Multiple sequence alignment - TraesCS1D01G225000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G225000 chr1D 100.000 2774 0 0 1 2774 313616470 313619243 0.000000e+00 5123.0
1 TraesCS1D01G225000 chr1A 94.946 1959 38 17 591 2517 393611937 393613866 0.000000e+00 3013.0
2 TraesCS1D01G225000 chr1A 86.973 261 17 11 2514 2774 393614122 393614365 7.570000e-71 278.0
3 TraesCS1D01G225000 chr1A 97.727 44 1 0 380 423 393611905 393611948 2.960000e-10 76.8
4 TraesCS1D01G225000 chr1A 87.879 66 3 5 2704 2766 61122580 61122643 3.830000e-09 73.1
5 TraesCS1D01G225000 chr1B 94.091 1980 58 24 591 2561 423823140 423825069 0.000000e+00 2953.0
6 TraesCS1D01G225000 chr1B 88.636 88 7 2 345 431 423822254 423822339 1.360000e-18 104.0
7 TraesCS1D01G225000 chr1B 93.182 44 2 1 2615 2658 423825073 423825115 2.310000e-06 63.9
8 TraesCS1D01G225000 chr7A 90.476 168 16 0 423 590 43990067 43989900 3.600000e-54 222.0
9 TraesCS1D01G225000 chr7A 89.286 168 18 0 423 590 44069977 44069810 7.780000e-51 211.0
10 TraesCS1D01G225000 chr7B 88.068 176 17 4 423 597 15829797 15829625 3.620000e-49 206.0
11 TraesCS1D01G225000 chr4B 85.526 76 6 5 2700 2772 51868429 51868356 1.070000e-09 75.0
12 TraesCS1D01G225000 chr3A 86.154 65 6 3 2704 2766 107613799 107613862 1.780000e-07 67.6
13 TraesCS1D01G225000 chr5B 90.196 51 4 1 2704 2753 658921293 658921343 6.410000e-07 65.8
14 TraesCS1D01G225000 chr3D 90.476 42 3 1 2713 2753 21912153 21912112 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G225000 chr1D 313616470 313619243 2773 False 5123.0 5123 100.000000 1 2774 1 chr1D.!!$F1 2773
1 TraesCS1D01G225000 chr1A 393611905 393614365 2460 False 1122.6 3013 93.215333 380 2774 3 chr1A.!!$F2 2394
2 TraesCS1D01G225000 chr1B 423822254 423825115 2861 False 1040.3 2953 91.969667 345 2658 3 chr1B.!!$F1 2313

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
159 160 0.099613 AGCTGCAGTCATACGAGACG 59.9 55.0 16.64 0.0 43.24 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 2468 1.652563 CGTCGATCCGCCATAGTCA 59.347 57.895 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.851304 GTGAGCCCAATCATTTCCCA 58.149 50.000 0.00 0.00 0.00 4.37
20 21 1.753073 GTGAGCCCAATCATTTCCCAG 59.247 52.381 0.00 0.00 0.00 4.45
21 22 1.640149 TGAGCCCAATCATTTCCCAGA 59.360 47.619 0.00 0.00 0.00 3.86
22 23 2.042842 TGAGCCCAATCATTTCCCAGAA 59.957 45.455 0.00 0.00 0.00 3.02
23 24 2.428530 GAGCCCAATCATTTCCCAGAAC 59.571 50.000 0.00 0.00 0.00 3.01
24 25 2.178580 GCCCAATCATTTCCCAGAACA 58.821 47.619 0.00 0.00 0.00 3.18
25 26 2.767960 GCCCAATCATTTCCCAGAACAT 59.232 45.455 0.00 0.00 0.00 2.71
26 27 3.181472 GCCCAATCATTTCCCAGAACATC 60.181 47.826 0.00 0.00 0.00 3.06
27 28 3.385755 CCCAATCATTTCCCAGAACATCC 59.614 47.826 0.00 0.00 0.00 3.51
28 29 3.385755 CCAATCATTTCCCAGAACATCCC 59.614 47.826 0.00 0.00 0.00 3.85
29 30 4.284178 CAATCATTTCCCAGAACATCCCT 58.716 43.478 0.00 0.00 0.00 4.20
30 31 4.614967 ATCATTTCCCAGAACATCCCTT 57.385 40.909 0.00 0.00 0.00 3.95
31 32 3.700538 TCATTTCCCAGAACATCCCTTG 58.299 45.455 0.00 0.00 0.00 3.61
32 33 3.333381 TCATTTCCCAGAACATCCCTTGA 59.667 43.478 0.00 0.00 0.00 3.02
33 34 3.893753 TTTCCCAGAACATCCCTTGAA 57.106 42.857 0.00 0.00 0.00 2.69
34 35 3.439857 TTCCCAGAACATCCCTTGAAG 57.560 47.619 0.00 0.00 0.00 3.02
35 36 1.635487 TCCCAGAACATCCCTTGAAGG 59.365 52.381 3.69 3.69 34.30 3.46
36 37 1.467920 CCAGAACATCCCTTGAAGGC 58.532 55.000 5.50 0.00 32.73 4.35
37 38 1.467920 CAGAACATCCCTTGAAGGCC 58.532 55.000 5.50 0.00 32.73 5.19
38 39 1.075601 AGAACATCCCTTGAAGGCCA 58.924 50.000 5.01 0.00 32.73 5.36
39 40 1.428912 AGAACATCCCTTGAAGGCCAA 59.571 47.619 5.01 0.00 32.73 4.52
51 52 4.963276 TGAAGGCCAAGAAAATCGTATG 57.037 40.909 5.01 0.00 0.00 2.39
52 53 4.584874 TGAAGGCCAAGAAAATCGTATGA 58.415 39.130 5.01 0.00 0.00 2.15
53 54 5.007034 TGAAGGCCAAGAAAATCGTATGAA 58.993 37.500 5.01 0.00 0.00 2.57
54 55 4.965119 AGGCCAAGAAAATCGTATGAAC 57.035 40.909 5.01 0.00 0.00 3.18
55 56 4.331968 AGGCCAAGAAAATCGTATGAACA 58.668 39.130 5.01 0.00 0.00 3.18
56 57 4.764823 AGGCCAAGAAAATCGTATGAACAA 59.235 37.500 5.01 0.00 0.00 2.83
57 58 5.242838 AGGCCAAGAAAATCGTATGAACAAA 59.757 36.000 5.01 0.00 0.00 2.83
58 59 5.344933 GGCCAAGAAAATCGTATGAACAAAC 59.655 40.000 0.00 0.00 0.00 2.93
59 60 5.059221 GCCAAGAAAATCGTATGAACAAACG 59.941 40.000 0.00 0.00 40.40 3.60
60 61 5.567534 CCAAGAAAATCGTATGAACAAACGG 59.432 40.000 0.00 0.00 39.52 4.44
61 62 6.367421 CAAGAAAATCGTATGAACAAACGGA 58.633 36.000 0.00 0.00 39.52 4.69
62 63 6.548441 AGAAAATCGTATGAACAAACGGAA 57.452 33.333 0.00 0.00 39.52 4.30
63 64 6.961576 AGAAAATCGTATGAACAAACGGAAA 58.038 32.000 0.00 0.00 39.52 3.13
64 65 7.590279 AGAAAATCGTATGAACAAACGGAAAT 58.410 30.769 0.00 0.00 39.52 2.17
65 66 7.749126 AGAAAATCGTATGAACAAACGGAAATC 59.251 33.333 0.00 0.00 39.52 2.17
66 67 4.571375 TCGTATGAACAAACGGAAATCG 57.429 40.909 0.00 0.00 45.88 3.34
67 68 4.236147 TCGTATGAACAAACGGAAATCGA 58.764 39.130 0.00 0.00 42.43 3.59
68 69 4.685165 TCGTATGAACAAACGGAAATCGAA 59.315 37.500 0.00 0.00 42.43 3.71
69 70 4.779523 CGTATGAACAAACGGAAATCGAAC 59.220 41.667 0.00 0.00 42.43 3.95
70 71 3.612472 TGAACAAACGGAAATCGAACC 57.388 42.857 0.00 0.00 42.43 3.62
71 72 2.943690 TGAACAAACGGAAATCGAACCA 59.056 40.909 0.00 0.00 42.43 3.67
72 73 3.002862 TGAACAAACGGAAATCGAACCAG 59.997 43.478 0.00 0.00 42.43 4.00
73 74 2.567985 ACAAACGGAAATCGAACCAGT 58.432 42.857 0.00 0.00 42.43 4.00
74 75 2.946990 ACAAACGGAAATCGAACCAGTT 59.053 40.909 0.00 0.78 42.43 3.16
75 76 4.128643 ACAAACGGAAATCGAACCAGTTA 58.871 39.130 0.00 0.00 42.43 2.24
76 77 4.212636 ACAAACGGAAATCGAACCAGTTAG 59.787 41.667 0.00 0.00 42.43 2.34
77 78 2.968675 ACGGAAATCGAACCAGTTAGG 58.031 47.619 0.00 0.00 42.43 2.69
78 79 2.564062 ACGGAAATCGAACCAGTTAGGA 59.436 45.455 0.00 0.00 42.43 2.94
79 80 3.007182 ACGGAAATCGAACCAGTTAGGAA 59.993 43.478 0.00 0.00 42.43 3.36
80 81 4.189231 CGGAAATCGAACCAGTTAGGAAT 58.811 43.478 0.00 0.00 42.43 3.01
81 82 4.034048 CGGAAATCGAACCAGTTAGGAATG 59.966 45.833 0.00 0.00 42.43 2.67
82 83 4.201920 GGAAATCGAACCAGTTAGGAATGC 60.202 45.833 0.00 0.00 41.22 3.56
83 84 2.396590 TCGAACCAGTTAGGAATGCC 57.603 50.000 0.00 0.00 41.22 4.40
84 85 1.626321 TCGAACCAGTTAGGAATGCCA 59.374 47.619 0.00 0.00 41.22 4.92
85 86 2.238646 TCGAACCAGTTAGGAATGCCAT 59.761 45.455 0.00 0.00 41.22 4.40
86 87 3.016736 CGAACCAGTTAGGAATGCCATT 58.983 45.455 0.00 0.00 41.22 3.16
87 88 3.443681 CGAACCAGTTAGGAATGCCATTT 59.556 43.478 0.00 0.00 41.22 2.32
88 89 4.675146 CGAACCAGTTAGGAATGCCATTTG 60.675 45.833 0.00 0.00 41.22 2.32
89 90 3.099141 ACCAGTTAGGAATGCCATTTGG 58.901 45.455 0.00 2.71 41.22 3.28
90 91 3.245586 ACCAGTTAGGAATGCCATTTGGA 60.246 43.478 9.89 0.00 41.22 3.53
