.36 7.08 42.95 2.57
4460 4534 5.008118 CCCTTCAATTTCGAGAAGAATAGGC 59.992 44.000 12.36 0.00 42.95 3.93
4461 4535 5.277058 CCTTCAATTTCGAGAAGAATAGGCG 60.277 44.000 12.36 0.00 42.95 5.52
4462 4536 3.555956 TCAATTTCGAGAAGAATAGGCGC 59.444 43.478 0.00 0.00 38.86 6.53
4463 4537 2.961526 TTTCGAGAAGAATAGGCGCT 57.038 45.000 7.64 0.00 38.86 5.92
4464 4538 4.585955 ATTTCGAGAAGAATAGGCGCTA 57.414 40.909 7.64 0.00 38.86 4.26
4465 4539 4.585955 TTTCGAGAAGAATAGGCGCTAT 57.414 40.909 7.64 0.00 38.86 2.97
4466 4540 3.560902 TCGAGAAGAATAGGCGCTATG 57.439 47.619 7.64 0.00 0.00 2.23
4467 4541 3.146847 TCGAGAAGAATAGGCGCTATGA 58.853 45.455 7.64 0.00 0.00 2.15
4468 4542 3.058155 TCGAGAAGAATAGGCGCTATGAC 60.058 47.826 7.64 0.00 0.00 3.06
4469 4543 3.304726 CGAGAAGAATAGGCGCTATGACA 60.305 47.826 7.64 0.00 0.00 3.58
4470 4544 4.233789 GAGAAGAATAGGCGCTATGACAG 58.766 47.826 7.64 0.00 0.00 3.51
4471 4545 3.891977 AGAAGAATAGGCGCTATGACAGA 59.108 43.478 7.64 0.00 0.00 3.41
4472 4546 3.932545 AGAATAGGCGCTATGACAGAG 57.067 47.619 7.64 0.00 0.00 3.35
4473 4547 3.226777 AGAATAGGCGCTATGACAGAGT 58.773 45.455 7.64 0.00 0.00 3.24
4474 4548 3.005261 AGAATAGGCGCTATGACAGAGTG 59.995 47.826 7.64 6.27 0.00 3.51
4482 4556 4.606457 GCTATGACAGAGTGCGAAAATT 57.394 40.909 0.00 0.00 0.00 1.82
4483 4557 4.337763 GCTATGACAGAGTGCGAAAATTG 58.662 43.478 0.00 0.00 0.00 2.32
4484 4558 4.142816 GCTATGACAGAGTGCGAAAATTGT 60.143 41.667 0.00 0.00 0.00 2.71
4485 4559 3.878086 TGACAGAGTGCGAAAATTGTC 57.122 42.857 0.00 0.00 36.40 3.18
4486 4560 2.220824 TGACAGAGTGCGAAAATTGTCG 59.779 45.455 13.87 13.87 43.98 4.35
4494 4568 1.865725 CGAAAATTGTCGCGAGTTCC 58.134 50.000 10.24 0.00 33.66 3.62
4495 4569 1.193650 CGAAAATTGTCGCGAGTTCCA 59.806 47.619 10.24 0.00 33.66 3.53
4496 4570 2.721797 CGAAAATTGTCGCGAGTTCCAG 60.722 50.000 10.24 0.00 33.66 3.86
4497 4571 2.163818 AAATTGTCGCGAGTTCCAGA 57.836 45.000 10.24 0.00 0.00 3.86
4498 4572 1.714794 AATTGTCGCGAGTTCCAGAG 58.285 50.000 10.24 0.00 0.00 3.35
4499 4573 0.737715 ATTGTCGCGAGTTCCAGAGC 60.738 55.000 10.24 0.00 0.00 4.09
4500 4574 1.806461 TTGTCGCGAGTTCCAGAGCT 61.806 55.000 10.24 0.00 0.00 4.09
4501 4575 1.803519 GTCGCGAGTTCCAGAGCTG 60.804 63.158 10.24 0.00 0.00 4.24
4502 4576 2.259818 CGCGAGTTCCAGAGCTGT 59.740 61.111 0.00 0.00 0.00 4.40
4503 4577 0.958876 TCGCGAGTTCCAGAGCTGTA 60.959 55.000 3.71 0.00 0.00 2.74
4504 4578 0.798771 CGCGAGTTCCAGAGCTGTAC 60.799 60.000 0.00 0.00 0.00 2.90
4505 4579 0.458716 GCGAGTTCCAGAGCTGTACC 60.459 60.000 0.00 0.00 0.00 3.34
4506 4580 0.888619 CGAGTTCCAGAGCTGTACCA 59.111 55.000 0.00 0.00 0.00 3.25
4507 4581 1.135257 CGAGTTCCAGAGCTGTACCAG 60.135 57.143 0.00 0.00 34.12 4.00
4519 4593 2.898705 CTGTACCAGCTCCAGACAATC 58.101 52.381 0.00 0.00 0.00 2.67
4520 4594 2.499289 CTGTACCAGCTCCAGACAATCT 59.501 50.000 0.00 0.00 0.00 2.40
4521 4595 3.701542 CTGTACCAGCTCCAGACAATCTA 59.298 47.826 0.00 0.00 0.00 1.98
4522 4596 3.447586 TGTACCAGCTCCAGACAATCTAC 59.552 47.826 0.00 0.00 0.00 2.59
4523 4597 2.826488 ACCAGCTCCAGACAATCTACT 58.174 47.619 0.00 0.00 0.00 2.57
4524 4598 3.177228 ACCAGCTCCAGACAATCTACTT 58.823 45.455 0.00 0.00 0.00 2.24
4525 4599 3.584848 ACCAGCTCCAGACAATCTACTTT 59.415 43.478 0.00 0.00 0.00 2.66
4526 4600 3.937706 CCAGCTCCAGACAATCTACTTTG 59.062 47.826 0.00 0.00 0.00 2.77
4527 4601 4.323028 CCAGCTCCAGACAATCTACTTTGA 60.323 45.833 0.00 0.00 0.00 2.69
4528 4602 4.869297 CAGCTCCAGACAATCTACTTTGAG 59.131 45.833 0.00 0.00 0.00 3.02
4529 4603 3.620821 GCTCCAGACAATCTACTTTGAGC 59.379 47.826 0.00 0.00 34.08 4.26
4530 4604 4.825422 CTCCAGACAATCTACTTTGAGCA 58.175 43.478 0.00 0.00 0.00 4.26
4531 4605 4.569943 TCCAGACAATCTACTTTGAGCAC 58.430 43.478 0.00 0.00 0.00 4.40
4532 4606 3.686726 CCAGACAATCTACTTTGAGCACC 59.313 47.826 0.00 0.00 0.00 5.01
4533 4607 4.318332 CAGACAATCTACTTTGAGCACCA 58.682 43.478 0.00 0.00 0.00 4.17
4534 4608 4.153117 CAGACAATCTACTTTGAGCACCAC 59.847 45.833 0.00 0.00 0.00 4.16
4535 4609 4.040952 AGACAATCTACTTTGAGCACCACT 59.959 41.667 0.00 0.00 0.00 4.00
4536 4610 4.319177 ACAATCTACTTTGAGCACCACTC 58.681 43.478 0.00 0.00 46.45 3.51
