Multiple sequence alignment - TraesCS1D01G225200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G225200 chr1D 100.000 2915 0 0 1 2915 313848794 313851708 0.000000e+00 5384.0
1 TraesCS1D01G225200 chr1A 89.330 2446 102 67 2 2355 394249230 394251608 0.000000e+00 2924.0
2 TraesCS1D01G225200 chr1A 85.773 485 44 19 2433 2915 394251878 394252339 9.390000e-135 490.0
3 TraesCS1D01G225200 chr1B 91.157 1651 57 31 555 2164 423943772 423945374 0.000000e+00 2158.0
4 TraesCS1D01G225200 chr1B 88.380 568 45 13 2159 2717 423945561 423946116 0.000000e+00 664.0
5 TraesCS1D01G225200 chr1B 91.429 140 11 1 262 400 423943493 423943632 1.070000e-44 191.0
6 TraesCS1D01G225200 chr1B 91.473 129 5 5 63 187 423943356 423943482 3.860000e-39 172.0
7 TraesCS1D01G225200 chr1B 95.455 88 2 2 405 492 423943679 423943764 3.920000e-29 139.0
8 TraesCS1D01G225200 chr5B 89.447 199 19 2 2717 2915 491579945 491580141 1.730000e-62 250.0
9 TraesCS1D01G225200 chr5B 87.113 194 23 2 2717 2909 554778406 554778214 4.890000e-53 219.0
10 TraesCS1D01G225200 chr3D 88.083 193 20 3 2717 2909 54974868 54975057 2.920000e-55 226.0
11 TraesCS1D01G225200 chr3D 87.565 193 22 2 2717 2909 51045421 51045231 3.780000e-54 222.0
12 TraesCS1D01G225200 chr5D 87.065 201 23 3 2715 2915 462029486 462029289 1.050000e-54 224.0
13 TraesCS1D01G225200 chr5D 87.565 193 22 2 2717 2909 327629361 327629171 3.780000e-54 222.0
14 TraesCS1D01G225200 chr5D 95.370 108 5 0 1172 1279 420026219 420026326 3.860000e-39 172.0
15 TraesCS1D01G225200 chr5D 94.495 109 6 0 1174 1282 444893885 444893993 5.000000e-38 169.0
16 TraesCS1D01G225200 chr5D 100.000 35 0 0 1060 1094 444893491 444893525 6.740000e-07 65.8
17 TraesCS1D01G225200 chr7D 87.565 193 22 2 2717 2909 86078793 86078603 3.780000e-54 222.0
18 TraesCS1D01G225200 chr2B 86.432 199 25 2 2717 2915 88908261 88908065 1.760000e-52 217.0
19 TraesCS1D01G225200 chr4D 86.432 199 24 3 2717 2915 85685922 85686117 6.330000e-52 215.0
20 TraesCS1D01G225200 chr4D 78.351 291 55 8 1057 1343 467225576 467225290 6.420000e-42 182.0
21 TraesCS1D01G225200 chr4D 73.754 301 62 16 1075 1366 426643198 426643490 5.140000e-18 102.0
22 TraesCS1D01G225200 chr4B 79.038 291 53 8 1057 1343 585024411 585024125 2.960000e-45 193.0
23 TraesCS1D01G225200 chr4A 78.571 294 49 13 1057 1343 3799022 3799308 6.420000e-42 182.0
24 TraesCS1D01G225200 chr4A 74.679 312 66 11 1062 1366 38805643 38805338 3.050000e-25 126.0