91 92 3.768757 CCAGTTAGGAATGCCATTTGGAA 59.231 43.478 0.00 0.00 41.22 3.53
92 93 4.142093 CCAGTTAGGAATGCCATTTGGAAG 60.142 45.833 0.00 0.00 41.22 3.46
93 94 4.026052 AGTTAGGAATGCCATTTGGAAGG 58.974 43.478 0.00 0.00 37.39 3.46
107 108 3.767902 TGGAAGGCCAATTTTTGAAGG 57.232 42.857 5.01 0.00 42.49 3.46
108 109 3.044894 TGGAAGGCCAATTTTTGAAGGT 58.955 40.909 5.01 0.00 42.49 3.50
109 110 3.457749 TGGAAGGCCAATTTTTGAAGGTT 59.542 39.130 5.01 0.00 42.49 3.50
110 111 4.080072 TGGAAGGCCAATTTTTGAAGGTTT 60.080 37.500 5.01 0.00 42.49 3.27
111 112 4.515191 GGAAGGCCAATTTTTGAAGGTTTC 59.485 41.667 5.01 0.00 0.00 2.78
112 113 5.368145 GAAGGCCAATTTTTGAAGGTTTCT 58.632 37.500 5.01 0.00 0.00 2.52
113 114 6.463755 GGAAGGCCAATTTTTGAAGGTTTCTA 60.464 38.462 5.01 0.00 0.00 2.10
114 115 6.101650 AGGCCAATTTTTGAAGGTTTCTAG 57.898 37.500 5.01 0.00 0.00 2.43
115 116 5.012046 AGGCCAATTTTTGAAGGTTTCTAGG 59.988 40.000 5.01 0.00 0.00 3.02
116 117 4.690748 GCCAATTTTTGAAGGTTTCTAGGC 59.309 41.667 0.00 0.00 0.00 3.93
117 118 5.237815 CCAATTTTTGAAGGTTTCTAGGCC 58.762 41.667 0.00 0.00 0.00 5.19
118 119 5.012046 CCAATTTTTGAAGGTTTCTAGGCCT 59.988 40.000 11.78 11.78 36.51 5.19
119 120 6.210584 CCAATTTTTGAAGGTTTCTAGGCCTA 59.789 38.462 13.09 13.09 34.15 3.93
120 121 7.315890 CAATTTTTGAAGGTTTCTAGGCCTAG 58.684 38.462 30.94 30.94 34.15 3.02
121 122 3.629142 TTGAAGGTTTCTAGGCCTAGC 57.371 47.619 31.76 19.13 34.15 3.42
122 123 2.834113 TGAAGGTTTCTAGGCCTAGCT 58.166 47.619 31.76 20.85 34.15 3.32
123 124 3.990369 TGAAGGTTTCTAGGCCTAGCTA 58.010 45.455 31.76 20.13 34.15 3.32
124 125 3.961408 TGAAGGTTTCTAGGCCTAGCTAG 59.039 47.826 31.76 14.35 34.15 3.42
125 126 3.975479 AGGTTTCTAGGCCTAGCTAGA 57.025 47.619 31.76 16.58 32.49 2.43
126 127 3.568443 AGGTTTCTAGGCCTAGCTAGAC 58.432 50.000 31.76 23.91 32.58 2.59
127 128 2.629137 GGTTTCTAGGCCTAGCTAGACC 59.371 54.545 31.76 27.57 32.58 3.85
128 129 3.297736 GTTTCTAGGCCTAGCTAGACCA 58.702 50.000 31.76 12.58 32.58 4.02
129 130 2.961531 TCTAGGCCTAGCTAGACCAG 57.038 55.000 31.76 19.69 33.32 4.00
130 131 2.136863 TCTAGGCCTAGCTAGACCAGT 58.863 52.381 31.76 10.55 33.32 4.00
131 132 2.158593 TCTAGGCCTAGCTAGACCAGTG 60.159 54.545 31.76 15.43 33.32 3.66
132 133 0.631753 AGGCCTAGCTAGACCAGTGA 59.368 55.000 25.91 0.00 0.00 3.41
133 134 1.219213 AGGCCTAGCTAGACCAGTGAT 59.781 52.381 25.91 4.00 0.00 3.06
134 135 2.447429 AGGCCTAGCTAGACCAGTGATA 59.553 50.000 25.91 0.00 0.00 2.15
135 136 3.076785 AGGCCTAGCTAGACCAGTGATAT 59.923 47.826 25.91 2.55 0.00 1.63
136 137 4.292571 AGGCCTAGCTAGACCAGTGATATA 59.707 45.833 25.91 0.00 0.00 0.86
137 138 5.017490 GGCCTAGCTAGACCAGTGATATAA 58.983 45.833 22.70 0.00 0.00 0.98
138 139 5.659079 GGCCTAGCTAGACCAGTGATATAAT 59.341 44.000 22.70 0.00 0.00 1.28
139 140 6.183360 GGCCTAGCTAGACCAGTGATATAATC 60.183 46.154 22.70 0.00 0.00 1.75
140 141 6.378564 GCCTAGCTAGACCAGTGATATAATCA 59.621 42.308 22.70 0.00 36.84 2.57
141 142 7.416213 GCCTAGCTAGACCAGTGATATAATCAG 60.416 44.444 22.70 0.00 40.53 2.90
142 143 6.279513 AGCTAGACCAGTGATATAATCAGC 57.720 41.667 0.00 0.00 40.53 4.26
143 144 6.015918 AGCTAGACCAGTGATATAATCAGCT 58.984 40.000 0.00 0.00 40.53 4.24
144 145 6.071447 AGCTAGACCAGTGATATAATCAGCTG 60.071 42.308 7.63 7.63 40.53 4.24
145 146 4.892433 AGACCAGTGATATAATCAGCTGC 58.108 43.478 9.47 0.00 40.53 5.25
146 147 4.346127 AGACCAGTGATATAATCAGCTGCA 59.654 41.667 9.47 0.00 40.53 4.41
147 148 4.639334 ACCAGTGATATAATCAGCTGCAG 58.361 43.478 10.11 10.11 40.53 4.41
148 149 4.102210 ACCAGTGATATAATCAGCTGCAGT 59.898 41.667 16.64 0.00 40.53 4.40
149 150 4.689812 CCAGTGATATAATCAGCTGCAGTC 59.310 45.833 16.64 7.83 40.53 3.51
150 151 5.295152 CAGTGATATAATCAGCTGCAGTCA 58.705 41.667 16.64 4.63 40.53 3.41
151 152 5.932883 CAGTGATATAATCAGCTGCAGTCAT 59.067 40.000 16.64 1.85 40.53 3.06
152 153 7.095270 CAGTGATATAATCAGCTGCAGTCATA 58.905 38.462 16.64 2.58 40.53 2.15
153 154 7.063191 CAGTGATATAATCAGCTGCAGTCATAC 59.937 40.741 16.64 0.00 40.53 2.39
154 155 6.034363 GTGATATAATCAGCTGCAGTCATACG 59.966 42.308 16.64 0.00 40.53 3.06
155 156 2.967599 AATCAGCTGCAGTCATACGA 57.032 45.000 16.64 3.63 0.00 3.43
156 157 2.505628 ATCAGCTGCAGTCATACGAG 57.494 50.000 16.64 0.00 0.00 4.18
157 158 1.463674 TCAGCTGCAGTCATACGAGA 58.536 50.000 16.64 0.00 0.00 4.04
158 159 1.133216 TCAGCTGCAGTCATACGAGAC 59.867 52.381 16.64 0.00 38.81 3.36
159 160 0.099613 AGCTGCAGTCATACGAGACG 59.900 55.000 16.64 0.00 43.24 4.18
160 161 1.475441 GCTGCAGTCATACGAGACGC 61.475 60.000 16.64 3.70 43.24 5.19
161 162 0.099613 CTGCAGTCATACGAGACGCT 59.900 55.000 5.25 0.00 43.24 5.07
162 163 0.179163 TGCAGTCATACGAGACGCTG 60.179 55.000 16.77 9.55 43.24 5.18
163 164 0.179161 GCAGTCATACGAGACGCTGT 60.179 55.000 0.00 0.00 43.24 4.40
164 165 1.816370 CAGTCATACGAGACGCTGTC 58.184 55.000 0.00 1.15 43.24 3.51
165 166 1.398739 CAGTCATACGAGACGCTGTCT 59.601 52.381 10.33 10.33 46.42 3.41
174 175 2.051334 AGACGCTGTCTCTGCTATCT 57.949 50.000 5.54 0.00 38.71 1.98
175 176 1.675483 AGACGCTGTCTCTGCTATCTG 59.325 52.381 5.54 0.00 38.71 2.90
176 177 0.743688 ACGCTGTCTCTGCTATCTGG 59.256 55.000 0.00 0.00 0.00 3.86
177 178 1.028130 CGCTGTCTCTGCTATCTGGA 58.972 55.000 0.00 0.00 0.00 3.86
178 179 1.268999 CGCTGTCTCTGCTATCTGGAC 60.269 57.143 0.00 0.00 0.00 4.02
179 180 2.031120 GCTGTCTCTGCTATCTGGACT 58.969 52.381 0.00 0.00 0.00 3.85
180 181 2.034558 GCTGTCTCTGCTATCTGGACTC 59.965 54.545 0.00 0.00 0.00 3.36
181 182 3.554934 CTGTCTCTGCTATCTGGACTCT 58.445 50.000 0.00 0.00 0.00 3.24
182 183 3.550820 TGTCTCTGCTATCTGGACTCTC 58.449 50.000 0.00 0.00 0.00 3.20
183 184 2.884639 GTCTCTGCTATCTGGACTCTCC 59.115 54.545 0.00 0.00 36.96 3.71
184 185 2.511637 TCTCTGCTATCTGGACTCTCCA 59.488 50.000 0.00 0.00 45.98 3.86
195 196 4.021102 TGGACTCTCCAGAAAAATGACC 57.979 45.455 0.00 0.00 42.67 4.02
196 197 3.394274 TGGACTCTCCAGAAAAATGACCA 59.606 43.478 0.00 0.00 42.67 4.02
197 198 3.753797 GGACTCTCCAGAAAAATGACCAC 59.246 47.826 0.00 0.00 36.28 4.16
198 199 4.389374 GACTCTCCAGAAAAATGACCACA 58.611 43.478 0.00 0.00 0.00 4.17
199 200 4.792068 ACTCTCCAGAAAAATGACCACAA 58.208 39.130 0.00 0.00 0.00 3.33
200 201 4.580580 ACTCTCCAGAAAAATGACCACAAC 59.419 41.667 0.00 0.00 0.00 3.32
201 202 4.792068 TCTCCAGAAAAATGACCACAACT 58.208 39.130 0.00 0.00 0.00 3.16
202 203 5.200483 TCTCCAGAAAAATGACCACAACTT 58.800 37.500 0.00 0.00 0.00 2.66
203 204 5.656416 TCTCCAGAAAAATGACCACAACTTT 59.344 36.000 0.00 0.00 0.00 2.66
204 205 6.154363 TCTCCAGAAAAATGACCACAACTTTT 59.846 34.615 0.00 0.00 32.03 2.27
205 206 7.340743 TCTCCAGAAAAATGACCACAACTTTTA 59.659 33.333 0.00 0.00 30.63 1.52
206 207 7.262048 TCCAGAAAAATGACCACAACTTTTAC 58.738 34.615 0.00 0.00 30.63 2.01