4543 4617 2.258591 GAGCACCACTCGCGAAGA 59.741 61.111 11.33 0.00 35.18 2.87
4544 4618 1.372997 GAGCACCACTCGCGAAGAA 60.373 57.895 11.33 0.00 35.18 2.52
4545 4619 1.618640 GAGCACCACTCGCGAAGAAC 61.619 60.000 11.33 0.00 35.18 3.01
4546 4620 2.668280 GCACCACTCGCGAAGAACC 61.668 63.158 11.33 0.00 0.00 3.62
4547 4621 1.006102 CACCACTCGCGAAGAACCT 60.006 57.895 11.33 0.00 0.00 3.50
4548 4622 1.009389 CACCACTCGCGAAGAACCTC 61.009 60.000 11.33 0.00 0.00 3.85
4549 4623 1.801913 CCACTCGCGAAGAACCTCG 60.802 63.158 11.33 0.00 41.84 4.63
4550 4624 1.209383 CACTCGCGAAGAACCTCGA 59.791 57.895 11.33 0.00 41.44 4.04
4551 4625 0.386858 CACTCGCGAAGAACCTCGAA 60.387 55.000 11.33 0.00 41.44 3.71
4552 4626 0.109689 ACTCGCGAAGAACCTCGAAG 60.110 55.000 11.33 0.00 41.44 3.79
4553 4627 1.406970 CTCGCGAAGAACCTCGAAGC 61.407 60.000 11.33 0.00 41.44 3.86
4554 4628 1.444553 CGCGAAGAACCTCGAAGCT 60.445 57.895 0.00 0.00 41.44 3.74
4555 4629 1.009389 CGCGAAGAACCTCGAAGCTT 61.009 55.000 0.00 0.00 41.44 3.74
4556 4630 0.440371 GCGAAGAACCTCGAAGCTTG 59.560 55.000 2.10 0.00 41.44 4.01
4557 4631 0.440371 CGAAGAACCTCGAAGCTTGC 59.560 55.000 2.10 0.00 41.44 4.01
4558 4632 0.799393 GAAGAACCTCGAAGCTTGCC 59.201 55.000 2.10 0.00 0.00 4.52
4559 4633 0.108585 AAGAACCTCGAAGCTTGCCA 59.891 50.000 2.10 0.00 0.00 4.92
4560 4634 0.108585 AGAACCTCGAAGCTTGCCAA 59.891 50.000 2.10 0.00 0.00 4.52
4561 4635 0.951558 GAACCTCGAAGCTTGCCAAA 59.048 50.000 2.10 0.00 0.00 3.28
4562 4636 0.954452 AACCTCGAAGCTTGCCAAAG 59.046 50.000 2.10 0.00 36.41 2.77
4563 4637 0.108585 ACCTCGAAGCTTGCCAAAGA 59.891 50.000 2.10 0.00 35.19 2.52
4564 4638 1.271597 ACCTCGAAGCTTGCCAAAGAT 60.272 47.619 2.10 0.00 35.19 2.40
4565 4639 1.131883 CCTCGAAGCTTGCCAAAGATG 59.868 52.381 2.10 0.00 35.19 2.90
4566 4640 2.079158 CTCGAAGCTTGCCAAAGATGA 58.921 47.619 2.10 0.00 35.19 2.92
4567 4641 1.806542 TCGAAGCTTGCCAAAGATGAC 59.193 47.619 2.10 0.00 35.19 3.06
4568 4642 1.808945 CGAAGCTTGCCAAAGATGACT 59.191 47.619 2.10 0.00 35.19 3.41
4569 4643 2.159599 CGAAGCTTGCCAAAGATGACTC 60.160 50.000 2.10 0.00 35.19 3.36
4570 4644 1.831580 AGCTTGCCAAAGATGACTCC 58.168 50.000 0.00 0.00 35.19 3.85
4571 4645 0.449388 GCTTGCCAAAGATGACTCCG 59.551 55.000 0.00 0.00 35.19 4.63
4572 4646 1.813513 CTTGCCAAAGATGACTCCGT 58.186 50.000 0.00 0.00 35.19 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 41 7.887996 AACAAAATATTACCGACGTCACTAA 57.112 32.000 17.16 10.11 0.00 2.24
42 45 7.649370 TTGTAACAAAATATTACCGACGTCA 57.351 32.000 17.16 0.00 32.52 4.35
157 162 1.207791 AGACTAGTGCCATCCTTGGG 58.792 55.000 0.00 0.00 43.84 4.12
158 163 3.068873 GTCTAGACTAGTGCCATCCTTGG 59.931 52.174 15.91 0.00 46.66 3.61
159 164 3.957497 AGTCTAGACTAGTGCCATCCTTG 59.043 47.826 24.04 0.00 40.43 3.61
344 357 2.764010 ACATGTACATTGTCTCCCGCTA 59.236 45.455 5.37 0.00 0.00 4.26
366 379 5.339008 TCACCACACATATCTTGTAGTCC 57.661 43.478 0.00 0.00 36.57 3.85
426 439 4.222124 AGCCTAAGATTTGAACCATCGT 57.778 40.909 0.00 0.00 0.00 3.73
438 451 3.203040 ACCACCAATGCTAAGCCTAAGAT 59.797 43.478 0.00 0.00 0.00 2.40
473 486 6.737254 TCACCGAAAGAACTGGAATAAATC 57.263 37.500 0.00 0.00 0.00 2.17
481 494 1.197721 GCACATCACCGAAAGAACTGG 59.802 52.381 0.00 0.00 0.00 4.00
530 553 5.280654 AGATTGACAAACTTGCCACAAAT 57.719 34.783 0.00 0.00 0.00 2.32
556 579 6.255294 AGGCTACTAGAGACTGAGTTCATA 57.745 41.667 0.00 0.00 44.48 2.15
666 698 7.850501 TGCAACTAAAAATAGCTTTTCTTTGC 58.149 30.769 14.92 14.92 45.05 3.68
690 722 9.977762 CTTCCAACAATCTTTTCTTTTCTTTTG 57.022 29.630 0.00 0.00 0.00 2.44
767 800 4.487412 GGCGTAGGGTCACCGTCG 62.487 72.222 0.00 0.00 43.47 5.12
797 832 2.401766 GCCCACTGGAAGCGTGATG 61.402 63.158 0.00 0.00 37.60 3.07
922 958 2.100603 GGACGAAGAGAGACGCCG 59.899 66.667 0.00 0.00 0.00 6.46
1204 1242 1.733041 CGAGCCGAAACGAGCAGAA 60.733 57.895 0.00 0.00 0.00 3.02
1261 1299 1.119684 TATAGCTTCGCCTTCCTGCA 58.880 50.000 0.00 0.00 0.00 4.41
1347 1385 0.955919 GGACCTTGCCGTTCTCCTTG 60.956 60.000 0.00 0.00 0.00 3.61
1410 1448 4.282703 GGAAACAACTACAGACCTAGGTGA 59.717 45.833 22.10 0.34 35.32 4.02
