>input_sequence_65532
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ATGCCGGACGGCGGGGGCGGGTCGGACGGCGCGGGGACGGGGGCGGGGAGGATCAAGGGGTCGTGGAGCCCCGAGGAGGA
CGAGCTGCTGCGCGACGCCGTGGCGCGCCACGGGGCCAGGAACTGGACCGTCATCAGCGCCGAGATCCCCGGCCGGACGG
GCAAATCCTGCCGCCTGCGCTGGTGCAACCAGCTCAGCCCCGGGGTGCACCGCCGCGCCTTCACCCCCGACGAGGACCGC
CTCATCTTCGACCTCCACAGCAAGCACGGCAACAAGTGGGCCACCATCGCGCGCAAGCTCGTCGGCCGCACCGACAACTC
CGTCAAGAACCACTGGAACTCCACGCTGCGGAAACGCCGCAGGGCGGCCGCGGCCGCCGCCACCGCGGGCAACGCGGCGG
GCGGGCCCGTCTTCGCGCCTGCCGCTGCCATGTCGTTCCAATCTGTGGATCTCACCAAGGGCGG---GGAGGACGACTAC
GACGACGACGA---------CGACAGCGACGGCTCGGTGGAACCGCCCGCCAACGCCAAGCGGCCCCGCGTGGA------
------CGTCCCTCCCGCGGTGAAGGTGGACGACCAGGCGCCGCCGCCCGACCCGCCCACGTCGCTGTCACTCAGCCTGC
CGGGAACCGGGGTCGGCGCCGTCACCCCGCCGGCTCCCCCGGCGCCAGTGCCGGCGCCAGCGCCGGTGAAGGAGGCGTGG
ATGGAGAGCGCGAGGGCGATGCTGGAGCAGAACCCGTGGTTCATGGAGGCGATGAAGCGGATGGTCGAAGATGAGGTGCG
GCGGCAAATGGGCAGTGTGTGCTCCATCATGGCGTCCCTGGGCAGAGCCGGCGCGGCGGCGGCCACCCTGCCGACGGCCA
GGGTCGATCGGGCAGAAACGCACCCGGCAGGCGGTCGAGACCAACGGACGGACGGATAG---------------------
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>chr1D_1_TraesCS1D01G225200
TCGCATGCAGCCATCTTTTTTTTTCTACGCA--CATGCTCACGCGTGGGCGCACTCATACAGGAGCATGCAGAGCCCCTT
CTGGCTACACCTACACGTATACCACTACCAGCCATGAAACTGCAGCTGCAGCATGTGG--TACATGGAACTATGGAAGAA
GACTTCATGACGCCAAACCTTTAATCTTTAAGATAGTGTGCAATTTAATATTTG--------AATTACTCAAAATTTTGT
GGTACTACTTAGTAACTTGTAAA--------------ACTTGTAAAGTTGTAGTCATAAATTGGTCGGTTTAGAAGTAAT
TTTTTGCAGCACACAAACATAAAACCAGCATCAGAC-CCTTCTTTTAGATAAAC---AGAAGCATCGTAACGGCGACAAG
CTTCAGATTGGTACTACAACTCATCGACTCTTAT------------------------------------------CAGC
AAATAAGATATCGCCCGACGGCACCAGTATTTGGCGGATTGCGACCGATCCTC--CCTCCCTCCCTCCCCCACGGCACGT
CGCACCCTGGGGCTGGAGATAACAGGAAACGGCAGAGCGCAGCATGGACGCCTCGCGGGCCACCTTCCCCGCAC--CACT
CGAGAGAAACGGTAGCACTAGCAGGTCGCGACGCGTGACATCCAGCCCC-----GCCTGGCCTGGCCTGGCCCGGCACAT
CGCGCGCGCAC-------------------------------GCACGCACGCACGCCGTGTAGCCAGCCGGGCATGCAAA
TGCGTCCATCGCCGGCGGTTCGCGGGTGACGCCGGCCAT-----ACCATCCGTCCCACGCACCGCCCGCCGGAAACCACC
GAAAACGCCCAAAAACCCCACGGAAAACGCCCGAAACGCGAAACTGTAAAGCGCGCCCGCCCACCTAACACGCCCGCA-G
GAGCACACGAACCAACCAACGCCCTCCCCTCTCTCGCCCCGCATCCCGTCCCCCGGCCCAACCGCACGCCCACGTCCACG
TACGTCCTTATATGCACAACCCACGCGGCAGCCGCAGCCG--AGACCGAGACCGACGCGGGTAGAGAGGGGAGAGGAGGC
ATGCCGGACGGCGGGGGCGGGTCGGACGGCGCGGGGACGGGGGCGGGGAGGATCAAGGGGTCGTGGAGCCCCGAGGAGGA