207 208 7.038659 CCAGAAAAATGACCACAACTTTTACA 58.961 34.615 0.00 0.00 30.63 2.41
208 209 7.710475 CCAGAAAAATGACCACAACTTTTACAT 59.290 33.333 0.00 0.00 30.63 2.29
209 210 8.755018 CAGAAAAATGACCACAACTTTTACATC 58.245 33.333 0.00 0.00 30.63 3.06
210 211 7.926018 AGAAAAATGACCACAACTTTTACATCC 59.074 33.333 0.00 0.00 30.63 3.51
211 212 6.723298 AAATGACCACAACTTTTACATCCA 57.277 33.333 0.00 0.00 0.00 3.41
212 213 6.723298 AATGACCACAACTTTTACATCCAA 57.277 33.333 0.00 0.00 0.00 3.53
213 214 6.723298 ATGACCACAACTTTTACATCCAAA 57.277 33.333 0.00 0.00 0.00 3.28
214 215 5.897050 TGACCACAACTTTTACATCCAAAC 58.103 37.500 0.00 0.00 0.00 2.93
215 216 5.654650 TGACCACAACTTTTACATCCAAACT 59.345 36.000 0.00 0.00 0.00 2.66
216 217 6.144078 ACCACAACTTTTACATCCAAACTC 57.856 37.500 0.00 0.00 0.00 3.01
217 218 5.068591 ACCACAACTTTTACATCCAAACTCC 59.931 40.000 0.00 0.00 0.00 3.85
218 219 5.212194 CACAACTTTTACATCCAAACTCCG 58.788 41.667 0.00 0.00 0.00 4.63
219 220 4.885325 ACAACTTTTACATCCAAACTCCGT 59.115 37.500 0.00 0.00 0.00 4.69
220 221 5.358725 ACAACTTTTACATCCAAACTCCGTT 59.641 36.000 0.00 0.00 0.00 4.44
221 222 6.127563 ACAACTTTTACATCCAAACTCCGTTT 60.128 34.615 0.00 0.00 36.05 3.60
222 223 6.459670 ACTTTTACATCCAAACTCCGTTTT 57.540 33.333 0.00 0.00 33.10 2.43
223 224 6.500910 ACTTTTACATCCAAACTCCGTTTTC 58.499 36.000 0.00 0.00 33.10 2.29
224 225 6.095720 ACTTTTACATCCAAACTCCGTTTTCA 59.904 34.615 0.00 0.00 33.10 2.69
225 226 6.452494 TTTACATCCAAACTCCGTTTTCAA 57.548 33.333 0.00 0.00 33.10 2.69
226 227 6.642707 TTACATCCAAACTCCGTTTTCAAT 57.357 33.333 0.00 0.00 33.10 2.57
227 228 4.870363 ACATCCAAACTCCGTTTTCAATG 58.130 39.130 0.00 0.00 33.10 2.82
228 229 4.340950 ACATCCAAACTCCGTTTTCAATGT 59.659 37.500 0.00 0.00 33.10 2.71
229 230 4.993029 TCCAAACTCCGTTTTCAATGTT 57.007 36.364 0.00 0.00 33.10 2.71
230 231 4.677584 TCCAAACTCCGTTTTCAATGTTG 58.322 39.130 0.00 0.00 33.10 3.33
231 232 4.158764 TCCAAACTCCGTTTTCAATGTTGT 59.841 37.500 0.00 0.00 33.10 3.32
232 233 4.867608 CCAAACTCCGTTTTCAATGTTGTT 59.132 37.500 0.00 0.00 33.10 2.83
233 234 5.350091 CCAAACTCCGTTTTCAATGTTGTTT 59.650 36.000 0.00 0.00 33.10 2.83
234 235 6.239945 CAAACTCCGTTTTCAATGTTGTTTG 58.760 36.000 0.00 0.00 33.10 2.93
235 236 5.066968 ACTCCGTTTTCAATGTTGTTTGT 57.933 34.783 0.00 0.00 0.00 2.83
236 237 5.474825 ACTCCGTTTTCAATGTTGTTTGTT 58.525 33.333 0.00 0.00 0.00 2.83
237 238 5.347364 ACTCCGTTTTCAATGTTGTTTGTTG 59.653 36.000 0.00 0.00 0.00 3.33
238 239 4.627467 TCCGTTTTCAATGTTGTTTGTTGG 59.373 37.500 0.00 0.00 0.00 3.77
239 240 4.627467 CCGTTTTCAATGTTGTTTGTTGGA 59.373 37.500 0.00 0.00 0.00 3.53
240 241 5.120830 CCGTTTTCAATGTTGTTTGTTGGAA 59.879 36.000 0.00 0.00 0.00 3.53
241 242 6.183360 CCGTTTTCAATGTTGTTTGTTGGAAT 60.183 34.615 0.00 0.00 0.00 3.01
242 243 6.899243 CGTTTTCAATGTTGTTTGTTGGAATC 59.101 34.615 0.00 0.00 0.00 2.52
243 244 7.412346 CGTTTTCAATGTTGTTTGTTGGAATCA 60.412 33.333 0.00 0.00 0.00 2.57
244 245 8.397148 GTTTTCAATGTTGTTTGTTGGAATCAT 58.603 29.630 0.00 0.00 0.00 2.45
245 246 9.605275 TTTTCAATGTTGTTTGTTGGAATCATA 57.395 25.926 0.00 0.00 0.00 2.15
246 247 9.775854 TTTCAATGTTGTTTGTTGGAATCATAT 57.224 25.926 0.00 0.00 0.00 1.78
247 248 8.760103 TCAATGTTGTTTGTTGGAATCATATG 57.240 30.769 0.00 0.00 0.00 1.78
248 249 8.583296 TCAATGTTGTTTGTTGGAATCATATGA 58.417 29.630 8.10 8.10 0.00 2.15
249 250 9.205719 CAATGTTGTTTGTTGGAATCATATGAA 57.794 29.630 9.99 0.00 0.00 2.57
250 251 9.947433 AATGTTGTTTGTTGGAATCATATGAAT 57.053 25.926 9.99 0.02 0.00 2.57
251 252 8.760103 TGTTGTTTGTTGGAATCATATGAATG 57.240 30.769 9.99 0.00 0.00 2.67
252 253 8.583296 TGTTGTTTGTTGGAATCATATGAATGA 58.417 29.630 9.99 0.00 46.01 2.57
253 254 8.863049 GTTGTTTGTTGGAATCATATGAATGAC 58.137 33.333 9.99 5.49 44.79 3.06
254 255 8.120140 TGTTTGTTGGAATCATATGAATGACA 57.880 30.769 9.99 7.87 44.79 3.58
255 256 8.028354 TGTTTGTTGGAATCATATGAATGACAC 58.972 33.333 9.99 5.28 44.79 3.67
256 257 7.943079 TTGTTGGAATCATATGAATGACACT 57.057 32.000 9.99 0.00 44.79 3.55
257 258 7.324354 TGTTGGAATCATATGAATGACACTG 57.676 36.000 9.99 0.00 44.79 3.66
258 259 7.111466 TGTTGGAATCATATGAATGACACTGA 58.889 34.615 9.99 0.00 44.79 3.41
259 260 7.776500 TGTTGGAATCATATGAATGACACTGAT 59.224 33.333 9.99 0.00 44.79 2.90
260 261 9.276590 GTTGGAATCATATGAATGACACTGATA 57.723 33.333 9.99 0.00 44.79 2.15
261 262 8.837788 TGGAATCATATGAATGACACTGATAC 57.162 34.615 9.99 0.00 44.79 2.24
262 263 8.431222 TGGAATCATATGAATGACACTGATACA 58.569 33.333 9.99 0.00 44.79 2.29
263 264 8.715998 GGAATCATATGAATGACACTGATACAC 58.284 37.037 9.99 0.00 44.79 2.90
264 265 9.486497 GAATCATATGAATGACACTGATACACT 57.514 33.333 9.99 0.00 44.79 3.55
265 266 9.842775 AATCATATGAATGACACTGATACACTT 57.157 29.630 9.99 0.00 44.79 3.16
266 267 8.652810 TCATATGAATGACACTGATACACTTG 57.347 34.615 1.98 0.00 37.20 3.16
267 268 8.260114 TCATATGAATGACACTGATACACTTGT 58.740 33.333 1.98 0.00 37.20 3.16
268 269 9.533253 CATATGAATGACACTGATACACTTGTA 57.467 33.333 0.00 0.00 34.84 2.41
269 270 9.755804 ATATGAATGACACTGATACACTTGTAG 57.244 33.333 0.00 0.00 33.52 2.74
270 271 6.993079 TGAATGACACTGATACACTTGTAGT 58.007 36.000 0.00 0.00 33.52 2.73
271 272 8.117813 TGAATGACACTGATACACTTGTAGTA 57.882 34.615 0.00 0.00 33.52 1.82
272 273 8.749354 TGAATGACACTGATACACTTGTAGTAT 58.251 33.333 0.00 0.00 35.01 2.12
273 274 9.239002 GAATGACACTGATACACTTGTAGTATC 57.761 37.037 6.43 6.43 45.05 2.24
286 287 9.950496 ACACTTGTAGTATCAGATCTTGATTTT 57.050 29.630 11.34 5.32 44.14 1.82
290 291 8.654230 TGTAGTATCAGATCTTGATTTTGAGC 57.346 34.615 11.34 0.00 44.14 4.26
291 292 8.260114 TGTAGTATCAGATCTTGATTTTGAGCA 58.740 33.333 11.34 4.24 44.14 4.26
292 293 9.270640 GTAGTATCAGATCTTGATTTTGAGCAT 57.729 33.333 11.34 0.00 44.14 3.79
293 294 8.749026 AGTATCAGATCTTGATTTTGAGCATT 57.251 30.769 11.34 0.00 44.14 3.56
294 295 9.186837 AGTATCAGATCTTGATTTTGAGCATTT 57.813 29.630 11.34 0.00 44.14 2.32
295 296 9.798994 GTATCAGATCTTGATTTTGAGCATTTT 57.201 29.630 11.34 0.00 44.14 1.82
296 297 8.703604 ATCAGATCTTGATTTTGAGCATTTTG 57.296 30.769 0.00 0.00 44.14 2.44
297 298 7.888424 TCAGATCTTGATTTTGAGCATTTTGA 58.112 30.769 0.00 0.00 0.00 2.69
298 299 8.361889 TCAGATCTTGATTTTGAGCATTTTGAA 58.638 29.630 0.00 0.00 0.00 2.69
299 300 8.984764 CAGATCTTGATTTTGAGCATTTTGAAA 58.015 29.630 0.00 0.00 0.00 2.69
300 301 9.550406 AGATCTTGATTTTGAGCATTTTGAAAA 57.450 25.926 0.00 0.00 0.00 2.29
414 415 2.147958 GTGCCGTGACTGATGGTTAAA 58.852 47.619 0.00 0.00 32.49 1.52
417 418 2.550606 GCCGTGACTGATGGTTAAAACA 59.449 45.455 0.00 0.00 32.49 2.83
421 422 4.260990 CGTGACTGATGGTTAAAACAAGCA 60.261 41.667 0.00 0.00 0.00 3.91
425 426 2.961741 TGATGGTTAAAACAAGCAGGCA 59.038 40.909 0.00 0.00 0.00 4.75
428 429 3.230134 TGGTTAAAACAAGCAGGCAGAT 58.770 40.909 0.00 0.00 0.00 2.90