1420 1458 6.016777 AGCAAAATCTGAGGAAACAACTACAG 60.017 38.462 0.00 0.00 0.00 2.74
1452 1491 0.737715 AGCAACTGAGCGATCGGAAC 60.738 55.000 17.94 4.81 40.15 3.62
1467 1506 5.645067 CCTGTGATGAATCTACTTGAAGCAA 59.355 40.000 0.00 0.00 0.00 3.91
1616 1655 4.922206 TGGCAAACATCTCATCCTTAAGT 58.078 39.130 0.97 0.00 0.00 2.24
1669 1708 0.719465 CGCACGCGGAAATAGAGTTT 59.281 50.000 12.47 0.00 35.56 2.66
1687 1726 1.011242 CAACCACGCAAGACACACG 60.011 57.895 0.00 0.00 43.62 4.49
1759 1798 5.696270 CACTAGTGTCTCACAAAGCATACAA 59.304 40.000 15.06 0.00 36.74 2.41
1786 1825 5.304614 GCTATAGAATGTAACCAGGTCAGGA 59.695 44.000 3.21 0.00 0.00 3.86
1788 1827 6.040955 TCAGCTATAGAATGTAACCAGGTCAG 59.959 42.308 3.21 0.00 0.00 3.51
1876 1915 4.619973 TGTTGTTTTGCTGATGATTCACC 58.380 39.130 0.00 0.00 0.00 4.02
2024 2063 6.019656 TGGAACATTGCCCTTATTATACCA 57.980 37.500 0.00 0.00 0.00 3.25
2038 2077 1.067354 GCCTTGCCTCTTGGAACATTG 60.067 52.381 0.00 0.00 39.30 2.82
2041 2080 1.228552 GGCCTTGCCTCTTGGAACA 60.229 57.895 0.00 0.00 46.69 3.18
2112 2151 7.684062 AAAAATTCACAAACATCAAGAGTCG 57.316 32.000 0.00 0.00 0.00 4.18
2209 2258 4.163078 AGAACTTCCATGTGGATCTACAGG 59.837 45.833 17.42 16.71 44.98 4.00
2338 2388 7.168219 TGAAGCTACAAATATCATCCATACCC 58.832 38.462 0.00 0.00 0.00 3.69
2339 2389 8.621532 TTGAAGCTACAAATATCATCCATACC 57.378 34.615 0.00 0.00 0.00 2.73
2345 2395 9.304731 TGCAATTTTGAAGCTACAAATATCATC 57.695 29.630 0.00 0.00 39.09 2.92
2346 2396 9.090692 GTGCAATTTTGAAGCTACAAATATCAT 57.909 29.630 0.00 0.00 39.09 2.45
2576 2629 2.548057 ACAAAGACTAACATGTGTGGCG 59.452 45.455 0.00 0.00 0.00 5.69
2585 2646 8.220755 AGCATGACTAAAAACAAAGACTAACA 57.779 30.769 0.00 0.00 0.00 2.41
2662 2723 6.292919 GCAAGTCAGTAGGTTAAACAAGACAG 60.293 42.308 0.00 0.00 30.88 3.51
2711 2772 5.009410 GCAGCTGCTACTTGGATGAAATAAT 59.991 40.000 31.33 0.00 38.21 1.28
2754 2815 3.065371 GCGACAGCCATAAGTAGCAAAAT 59.935 43.478 0.00 0.00 36.55 1.82
2805 2871 2.483714 GGTATCAGCGAGATTTGCAGGA 60.484 50.000 0.03 0.00 38.19 3.86
2806 2872 1.869767 GGTATCAGCGAGATTTGCAGG 59.130 52.381 0.03 0.00 38.19 4.85
2818 2884 4.081642 TGACTACTTGAACAGGGTATCAGC 60.082 45.833 0.00 0.00 0.00 4.26
2891 2957 1.753368 GCCAGTGGAGCCTAGCCTAG 61.753 65.000 15.20 0.00 0.00 3.02
2941 3007 7.611213 AGCTAACCACATATCAAACAAGTAC 57.389 36.000 0.00 0.00 0.00 2.73
3377 3445 4.642437 TCAGCGATCTCATCAACTAAGTCT 59.358 41.667 0.00 0.00 0.00 3.24
3383 3451 2.223456 CGACTCAGCGATCTCATCAACT 60.223 50.000 0.00 0.00 0.00 3.16
3389 3457 0.179153 CAAGCGACTCAGCGATCTCA 60.179 55.000 0.00 0.00 43.00 3.27
3500 3568 1.936547 GTTGATTCCTCCTTAGCTGCG 59.063 52.381 0.00 0.00 0.00 5.18
3651 3719 1.321474 ACGACTACCAACTTCCGTCA 58.679 50.000 0.00 0.00 0.00 4.35
3742 3811 2.587753 ACGCGTGAACACCCAGTG 60.588 61.111 12.93 0.00 39.75 3.66
3743 3812 2.279918 GACGCGTGAACACCCAGT 60.280 61.111 20.70 0.00 0.00 4.00
3959 4029 4.660789 AAGGAACTGGCATATCAAATGC 57.339 40.909 1.33 1.33 40.86 3.56
3985 4055 5.277779 CGGCTTCTCACATGTAAGAACAAAA 60.278 40.000 7.39 0.00 39.58 2.44
4015 4088 2.685387 CTAGCTGCCCACCGACGATC 62.685 65.000 0.00 0.00 0.00 3.69
4021 4094 2.898840 CATGCTAGCTGCCCACCG 60.899 66.667 17.23 0.00 42.00 4.94
4034 4107 0.240945 ACTTTGTAACAGGCGCATGC 59.759 50.000 23.75 7.91 41.71 4.06
4114 4187 4.336433 CCAAACATGCTCCGTCAAGATTAT 59.664 41.667 0.00 0.00 0.00 1.28
4132 4205 7.722795 AAAACAATATAAACTGGCACCAAAC 57.277 32.000 0.00 0.00 0.00 2.93
4230 4304 5.689383 AAGCTCTATGTTTCTCGCAAAAA 57.311 34.783 0.00 0.00 0.00 1.94
4231 4305 5.689383 AAAGCTCTATGTTTCTCGCAAAA 57.311 34.783 0.00 0.00 0.00 2.44
4232 4306 6.985188 ATAAAGCTCTATGTTTCTCGCAAA 57.015 33.333 0.00 0.00 0.00 3.68
4233 4307 6.593770 TGAATAAAGCTCTATGTTTCTCGCAA 59.406 34.615 0.00 0.00 0.00 4.85
4234 4308 6.106003 TGAATAAAGCTCTATGTTTCTCGCA 58.894 36.000 0.00 0.00 0.00 5.10
4235 4309 6.589830 TGAATAAAGCTCTATGTTTCTCGC 57.410 37.500 0.00 0.00 0.00 5.03
4236 4310 8.820933 TGATTGAATAAAGCTCTATGTTTCTCG 58.179 33.333 0.00 0.00 0.00 4.04
4241 4315 9.860898 GGTTTTGATTGAATAAAGCTCTATGTT 57.139 29.630 0.00 0.00 0.00 2.71