25 TraesCS1D01G225200 chr2A 96.774 31 1 0 1068 1098 421243534 421243564 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G225200 chr1D 313848794 313851708 2914 False 5384.0 5384 100.0000 1 2915 1 chr1D.!!$F1 2914
1 TraesCS1D01G225200 chr1A 394249230 394252339 3109 False 1707.0 2924 87.5515 2 2915 2 chr1A.!!$F1 2913
2 TraesCS1D01G225200 chr1B 423943356 423946116 2760 False 664.8 2158 91.5788 63 2717 5 chr1B.!!$F1 2654

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
524 599 0.669318 TAACAGGAAACGGCAGAGCG 60.669 55.0 0.0 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1979 2133 0.39086 GAGATGGAGACGGACATGGG 59.609 60.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 120 2.200373 ACCACTACCAGCCATGAAAC 57.800 50.000 0.00 0.00 0.00 2.78
118 121 1.705186 ACCACTACCAGCCATGAAACT 59.295 47.619 0.00 0.00 0.00 2.66
119 122 2.086869 CCACTACCAGCCATGAAACTG 58.913 52.381 0.00 0.00 0.00 3.16
120 123 1.470098 CACTACCAGCCATGAAACTGC 59.530 52.381 0.00 0.00 32.37 4.40
121 124 1.073763 ACTACCAGCCATGAAACTGCA 59.926 47.619 0.00 0.00 32.37 4.41
122 125 1.741706 CTACCAGCCATGAAACTGCAG 59.258 52.381 13.48 13.48 32.37 4.41
190 195 8.570068 ACGCCAAACCTTTAATCTTTAAGATA 57.430 30.769 7.98 0.00 32.89 1.98
281 308 6.737254 AAGTTGTAGTCATAAATTGGTCGG 57.263 37.500 0.00 0.00 0.00 4.79
322 349 3.490526 CAGCACACAAACATAAAACCAGC 59.509 43.478 0.00 0.00 0.00 4.85
329 356 5.630680 CACAAACATAAAACCAGCATCAGAC 59.369 40.000 0.00 0.00 0.00 3.51
400 431 4.586884 TGGTACTACAACTCATCGACTCT 58.413 43.478 0.00 0.00 0.00 3.24
402 433 6.175471 TGGTACTACAACTCATCGACTCTTA 58.825 40.000 0.00 0.00 0.00 2.10
403 434 6.827251 TGGTACTACAACTCATCGACTCTTAT 59.173 38.462 0.00 0.00 0.00 1.73
419 492 9.847706 TCGACTCTTATCAGCAAATAAGATATC 57.152 33.333 16.59 15.52 43.69 1.63
471 546 2.784654 CGATCCTCCCTCCCTCCCT 61.785 68.421 0.00 0.00 0.00 4.20
472 547 1.157513 GATCCTCCCTCCCTCCCTC 59.842 68.421 0.00 0.00 0.00 4.30
473 548 2.395180 GATCCTCCCTCCCTCCCTCC 62.395 70.000 0.00 0.00 0.00 4.30
474 549 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
516 591 2.280628 GGCTGGAGATAACAGGAAACG 58.719 52.381 0.00 0.00 36.48 3.60
517 592 2.280628 GCTGGAGATAACAGGAAACGG 58.719 52.381 0.00 0.00 36.48 4.44
518 593 2.280628 CTGGAGATAACAGGAAACGGC 58.719 52.381 0.00 0.00 32.38 5.68
519 594 1.626321 TGGAGATAACAGGAAACGGCA 59.374 47.619 0.00 0.00 0.00 5.69