CGAGCTGCTGCGCGACGCCGTGGCGCGCCACGGGGCCAGGAACTGGACCGTCATCAGCGCCGAGATCCCCGGCCGGACGG
GCAAATCCTGCCGCCTGCGCTGGTGCAACCAGCTCAGCCCCGGGGTGCACCGCCGCGCCTTCACCCCCGACGAGGACCGC
CTCATCTTCGACCTCCACAGCAAGCACGGCAACAAGTGGGCCACCATCGCGCGCAAGCTCGTCGGCCGCACCGACAACTC
CGTCAAGAACCACTGGAACTCCACGCTGCGGAAACGCCGCAGGGCGGCCGCGGCCGCCGCCACCGCGGGCAACGCGGCGG
GCGGGCCCGTCTTCGCGCCTGCCGCTGCCATGTCGTTCCAATCTGTGGATCTCACCAAGGGCGG---GGAGGACGACTAC
GACGACGACGA---------CGACAGCGACGGCTCGGTGGAACCGCCCGCCAACGCCAAGCGGCCCCGCGTGGA------
------CGTCCCTCCCGCGGTGAAGGTGGACGACCAGGCGCCGCCGCCCGACCCGCCCACGTCGCTGTCACTCAGCCTGC
CGGGAACCGGGGTCGGCGCCGTCACCCCGCCGGCTCCCCCGGCGCCAGTGCCGGCGCCAGCGCCGGTGAAGGAGGCGTGG
ATGGAGAGCGCGAGGGCGATGCTGGAGCAGAACCCGTGGTTCATGGAGGCGATGAAGCGGATGGTCGAAGATGAGGTGCG
GCGGCAAATGGGCAGTGTGTGCTCCATCATGGCGTCCCTGGGCAGAGCCGGCGCGGCGGCGGCCACCCTGCCGACGGCCA
GGGTCGATCGGGCAGAAACGCACCCGGCAGGCGGTCGAGACCAACGGACGGACGGATAGACGAGACGCC---------AA
GCATCTGCATTGCATGTTCCATTCAACTCCTCGTTGTTACTCGTCGATCTCACCCATGTCCGTCTCCATCTCCATTTCCA
TCCCCTGCTAGTAGAATCTAGCTAGTAGTTTTTTTTTTGTTGGTTTATTTACCTTAGAAGAAATTACTCCTGCAAGAGAA
ACAGAAGCATTTCGGATGCGCACTGT-TTTCCTGTGAATTAGTTGGGCCGGTTGGATCGATGGATCGCTACTATTTTCC-
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-------------------------------TGTTGGGGAGTTCGTTCAGGTGTGGTTGCGATTATCACTGAATGTGTTG
TGCGTGCGTTGAGTTTGGTTGGGTGGGCGAGGCGTTACCCAACCGCACGCCCGCACGTCGCCGTCACGTCGTCTCGGCTC
CTCGCCCAGTAACGGTTTTGCTGGTGGTTTTCAAGTGAGTACGCCAGTGGGCTCACACTTGACGGGCGTTTCCGTTACTG
CTACTACATGCGAGTTTACATTTATTAGCACAAGATATGGCGGAGTATATATCTTTTT----------------------
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----------TTTTTCACTTTGCTAGTCCTATTTCTAT-CCATCACCTGTTCAGATTTTGAGGCGTATTAAATTAATCAT
AAGAAAACTCACTATATGCATGTGTT-----TTTTTGTTATTTACGTGGTCATGCATGCATGCATTGTACTCTAATTAAT
AAATTTGTAAA---TAAACTTGAGAAAG-GAACGTATTAATTATGTTCTTTTGCAAACTATAAAATTTATCAAATTCTTG
GTTGGGAAGTTTTTTGAATTAGGATCTGTAAACCGGAAGGGGGTGAGTATATGTTACTCGGTATCCTAGGACACGTCCAG
GCAGCAGCATCGTCGGCGTTGCATTCCTTCTTGGAGGTGCTGCTTGGTACGCGACGGATCGGAGCCTTGATCTGTGCTGG
GTCGATTCTGGAGGGCGCAGCGGTGGCACGTCATCCGTGCTTTTGTCAAGCTGTCATTGTTGGCATTTGTTTCTTCTTCT
TTTTTTCTTTTTCTTTTCTTTTG
>chr1A_2
-CGCATGCAGCCATCTTTTTTTTTTCCTACGCGCATGCTCACGCGTGGGCGTACTCCTACAGGAGCATGCAGAG-CCCTT
CTCGCTACACCTACACGTATACCACTACCAGCCATGAGA------CTGCAGCCTGTAG--TACATGGAAAG--------A
GACTCCATGACGCCAAACCTTTAATCTTTAAGATGGTGTGCAATTTAATTAGTATTTAAATAAATTACTCAAAAGATTGT