4242 4316 8.184192 CGGTTTTGATTGAATAAAGCTCTATGT 58.816 33.333 0.00 0.00 0.00 2.29
4243 4317 7.645340 CCGGTTTTGATTGAATAAAGCTCTATG 59.355 37.037 0.00 0.00 0.00 2.23
4244 4318 7.682021 GCCGGTTTTGATTGAATAAAGCTCTAT 60.682 37.037 1.90 0.00 0.00 1.98
4245 4319 6.404293 GCCGGTTTTGATTGAATAAAGCTCTA 60.404 38.462 1.90 0.00 0.00 2.43
4246 4320 5.622233 GCCGGTTTTGATTGAATAAAGCTCT 60.622 40.000 1.90 0.00 0.00 4.09
4247 4321 4.562789 GCCGGTTTTGATTGAATAAAGCTC 59.437 41.667 1.90 0.00 0.00 4.09
4248 4322 4.220602 AGCCGGTTTTGATTGAATAAAGCT 59.779 37.500 1.90 0.00 0.00 3.74
4249 4323 4.494484 AGCCGGTTTTGATTGAATAAAGC 58.506 39.130 1.90 0.00 0.00 3.51
4250 4324 5.102313 GGAGCCGGTTTTGATTGAATAAAG 58.898 41.667 1.90 0.00 0.00 1.85
4251 4325 4.524714 TGGAGCCGGTTTTGATTGAATAAA 59.475 37.500 1.90 0.00 0.00 1.40
4252 4326 4.082845 TGGAGCCGGTTTTGATTGAATAA 58.917 39.130 1.90 0.00 0.00 1.40
4253 4327 3.691575 TGGAGCCGGTTTTGATTGAATA 58.308 40.909 1.90 0.00 0.00 1.75
4254 4328 2.493278 CTGGAGCCGGTTTTGATTGAAT 59.507 45.455 1.90 0.00 0.00 2.57
4255 4329 1.885887 CTGGAGCCGGTTTTGATTGAA 59.114 47.619 1.90 0.00 0.00 2.69
4256 4330 1.533625 CTGGAGCCGGTTTTGATTGA 58.466 50.000 1.90 0.00 0.00 2.57
4257 4331 0.109132 GCTGGAGCCGGTTTTGATTG 60.109 55.000 1.90 0.00 34.31 2.67
4258 4332 1.586154 CGCTGGAGCCGGTTTTGATT 61.586 55.000 1.90 0.00 37.91 2.57
4259 4333 2.040544 CGCTGGAGCCGGTTTTGAT 61.041 57.895 1.90 0.00 37.91 2.57
4260 4334 2.668212 CGCTGGAGCCGGTTTTGA 60.668 61.111 1.90 0.00 37.91 2.69
4261 4335 4.404654 GCGCTGGAGCCGGTTTTG 62.405 66.667 1.90 0.00 37.91 2.44
4262 4336 4.947147 TGCGCTGGAGCCGGTTTT 62.947 61.111 9.73 0.00 37.91 2.43
4263 4337 4.947147 TTGCGCTGGAGCCGGTTT 62.947 61.111 9.73 0.00 37.91 3.27
4264 4338 4.722700 ATTGCGCTGGAGCCGGTT 62.723 61.111 9.73 0.00 37.91 4.44
4267 4341 3.126879 TTGATTGCGCTGGAGCCG 61.127 61.111 9.73 0.00 37.91 5.52
4268 4342 2.486966 GTTGATTGCGCTGGAGCC 59.513 61.111 9.73 0.00 37.91 4.70
4269 4343 1.660560 ATGGTTGATTGCGCTGGAGC 61.661 55.000 9.73 0.00 37.78 4.70
4270 4344 0.379669 GATGGTTGATTGCGCTGGAG 59.620 55.000 9.73 0.00 0.00 3.86
4271 4345 0.322366 TGATGGTTGATTGCGCTGGA 60.322 50.000 9.73 0.00 0.00 3.86
4272 4346 0.099968 CTGATGGTTGATTGCGCTGG 59.900 55.000 9.73 0.00 0.00 4.85
4273 4347 0.099968 CCTGATGGTTGATTGCGCTG 59.900 55.000 9.73 0.00 0.00 5.18
4274 4348 1.660560 GCCTGATGGTTGATTGCGCT 61.661 55.000 9.73 0.00 35.27 5.92
4275 4349 1.226773 GCCTGATGGTTGATTGCGC 60.227 57.895 0.00 0.00 35.27 6.09
4276 4350 0.379669 GAGCCTGATGGTTGATTGCG 59.620 55.000 0.00 0.00 35.27 4.85
4277 4351 0.379669 CGAGCCTGATGGTTGATTGC 59.620 55.000 0.00 0.00 35.27 3.56
4278 4352 1.667724 GACGAGCCTGATGGTTGATTG 59.332 52.381 0.00 0.00 35.27 2.67
4279 4353 1.278985 TGACGAGCCTGATGGTTGATT 59.721 47.619 0.00 0.00 35.27 2.57
4280 4354 0.904649 TGACGAGCCTGATGGTTGAT 59.095 50.000 0.00 0.00 35.27 2.57
4281 4355 0.037326 GTGACGAGCCTGATGGTTGA 60.037 55.000 0.00 0.00 35.27 3.18
4282 4356 0.036952 AGTGACGAGCCTGATGGTTG 60.037 55.000 0.00 0.00 35.27 3.77
4283 4357 1.478510 CTAGTGACGAGCCTGATGGTT 59.521 52.381 0.00 0.00 35.27 3.67
4284 4358 1.107114 CTAGTGACGAGCCTGATGGT 58.893 55.000 0.00 0.00 35.27 3.55
4285 4359 0.387202 CCTAGTGACGAGCCTGATGG 59.613 60.000 0.00 0.00 0.00 3.51
4286 4360 1.393603 TCCTAGTGACGAGCCTGATG 58.606 55.000 0.00 0.00 0.00 3.07
4287 4361 2.028130 CTTCCTAGTGACGAGCCTGAT 58.972 52.381 0.00 0.00 0.00 2.90
4288 4362 1.464734 CTTCCTAGTGACGAGCCTGA 58.535 55.000 0.00 0.00 0.00 3.86
4289 4363 0.179124 GCTTCCTAGTGACGAGCCTG 60.179 60.000 0.00 0.00 0.00 4.85
4290 4364 2.194460 GCTTCCTAGTGACGAGCCT 58.806 57.895 0.00 0.00 0.00 4.58
4291 4365 1.142097 GGCTTCCTAGTGACGAGCC 59.858 63.158 7.68 7.68 45.21 4.70
4292 4366 1.226717 CGGCTTCCTAGTGACGAGC 60.227 63.158 0.00 0.00 0.00 5.03
4293 4367 1.433879 CCGGCTTCCTAGTGACGAG 59.566 63.158 4.73 0.00 0.00 4.18
4294 4368 2.050350 CCCGGCTTCCTAGTGACGA 61.050 63.158 0.00 0.00 0.00 4.20
4295 4369 2.005960 CTCCCGGCTTCCTAGTGACG 62.006 65.000 0.00 0.00 0.00 4.35
4296 4370 1.677637 CCTCCCGGCTTCCTAGTGAC 61.678 65.000 0.00 0.00 0.00 3.67