520 595 2.280628 GGAGATAACAGGAAACGGCAG 58.719 52.381 0.00 0.00 0.00 4.85
521 596 2.093658 GGAGATAACAGGAAACGGCAGA 60.094 50.000 0.00 0.00 0.00 4.26
522 597 3.190874 GAGATAACAGGAAACGGCAGAG 58.809 50.000 0.00 0.00 0.00 3.35
523 598 1.666189 GATAACAGGAAACGGCAGAGC 59.334 52.381 0.00 0.00 0.00 4.09
524 599 0.669318 TAACAGGAAACGGCAGAGCG 60.669 55.000 0.00 0.00 0.00 5.03
525 600 3.793144 CAGGAAACGGCAGAGCGC 61.793 66.667 0.00 0.00 41.28 5.92
526 601 4.314440 AGGAAACGGCAGAGCGCA 62.314 61.111 11.47 0.00 45.17 6.09
527 602 3.793144 GGAAACGGCAGAGCGCAG 61.793 66.667 11.47 0.00 45.17 5.18
577 654 1.538512 CACCACTCGAGAGAAACGGTA 59.461 52.381 21.68 0.00 41.32 4.02
578 655 1.811359 ACCACTCGAGAGAAACGGTAG 59.189 52.381 21.68 0.00 41.32 3.18
579 656 1.467713 CCACTCGAGAGAAACGGTAGC 60.468 57.143 21.68 0.00 41.32 3.58
580 657 1.199327 CACTCGAGAGAAACGGTAGCA 59.801 52.381 21.68 0.00 41.32 3.49
581 658 1.199558 ACTCGAGAGAAACGGTAGCAC 59.800 52.381 21.68 0.00 41.32 4.40
582 659 1.469308 CTCGAGAGAAACGGTAGCACT 59.531 52.381 6.58 0.00 41.32 4.40
864 983 2.330041 CACGAACCAACCAACGCC 59.670 61.111 0.00 0.00 0.00 5.68
867 986 2.613506 CGAACCAACCAACGCCCTC 61.614 63.158 0.00 0.00 0.00 4.30
944 1063 2.237643 ACGTCCTTATATGCACAACCCA 59.762 45.455 0.00 0.00 0.00 4.51
1347 1468 1.669115 CCACTGGAACTCCACGCTG 60.669 63.158 0.00 0.00 42.01 5.18
1941 2095 0.179084 GCCAAGCATCTGCATTGCAT 60.179 50.000 20.13 8.70 45.16 3.96
1979 2133 2.839026 CGTTGTTACTCGTCGATCTCAC 59.161 50.000 0.00 0.00 0.00 3.51
2006 2160 1.486310 CCGTCTCCATCTCCATTTCCA 59.514 52.381 0.00 0.00 0.00 3.53
2105 2259 2.927553 AACAGAAGCATTTCGGATGC 57.072 45.000 14.34 14.34 44.85 3.91
2146 2301 2.675242 TTGGGCCGGTTGGATCGAT 61.675 57.895 1.90 0.00 37.49 3.59
2243 2590 2.519780 GTTTGGTTGGGTGGGCGA 60.520 61.111 0.00 0.00 0.00 5.54
2264 2611 3.729698 GTTACCCAACCGCACGCC 61.730 66.667 0.00 0.00 0.00 5.68
2359 2706 2.358737 GGGCTCACACTTGACGGG 60.359 66.667 0.00 0.00 0.00 5.28
2373 2720 3.161817 CGGGCGTTTCCGTTACTG 58.838 61.111 5.96 0.00 44.60 2.74
2380 2727 2.595977 GCGTTTCCGTTACTGCTACTAC 59.404 50.000 0.00 0.00 36.15 2.73
2393 2740 4.082408 ACTGCTACTACATGCGAGTTTACA 60.082 41.667 6.21 2.96 0.00 2.41
2399 2746 8.548721 GCTACTACATGCGAGTTTACATTTATT 58.451 33.333 6.21 0.00 0.00 1.40
2404 2751 7.186804 ACATGCGAGTTTACATTTATTAGCAC 58.813 34.615 0.00 0.00 33.61 4.40