GATAATACTTTTTTTAGGGAAGATTGTGATAATACTTACTTGTAAAGTTGTAGTCGTAAATTGATCGATTTAGAAGTAGT
TTTTTGCAGCACGCAAACATAAAACCAGTATCAGAAACCTTTTTTCAGATAAACACAAGAAGCATCGTGACGGCGACAAG
CTTCAGATTGGTACTACAACTCATCGACTCATCAATCAAAAAAATAAAAA------CTCAAAACGGCCTTCCAAGGCAGC
AAATAAGATATGGCCCGACGGCACCAGTATTCGGCGGATTGCGACCGACCCTC--CCTCCCTCCC----CCACGGCACGT
CGCACCCTGGGGCTGGAGATAACAGGAAAC---------------GGACGTCTCGCGGGCCACCTTCCGCCCACAGCACT
CGAGAGAAACGGC------AGCAGGTCGCGACGCGTGACGTCCAGCCCCGCCTGGCCTGGCCTGGCCTGGCCCGGCACAT
CGCGCGCGCAC-------------------------------GC------------CGTGTAGCCAGCCGGGCATGCAAA
TGCGTCCATCGCCGGCGGTTCGCGGGTGACGCCGGCCAGGGGCAACCATCCGTCCCACGCACCGCCCGCCGGAAACCACC
GAAAACGCCCAAAAACCCCACGGAAAACGCCCGAAACGCGAAACTGTAAAGCGCGCCCGCCCACCTAACACGCCCGCA-G
CAGCACACGAACCAACCAAC---------------GCCCCGCATCCCGTCCCCCGGCCCAACCGCACGCCCACGTCCACG
TACCTCCTTATATGCACAACCCCCGCGGCAGCCGCAGCCGACAGACCGAGACCGACGCGGCTAGAGAGGGGAGAGGAGGC
ATGCCGGACGGCGGGGGCGGGTCGGATGGCGCGGGCGCGGGGGCGGGGAGGATCAAGGGGTCGTGGAGCCCCGAGGAGGA
CGAGCTGCTGCGCGACGCCGTGGCGCGCCACGGGGCCCGGAACTGGACCGTCATCAGCGCCGAGATCCCCGGCCGGACGG
GCAAGTCCTGCCGCCTGCGCTGGTGCAACCAGCTCAGCCCCGGGGTGCACCGCCGCGCCTTCACCCCCGACGAGGACCGC
CTCATCTTCGACCTCCACAGCAAGCACGGCAACAAGTGGGCCACCATCGCGCGCAAGCTCGTCGGCCGCACCGACAACTC
CGTCAAGAACCACTGGAACTCCACGCTCCGGAAGCGCCGCAGGGCGGCCGCGGCCGCCGCCACCGCCGGCAACGCGGCGG
GCGGGCCCGCCTTCGCGCCCGCCTCTGCCATGTCGTTCCAATCTGTGGATCTCACCAAGGGCGG---GGAGGACGACTAC
GACGACGACGACGGCGACAGCGACAGCGACGGCTCGGTGGAACCGCCCGCCAGCGCCAAGCGGCCCCGCGTGGACGT---
------CGTCCCTCCCGCGGTGAAGGTGGACGACCGGGCGCCGCCGCCCGACCCGCCCACGTCGCTGTCGCTCAGCCTGC
CGGGAACCGGGGTCGGCGCCGTCATCCCGCCGACTCCCCCGGCGCCGGTGCCAGCGCCAGCGCCGGCGAAGGAGCCCTGG
ATGGAGAGCGCGAGGGCGATGCTGGAGCAGAACCCGTGGTTCATGGAGGCGATGAAGCGGATGGTCGAAGACGAGGTGCG
GCGGCAAATGGGCAGCGTGTGCTCCATCATGGCGTCCCTGGGCAGGGCCGGCGCGGCGGCGGCCACCCTGCCGACGGCCA
GGGTCGACCGATCAGAAACGCACCCGGCAGGCGGTCGAGACCAACGGACGGACGGATAGACGTACGAGACGCGTCAAGAA
GCGGCTGCATTGCAAGTTTCACTCAACTCCTCGTTGTCACTCGTCGATCTCGTCCATGTCCGTCTCCATCTCCATTTCCG
TCCCCTGCTAGTAGAATCTAGCTAGC----TTTTTTTTGTTGTTTTATTTACCTTAGAA---ATTACATCTTCAAGAGAA
ACAGAAGCATTTCGGATGAGCACTGTGTTTCCTGTGAATTAGTTGGGCCGGTTGGATCGACGGATTGGTGCTATTTTCC-
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-------------------------------TGCTGGGGAGTTCGTTCGGGTGTGGTTGCGATTATCACTGAATGTGTTG
TGCGTGCGTTGAGTTTGGTTGGGTGGGCGCGGCGTTACCCAACCGCACGCACGCACGTCGCCGTCACGTCGTCTCGGCTC