4297 4371 1.381327 CCTCCCGGCTTCCTAGTGA 60.381 63.158 0.00 0.00 0.00 3.41
4298 4372 1.381327 TCCTCCCGGCTTCCTAGTG 60.381 63.158 0.00 0.00 0.00 2.74
4299 4373 1.075896 CTCCTCCCGGCTTCCTAGT 60.076 63.158 0.00 0.00 0.00 2.57
4300 4374 0.825840 CTCTCCTCCCGGCTTCCTAG 60.826 65.000 0.00 0.00 0.00 3.02
4301 4375 1.230497 CTCTCCTCCCGGCTTCCTA 59.770 63.158 0.00 0.00 0.00 2.94
4302 4376 2.042435 CTCTCCTCCCGGCTTCCT 60.042 66.667 0.00 0.00 0.00 3.36
4303 4377 2.364448 ACTCTCCTCCCGGCTTCC 60.364 66.667 0.00 0.00 0.00 3.46
4304 4378 2.428085 GGACTCTCCTCCCGGCTTC 61.428 68.421 0.00 0.00 32.53 3.86
4305 4379 2.364448 GGACTCTCCTCCCGGCTT 60.364 66.667 0.00 0.00 32.53 4.35
4306 4380 2.937959 GATGGACTCTCCTCCCGGCT 62.938 65.000 0.00 0.00 37.46 5.52
4307 4381 2.444895 ATGGACTCTCCTCCCGGC 60.445 66.667 0.00 0.00 37.46 6.13
4308 4382 1.834822 GGATGGACTCTCCTCCCGG 60.835 68.421 0.00 0.00 37.46 5.73
4309 4383 0.687757 TTGGATGGACTCTCCTCCCG 60.688 60.000 0.00 0.00 37.46 5.14
4310 4384 0.833949 GTTGGATGGACTCTCCTCCC 59.166 60.000 0.00 0.00 37.46 4.30
4311 4385 1.573108 TGTTGGATGGACTCTCCTCC 58.427 55.000 0.00 0.00 37.46 4.30
4312 4386 3.198635 TGATTGTTGGATGGACTCTCCTC 59.801 47.826 0.00 0.00 37.46 3.71
4313 4387 3.184628 TGATTGTTGGATGGACTCTCCT 58.815 45.455 0.00 0.00 37.46 3.69
4314 4388 3.054802 ACTGATTGTTGGATGGACTCTCC 60.055 47.826 0.00 0.00 36.96 3.71
4315 4389 4.187694 GACTGATTGTTGGATGGACTCTC 58.812 47.826 0.00 0.00 0.00 3.20
4316 4390 3.584406 TGACTGATTGTTGGATGGACTCT 59.416 43.478 0.00 0.00 0.00 3.24
4317 4391 3.686726 GTGACTGATTGTTGGATGGACTC 59.313 47.826 0.00 0.00 0.00 3.36
4318 4392 3.328931 AGTGACTGATTGTTGGATGGACT 59.671 43.478 0.00 0.00 0.00 3.85
4319 4393 3.679389 AGTGACTGATTGTTGGATGGAC 58.321 45.455 0.00 0.00 0.00 4.02
4320 4394 3.307691 GGAGTGACTGATTGTTGGATGGA 60.308 47.826 0.00 0.00 0.00 3.41
4321 4395 3.012518 GGAGTGACTGATTGTTGGATGG 58.987 50.000 0.00 0.00 0.00 3.51
4322 4396 3.012518 GGGAGTGACTGATTGTTGGATG 58.987 50.000 0.00 0.00 0.00 3.51
4323 4397 2.644299 TGGGAGTGACTGATTGTTGGAT 59.356 45.455 0.00 0.00 0.00 3.41
4324 4398 2.038952 CTGGGAGTGACTGATTGTTGGA 59.961 50.000 0.00 0.00 0.00 3.53
4325 4399 2.224621 ACTGGGAGTGACTGATTGTTGG 60.225 50.000 0.00 0.00 0.00 3.77
4326 4400 3.131709 ACTGGGAGTGACTGATTGTTG 57.868 47.619 0.00 0.00 0.00 3.33
4338 4412 2.587247 ATGCGAGCACACTGGGAGT 61.587 57.895 0.00 0.00 0.00 3.85
4339 4413 2.104859 CATGCGAGCACACTGGGAG 61.105 63.158 0.00 0.00 0.00 4.30
4340 4414 2.046988 CATGCGAGCACACTGGGA 60.047 61.111 0.00 0.00 0.00 4.37
4341 4415 3.807538 GCATGCGAGCACACTGGG 61.808 66.667 0.00 0.00 0.00 4.45
4342 4416 1.859427 AAAGCATGCGAGCACACTGG 61.859 55.000 13.01 0.00 36.85 4.00
4343 4417 0.728129 CAAAGCATGCGAGCACACTG 60.728 55.000 13.01 0.00 36.85 3.66
4344 4418 1.577922 CAAAGCATGCGAGCACACT 59.422 52.632 13.01 0.00 36.85 3.55
4345 4419 2.084681 GCAAAGCATGCGAGCACAC 61.085 57.895 21.58 3.82 46.87 3.82
4346 4420 2.256158 GCAAAGCATGCGAGCACA 59.744 55.556 21.58 0.00 46.87 4.57
4363 4437 0.317269 CAACTCAGCGCACCTTTGTG 60.317 55.000 11.47 1.73 45.65 3.33
4364 4438 0.748005 ACAACTCAGCGCACCTTTGT 60.748 50.000 11.47 10.89 0.00 2.83
4365 4439 0.381801 AACAACTCAGCGCACCTTTG 59.618 50.000 11.47 10.19 0.00 2.77
4366 4440 1.873591 CTAACAACTCAGCGCACCTTT 59.126 47.619 11.47 0.00 0.00 3.11
4367 4441 1.512926 CTAACAACTCAGCGCACCTT 58.487 50.000 11.47 0.00 0.00 3.50
4368 4442 0.951040 GCTAACAACTCAGCGCACCT 60.951 55.000 11.47 0.00 0.00 4.00
4369 4443 0.951040 AGCTAACAACTCAGCGCACC 60.951 55.000 11.47 0.00 42.74 5.01
4370 4444 0.868406 AAGCTAACAACTCAGCGCAC 59.132 50.000 11.47 0.00 42.74 5.34
4371 4445 0.867746 CAAGCTAACAACTCAGCGCA 59.132 50.000 11.47 0.00 42.74 6.09
4372 4446 0.868406 ACAAGCTAACAACTCAGCGC 59.132 50.000 0.00 0.00 42.74 5.92
4373 4447 2.408050 AGACAAGCTAACAACTCAGCG 58.592 47.619 0.00 0.00 42.74 5.18
4374 4448 3.393800 TGAGACAAGCTAACAACTCAGC 58.606 45.455 0.00 0.00 38.09 4.26
4375 4449 6.646653 TGTATTGAGACAAGCTAACAACTCAG 59.353 38.462 0.00 0.00 36.13 3.35