2424 2771 5.656859 AGCACAAGATATGGCGGAGTATATA 59.343 40.000 0.00 0.00 32.48 0.86
2524 3064 9.874215 CATAAGAAAACTCACTATATGCATGTG 57.126 33.333 10.16 9.41 0.00 3.21
2738 3287 2.740055 GACACGTCCAGGCAGCAG 60.740 66.667 0.00 0.00 0.00 4.24
2758 3307 2.461110 ATCGTCGGCGTTGCATTCC 61.461 57.895 10.18 0.00 39.49 3.01
2780 3329 0.036732 CTTGGAGGTGCTGCTTGGTA 59.963 55.000 0.00 0.00 0.00 3.25
2781 3330 0.250727 TTGGAGGTGCTGCTTGGTAC 60.251 55.000 0.00 0.00 0.00 3.34
2782 3331 1.741770 GGAGGTGCTGCTTGGTACG 60.742 63.158 0.00 0.00 0.00 3.67
2783 3332 2.358737 AGGTGCTGCTTGGTACGC 60.359 61.111 0.00 0.00 0.00 4.42
2784 3333 3.788766 GGTGCTGCTTGGTACGCG 61.789 66.667 3.53 3.53 0.00 6.01
2785 3334 2.736995 GTGCTGCTTGGTACGCGA 60.737 61.111 15.93 0.00 0.00 5.87
2786 3335 2.736995 TGCTGCTTGGTACGCGAC 60.737 61.111 15.93 6.63 0.00 5.19
2787 3336 3.838795 GCTGCTTGGTACGCGACG 61.839 66.667 15.93 0.00 0.00 5.12
2788 3337 3.179265 CTGCTTGGTACGCGACGG 61.179 66.667 15.93 2.27 0.00 4.79
2789 3338 3.620300 CTGCTTGGTACGCGACGGA 62.620 63.158 15.93 0.00 0.00 4.69
2790 3339 2.202703 GCTTGGTACGCGACGGAT 60.203 61.111 15.93 0.00 0.00 4.18
2791 3340 2.228914 GCTTGGTACGCGACGGATC 61.229 63.158 15.93 0.00 0.00 3.36
2801 3350 2.771639 CGACGGATCGGAGCCTTGA 61.772 63.158 10.99 0.00 44.99 3.02
2802 3351 1.742768 GACGGATCGGAGCCTTGAT 59.257 57.895 10.99 0.00 0.00 2.57
2803 3352 0.319125 GACGGATCGGAGCCTTGATC 60.319 60.000 10.99 0.00 40.19 2.92
2806 3355 0.755686 GGATCGGAGCCTTGATCTGT 59.244 55.000 4.74 0.00 40.63 3.41
2807 3356 1.539929 GGATCGGAGCCTTGATCTGTG 60.540 57.143 4.74 0.00 40.63 3.66
2808 3357 0.179062 ATCGGAGCCTTGATCTGTGC 60.179 55.000 0.00 0.00 0.00 4.57
2809 3358 1.220206 CGGAGCCTTGATCTGTGCT 59.780 57.895 3.59 3.59 36.62 4.40
2811 3360 0.747283 GGAGCCTTGATCTGTGCTGG 60.747 60.000 7.93 0.00 33.41 4.85
2812 3361 0.747283 GAGCCTTGATCTGTGCTGGG 60.747 60.000 7.93 0.00 33.41 4.45
2813 3362 1.001641 GCCTTGATCTGTGCTGGGT 60.002 57.895 0.00 0.00 0.00 4.51
2814 3363 1.028868 GCCTTGATCTGTGCTGGGTC 61.029 60.000 0.00 0.00 0.00 4.46
2815 3364 0.742281 CCTTGATCTGTGCTGGGTCG 60.742 60.000 0.00 0.00 0.00 4.79
2816 3365 0.247460 CTTGATCTGTGCTGGGTCGA 59.753 55.000 0.00 0.00 0.00 4.20
2817 3366 0.904649 TTGATCTGTGCTGGGTCGAT 59.095 50.000 0.00 0.00 0.00 3.59
2818 3367 0.904649 TGATCTGTGCTGGGTCGATT 59.095 50.000 0.00 0.00 0.00 3.34
2819 3368 1.134699 TGATCTGTGCTGGGTCGATTC 60.135 52.381 0.00 0.00 0.00 2.52