CTCGCCCAGTAACGGTTTTGCTGGTGGTTT-CAAGTGAGTACACCAGTGGGCTCACACTTGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTTTTCACTTTGTTAGTCCCATTTCTATCCCATCACCTGTTCAGATTTTGAGGCGTATTAAATTAATCAT
AAGAAAACTCGCTATATGCATGTATT-----TTTTTTATTTAA---TGGTCATGCATGCATGCATTGC-----AATTAAT
ACAGTTGTAAT---TTTTTTTAAGAAAACGAACGTATTGATTAGGTTCTTTCGCAAACTATAAAATTTAATAAATTCTTA
GTTGGGAAGTTTTTTGAATTAGGATCTGTAAACCGGAAGGGAGTGAGTATATGTTACTCGGTATCCTAGGACACGTCCAG
GCAACATCATCGTCGGCGTTGCATTCTTTCTTGGAGGTGTTGCTTGGTTTTTTTTTTGAGGGTCGGAGGTGTTGCTTGGT
A--------------CGCAGCGGTGGCATGTCATCCGTGCTTTTGTCGAGCTGCCATTGTTGGCATTTGTTTCTTCTT-T
TTTGTTCTTTTTCTTTTCTTTTG
>chr1B_63
----------------------------------------------------------------GCATGCAGAGCCCCTT
CTGGCTACACCTACACGTATACCACTACCAGCCATGAACTGTAGCATGTACAGTAGTACATACATGGAACTATGGGAGAA
GACTTCATGACGCCAAACCTTTAATCTTTAAAAGTAACTTT---------------------------------------
-----------------------------------------------TTGAAGTCATGAATTGTTCGATTTAGAAGTCAC
TTTTTGCAGCACACAGACATAAGACCAGTATCAGAAACCTTCTTCTAGATAAAC---AGAAGCATCGTAACGGCGACAAG
CTTCAGATTGGTACTACAACTCATCGACTCATCAATCAAAAAAATAAAAAATAAAACTCAAAACGGCCTTCCAAGGCAGC
AAATAAGATATGGCCCGACGGCACCAGTATTTGGCGGATTGCGACCGATCCTCATCCTCCCTCCC----CCACGGCACGT
CGCACCTCGGGAG---------------------------------------------------------CCACACCACT
CGAGAGAAGCGGT------AGCAGGTCGCGACGCGTGACGTACAGCCCCGCCTGGCCTGGCCTGGCCTGGCACGCAGCGC
CCACACGCACGCCGTGCGCGGGTGACTGACTGTGTGATCGGTGC------------AGTGTGGCCAGCCGGCCATGCAAA
TGCATCCAGCCCCGGCGGTTCGCGGGTGACGCCGGCAAGGCAAC-CCATCCGCCCCACGCACCACCCGGCGGAAACCACC
GAAAACGCCCAAAAACCCCACCGAAAACGCCCGAAACGCGAAACTGTAAAGCGCGTCCGCCCACCTAACGCGCCCGCATG
CAGCACACGAACCAACCAACGCTCTGCCCTCTCTCGCCCCGCATCCCGTCCCCCGGCCCAACCGCACGCCCACGT-----
-ACATCCTTATATGCACAACCCCCGCGGCAGCCGCAGCCGA--GACCGAGACCGACGCGGGAAGAGGGAAGAGCAGG---
ATGCCGGACGGCGGGGGCGGGTCGGACGGCGCGGGGGCGGGGGCGGGGAGGATCAAGGGGTCGTGGAGCCCCGAGGAGGA
CGAGCTGCTGCGCGACGCCGTGGCGCGCCACGGGGCCAGGAACTGGACCGTCATCAGCGCCGAGATCCCCGGCCGGACGG
GCAAGTCCTGCCGCCTGCGCTGGTGCAACCAGCTCAGCCCCGGGGTGCACCGCCGCGCCTTCACCCCCGACGAGGACCGC
CTCATCTTCGAGCTCCACAGCAAGCACGGCAACAAGTGGGCCACCATCGCGCGCAAGCTCGTCGGCCGCACCGACAACTC
CGTCAAGAACCACTGGAACTCCACGCTCCGGAAACGCCGCAGCGCGG---------------CCGCGGGCAACGCAGCGG
GCGGGCCCGTCTTCGCGCCTGCCGCTGCCATGTCGTTCCAATCTGTGGATCTCACCAGGGGCGCGGAGGAGGACGACGAC
GACGACGACGACAGCGACGC------------CTCGGTGGAACCGCCCGCCAACGCCAAGCGGCCCCGCGTGGACGTCGG