4376 4450 6.521162 TGTATTGAGACAAGCTAACAACTCA 58.479 36.000 0.00 0.00 33.53 3.41
4377 4451 7.331934 TCATGTATTGAGACAAGCTAACAACTC 59.668 37.037 0.00 0.00 31.83 3.01
4378 4452 7.161404 TCATGTATTGAGACAAGCTAACAACT 58.839 34.615 0.00 0.00 31.83 3.16
4379 4453 7.364522 TCATGTATTGAGACAAGCTAACAAC 57.635 36.000 0.00 0.00 31.83 3.32
4380 4454 7.823799 TCATCATGTATTGAGACAAGCTAACAA 59.176 33.333 0.00 0.00 37.89 2.83
4381 4455 7.330262 TCATCATGTATTGAGACAAGCTAACA 58.670 34.615 0.00 0.00 37.89 2.41
4382 4456 7.776933 TCATCATGTATTGAGACAAGCTAAC 57.223 36.000 0.00 0.00 37.89 2.34
4383 4457 7.823799 TGTTCATCATGTATTGAGACAAGCTAA 59.176 33.333 0.00 0.00 37.89 3.09
4384 4458 7.330262 TGTTCATCATGTATTGAGACAAGCTA 58.670 34.615 0.00 0.00 37.89 3.32
4385 4459 6.175471 TGTTCATCATGTATTGAGACAAGCT 58.825 36.000 0.00 0.00 37.89 3.74
4386 4460 6.426980 TGTTCATCATGTATTGAGACAAGC 57.573 37.500 0.00 0.00 37.89 4.01
4387 4461 8.205131 TGATGTTCATCATGTATTGAGACAAG 57.795 34.615 10.88 0.00 37.89 3.16
4388 4462 8.564509 TTGATGTTCATCATGTATTGAGACAA 57.435 30.769 14.88 0.00 37.89 3.18
4389 4463 8.564509 TTTGATGTTCATCATGTATTGAGACA 57.435 30.769 14.88 3.86 37.89 3.41
4390 4464 9.282247 GTTTTGATGTTCATCATGTATTGAGAC 57.718 33.333 14.88 2.50 37.89 3.36
4391 4465 9.234827 AGTTTTGATGTTCATCATGTATTGAGA 57.765 29.630 14.88 0.00 37.89 3.27
4396 4470 9.685276 TCCTTAGTTTTGATGTTCATCATGTAT 57.315 29.630 14.88 6.40 36.83 2.29
4397 4471 9.513906 TTCCTTAGTTTTGATGTTCATCATGTA 57.486 29.630 14.88 0.00 36.83 2.29
4398 4472 8.408043 TTCCTTAGTTTTGATGTTCATCATGT 57.592 30.769 14.88 4.76 36.83 3.21
4399 4473 9.350357 CTTTCCTTAGTTTTGATGTTCATCATG 57.650 33.333 14.88 0.00 36.83 3.07
4400 4474 9.082313 ACTTTCCTTAGTTTTGATGTTCATCAT 57.918 29.630 14.88 4.54 39.77 2.45
4401 4475 8.463930 ACTTTCCTTAGTTTTGATGTTCATCA 57.536 30.769 10.88 10.88 0.00 3.07
4402 4476 9.185192 CAACTTTCCTTAGTTTTGATGTTCATC 57.815 33.333 5.91 5.91 36.24 2.92
4403 4477 8.912988 TCAACTTTCCTTAGTTTTGATGTTCAT 58.087 29.630 0.00 0.00 36.24 2.57
4404 4478 8.287439 TCAACTTTCCTTAGTTTTGATGTTCA 57.713 30.769 0.00 0.00 36.24 3.18
4405 4479 7.862873 CCTCAACTTTCCTTAGTTTTGATGTTC 59.137 37.037 0.00 0.00 36.24 3.18
4406 4480 7.684428 GCCTCAACTTTCCTTAGTTTTGATGTT 60.684 37.037 0.00 0.00 36.24 2.71
4407 4481 6.239036 GCCTCAACTTTCCTTAGTTTTGATGT 60.239 38.462 0.00 0.00 36.24 3.06
4408 4482 6.015940 AGCCTCAACTTTCCTTAGTTTTGATG 60.016 38.462 0.00 0.00 36.24 3.07
4409 4483 6.071320 AGCCTCAACTTTCCTTAGTTTTGAT 58.929 36.000 0.00 0.00 36.24 2.57
4410 4484 5.445964 AGCCTCAACTTTCCTTAGTTTTGA 58.554 37.500 0.00 0.00 36.24 2.69
4411 4485 5.774498 AGCCTCAACTTTCCTTAGTTTTG 57.226 39.130 0.00 0.00 36.24 2.44
4412 4486 5.473846 GCTAGCCTCAACTTTCCTTAGTTTT 59.526 40.000 2.29 0.00 36.24 2.43
4413 4487 5.004448 GCTAGCCTCAACTTTCCTTAGTTT 58.996 41.667 2.29 0.00 36.24 2.66
4414 4488 4.565861 GGCTAGCCTCAACTTTCCTTAGTT 60.566 45.833 27.17 0.00 38.87 2.24
4415 4489 3.055021 GGCTAGCCTCAACTTTCCTTAGT 60.055 47.826 27.17 0.00 0.00 2.24
4416 4490 3.536570 GGCTAGCCTCAACTTTCCTTAG 58.463 50.000 27.17 0.00 0.00 2.18
4417 4491 2.238898 GGGCTAGCCTCAACTTTCCTTA 59.761 50.000 32.18 0.00 36.10 2.69
4418 4492 1.004862 GGGCTAGCCTCAACTTTCCTT 59.995 52.381 32.18 0.00 36.10 3.36
4419 4493 0.621082 GGGCTAGCCTCAACTTTCCT 59.379 55.000 32.18 0.00 36.10 3.36
4420 4494 0.621082 AGGGCTAGCCTCAACTTTCC 59.379 55.000 32.18 12.91 36.10 3.13
4421 4495 2.290323 TGAAGGGCTAGCCTCAACTTTC 60.290 50.000 32.18 22.70 36.10 2.62
4422 4496 1.705186 TGAAGGGCTAGCCTCAACTTT 59.295 47.619 32.18 16.54 36.10 2.66
4423 4497 1.362224 TGAAGGGCTAGCCTCAACTT 58.638 50.000 32.18 25.18 36.10 2.66
4424 4498 1.362224 TTGAAGGGCTAGCCTCAACT 58.638 50.000 32.18 18.38 36.10 3.16
4425 4499 2.426842 ATTGAAGGGCTAGCCTCAAC 57.573 50.000 30.43 20.95 34.52 3.18
4426 4500 3.356290 GAAATTGAAGGGCTAGCCTCAA 58.644 45.455 30.12 30.12 35.62 3.02
4427 4501 2.680805 CGAAATTGAAGGGCTAGCCTCA 60.681 50.000 32.18 25.24 36.10 3.86
4428 4502 1.943340 CGAAATTGAAGGGCTAGCCTC 59.057 52.381 32.18 22.95 36.10 4.70
4429 4503 1.559682 TCGAAATTGAAGGGCTAGCCT 59.440 47.619 32.18 14.96 36.10 4.58