2820 3369 1.137872 GATCTGTGCTGGGTCGATTCT 59.862 52.381 0.00 0.00 0.00 2.40
2821 3370 0.247460 TCTGTGCTGGGTCGATTCTG 59.753 55.000 0.00 0.00 0.00 3.02
2822 3371 0.742281 CTGTGCTGGGTCGATTCTGG 60.742 60.000 0.00 0.00 0.00 3.86
2823 3372 1.191489 TGTGCTGGGTCGATTCTGGA 61.191 55.000 0.00 0.00 0.00 3.86
2824 3373 0.460987 GTGCTGGGTCGATTCTGGAG 60.461 60.000 0.00 0.00 0.00 3.86
2825 3374 1.144936 GCTGGGTCGATTCTGGAGG 59.855 63.158 0.00 0.00 0.00 4.30
2826 3375 1.826024 CTGGGTCGATTCTGGAGGG 59.174 63.158 0.00 0.00 0.00 4.30
2859 3408 0.865111 CGTCATCCGTGCTTTTGTCA 59.135 50.000 0.00 0.00 0.00 3.58
2865 3414 0.381801 CCGTGCTTTTGTCAAGCTGT 59.618 50.000 8.00 0.00 43.38 4.40
2890 3439 6.479660 TCATTGTTGGCATTTGTTTCTTCTTC 59.520 34.615 0.00 0.00 0.00 2.87
2895 3444 7.390162 TGTTGGCATTTGTTTCTTCTTCTTTTT 59.610 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.889994 AAAAAGATGGCTGCATGCGA 59.110 45.000 14.09 1.21 44.05 5.10
49 52 2.159000 TCTGCATGCTCCTGTATGAGTG 60.159 50.000 20.33 0.00 38.33 3.51
54 57 0.108207 GGCTCTGCATGCTCCTGTAT 59.892 55.000 20.33 0.00 0.00 2.29
119 122 2.042259 TACCACATGCTGCAGCTGC 61.042 57.895 36.61 31.89 42.66 5.25
120 123 0.956902 TGTACCACATGCTGCAGCTG 60.957 55.000 36.61 30.76 42.66 4.24
121 124 0.034767 ATGTACCACATGCTGCAGCT 60.035 50.000 36.61 20.88 37.45 4.24
122 125 2.485677 ATGTACCACATGCTGCAGC 58.514 52.632 31.89 31.89 37.45 5.25
130 133 5.428457 TCTTCCATAGTTCCATGTACCACAT 59.572 40.000 0.00 0.00 39.91 3.21
134 137 6.049790 GTCTTCTTCCATAGTTCCATGTACC 58.950 44.000 0.00 0.00 0.00 3.34
151 156 2.839486 TGGCGTCATGAAGTCTTCTT 57.161 45.000 14.33 4.71 36.51 2.52
322 349 8.792830 TGTTTATCTAAAAGAAGGGTCTGATG 57.207 34.615 0.00 0.00 33.05 3.07
329 356 7.687941 TGCTTCTGTTTATCTAAAAGAAGGG 57.312 36.000 15.57 0.00 38.71 3.95
400 431 5.580691 CGGGCGATATCTTATTTGCTGATAA 59.419 40.000 0.34 0.00 0.00 1.75
402 433 3.935203 CGGGCGATATCTTATTTGCTGAT 59.065 43.478 0.34 0.00 0.00 2.90
403 434 3.006430 TCGGGCGATATCTTATTTGCTGA 59.994 43.478 0.34 0.00 0.00 4.26
517 592 3.873883 GTCCATGCTGCGCTCTGC 61.874 66.667 9.73 11.32 46.70 4.26
518 593 3.561213 CGTCCATGCTGCGCTCTG 61.561 66.667 9.73 0.00 0.00 3.35
554 629 1.009389 GTTTCTCTCGAGTGGTGCGG 61.009 60.000 13.13 0.00 0.00 5.69
556 631 1.009389 CCGTTTCTCTCGAGTGGTGC 61.009 60.000 13.13 3.12 0.00 5.01
577 654 3.062466 TCGCGACCTGCTAGTGCT 61.062 61.111 3.71 0.00 43.27 4.40