CGGTGCCGTCCCTCCCGCGGTGAAGGTGGACCACCAGGCGCCGCCGCCCGACCCGCCCACGTCGCTGTCACTCAGCCTGC
CGGGAACCGGGGTCGGCGCCGTCACCCCGCCGGCTCCCCCGGCGCCAGTGCCGGCGCCAGCGCCGGTGAAGGAGGCGTGG
ATGGAGAGCGCGAGGGCGATGCTGGAGCAGAACCCGTGGTTCATGGAGGCGATGAAGCGGATGGTCGAAGATGAGGTGCG
GCGGCAAATGGGCAGTGTGTGCTCCATCATGGCGTCCCTGGGCAGAGCCGGCGCGGCGGCGGCCACCCTGCCGACGGCCA
GGGCCGATCGAGCAGAAACGCACCCGGCAGGCGGTCGAAACCGACGGACGGACGGGTAGACGAGACGCC---------AA
GCATCTGCATTGCAAGTTCCATTCAACTCCTTGTTGTTGCTCGTCGATCTCATTCATGTCCGTCTCCATTTCCATT----
--CCCTACTAGTAGAATCTAGCTAGC----TTTTTTT-----GTTGATTCACCTTAGAG---ATTACTCCTGCAAGAGAA
ACAGAAGCATTTCGGATGAGCACTGT-TTTCCTGTGAATTAGTTGGGCCGGTTGGATCGACGGATCGGTACTATTTTCTT
TGAGCAATGCTACACCTAGGTAAAGTTACGTACAGATTTTACGTAATAGGCAATGTGTAGGACTGCGATTGGATGGATGG
ATGTGGCAGGGGCCCACACGGGTGAAAATCAGGGGGGGGCGATAGATTTGTTAGGCAGGTTACGTAACTCTTCGTAGGTT
GTTTTCGTAGGTGTAGTATTATTGATTTTCTTGTTGGGGAGTTCGTTCAGGTGTGGTTGCGATTATCACTGAATGTGTTG
TGCGTGCGTTGAGTTTGGTTGGGTGGGCGCGGCGTTACCCAACCGCACGCACGCACGTCGCCGTCACGTCGTCTCGGCTC
CTCGCCCAGTAACGGTTTTGCTGGTGGTTTTGAAGTGAGTACGCCAGTGGGCACACACTTGACGGACGTTTCCGTTACTA
CTACTA-ATGCGAGTTTACGTTTATCAGCAAAAGATGTGGCGGAGTATATCTCTTTTT----------------------
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----------TTTTTCACTTTGTTAGTCCCATTTCCATCCCATCACCTGTTCAGATTTCGAGGCGTATTAAATTAATTAT
AAGAAAATTCAACAATGCATGTAAAAAGTTCTTGTTTATTTAG---TGGC----CATTCATGCATTGC-----AATCAAT
ACATTTATAAACACTTTTTTTTAGAAAGCGAGCACATTAGTTAGGTTCTTTAGCAAACTACAAAATTTATCAGATTCTTG
GTTGGGAAGATTTTTGAATTAGGATCTGTAAACCGGAAGGGAGGGAGTATATGTTACTCAGTATC---------------
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>SNPs
S-----------------------SSSSS-S--------------------S----S-----------------------
---------------------------------------SSSSSS-------S---S------------------S----
----------------------------------S--------------SSS-S--------------------SS----
-S--S-----SS-SSSSS-S-S-----------------------------------------S---S------------
----------------------------S------S--------------------------------------------
------------------------------S-SS----------------------------------------------
-----------S-----------------------------------------------------SSSS-----------
------------------------------SSSSSSSSSSSSSSS-----S-----------------S-S---------
-------------SSSSSS--------------------S----------------------------------------