4430 4504 1.943340 CTCGAAATTGAAGGGCTAGCC 59.057 52.381 26.55 26.55 0.00 3.93
4431 4505 2.906354 TCTCGAAATTGAAGGGCTAGC 58.094 47.619 6.04 6.04 0.00 3.42
4432 4506 4.759782 TCTTCTCGAAATTGAAGGGCTAG 58.240 43.478 11.05 0.00 39.85 3.42
4433 4507 4.819105 TCTTCTCGAAATTGAAGGGCTA 57.181 40.909 11.05 0.00 39.85 3.93
4434 4508 3.703001 TCTTCTCGAAATTGAAGGGCT 57.297 42.857 11.05 0.00 39.85 5.19
4435 4509 4.972514 ATTCTTCTCGAAATTGAAGGGC 57.027 40.909 11.05 0.00 39.85 5.19
4436 4510 5.008118 GCCTATTCTTCTCGAAATTGAAGGG 59.992 44.000 11.05 6.57 39.85 3.95
4437 4511 5.277058 CGCCTATTCTTCTCGAAATTGAAGG 60.277 44.000 11.05 2.55 39.85 3.46
4438 4512 5.732288 CGCCTATTCTTCTCGAAATTGAAG 58.268 41.667 5.93 5.93 40.53 3.02
4439 4513 4.034048 GCGCCTATTCTTCTCGAAATTGAA 59.966 41.667 0.00 0.00 34.79 2.69
4440 4514 3.555956 GCGCCTATTCTTCTCGAAATTGA 59.444 43.478 0.00 0.00 34.79 2.57
4441 4515 3.557595 AGCGCCTATTCTTCTCGAAATTG 59.442 43.478 2.29 0.00 34.79 2.32
4442 4516 3.798202 AGCGCCTATTCTTCTCGAAATT 58.202 40.909 2.29 0.00 34.79 1.82
4443 4517 3.460857 AGCGCCTATTCTTCTCGAAAT 57.539 42.857 2.29 0.00 34.79 2.17
4444 4518 2.961526 AGCGCCTATTCTTCTCGAAA 57.038 45.000 2.29 0.00 34.79 3.46
4445 4519 3.568430 TCATAGCGCCTATTCTTCTCGAA 59.432 43.478 2.29 0.00 35.78 3.71
4446 4520 3.058155 GTCATAGCGCCTATTCTTCTCGA 60.058 47.826 2.29 0.00 0.00 4.04
4447 4521 3.238441 GTCATAGCGCCTATTCTTCTCG 58.762 50.000 2.29 0.00 0.00 4.04
4448 4522 4.022762 TCTGTCATAGCGCCTATTCTTCTC 60.023 45.833 2.29 0.00 0.00 2.87
4449 4523 3.891977 TCTGTCATAGCGCCTATTCTTCT 59.108 43.478 2.29 0.00 0.00 2.85
4450 4524 4.233789 CTCTGTCATAGCGCCTATTCTTC 58.766 47.826 2.29 0.00 0.00 2.87
4451 4525 3.639094 ACTCTGTCATAGCGCCTATTCTT 59.361 43.478 2.29 0.00 0.00 2.52
4452 4526 3.005261 CACTCTGTCATAGCGCCTATTCT 59.995 47.826 2.29 0.00 0.00 2.40
4453 4527 3.312828 CACTCTGTCATAGCGCCTATTC 58.687 50.000 2.29 0.00 0.00 1.75
4454 4528 2.546795 GCACTCTGTCATAGCGCCTATT 60.547 50.000 2.29 0.00 0.00 1.73
4455 4529 1.000283 GCACTCTGTCATAGCGCCTAT 60.000 52.381 2.29 0.00 0.00 2.57
4456 4530 0.385751 GCACTCTGTCATAGCGCCTA 59.614 55.000 2.29 0.00 0.00 3.93
4457 4531 1.142748 GCACTCTGTCATAGCGCCT 59.857 57.895 2.29 0.00 0.00 5.52
4458 4532 2.233654 CGCACTCTGTCATAGCGCC 61.234 63.158 2.29 0.00 41.95 6.53
4459 4533 3.303605 CGCACTCTGTCATAGCGC 58.696 61.111 0.00 0.00 41.95 5.92
4461 4535 4.142816 ACAATTTTCGCACTCTGTCATAGC 60.143 41.667 0.00 0.00 0.00 2.97
4462 4536 5.536554 ACAATTTTCGCACTCTGTCATAG 57.463 39.130 0.00 0.00 0.00 2.23
4463 4537 4.091365 CGACAATTTTCGCACTCTGTCATA 59.909 41.667 0.37 0.00 34.25 2.15
4464 4538 3.120546 CGACAATTTTCGCACTCTGTCAT 60.121 43.478 0.37 0.00 34.25 3.06
4465 4539 2.220824 CGACAATTTTCGCACTCTGTCA 59.779 45.455 0.37 0.00 34.25 3.58
4466 4540 2.827555 CGACAATTTTCGCACTCTGTC 58.172 47.619 0.37 0.00 31.03 3.51
4467 4541 2.949714 CGACAATTTTCGCACTCTGT 57.050 45.000 0.37 0.00 31.03 3.41
4475 4549 1.193650 TGGAACTCGCGACAATTTTCG 59.806 47.619 3.71 9.62 42.15 3.46
4476 4550 2.478894 TCTGGAACTCGCGACAATTTTC 59.521 45.455 3.71 2.96 0.00 2.29
4477 4551 2.480419 CTCTGGAACTCGCGACAATTTT 59.520 45.455 3.71 0.00 0.00 1.82
4478 4552 2.069273 CTCTGGAACTCGCGACAATTT 58.931 47.619 3.71 0.00 0.00 1.82
4479 4553 1.714794 CTCTGGAACTCGCGACAATT 58.285 50.000 3.71 0.00 0.00 2.32
4480 4554 0.737715 GCTCTGGAACTCGCGACAAT 60.738 55.000 3.71 0.00 0.00 2.71
4481 4555 1.372997 GCTCTGGAACTCGCGACAA 60.373 57.895 3.71 0.00 0.00 3.18
4482 4556 2.258591 GCTCTGGAACTCGCGACA 59.741 61.111 3.71 0.00 0.00 4.35
4483 4557 1.803519 CAGCTCTGGAACTCGCGAC 60.804 63.158 3.71 0.00 0.00 5.19
4484 4558 0.958876 TACAGCTCTGGAACTCGCGA 60.959 55.000 9.26 9.26 34.19 5.87
4485 4559 0.798771 GTACAGCTCTGGAACTCGCG 60.799 60.000 0.00 0.00 34.19 5.87
4486 4560 0.458716 GGTACAGCTCTGGAACTCGC 60.459 60.000 1.66 0.00 34.19 5.03
4487 4561 0.888619 TGGTACAGCTCTGGAACTCG 59.111 55.000 0.00 0.00 30.70 4.18
4500 4574 2.540383 AGATTGTCTGGAGCTGGTACA 58.460 47.619 0.00 0.00 0.00 2.90
4501 4575 3.702045 AGTAGATTGTCTGGAGCTGGTAC 59.298 47.826 0.00 0.00 0.00 3.34