429 430 4.402829 TGGTTAAAACAAGCAGGCAGATA 58.597 39.130 0.00 0.00 0.00 1.98
430 431 5.016173 TGGTTAAAACAAGCAGGCAGATAT 58.984 37.500 0.00 0.00 0.00 1.63
432 433 6.036470 GGTTAAAACAAGCAGGCAGATATTC 58.964 40.000 0.00 0.00 0.00 1.75
433 434 4.361451 AAAACAAGCAGGCAGATATTCG 57.639 40.909 0.00 0.00 0.00 3.34
434 435 1.303309 ACAAGCAGGCAGATATTCGC 58.697 50.000 0.00 0.00 0.00 4.70
435 436 1.134280 ACAAGCAGGCAGATATTCGCT 60.134 47.619 0.00 0.00 0.00 4.93
436 437 1.945394 CAAGCAGGCAGATATTCGCTT 59.055 47.619 0.00 0.00 40.16 4.68
437 438 1.590932 AGCAGGCAGATATTCGCTTG 58.409 50.000 5.40 5.40 38.19 4.01
439 440 1.302366 CAGGCAGATATTCGCTTGCA 58.698 50.000 0.00 0.00 0.00 4.08
442 443 1.003116 GGCAGATATTCGCTTGCACAG 60.003 52.381 0.00 0.00 0.00 3.66
444 445 2.547211 GCAGATATTCGCTTGCACAGAT 59.453 45.455 0.00 0.00 0.00 2.90
445 446 3.606384 GCAGATATTCGCTTGCACAGATG 60.606 47.826 0.00 0.00 0.00 2.90
447 448 4.746611 CAGATATTCGCTTGCACAGATGTA 59.253 41.667 0.00 0.00 0.00 2.29
449 450 2.455674 TTCGCTTGCACAGATGTAGT 57.544 45.000 0.00 0.00 0.00 2.73
450 451 2.455674 TCGCTTGCACAGATGTAGTT 57.544 45.000 0.00 0.00 0.00 2.24
453 454 2.224079 CGCTTGCACAGATGTAGTTGTT 59.776 45.455 0.00 0.00 0.00 2.83
454 455 3.303990 CGCTTGCACAGATGTAGTTGTTT 60.304 43.478 0.00 0.00 0.00 2.83
455 456 4.222114 GCTTGCACAGATGTAGTTGTTTC 58.778 43.478 0.00 0.00 0.00 2.78
456 457 4.023707 GCTTGCACAGATGTAGTTGTTTCT 60.024 41.667 0.00 0.00 0.00 2.52
457 458 5.506317 GCTTGCACAGATGTAGTTGTTTCTT 60.506 40.000 0.00 0.00 0.00 2.52
458 459 5.673337 TGCACAGATGTAGTTGTTTCTTC 57.327 39.130 0.00 0.00 0.00 2.87
459 460 5.368145 TGCACAGATGTAGTTGTTTCTTCT 58.632 37.500 0.00 0.00 0.00 2.85
461 462 6.423905 TGCACAGATGTAGTTGTTTCTTCTAC 59.576 38.462 0.00 0.00 35.86 2.59
462 463 6.128526 GCACAGATGTAGTTGTTTCTTCTACC 60.129 42.308 0.00 0.00 34.83 3.18
463 464 6.089551 CACAGATGTAGTTGTTTCTTCTACCG 59.910 42.308 0.00 0.00 34.83 4.02
465 466 3.311106 TGTAGTTGTTTCTTCTACCGCG 58.689 45.455 0.00 0.00 34.83 6.46
466 467 2.806608 AGTTGTTTCTTCTACCGCGA 57.193 45.000 8.23 0.00 0.00 5.87
467 468 2.673833 AGTTGTTTCTTCTACCGCGAG 58.326 47.619 8.23 0.00 0.00 5.03
468 469 2.035576 AGTTGTTTCTTCTACCGCGAGT 59.964 45.455 8.23 6.57 0.00 4.18
469 470 3.254166 AGTTGTTTCTTCTACCGCGAGTA 59.746 43.478 8.23 7.53 0.00 2.59
482 483 2.494918 GAGTAGTCCGCATGCCGT 59.505 61.111 13.15 0.00 34.38 5.68
483 484 1.153628 GAGTAGTCCGCATGCCGTT 60.154 57.895 13.15 1.84 34.38 4.44
484 485 1.146358 GAGTAGTCCGCATGCCGTTC 61.146 60.000 13.15 4.22 34.38 3.95
485 486 1.447140 GTAGTCCGCATGCCGTTCA 60.447 57.895 13.15 0.00 34.38 3.18
486 487 1.153647 TAGTCCGCATGCCGTTCAG 60.154 57.895 13.15 0.00 34.38 3.02
487 488 2.572095 TAGTCCGCATGCCGTTCAGG 62.572 60.000 13.15 6.40 44.97 3.86
488 489 4.015406 TCCGCATGCCGTTCAGGT 62.015 61.111 13.15 0.00 43.70 4.00
489 490 3.055719 CCGCATGCCGTTCAGGTT 61.056 61.111 13.15 0.00 43.70 3.50
491 492 1.285641 CGCATGCCGTTCAGGTTTT 59.714 52.632 13.15 0.00 43.70 2.43
492 493 0.318614 CGCATGCCGTTCAGGTTTTT 60.319 50.000 13.15 0.00 43.70 1.94
524 1074 8.533569 TTTTCTCTCCCAAGAAAACTTTATGT 57.466 30.769 7.52 0.00 45.60 2.29
525 1075 9.635404 TTTTCTCTCCCAAGAAAACTTTATGTA 57.365 29.630 7.52 0.00 45.60 2.29
527 1077 9.635404 TTCTCTCCCAAGAAAACTTTATGTAAA 57.365 29.630 0.00 0.00 32.42 2.01
528 1078 9.807921 TCTCTCCCAAGAAAACTTTATGTAAAT 57.192 29.630 0.00 0.00 0.00 1.40
530 1080 9.807921 TCTCCCAAGAAAACTTTATGTAAATCT 57.192 29.630 0.00 0.00 0.00 2.40
563 1113 8.491331 ACTCTCTCTTCTTCTAATTGAAATGC 57.509 34.615 0.00 0.00 33.79 3.56
564 1114 8.099537 ACTCTCTCTTCTTCTAATTGAAATGCA 58.900 33.333 0.00 0.00 33.79 3.96
565 1115 8.489990 TCTCTCTTCTTCTAATTGAAATGCAG 57.510 34.615 0.00 0.00 33.79 4.41
566 1116 7.065563 TCTCTCTTCTTCTAATTGAAATGCAGC 59.934 37.037 0.00 0.00 33.79 5.25
567 1117 5.872635 TCTTCTTCTAATTGAAATGCAGCG 58.127 37.500 0.00 0.00 33.79 5.18
568 1118 4.019919 TCTTCTAATTGAAATGCAGCGC 57.980 40.909 0.00 0.00 33.79 5.92
570 1120 3.680642 TCTAATTGAAATGCAGCGCTC 57.319 42.857 7.13 2.98 0.00 5.03
571 1121 2.355756 TCTAATTGAAATGCAGCGCTCC 59.644 45.455 7.13 0.00 0.00 4.70
572 1122 0.174162 AATTGAAATGCAGCGCTCCC 59.826 50.000 7.13 1.39 0.00 4.30
573 1123 1.996786 ATTGAAATGCAGCGCTCCCG 61.997 55.000 7.13 0.00 37.57 5.14
584 1134 2.815647 GCTCCCGCCAGTTTCTCG 60.816 66.667 0.00 0.00 0.00 4.04
585 1135 2.125512 CTCCCGCCAGTTTCTCGG 60.126 66.667 0.00 0.00 42.58 4.63
588 1138 1.302192 CCCGCCAGTTTCTCGGAAA 60.302 57.895 1.05 0.00 45.53 3.13
593 1236 3.181510 CCGCCAGTTTCTCGGAAAATAAG 60.182 47.826 0.00 0.00 45.53 1.73
637 1280 4.794278 TCGCTACAGAAGATAAACCACA 57.206 40.909 0.00 0.00 0.00 4.17
650 1293 1.525941 AACCACACCGAATAAACCCG 58.474 50.000 0.00 0.00 0.00 5.28
681 1325 0.668706 CCTCTCTGTGGCGTCAACTG 60.669 60.000 0.00 0.00 0.00 3.16
737 1382 1.271856 TGCATGTCCGTTCCCTTCTA 58.728 50.000 0.00 0.00 0.00 2.10
747 1392 3.181485 CCGTTCCCTTCTATCTCACTCAC 60.181 52.174 0.00 0.00 0.00 3.51
748 1393 3.697045 CGTTCCCTTCTATCTCACTCACT 59.303 47.826 0.00 0.00 0.00 3.41
777 1422 0.809385 GCTCGCTGTACTCCACTGTA 59.191 55.000 0.00 0.00 0.00 2.74
778 1423 1.467713 GCTCGCTGTACTCCACTGTAC 60.468 57.143 0.00 0.00 42.10 2.90
779 1424 0.800631 TCGCTGTACTCCACTGTACG 59.199 55.000 0.00 0.00 44.01 3.67
781 1426 0.526662 GCTGTACTCCACTGTACGCT 59.473 55.000 0.00 0.00 44.01 5.07
782 1427 1.467713 GCTGTACTCCACTGTACGCTC 60.468 57.143 0.00 0.00 44.01 5.03
783 1428 2.085320 CTGTACTCCACTGTACGCTCT 58.915 52.381 0.00 0.00 44.01 4.09
784 1429 2.082231 TGTACTCCACTGTACGCTCTC 58.918 52.381 0.00 0.00 44.01 3.20
785 1430 2.290134 TGTACTCCACTGTACGCTCTCT 60.290 50.000 0.00 0.00 44.01 3.10
786 1431 1.455248 ACTCCACTGTACGCTCTCTC 58.545 55.000 0.00 0.00 0.00 3.20
787 1432 1.003812 ACTCCACTGTACGCTCTCTCT 59.996 52.381 0.00 0.00 0.00 3.10
788 1433 1.668751 CTCCACTGTACGCTCTCTCTC 59.331 57.143 0.00 0.00 0.00 3.20
789 1434 1.279558 TCCACTGTACGCTCTCTCTCT 59.720 52.381 0.00 0.00 0.00 3.10
867 1512 2.286425 CACTCCATCCCCACCCCT 60.286 66.667 0.00 0.00 0.00 4.79
869 1514 2.374342 CTCCATCCCCACCCCTCT 59.626 66.667 0.00 0.00 0.00 3.69
870 1515 1.768077 CTCCATCCCCACCCCTCTC 60.768 68.421 0.00 0.00 0.00 3.20
871 1516 2.263099 CTCCATCCCCACCCCTCTCT 62.263 65.000 0.00 0.00 0.00 3.10
878 1523 0.396974 CCCACCCCTCTCTCTCTCTG 60.397 65.000 0.00 0.00 0.00 3.35
985 1630 6.196434 CCTCCCTCTATCTTTATACCTACCC 58.804 48.000 0.00 0.00 0.00 3.69
986 1631 5.824421 TCCCTCTATCTTTATACCTACCCG 58.176 45.833 0.00 0.00 0.00 5.28
1572 2220 4.595538 GCGTCCACGGTGACCACA 62.596 66.667 10.28 0.00 40.23 4.17
1814 2468 0.910338 AGCTCCTGACATGCATGAGT 59.090 50.000 32.75 11.94 40.25 3.41