--------------------------------------------SSSSSSSSSSSS------------------------
--------------------------------------S-----------------------------------------
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S---------------------S--S------------------------------------------------------
---S------------------S---------------------------------------------------------
------------------------------------S-------------------------------------------
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----S---------------------------------------------------------------------------
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---------------------------S----------------------------------------------------
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----------S---------------------------------------------------------------------
--------------S-------------------------------------S--------------------------S
-------------------------SSSSS-----------------------------SSS------------------
------------------S-----------------------------------------S------S------------
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-----------------------------S--------------------S-----------------------------
-----------------------------------------------------------------S-------------S
------S------------S-----S----S-----S-------------S-----------------------------
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----------------------S------S--------------------------------------------------
-----------------------S------------SS-S-SSSSS---------------------SSSSSS-------
-S-------------SSSS--S---------------------S-------S----------------------------
-----------------------------------------S--------------------------------------
---S--S-------------------S------------S--------SSSSSSSSSSSS--SSSSSS-SSS--SSSS-S
SSSSSSSSSSSSSSS-------------S------------------S-----S------------------------S-
---S-------------------
>forward_599
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-------------------TAACAGGAAACGGCAGAGCG-----------------------------------------
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>reverse_2133
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----------------------------------------------------CCCATGTCCGTCTCCATCTC--------
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