578 655 2.881352 GTCGCGACCTGCTAGTGC 60.881 66.667 28.61 0.00 43.27 4.40
579 656 2.577112 CGTCGCGACCTGCTAGTG 60.577 66.667 31.84 12.61 43.27 2.74
580 657 4.477975 GCGTCGCGACCTGCTAGT 62.478 66.667 31.84 0.00 43.27 2.57
726 839 2.680707 TGCGTGGGACGGATGGTA 60.681 61.111 0.00 0.00 42.82 3.25
842 961 0.028902 GTTGGTTGGTTCGTGTGCTC 59.971 55.000 0.00 0.00 0.00 4.26
925 1044 2.612212 CGTGGGTTGTGCATATAAGGAC 59.388 50.000 0.00 0.00 0.00 3.85
1941 2095 3.485463 AACGAGGAGTTGAATGGAACA 57.515 42.857 0.00 0.00 42.84 3.18
1979 2133 0.390860 GAGATGGAGACGGACATGGG 59.609 60.000 0.00 0.00 0.00 4.00
2066 2220 6.428159 TCTGTTTCTCTTGCAGGAGTAATTTC 59.572 38.462 23.56 10.58 35.11 2.17
2067 2221 6.299141 TCTGTTTCTCTTGCAGGAGTAATTT 58.701 36.000 23.56 0.00 35.11 1.82
2068 2222 5.869579 TCTGTTTCTCTTGCAGGAGTAATT 58.130 37.500 23.56 0.00 35.11 1.40
2105 2259 3.354089 AATTCACAGGAAAACAGTGCG 57.646 42.857 0.00 0.00 36.61 5.34
2146 2301 5.116180 CAACAGGAAAATAGTAGCGATCCA 58.884 41.667 0.00 0.00 0.00 3.41
2153 2308 5.437191 ACTCCCCAACAGGAAAATAGTAG 57.563 43.478 0.00 0.00 38.24 2.57
2243 2590 3.943691 TGCGGTTGGGTAACGCCT 61.944 61.111 4.64 0.00 37.69 5.52
2373 2720 5.968387 AATGTAAACTCGCATGTAGTAGC 57.032 39.130 3.66 0.00 0.00 3.58
2380 2727 7.186128 TGTGCTAATAAATGTAAACTCGCATG 58.814 34.615 0.00 0.00 0.00 4.06
2393 2740 6.237901 TCCGCCATATCTTGTGCTAATAAAT 58.762 36.000 0.00 0.00 0.00 1.40
2399 2746 2.039418 ACTCCGCCATATCTTGTGCTA 58.961 47.619 0.00 0.00 0.00 3.49
2404 2751 9.823647 AAAAGATATATACTCCGCCATATCTTG 57.176 33.333 13.56 0.00 44.28 3.02
2444 2983 7.453126 ACAGGTGATGGATAGAAATAGGACTAG 59.547 40.741 0.00 0.00 0.00 2.57
2451 2990 7.675161 TCTGAACAGGTGATGGATAGAAATA 57.325 36.000 1.93 0.00 0.00 1.40
2532 3077 4.035017 GCATGCATGACCACGTAAATAAC 58.965 43.478 30.64 3.15 0.00 1.89
2533 3078 3.691609 TGCATGCATGACCACGTAAATAA 59.308 39.130 30.64 0.00 0.00 1.40
2535 3080 2.090760 TGCATGCATGACCACGTAAAT 58.909 42.857 30.64 0.00 0.00 1.40
2537 3082 1.748950 ATGCATGCATGACCACGTAA 58.251 45.000 31.74 0.00 35.03 3.18
2538 3083 3.474942 ATGCATGCATGACCACGTA 57.525 47.368 31.74 0.21 35.03 3.57
2539 3084 4.324471 ATGCATGCATGACCACGT 57.676 50.000 31.74 10.74 35.03 4.49
2693 3242 6.658391 AGGATACCGAGTAACATATACTCACC 59.342 42.308 14.09 9.20 42.94 4.02
2735 3284 4.505217 CAACGCCGACGATGCTGC 62.505 66.667 0.00 0.00 43.93 5.25
2758 3307 0.879765 CAAGCAGCACCTCCAAGAAG 59.120 55.000 0.00 0.00 0.00 2.85