2018 2690 5.699458 GGTAATGTCGTGGTATTGGGAATAG 59.301 44.000 0.00 0.00 0.00 1.73
2187 2862 9.502145 CCCTTTTGAAAATGCTTTAAGAAAAAC 57.498 29.630 0.00 0.00 0.00 2.43
2320 3005 9.985318 CTATTTTTGCTGTCTGAAAAGAGATAG 57.015 33.333 0.00 0.00 34.98 2.08
2473 3158 7.148255 ACACATATATGTTGCGTGTGAGAATTT 60.148 33.333 15.85 0.00 41.93 1.82
2483 3168 4.498345 GCGTGTGAGAATTTTACCCAAACA 60.498 41.667 0.00 0.00 0.00 2.83
2512 3197 6.161855 ACTGAACGGAGCATCTTCATTATA 57.838 37.500 0.00 0.00 33.73 0.98
2561 3505 9.357652 GATTTGCCGTTTAATATAATCATGCAT 57.642 29.630 0.00 0.00 0.00 3.96
2562 3506 8.741101 TTTGCCGTTTAATATAATCATGCATC 57.259 30.769 0.00 0.00 0.00 3.91
2563 3507 7.686438 TGCCGTTTAATATAATCATGCATCT 57.314 32.000 0.00 0.00 0.00 2.90
2609 3553 8.757982 ATTCATGCAATATTTACTCCTTCAGT 57.242 30.769 0.00 0.00 39.41 3.41
2610 3554 8.579850 TTCATGCAATATTTACTCCTTCAGTT 57.420 30.769 0.00 0.00 36.43 3.16
2611 3555 8.579850 TCATGCAATATTTACTCCTTCAGTTT 57.420 30.769 0.00 0.00 36.43 2.66
2612 3556 9.023962 TCATGCAATATTTACTCCTTCAGTTTT 57.976 29.630 0.00 0.00 36.43 2.43
2613 3557 9.643693 CATGCAATATTTACTCCTTCAGTTTTT 57.356 29.630 0.00 0.00 36.43 1.94
2726 3670 7.172019 TGTTACTCCATCCGTTTCTTTTTACTC 59.828 37.037 0.00 0.00 0.00 2.59
2740 3684 8.883789 TTCTTTTTACTCCGCGTATTAATTTG 57.116 30.769 4.92 0.00 0.00 2.32
2742 3686 9.149225 TCTTTTTACTCCGCGTATTAATTTGTA 57.851 29.630 4.92 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.753073 CTGGGAAATGATTGGGCTCAC 59.247 52.381 0.00 0.00 0.00 3.51
1 2 1.640149 TCTGGGAAATGATTGGGCTCA 59.360 47.619 0.00 0.00 0.00 4.26
2 3 2.428530 GTTCTGGGAAATGATTGGGCTC 59.571 50.000 0.00 0.00 0.00 4.70
3 4 2.225343 TGTTCTGGGAAATGATTGGGCT 60.225 45.455 0.00 0.00 0.00 5.19
4 5 2.178580 TGTTCTGGGAAATGATTGGGC 58.821 47.619 0.00 0.00 0.00 5.36
5 6 3.385755 GGATGTTCTGGGAAATGATTGGG 59.614 47.826 0.00 0.00 0.00 4.12
6 7 3.385755 GGGATGTTCTGGGAAATGATTGG 59.614 47.826 0.00 0.00 0.00 3.16
7 8 4.284178 AGGGATGTTCTGGGAAATGATTG 58.716 43.478 0.00 0.00 0.00 2.67
8 9 4.614967 AGGGATGTTCTGGGAAATGATT 57.385 40.909 0.00 0.00 0.00 2.57
9 10 4.017222 TCAAGGGATGTTCTGGGAAATGAT 60.017 41.667 0.00 0.00 0.00 2.45
10 11 3.333381 TCAAGGGATGTTCTGGGAAATGA 59.667 43.478 0.00 0.00 0.00 2.57
11 12 3.700538 TCAAGGGATGTTCTGGGAAATG 58.299 45.455 0.00 0.00 0.00 2.32
12 13 4.347607 CTTCAAGGGATGTTCTGGGAAAT 58.652 43.478 0.00 0.00 0.00 2.17
13 14 3.500289 CCTTCAAGGGATGTTCTGGGAAA 60.500 47.826 0.00 0.00 0.00 3.13
14 15 2.041620 CCTTCAAGGGATGTTCTGGGAA 59.958 50.000 0.00 0.00 0.00 3.97
15 16 1.635487 CCTTCAAGGGATGTTCTGGGA 59.365 52.381 0.00 0.00 0.00 4.37
16 17 1.957113 GCCTTCAAGGGATGTTCTGGG 60.957 57.143 5.33 0.00 35.37 4.45
17 18 1.467920 GCCTTCAAGGGATGTTCTGG 58.532 55.000 5.33 0.00 35.37 3.86
18 19 1.272092 TGGCCTTCAAGGGATGTTCTG 60.272 52.381 5.33 0.00 35.37 3.02
19 20 1.075601 TGGCCTTCAAGGGATGTTCT 58.924 50.000 5.33 0.00 35.37 3.01
20 21 1.821136 CTTGGCCTTCAAGGGATGTTC 59.179 52.381 5.33 0.00 46.81 3.18
21 22 1.928868 CTTGGCCTTCAAGGGATGTT 58.071 50.000 5.33 0.00 46.81 2.71
22 23 3.677963 CTTGGCCTTCAAGGGATGT 57.322 52.632 5.33 0.00 46.81 3.06
29 30 5.007034 TCATACGATTTTCTTGGCCTTCAA 58.993 37.500 3.32 0.00 0.00 2.69
30 31 4.584874 TCATACGATTTTCTTGGCCTTCA 58.415 39.130 3.32 0.00 0.00 3.02
31 32 5.106317 TGTTCATACGATTTTCTTGGCCTTC 60.106 40.000 3.32 0.00 0.00 3.46
32 33 4.764823 TGTTCATACGATTTTCTTGGCCTT 59.235 37.500 3.32 0.00 0.00 4.35
33 34 4.331968 TGTTCATACGATTTTCTTGGCCT 58.668 39.130 3.32 0.00 0.00 5.19
34 35 4.695217 TGTTCATACGATTTTCTTGGCC 57.305 40.909 0.00 0.00 0.00 5.36
35 36 5.059221 CGTTTGTTCATACGATTTTCTTGGC 59.941 40.000 9.44 0.00 40.03 4.52
36 37 5.567534 CCGTTTGTTCATACGATTTTCTTGG 59.432 40.000 14.96 0.00 40.03 3.61
37 38 6.367421 TCCGTTTGTTCATACGATTTTCTTG 58.633 36.000 14.96 0.00 40.03 3.02
38 39 6.548441 TCCGTTTGTTCATACGATTTTCTT 57.452 33.333 14.96 0.00 40.03 2.52
39 40 6.548441 TTCCGTTTGTTCATACGATTTTCT 57.452 33.333 14.96 0.00 40.03 2.52
40 41 7.252865 CGATTTCCGTTTGTTCATACGATTTTC 60.253 37.037 14.96 7.54 40.03 2.29
41 42 6.521821 CGATTTCCGTTTGTTCATACGATTTT 59.478 34.615 14.96 1.10 40.03 1.82
42 43 6.019152 CGATTTCCGTTTGTTCATACGATTT 58.981 36.000 14.96 0.82 40.03 2.17
43 44 5.349270 TCGATTTCCGTTTGTTCATACGATT 59.651 36.000 14.96 0.55 40.03 3.34
44 45 4.865925 TCGATTTCCGTTTGTTCATACGAT 59.134 37.500 14.96 3.66 40.03 3.73
45 46 4.236147 TCGATTTCCGTTTGTTCATACGA 58.764 39.130 14.96 0.00 40.03 3.43
46 47 4.571375 TCGATTTCCGTTTGTTCATACG 57.429 40.909 8.37 8.37 39.75 3.06
47 48 5.084055 GGTTCGATTTCCGTTTGTTCATAC 58.916 41.667 0.00 0.00 39.75 2.39
48 49 4.755629 TGGTTCGATTTCCGTTTGTTCATA 59.244 37.500 0.00 0.00 39.75 2.15
49 50 3.566322 TGGTTCGATTTCCGTTTGTTCAT 59.434 39.130 0.00 0.00 39.75 2.57
50 51 2.943690 TGGTTCGATTTCCGTTTGTTCA 59.056 40.909 0.00 0.00 39.75 3.18
51 52 3.002965 ACTGGTTCGATTTCCGTTTGTTC 59.997 43.478 0.00 0.00 39.75 3.18
52 53 2.946990 ACTGGTTCGATTTCCGTTTGTT 59.053 40.909 0.00 0.00 39.75 2.83
53 54 2.567985 ACTGGTTCGATTTCCGTTTGT 58.432 42.857 0.00 0.00 39.75 2.83
54 55 3.619233 AACTGGTTCGATTTCCGTTTG 57.381 42.857 0.00 0.00 39.75 2.93
55 56 3.749609 CCTAACTGGTTCGATTTCCGTTT 59.250 43.478 12.66 5.72 39.75 3.60
56 57 3.007182 TCCTAACTGGTTCGATTTCCGTT 59.993 43.478 0.00 2.35 37.00 4.44
57 58 2.564062 TCCTAACTGGTTCGATTTCCGT 59.436 45.455 0.00 0.00 37.00 4.69
58 59 3.241067 TCCTAACTGGTTCGATTTCCG 57.759 47.619 0.00 0.00 37.01 4.30
59 60 4.201920 GCATTCCTAACTGGTTCGATTTCC 60.202 45.833 0.00 0.00 37.07 3.13
60 61 4.201920 GGCATTCCTAACTGGTTCGATTTC 60.202 45.833 0.00 0.00 37.07 2.17
61 62 3.694566 GGCATTCCTAACTGGTTCGATTT 59.305 43.478 0.00 0.00 37.07 2.17
62 63 3.279434 GGCATTCCTAACTGGTTCGATT 58.721 45.455 0.00 0.00 37.07 3.34
63 64 2.238646 TGGCATTCCTAACTGGTTCGAT 59.761 45.455 0.00 0.00 37.07 3.59
64 65 1.626321 TGGCATTCCTAACTGGTTCGA 59.374 47.619 0.00 0.00 37.07 3.71
65 66 2.107950 TGGCATTCCTAACTGGTTCG 57.892 50.000 0.00 0.00 37.07 3.95
66 67 4.381932 CCAAATGGCATTCCTAACTGGTTC 60.382 45.833 14.04 0.00 37.07 3.62
67 68 3.515104 CCAAATGGCATTCCTAACTGGTT 59.485 43.478 14.04 0.00 37.07 3.67
68 69 3.099141 CCAAATGGCATTCCTAACTGGT 58.901 45.455 14.04 0.00 37.07 4.00
69 70 3.364549 TCCAAATGGCATTCCTAACTGG 58.635 45.455 14.04 15.62 34.44 4.00
70 71 4.142093 CCTTCCAAATGGCATTCCTAACTG 60.142 45.833 14.04 6.76 34.44 3.16
71 72 4.026052 CCTTCCAAATGGCATTCCTAACT 58.974 43.478 14.04 0.00 34.44 2.24
72 73 4.391405 CCTTCCAAATGGCATTCCTAAC 57.609 45.455 14.04 0.00 34.44 2.34
87 88 3.044894 ACCTTCAAAAATTGGCCTTCCA 58.955 40.909 3.32 0.00 41.55 3.53
88 89 3.769739 ACCTTCAAAAATTGGCCTTCC 57.230 42.857 3.32 0.00 0.00 3.46
89 90 5.368145 AGAAACCTTCAAAAATTGGCCTTC 58.632 37.500 3.32 0.00 0.00 3.46