4502 4576 3.982516 AGTAGATTGTCTGGAGCTGGTA 58.017 45.455 0.00 0.00 0.00 3.25
4503 4577 2.826488 AGTAGATTGTCTGGAGCTGGT 58.174 47.619 0.00 0.00 0.00 4.00
4504 4578 3.902881 AAGTAGATTGTCTGGAGCTGG 57.097 47.619 0.00 0.00 0.00 4.85
4505 4579 4.825422 TCAAAGTAGATTGTCTGGAGCTG 58.175 43.478 0.00 0.00 0.00 4.24
4506 4580 4.622695 GCTCAAAGTAGATTGTCTGGAGCT 60.623 45.833 0.00 0.00 38.12 4.09
4507 4581 3.620821 GCTCAAAGTAGATTGTCTGGAGC 59.379 47.826 0.00 0.00 36.00 4.70
4508 4582 4.629200 GTGCTCAAAGTAGATTGTCTGGAG 59.371 45.833 0.00 0.00 0.00 3.86
4509 4583 4.563580 GGTGCTCAAAGTAGATTGTCTGGA 60.564 45.833 0.00 0.00 0.00 3.86
4510 4584 3.686726 GGTGCTCAAAGTAGATTGTCTGG 59.313 47.826 0.00 0.00 0.00 3.86
4511 4585 4.153117 GTGGTGCTCAAAGTAGATTGTCTG 59.847 45.833 0.00 0.00 0.00 3.51
4512 4586 4.040952 AGTGGTGCTCAAAGTAGATTGTCT 59.959 41.667 0.00 0.00 0.00 3.41
4513 4587 4.319177 AGTGGTGCTCAAAGTAGATTGTC 58.681 43.478 0.00 0.00 0.00 3.18
4514 4588 4.319177 GAGTGGTGCTCAAAGTAGATTGT 58.681 43.478 0.00 0.00 43.58 2.71
4515 4589 3.369147 CGAGTGGTGCTCAAAGTAGATTG 59.631 47.826 0.00 0.00 44.33 2.67
4516 4590 3.589988 CGAGTGGTGCTCAAAGTAGATT 58.410 45.455 0.00 0.00 44.33 2.40
4517 4591 2.675317 GCGAGTGGTGCTCAAAGTAGAT 60.675 50.000 0.00 0.00 44.33 1.98
4518 4592 1.336887 GCGAGTGGTGCTCAAAGTAGA 60.337 52.381 0.00 0.00 44.33 2.59
4519 4593 1.071605 GCGAGTGGTGCTCAAAGTAG 58.928 55.000 0.00 0.00 44.33 2.57
4520 4594 0.666274 CGCGAGTGGTGCTCAAAGTA 60.666 55.000 0.00 0.00 44.33 2.24
4521 4595 1.956170 CGCGAGTGGTGCTCAAAGT 60.956 57.895 0.00 0.00 44.33 2.66
4522 4596 1.221466 TTCGCGAGTGGTGCTCAAAG 61.221 55.000 9.59 0.00 44.33 2.77
4523 4597 1.221466 CTTCGCGAGTGGTGCTCAAA 61.221 55.000 9.59 0.00 44.33 2.69
4524 4598 1.664649 CTTCGCGAGTGGTGCTCAA 60.665 57.895 9.59 0.00 44.33 3.02
4525 4599 2.049156 CTTCGCGAGTGGTGCTCA 60.049 61.111 9.59 0.00 44.33 4.26
4526 4600 1.372997 TTCTTCGCGAGTGGTGCTC 60.373 57.895 9.59 0.00 40.77 4.26
4527 4601 1.664965 GTTCTTCGCGAGTGGTGCT 60.665 57.895 9.59 0.00 0.00 4.40
4528 4602 2.668280 GGTTCTTCGCGAGTGGTGC 61.668 63.158 9.59 0.00 0.00 5.01
4529 4603 1.006102 AGGTTCTTCGCGAGTGGTG 60.006 57.895 9.59 0.00 0.00 4.17
4530 4604 1.289380 GAGGTTCTTCGCGAGTGGT 59.711 57.895 9.59 0.00 0.00 4.16
4531 4605 1.801913 CGAGGTTCTTCGCGAGTGG 60.802 63.158 9.59 4.10 33.39 4.00
4532 4606 0.386858 TTCGAGGTTCTTCGCGAGTG 60.387 55.000 9.59 6.90 40.29 3.51
4533 4607 0.109689 CTTCGAGGTTCTTCGCGAGT 60.110 55.000 9.59 0.00 40.29 4.18
4534 4608 1.406970 GCTTCGAGGTTCTTCGCGAG 61.407 60.000 9.59 3.89 40.29 5.03
4535 4609 1.443872 GCTTCGAGGTTCTTCGCGA 60.444 57.895 3.71 3.71 40.29 5.87
4536 4610 1.009389 AAGCTTCGAGGTTCTTCGCG 61.009 55.000 0.00 0.00 40.29 5.87
4537 4611 0.440371 CAAGCTTCGAGGTTCTTCGC 59.560 55.000 0.00 0.00 40.29 4.70
4538 4612 0.440371 GCAAGCTTCGAGGTTCTTCG 59.560 55.000 0.00 0.00 41.79 3.79
4539 4613 0.799393 GGCAAGCTTCGAGGTTCTTC 59.201 55.000 0.00 0.00 32.99 2.87
4540 4614 0.108585 TGGCAAGCTTCGAGGTTCTT 59.891 50.000 0.00 0.00 32.99 2.52
4541 4615 0.108585 TTGGCAAGCTTCGAGGTTCT 59.891 50.000 0.00 0.00 32.99 3.01
4542 4616 0.951558 TTTGGCAAGCTTCGAGGTTC 59.048 50.000 0.00 0.00 32.99 3.62
4543 4617 0.954452 CTTTGGCAAGCTTCGAGGTT 59.046 50.000 0.00 0.00 36.17 3.50
4544 4618 0.108585 TCTTTGGCAAGCTTCGAGGT 59.891 50.000 0.00 0.00 0.00 3.85
4545 4619 1.131883 CATCTTTGGCAAGCTTCGAGG 59.868 52.381 0.00 0.00 0.00 4.63
4546 4620 2.079158 TCATCTTTGGCAAGCTTCGAG 58.921 47.619 0.00 0.00 0.00 4.04
4547 4621 1.806542 GTCATCTTTGGCAAGCTTCGA 59.193 47.619 0.00 0.00 0.00 3.71
4548 4622 1.808945 AGTCATCTTTGGCAAGCTTCG 59.191 47.619 0.00 0.00 0.00 3.79
4549 4623 2.163211 GGAGTCATCTTTGGCAAGCTTC 59.837 50.000 0.00 0.00 0.00 3.86
4550 4624 2.165998 GGAGTCATCTTTGGCAAGCTT 58.834 47.619 0.00 0.00 0.00 3.74
4551 4625 1.831580 GGAGTCATCTTTGGCAAGCT 58.168 50.000 0.00 0.00 0.00 3.74
4552 4626 0.449388 CGGAGTCATCTTTGGCAAGC 59.551 55.000 0.00 0.00 0.00 4.01
4553 4627 1.813513 ACGGAGTCATCTTTGGCAAG 58.186 50.000 0.00 0.00 29.74 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.