2771 3320 2.884087 ATCCGTCGCGTACCAAGCAG 62.884 60.000 5.77 0.00 34.19 4.24
2782 3331 4.208686 AAGGCTCCGATCCGTCGC 62.209 66.667 0.00 0.00 46.32 5.19
2784 3333 0.319125 GATCAAGGCTCCGATCCGTC 60.319 60.000 13.34 0.00 33.37 4.79
2785 3334 0.757188 AGATCAAGGCTCCGATCCGT 60.757 55.000 18.32 3.93 39.09 4.69
2786 3335 0.319383 CAGATCAAGGCTCCGATCCG 60.319 60.000 18.32 8.76 39.09 4.18
2787 3336 0.755686 ACAGATCAAGGCTCCGATCC 59.244 55.000 18.32 6.01 39.09 3.36
2788 3337 1.863267 CACAGATCAAGGCTCCGATC 58.137 55.000 15.56 15.56 38.66 3.69
2789 3338 0.179062 GCACAGATCAAGGCTCCGAT 60.179 55.000 0.00 0.00 0.00 4.18
2790 3339 1.219124 GCACAGATCAAGGCTCCGA 59.781 57.895 0.00 0.00 0.00 4.55
2791 3340 1.088340 CAGCACAGATCAAGGCTCCG 61.088 60.000 0.00 0.00 33.60 4.63
2794 3343 1.302285 CCCAGCACAGATCAAGGCT 59.698 57.895 0.00 0.00 36.99 4.58
2795 3344 1.001641 ACCCAGCACAGATCAAGGC 60.002 57.895 0.00 0.00 0.00 4.35
2796 3345 0.742281 CGACCCAGCACAGATCAAGG 60.742 60.000 0.00 0.00 0.00 3.61
2797 3346 0.247460 TCGACCCAGCACAGATCAAG 59.753 55.000 0.00 0.00 0.00 3.02
2798 3347 0.904649 ATCGACCCAGCACAGATCAA 59.095 50.000 0.00 0.00 0.00 2.57
2799 3348 0.904649 AATCGACCCAGCACAGATCA 59.095 50.000 0.00 0.00 0.00 2.92
2801 3350 1.134580 CAGAATCGACCCAGCACAGAT 60.135 52.381 0.00 0.00 0.00 2.90
2802 3351 0.247460 CAGAATCGACCCAGCACAGA 59.753 55.000 0.00 0.00 0.00 3.41
2803 3352 0.742281 CCAGAATCGACCCAGCACAG 60.742 60.000 0.00 0.00 0.00 3.66
2806 3355 1.617018 CCTCCAGAATCGACCCAGCA 61.617 60.000 0.00 0.00 0.00 4.41
2807 3356 1.144936 CCTCCAGAATCGACCCAGC 59.855 63.158 0.00 0.00 0.00 4.85
2808 3357 1.826024 CCCTCCAGAATCGACCCAG 59.174 63.158 0.00 0.00 0.00 4.45
2809 3358 2.367202 GCCCTCCAGAATCGACCCA 61.367 63.158 0.00 0.00 0.00 4.51
2811 3360 2.107141 CGCCCTCCAGAATCGACC 59.893 66.667 0.00 0.00 0.00 4.79
2812 3361 2.586357 GCGCCCTCCAGAATCGAC 60.586 66.667 0.00 0.00 0.00 4.20
2813 3362 3.074369 TGCGCCCTCCAGAATCGA 61.074 61.111 4.18 0.00 0.00 3.59
2814 3363 2.587194 CTGCGCCCTCCAGAATCG 60.587 66.667 4.18 0.00 32.03 3.34
2815 3364 2.899339 GCTGCGCCCTCCAGAATC 60.899 66.667 4.18 0.00 32.03 2.52
2816 3365 4.845580 CGCTGCGCCCTCCAGAAT 62.846 66.667 9.88 0.00 32.03 2.40
2859 3408 3.181463 ACAAATGCCAACAATGACAGCTT 60.181 39.130 0.00 0.00 0.00 3.74
2865 3414 5.916318 AGAAGAAACAAATGCCAACAATGA 58.084 33.333 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.