90 91 5.372343 AGAAACCTTCAAAAATTGGCCTT 57.628 34.783 3.32 0.00 0.00 4.35
91 92 5.012046 CCTAGAAACCTTCAAAAATTGGCCT 59.988 40.000 3.32 0.00 0.00 5.19
92 93 5.237815 CCTAGAAACCTTCAAAAATTGGCC 58.762 41.667 0.00 0.00 0.00 5.36
93 94 4.690748 GCCTAGAAACCTTCAAAAATTGGC 59.309 41.667 0.00 0.00 0.00 4.52
94 95 5.012046 AGGCCTAGAAACCTTCAAAAATTGG 59.988 40.000 1.29 0.00 29.74 3.16
95 96 6.101650 AGGCCTAGAAACCTTCAAAAATTG 57.898 37.500 1.29 0.00 29.74 2.32
96 97 6.071334 GCTAGGCCTAGAAACCTTCAAAAATT 60.071 38.462 38.74 0.00 37.50 1.82
97 98 5.419155 GCTAGGCCTAGAAACCTTCAAAAAT 59.581 40.000 38.74 0.00 37.50 1.82
98 99 4.765339 GCTAGGCCTAGAAACCTTCAAAAA 59.235 41.667 38.74 1.97 37.50 1.94
99 100 4.042934 AGCTAGGCCTAGAAACCTTCAAAA 59.957 41.667 38.74 2.69 37.50 2.44
100 101 3.587506 AGCTAGGCCTAGAAACCTTCAAA 59.412 43.478 38.74 3.18 37.50 2.69
101 102 3.182152 AGCTAGGCCTAGAAACCTTCAA 58.818 45.455 38.74 3.41 37.50 2.69
102 103 2.834113 AGCTAGGCCTAGAAACCTTCA 58.166 47.619 38.74 3.99 37.50 3.02
103 104 4.038282 GTCTAGCTAGGCCTAGAAACCTTC 59.962 50.000 38.74 20.97 43.84 3.46
104 105 3.962063 GTCTAGCTAGGCCTAGAAACCTT 59.038 47.826 38.74 19.31 43.84 3.50
105 106 3.568443 GTCTAGCTAGGCCTAGAAACCT 58.432 50.000 38.74 27.55 43.84 3.50
106 107 2.629137 GGTCTAGCTAGGCCTAGAAACC 59.371 54.545 38.74 30.67 44.64 3.27
114 115 8.505440 TGATTATATCACTGGTCTAGCTAGGCC 61.505 44.444 33.43 33.43 40.43 5.19
115 116 6.378564 TGATTATATCACTGGTCTAGCTAGGC 59.621 42.308 20.58 19.02 33.59 3.93
116 117 7.416213 GCTGATTATATCACTGGTCTAGCTAGG 60.416 44.444 20.58 7.03 35.06 3.02
117 118 7.339212 AGCTGATTATATCACTGGTCTAGCTAG 59.661 40.741 15.01 15.01 35.06 3.42
118 119 7.121907 CAGCTGATTATATCACTGGTCTAGCTA 59.878 40.741 8.42 0.00 36.09 3.32
119 120 6.015918 AGCTGATTATATCACTGGTCTAGCT 58.984 40.000 0.00 0.00 35.06 3.32
120 121 6.098679 CAGCTGATTATATCACTGGTCTAGC 58.901 44.000 8.42 0.00 36.09 3.42
121 122 6.098679 GCAGCTGATTATATCACTGGTCTAG 58.901 44.000 20.43 0.00 38.11 2.43
122 123 5.539955 TGCAGCTGATTATATCACTGGTCTA 59.460 40.000 20.43 0.00 38.11 2.59
123 124 4.346127 TGCAGCTGATTATATCACTGGTCT 59.654 41.667 20.43 0.00 38.11 3.85
124 125 4.635223 TGCAGCTGATTATATCACTGGTC 58.365 43.478 20.43 0.00 38.11 4.02
125 126 4.102210 ACTGCAGCTGATTATATCACTGGT 59.898 41.667 20.43 0.00 38.11 4.00
126 127 4.639334 ACTGCAGCTGATTATATCACTGG 58.361 43.478 20.43 0.00 38.11 4.00
127 128 5.295152 TGACTGCAGCTGATTATATCACTG 58.705 41.667 20.43 2.75 39.36 3.66
128 129 5.541953 TGACTGCAGCTGATTATATCACT 57.458 39.130 20.43 0.00 35.06 3.41
129 130 6.034363 CGTATGACTGCAGCTGATTATATCAC 59.966 42.308 20.43 4.64 35.06 3.06
130 131 6.071952 TCGTATGACTGCAGCTGATTATATCA 60.072 38.462 20.43 11.53 37.76 2.15
131 132 6.325596 TCGTATGACTGCAGCTGATTATATC 58.674 40.000 20.43 5.92 0.00 1.63
132 133 6.151817 TCTCGTATGACTGCAGCTGATTATAT 59.848 38.462 20.43 8.10 0.00 0.86
133 134 5.473504 TCTCGTATGACTGCAGCTGATTATA 59.526 40.000 20.43 5.72 0.00 0.98
134 135 4.279420 TCTCGTATGACTGCAGCTGATTAT 59.721 41.667 20.43 6.73 0.00 1.28
135 136 3.632145 TCTCGTATGACTGCAGCTGATTA 59.368 43.478 20.43 1.31 0.00 1.75
136 137 2.428530 TCTCGTATGACTGCAGCTGATT 59.571 45.455 20.43 0.00 0.00 2.57
137 138 2.027385 TCTCGTATGACTGCAGCTGAT 58.973 47.619 20.43 3.71 0.00 2.90
138 139 1.133216 GTCTCGTATGACTGCAGCTGA 59.867 52.381 20.43 1.36 34.39 4.26
139 140 1.554392 GTCTCGTATGACTGCAGCTG 58.446 55.000 15.27 10.11 34.39 4.24
140 141 0.099613 CGTCTCGTATGACTGCAGCT 59.900 55.000 15.27 0.23 35.00 4.24
141 142 1.475441 GCGTCTCGTATGACTGCAGC 61.475 60.000 15.27 7.45 36.89 5.25
142 143 0.099613 AGCGTCTCGTATGACTGCAG 59.900 55.000 13.48 13.48 38.20 4.41
143 144 0.179163 CAGCGTCTCGTATGACTGCA 60.179 55.000 16.54 0.00 38.20 4.41
144 145 0.179161 ACAGCGTCTCGTATGACTGC 60.179 55.000 1.27 0.00 37.04 4.40
145 146 1.398739 AGACAGCGTCTCGTATGACTG 59.601 52.381 5.54 0.05 38.71 3.51
146 147 1.740297 AGACAGCGTCTCGTATGACT 58.260 50.000 5.54 0.00 38.71 3.41
155 156 1.675483 CAGATAGCAGAGACAGCGTCT 59.325 52.381 10.33 10.33 46.42 4.18
156 157 1.268999 CCAGATAGCAGAGACAGCGTC 60.269 57.143 1.15 1.15 37.01 5.19
157 158 0.743688 CCAGATAGCAGAGACAGCGT 59.256 55.000 0.00 0.00 37.01 5.07
158 159 1.028130 TCCAGATAGCAGAGACAGCG 58.972 55.000 0.00 0.00 37.01 5.18
159 160 2.031120 AGTCCAGATAGCAGAGACAGC 58.969 52.381 0.00 0.00 0.00 4.40
160 161 3.554934 AGAGTCCAGATAGCAGAGACAG 58.445 50.000 0.00 0.00 0.00 3.51
161 162 3.550820 GAGAGTCCAGATAGCAGAGACA 58.449 50.000 0.00 0.00 0.00 3.41
162 163 2.884639 GGAGAGTCCAGATAGCAGAGAC 59.115 54.545 0.00 0.00 36.28 3.36
163 164 2.511637 TGGAGAGTCCAGATAGCAGAGA 59.488 50.000 0.00 0.00 42.67 3.10
164 165 2.942804 TGGAGAGTCCAGATAGCAGAG 58.057 52.381 0.00 0.00 42.67 3.35
174 175 3.394274 TGGTCATTTTTCTGGAGAGTCCA 59.606 43.478 0.00 0.00 45.98 4.02
175 176 3.753797 GTGGTCATTTTTCTGGAGAGTCC 59.246 47.826 0.00 0.00 36.96 3.85
176 177 4.389374 TGTGGTCATTTTTCTGGAGAGTC 58.611 43.478 0.00 0.00 0.00 3.36
177 178 4.437682 TGTGGTCATTTTTCTGGAGAGT 57.562 40.909 0.00 0.00 0.00 3.24
178 179 4.823989 AGTTGTGGTCATTTTTCTGGAGAG 59.176 41.667 0.00 0.00 0.00 3.20
179 180 4.792068 AGTTGTGGTCATTTTTCTGGAGA 58.208 39.130 0.00 0.00 0.00 3.71
180 181 5.520376 AAGTTGTGGTCATTTTTCTGGAG 57.480 39.130 0.00 0.00 0.00 3.86
181 182 5.930837 AAAGTTGTGGTCATTTTTCTGGA 57.069 34.783 0.00 0.00 0.00 3.86
182 183 7.038659 TGTAAAAGTTGTGGTCATTTTTCTGG 58.961 34.615 0.00 0.00 0.00 3.86
183 184 8.647143 ATGTAAAAGTTGTGGTCATTTTTCTG 57.353 30.769 0.00 0.00 0.00 3.02
184 185 7.926018 GGATGTAAAAGTTGTGGTCATTTTTCT 59.074 33.333 0.00 0.00 0.00 2.52
185 186 7.708752 TGGATGTAAAAGTTGTGGTCATTTTTC 59.291 33.333 0.00 0.00 0.00 2.29
186 187 7.560368 TGGATGTAAAAGTTGTGGTCATTTTT 58.440 30.769 0.00 0.00 0.00 1.94
187 188 7.118496 TGGATGTAAAAGTTGTGGTCATTTT 57.882 32.000 0.00 0.00 0.00 1.82
188 189 6.723298 TGGATGTAAAAGTTGTGGTCATTT 57.277 33.333 0.00 0.00 0.00 2.32
189 190 6.723298 TTGGATGTAAAAGTTGTGGTCATT 57.277 33.333 0.00 0.00 0.00 2.57
190 191 6.323739 AGTTTGGATGTAAAAGTTGTGGTCAT 59.676 34.615 0.00 0.00 0.00 3.06
191 192 5.654650 AGTTTGGATGTAAAAGTTGTGGTCA 59.345 36.000 0.00 0.00 0.00 4.02
192 193 6.144078 AGTTTGGATGTAAAAGTTGTGGTC 57.856 37.500 0.00 0.00 0.00 4.02
193 194 5.068591 GGAGTTTGGATGTAAAAGTTGTGGT 59.931 40.000 0.00 0.00 0.00 4.16
194 195 5.528870 GGAGTTTGGATGTAAAAGTTGTGG 58.471 41.667 0.00 0.00 0.00 4.17
195 196 5.212194 CGGAGTTTGGATGTAAAAGTTGTG 58.788 41.667 0.00 0.00 0.00 3.33
196 197 4.885325 ACGGAGTTTGGATGTAAAAGTTGT 59.115 37.500 0.00 0.00 37.78 3.32
197 198 5.432885 ACGGAGTTTGGATGTAAAAGTTG 57.567 39.130 0.00 0.00 37.78 3.16
209 210 8.946818 ACAAACAACATTGAAAACGGAGTTTGG 61.947 37.037 15.69 2.30 45.69 3.28
210 211 6.128688 ACAAACAACATTGAAAACGGAGTTTG 60.129 34.615 0.00 0.00 45.69 2.93
212 213 5.474825 ACAAACAACATTGAAAACGGAGTT 58.525 33.333 0.00 0.00 42.64 3.01
213 214 5.066968 ACAAACAACATTGAAAACGGAGT 57.933 34.783 0.00 0.00 36.71 3.85
214 215 5.220378 CCAACAAACAACATTGAAAACGGAG 60.220 40.000 0.00 0.00 34.38 4.63
215 216 4.627467 CCAACAAACAACATTGAAAACGGA 59.373 37.500 0.00 0.00 34.38 4.69
216 217 4.627467 TCCAACAAACAACATTGAAAACGG 59.373 37.500 0.00 0.00 34.38 4.44
217 218 5.769967 TCCAACAAACAACATTGAAAACG 57.230 34.783 0.00 0.00 34.38 3.60
218 219 7.746929 TGATTCCAACAAACAACATTGAAAAC 58.253 30.769 0.00 0.00 34.38 2.43
219 220 7.912056 TGATTCCAACAAACAACATTGAAAA 57.088 28.000 0.00 0.00 34.38 2.29
220 221 9.775854 ATATGATTCCAACAAACAACATTGAAA 57.224 25.926 0.00 0.00 34.38 2.69
221 222 9.205719 CATATGATTCCAACAAACAACATTGAA 57.794 29.630 0.00 0.00 34.38 2.69
222 223 8.583296 TCATATGATTCCAACAAACAACATTGA 58.417 29.630 0.00 0.00 34.38 2.57
223 224 8.760103 TCATATGATTCCAACAAACAACATTG 57.240 30.769 0.00 0.00 36.37 2.82
224 225 9.947433 ATTCATATGATTCCAACAAACAACATT 57.053 25.926 6.17 0.00 0.00 2.71
225 226 9.373603 CATTCATATGATTCCAACAAACAACAT 57.626 29.630 6.17 0.00 33.37 2.71
226 227 8.583296 TCATTCATATGATTCCAACAAACAACA 58.417 29.630 6.17 0.00 35.87 3.33
227 228 8.863049 GTCATTCATATGATTCCAACAAACAAC 58.137 33.333 6.17 0.00 42.49 3.32
228 229 8.583296 TGTCATTCATATGATTCCAACAAACAA 58.417 29.630 6.17 0.00 42.49 2.83
229 230 8.028354 GTGTCATTCATATGATTCCAACAAACA 58.972 33.333 6.17 0.00 42.49 2.83
230 231 8.246180 AGTGTCATTCATATGATTCCAACAAAC 58.754 33.333 6.17 0.00 42.49 2.93
231 232 8.245491 CAGTGTCATTCATATGATTCCAACAAA 58.755 33.333 6.17 0.00 42.49 2.83
232 233 7.611079 TCAGTGTCATTCATATGATTCCAACAA 59.389 33.333 6.17 0.00 42.49 2.83
233 234 7.111466 TCAGTGTCATTCATATGATTCCAACA 58.889 34.615 6.17 4.79 42.49 3.33
234 235 7.558161 TCAGTGTCATTCATATGATTCCAAC 57.442 36.000 6.17 3.56 42.49 3.77
235 236 9.276590 GTATCAGTGTCATTCATATGATTCCAA 57.723 33.333 6.17 0.00 42.49 3.53
236 237 8.431222 TGTATCAGTGTCATTCATATGATTCCA 58.569 33.333 6.17 0.00 42.49 3.53
237 238 8.715998 GTGTATCAGTGTCATTCATATGATTCC 58.284 37.037 6.17 0.00 42.49 3.01
238 239 9.486497 AGTGTATCAGTGTCATTCATATGATTC 57.514 33.333 6.17 0.00 42.49 2.52
239 240 9.842775 AAGTGTATCAGTGTCATTCATATGATT 57.157 29.630 6.17 0.00 42.49 2.57
240 241 9.269453 CAAGTGTATCAGTGTCATTCATATGAT 57.731 33.333 6.17 0.00 42.49 2.45
241 242 8.260114 ACAAGTGTATCAGTGTCATTCATATGA 58.740 33.333 0.00 0.00 38.45 2.15
242 243 8.429493 ACAAGTGTATCAGTGTCATTCATATG 57.571 34.615 0.00 0.00 0.00 1.78
243 244 9.755804 CTACAAGTGTATCAGTGTCATTCATAT 57.244 33.333 0.00 0.00 0.00 1.78
244 245 8.749354 ACTACAAGTGTATCAGTGTCATTCATA 58.251 33.333 0.00 0.00 0.00 2.15
245 246 7.615403 ACTACAAGTGTATCAGTGTCATTCAT 58.385 34.615 0.00 0.00 0.00 2.57
246 247 6.993079 ACTACAAGTGTATCAGTGTCATTCA 58.007 36.000 0.00 0.00 0.00 2.57
247 248 9.239002 GATACTACAAGTGTATCAGTGTCATTC 57.761 37.037 8.47 0.00 43.25 2.67
248 249 8.749354 TGATACTACAAGTGTATCAGTGTCATT 58.251 33.333 11.16 0.00 46.28 2.57
249 250 8.293699 TGATACTACAAGTGTATCAGTGTCAT 57.706 34.615 11.16 0.00 46.28 3.06
250 251 7.696992 TGATACTACAAGTGTATCAGTGTCA 57.303 36.000 11.16 7.71 46.28 3.58
260 261 9.950496 AAAATCAAGATCTGATACTACAAGTGT 57.050 29.630 0.00 0.00 44.43 3.55
264 265 9.102757 GCTCAAAATCAAGATCTGATACTACAA 57.897 33.333 0.00 0.00 44.43 2.41
265 266 8.260114 TGCTCAAAATCAAGATCTGATACTACA 58.740 33.333 0.00 0.00 44.43 2.74
266 267 8.654230 TGCTCAAAATCAAGATCTGATACTAC 57.346 34.615 0.00 0.00 44.43 2.73
267 268 9.842775 AATGCTCAAAATCAAGATCTGATACTA 57.157 29.630 0.00 0.00 44.43 1.82
268 269 8.749026 AATGCTCAAAATCAAGATCTGATACT 57.251 30.769 0.00 0.00 44.43 2.12
269 270 9.798994 AAAATGCTCAAAATCAAGATCTGATAC 57.201 29.630 0.00 0.00 44.43 2.24
270 271 9.797556 CAAAATGCTCAAAATCAAGATCTGATA 57.202 29.630 0.00 0.00 44.43 2.15
272 273 7.888424 TCAAAATGCTCAAAATCAAGATCTGA 58.112 30.769 0.00 0.00 38.81 3.27
273 274 8.528917 TTCAAAATGCTCAAAATCAAGATCTG 57.471 30.769 0.00 0.00 0.00 2.90
274 275 9.550406 TTTTCAAAATGCTCAAAATCAAGATCT 57.450 25.926 0.00 0.00 0.00 2.75
315 316 8.889717 CCACCTTTATAAATAAAGTCACACGAT 58.110 33.333 17.13 0.00 44.77 3.73
316 317 8.095792 TCCACCTTTATAAATAAAGTCACACGA 58.904 33.333 17.13 5.41 44.77 4.35
317 318 8.173130 GTCCACCTTTATAAATAAAGTCACACG 58.827 37.037 17.13 6.99 44.77 4.49
318 319 8.173130 CGTCCACCTTTATAAATAAAGTCACAC 58.827 37.037 17.13 9.86 44.77 3.82
319 320 8.095792 TCGTCCACCTTTATAAATAAAGTCACA 58.904 33.333 17.13 1.56 44.77 3.58
320 321 8.483307 TCGTCCACCTTTATAAATAAAGTCAC 57.517 34.615 17.13 9.37 44.77 3.67
321 322 9.504708 TTTCGTCCACCTTTATAAATAAAGTCA 57.495 29.630 17.13 1.03 44.77 3.41
328 329 7.966204 CGTTTGATTTCGTCCACCTTTATAAAT 59.034 33.333 0.00 0.00 0.00 1.40
329 330 7.299586 CGTTTGATTTCGTCCACCTTTATAAA 58.700 34.615 0.00 0.00 0.00 1.40
330 331 6.621164 GCGTTTGATTTCGTCCACCTTTATAA 60.621 38.462 0.00 0.00 0.00 0.98
331 332 5.163834 GCGTTTGATTTCGTCCACCTTTATA 60.164 40.000 0.00 0.00 0.00 0.98
332 333 4.379082 GCGTTTGATTTCGTCCACCTTTAT 60.379 41.667 0.00 0.00 0.00 1.40
333 334 3.058777 GCGTTTGATTTCGTCCACCTTTA 60.059 43.478 0.00 0.00 0.00 1.85
334 335 2.287368 GCGTTTGATTTCGTCCACCTTT 60.287 45.455 0.00 0.00 0.00 3.11
335 336 1.265905 GCGTTTGATTTCGTCCACCTT 59.734 47.619 0.00 0.00 0.00 3.50
336 337 0.872388 GCGTTTGATTTCGTCCACCT 59.128 50.000 0.00 0.00 0.00 4.00
337 338 0.872388 AGCGTTTGATTTCGTCCACC 59.128 50.000 0.00 0.00 0.00 4.61
338 339 2.032377 TGAAGCGTTTGATTTCGTCCAC 60.032 45.455 0.00 0.00 0.00 4.02
339 340 2.214347 TGAAGCGTTTGATTTCGTCCA 58.786 42.857 0.00 0.00 0.00 4.02
340 341 2.961522 TGAAGCGTTTGATTTCGTCC 57.038 45.000 0.00 0.00 0.00 4.79
341 342 4.027991 CGATTTGAAGCGTTTGATTTCGTC 59.972 41.667 0.00 0.00 32.40 4.20
342 343 3.906008 CGATTTGAAGCGTTTGATTTCGT 59.094 39.130 0.00 0.00 32.40 3.85
343 344 4.148166 TCGATTTGAAGCGTTTGATTTCG 58.852 39.130 1.16 0.00 39.14 3.46
372 373 1.208535 CACAGGAACGGGCATAGGTTA 59.791 52.381 0.00 0.00 0.00 2.85
373 374 0.035439 CACAGGAACGGGCATAGGTT 60.035 55.000 0.00 0.00 0.00 3.50
414 415 1.672881 GCGAATATCTGCCTGCTTGTT 59.327 47.619 0.00 0.00 0.00 2.83
417 418 1.945394 CAAGCGAATATCTGCCTGCTT 59.055 47.619 0.00 0.00 42.89 3.91
421 422 1.303309 GTGCAAGCGAATATCTGCCT 58.697 50.000 0.00 0.00 0.00 4.75
425 426 3.801698 ACATCTGTGCAAGCGAATATCT 58.198 40.909 0.00 0.00 0.00 1.98
428 429 4.123497 ACTACATCTGTGCAAGCGAATA 57.877 40.909 0.00 0.00 0.00 1.75
429 430 2.977914 ACTACATCTGTGCAAGCGAAT 58.022 42.857 0.00 0.00 0.00 3.34
430 431 2.455674 ACTACATCTGTGCAAGCGAA 57.544 45.000 0.00 0.00 0.00 4.70
432 433 1.800586 ACAACTACATCTGTGCAAGCG 59.199 47.619 0.00 0.00 0.00 4.68
433 434 3.904136 AACAACTACATCTGTGCAAGC 57.096 42.857 0.00 0.00 0.00 4.01
434 435 5.679734 AGAAACAACTACATCTGTGCAAG 57.320 39.130 0.00 0.00 0.00 4.01
435 436 5.822519 AGAAGAAACAACTACATCTGTGCAA 59.177 36.000 0.00 0.00 0.00 4.08
436 437 5.368145 AGAAGAAACAACTACATCTGTGCA 58.632 37.500 0.00 0.00 0.00 4.57
437 438 5.931441 AGAAGAAACAACTACATCTGTGC 57.069 39.130 0.00 0.00 0.00 4.57
438 439 6.089551 CGGTAGAAGAAACAACTACATCTGTG 59.910 42.308 0.00 0.00 38.42 3.66
439 440 6.157211 CGGTAGAAGAAACAACTACATCTGT 58.843 40.000 0.00 0.00 38.42 3.41
442 443 4.031426 CGCGGTAGAAGAAACAACTACATC 59.969 45.833 0.00 0.00 38.42 3.06
444 445 3.004629 TCGCGGTAGAAGAAACAACTACA 59.995 43.478 6.13 0.00 38.42 2.74
445 446 3.568538 TCGCGGTAGAAGAAACAACTAC 58.431 45.455 6.13 0.00 36.69 2.73
447 448 2.035576 ACTCGCGGTAGAAGAAACAACT 59.964 45.455 6.13 0.00 0.00 3.16
449 450 2.806608 ACTCGCGGTAGAAGAAACAA 57.193 45.000 6.13 0.00 0.00 2.83
465 466 1.146358 GAACGGCATGCGGACTACTC 61.146 60.000 29.51 13.94 0.00 2.59
466 467 1.153628 GAACGGCATGCGGACTACT 60.154 57.895 29.51 5.89 0.00 2.57
467 468 1.421410 CTGAACGGCATGCGGACTAC 61.421 60.000 29.51 16.91 0.00 2.73
468 469 1.153647 CTGAACGGCATGCGGACTA 60.154 57.895 29.51 14.13 0.00 2.59
469 470 2.434884 CTGAACGGCATGCGGACT 60.435 61.111 29.51 16.58 0.00 3.85
470 471 3.499737 CCTGAACGGCATGCGGAC 61.500 66.667 29.51 21.38 0.00 4.79
471 472 3.545124 AACCTGAACGGCATGCGGA 62.545 57.895 29.51 8.47 35.61 5.54
472 473 2.141122 AAAACCTGAACGGCATGCGG 62.141 55.000 22.34 22.34 35.61 5.69
474 475 3.586430 AAAAACCTGAACGGCATGC 57.414 47.368 9.90 9.90 35.61 4.06
500 501 9.635404 TTACATAAAGTTTTCTTGGGAGAGAAA 57.365 29.630 0.00 0.00 42.28 2.52
501 502 9.635404 TTTACATAAAGTTTTCTTGGGAGAGAA 57.365 29.630 0.00 0.00 40.37 2.87
502 503 9.807921 ATTTACATAAAGTTTTCTTGGGAGAGA 57.192 29.630 0.00 0.00 40.37 3.10
504 505 9.807921 AGATTTACATAAAGTTTTCTTGGGAGA 57.192 29.630 0.00 0.00 40.37 3.71
539 1089 8.489990 TGCATTTCAATTAGAAGAAGAGAGAG 57.510 34.615 0.00 0.00 37.57 3.20
544 1094 5.674569 GCGCTGCATTTCAATTAGAAGAAGA 60.675 40.000 0.00 0.00 37.57 2.87
545 1095 4.498323 GCGCTGCATTTCAATTAGAAGAAG 59.502 41.667 0.00 0.00 37.57 2.85
549 1099 3.181497 GGAGCGCTGCATTTCAATTAGAA 60.181 43.478 25.15 0.00 0.00 2.10
550 1100 2.355756 GGAGCGCTGCATTTCAATTAGA 59.644 45.455 25.15 0.00 0.00 2.10
551 1101 2.542411 GGGAGCGCTGCATTTCAATTAG 60.542 50.000 30.47 0.00 0.00 1.73
552 1102 1.405105 GGGAGCGCTGCATTTCAATTA 59.595 47.619 30.47 0.00 0.00 1.40
553 1103 0.174162 GGGAGCGCTGCATTTCAATT 59.826 50.000 30.47 0.00 0.00 2.32
554 1104 1.811860 GGGAGCGCTGCATTTCAAT 59.188 52.632 30.47 0.00 0.00 2.57
555 1105 2.689785 CGGGAGCGCTGCATTTCAA 61.690 57.895 30.47 0.00 0.00 2.69
556 1106 3.126879 CGGGAGCGCTGCATTTCA 61.127 61.111 30.47 0.00 0.00 2.69
568 1118 2.125512 CCGAGAAACTGGCGGGAG 60.126 66.667 0.00 0.00 41.29 4.30
570 1120 0.887387 TTTTCCGAGAAACTGGCGGG 60.887 55.000 0.00 0.00 44.87 6.13
571 1121 1.165270 ATTTTCCGAGAAACTGGCGG 58.835 50.000 0.00 0.00 46.08 6.13
572 1122 3.682858 TCTTATTTTCCGAGAAACTGGCG 59.317 43.478 0.00 0.00 0.00 5.69
573 1123 4.454504 TGTCTTATTTTCCGAGAAACTGGC 59.545 41.667 0.00 0.00 0.00 4.85
574 1124 6.554334 TTGTCTTATTTTCCGAGAAACTGG 57.446 37.500 0.00 0.00 0.00 4.00
575 1125 6.080406 GCTTGTCTTATTTTCCGAGAAACTG 58.920 40.000 0.00 0.00 0.00 3.16
577 1127 5.997385 TGCTTGTCTTATTTTCCGAGAAAC 58.003 37.500 0.00 0.00 0.00 2.78
578 1128 5.995282 TCTGCTTGTCTTATTTTCCGAGAAA 59.005 36.000 0.00 0.00 0.00 2.52
581 1131 5.862924 TTCTGCTTGTCTTATTTTCCGAG 57.137 39.130 0.00 0.00 0.00 4.63
582 1132 6.435428 GTTTTCTGCTTGTCTTATTTTCCGA 58.565 36.000 0.00 0.00 0.00 4.55
584 1134 6.206498 ACGTTTTCTGCTTGTCTTATTTTCC 58.794 36.000 0.00 0.00 0.00 3.13
585 1135 7.534239 CCTACGTTTTCTGCTTGTCTTATTTTC 59.466 37.037 0.00 0.00 0.00 2.29
588 1138 5.106673 GCCTACGTTTTCTGCTTGTCTTATT 60.107 40.000 0.00 0.00 0.00 1.40
593 1236 1.871039 TGCCTACGTTTTCTGCTTGTC 59.129 47.619 0.00 0.00 0.00 3.18
650 1293 0.387878 CAGAGAGGTATCGCATCGCC 60.388 60.000 0.00 0.00 32.37 5.54
681 1325 1.590932 CCATGCTCTCATGCAGGTAC 58.409 55.000 0.00 0.00 46.69 3.34
700 1345 1.355971 CATGCAATGCAGTGAAAGGC 58.644 50.000 20.00 1.85 43.65 4.35
737 1382 3.355378 CAGGAGTGAGAGTGAGTGAGAT 58.645 50.000 0.00 0.00 0.00 2.75
747 1392 1.139308 CAGCGAGCAGGAGTGAGAG 59.861 63.158 0.00 0.00 0.00 3.20
748 1393 0.322546 TACAGCGAGCAGGAGTGAGA 60.323 55.000 0.00 0.00 0.00 3.27
777 1422 2.101582 GAGAGAGAGAGAGAGAGAGCGT 59.898 54.545 0.00 0.00 0.00 5.07
778 1423 2.748605 GAGAGAGAGAGAGAGAGAGCG 58.251 57.143 0.00 0.00 0.00 5.03
779 1424 2.748605 CGAGAGAGAGAGAGAGAGAGC 58.251 57.143 0.00 0.00 0.00 4.09
781 1426 1.412710 GGCGAGAGAGAGAGAGAGAGA 59.587 57.143 0.00 0.00 0.00 3.10
782 1427 1.541233 GGGCGAGAGAGAGAGAGAGAG 60.541 61.905 0.00 0.00 0.00 3.20
783 1428 0.468226 GGGCGAGAGAGAGAGAGAGA 59.532 60.000 0.00 0.00 0.00 3.10
784 1429 0.469917 AGGGCGAGAGAGAGAGAGAG 59.530 60.000 0.00 0.00 0.00 3.20
785 1430 0.916086 AAGGGCGAGAGAGAGAGAGA 59.084 55.000 0.00 0.00 0.00 3.10
786 1431 1.762708 AAAGGGCGAGAGAGAGAGAG 58.237 55.000 0.00 0.00 0.00 3.20
787 1432 3.586470 ATAAAGGGCGAGAGAGAGAGA 57.414 47.619 0.00 0.00 0.00 3.10
788 1433 5.975693 AATATAAAGGGCGAGAGAGAGAG 57.024 43.478 0.00 0.00 0.00 3.20
789 1434 5.833667 TCAAATATAAAGGGCGAGAGAGAGA 59.166 40.000 0.00 0.00 0.00 3.10
867 1512 3.054728 ACCGATGAAGACAGAGAGAGAGA 60.055 47.826 0.00 0.00 0.00 3.10
869 1514 3.054728 AGACCGATGAAGACAGAGAGAGA 60.055 47.826 0.00 0.00 0.00 3.10
870 1515 3.278574 AGACCGATGAAGACAGAGAGAG 58.721 50.000 0.00 0.00 0.00 3.20
871 1516 3.275143 GAGACCGATGAAGACAGAGAGA 58.725 50.000 0.00 0.00 0.00 3.10
1272 1917 3.522731 CCGTAGAGGAGCAGCGCT 61.523 66.667 2.64 2.64 45.00 5.92
1814 2468 1.652563 CGTCGATCCGCCATAGTCA 59.347 57.895 0.00 0.00 0.00 3.41
2018 2690 2.046314 TCGCTGCCAAGGCCTAAC 60.046 61.111 5.16 0.00 41.09 2.34
2155 2827 4.790765 AGCATTTTCAAAAGGGAGTAGC 57.209 40.909 0.00 0.00 0.00 3.58
2156 2828 8.576442 TCTTAAAGCATTTTCAAAAGGGAGTAG 58.424 33.333 0.00 0.00 40.09 2.57
2157 2829 8.472007 TCTTAAAGCATTTTCAAAAGGGAGTA 57.528 30.769 0.00 0.00 40.09 2.59
2473 3158 5.162075 CGTTCAGTTTTTGTGTTTGGGTAA 58.838 37.500 0.00 0.00 0.00 2.85
2483 3168 3.214328 AGATGCTCCGTTCAGTTTTTGT 58.786 40.909 0.00 0.00 0.00 2.83
2586 3530 8.579850 AAACTGAAGGAGTAAATATTGCATGA 57.420 30.769 0.00 0.00 33.09 3.07
2587 3531 9.643693 AAAAACTGAAGGAGTAAATATTGCATG 57.356 29.630 0.00 0.00 33.09 4.06
2616 3560 9.847224 AGGATAAAGTTGAAAAGAACTACTTGA 57.153 29.630 0.00 0.00 38.98 3.02
2726 3670 9.705471 TTTGACTTTATACAAATTAATACGCGG 57.295 29.630 12.47 0.00 32.26 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.