>input_sequence_69211
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--------------------------------------------ATGGAACACAAACCCAACCCAGCAGTGCTTGCCGCT
ACCACTACCGAGGCCGCAAGCAGCAGCAACGTCGGGAGCAGCGCGAGCAGCGGCGGCCGGAAGGGGAAGGCGGCGGGCAA
GGGCGGGCCGGAGAACGCCAAGTTCAGGTACCGTGGCGTGCGGCAGCGGAGCTGGGGCAAGTGGGTGGCGGAGATCCGGG
AGCCCCGCAAGCGCTCGCGCAAGTGGCTCGGCACCTTCGCCACTGCCGAGGACGCCGCGCGCGCCTACGACCGCGCAGCG
CTGCTCCTCTACGGCCCGCGTGCCCACCTCAACCTCACCGCGCCGCCGCCCCTGGCCCCCGGGGCGGACTCCCACCCCCG
GCCCTTGGGGTCCTCGGCTTCTTCCTCGAGCTCCTCCGCGCCCCCGCCGCTCCGGCCGCTCTTGCCGCGCCCGCCGCAGC
ACTCAGGTGGCGCCGGGGCGGTCTTCCA---CCACCACCACCACCACCAATACCGCTTCCTGCCGCTCCGCGTGACGCCA
CCGTCCACGTCGCCGCCTCTGTACTACGCGAGCACAGCCACCGCGTCCACGGTGACCACAACGG------TGGCGCCGCC
GCACGAGACGACTGCCTCGTTGCCAGTGGCTTCGTCATCTACGGTGGCCGCCCAGGATGGTGCGCCGGCGGAGGCGGCAG
AGGCTGAGGTGACCCCCGAATGGTACCTTGCCGCCGAGGAGGAGGACTACGAGGCGGCGCTGCTGTGGAATGAACCTGAT
CCCTTGTTCGACATCTTCTCCAAGTGA-----------------------------------------------------
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>chr1D_1_TraesCS1D01G225000
GTGAGCCCAATCATTTCCCAGAACATCCCTTGAAGGCCAAGAAAATCGTATGAACAAACGGAAATCGAACCAGTTAGGAA
TGCCATTTGGAAGGCCAATTTTTGAAGGTTTCTAGGCCTAGCTAGACCAGTGATATAATCAGCTGCAGTCATACGAGACG
CTGTCTCTGCTATCTGGACTCTCCAGAAAAATGACCACAACTTTTACATCCAAACTCCGTTTTCAATGTTGTTTGTTGGA
ATCATATGAATGACACTGATACACTTGTAGTATCAGATCTTGATTTTGAGCATTTTGAAAAATATATATTATTAAATCGT
GTGACTTTATTTATAAAGGTGGACGAAATCAAACGCTTCAAATCGAAGCCCATAACCTATGCCCGTTCCTGTGAGTGCCG
TGACTGATGGTTAAAACAAGCAGGCAGATATTCGCTTGCACAGATGTAGTTGTTTCTTCTACCGCGAGTAGTCCGCATGC
CGTTCAGGTTTTTTTTGGGTTTTCTCTCCCAAGAAAAC------------------------------------------
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---------------------------TTTATGTAAATCTTTGTAATACTCTCTCTTCTTCTAATTGAAATGCAGCGCTC
CCGCCAGTTTCTCGGAAAA-------------------------------------------------------------
--------------------------------TAAGACAAGCAGAAAACGTAGGCACATCGCTACAGAAGATAAACCACA
CCGAATAAACCCGGCGATGCGATA-CCTCTCTGTGGCGTCAACTG-TACCTGCATGAGAGCATGGCCTTTCACTGCATTG
CATGCATGTCCGTTCCCTTCTATCTCACTCACTCTCACTCCTGCTCGCTGTACTCCACTGTACGCTCTCTCTCTCTCTCT
CTCGCCCTTTATATTTGACCACCGCCCCTCTCCACCAAGCACATCCTCCTCGGCCACTCCATCCCCACCCCTCTCTCTCT
CTGTCTTCATCGGTCTCCCCAACGCACAGCGAGCTAGGTATCCCTCTCTCTTCCCCATCCCTCCCCGTCCCCCCAGCGCC
AGGTCCCTCCCTCTATCTTTATACCTACCCGCTGCCGCCACCCCATGGAACACAAACCCAACCCAGCAGTGCTTGCCGCT
ACCACTACCGAGGCCGCAAGCAGCAGCAACGTCGGGAGCAGCGCGAGCAGCGGCGGCCGGAAGGGGAAGGCGGCGGGCAA
GGGCGGGCCGGAGAACGCCAAGTTCAGGTACCGTGGCGTGCGGCAGCGGAGCTGGGGCAAGTGGGTGGCGGAGATCCGGG
AGCCCCGCAAGCGCTCGCGCAAGTGGCTCGGCACCTTCGCCACTGCCGAGGACGCCGCGCGCGCCTACGACCGCGCAGCG
CTGCTCCTCTACGGCCCGCGTGCCCACCTCAACCTCACCGCGCCGCCGCCCCTGGCCCCCGGGGCGGACTCCCACCCCCG
GCCCTTGGGGTCCTCGGCTTCTTCCTCGAGCTCCTCCGCGCCCCCGCCGCTCCGGCCGCTCTTGCCGCGCCCGCCGCAGC
ACTCAGGTGGCGCCGGGGCGGTCTTCCA---CCACCACCACCACCACCAATACCGCTTCCTGCCGCTCCGCGTGACGCCA
CCGTCCACGTCGCCGCCTCTGTACTACGCGAGCACAGCCACCGCGTCCACGGTGACCACAACGG------TGGCGCCGCC
GCACGAGACGACTGCCTCGTTGCCAGTGGCTTCGTCATCTACGGTGGCCGCCCAGGATGGTGCGCCGGCGGAGGCGGCAG
AGGCTGAGGTGACCCCCGAATGGTACCTTGCCGCCGAGGAGGAGGACTACGAGGCGGCGCTGCTGTGGAATGAACCTGAT
CCCTTGTTCGACATCTTCTCCAAGTGATCAACAATCCACATAGATCAGAGCTCCTGACATGCATGAGT----GACTATGG
CGGATCGACGCAT--------------GCGGCAAGCGGCATGCATGTGTGTTGCAACTTGAAAGCAAGGAAAGGTAGATA
TAGCCTTACTAGGGTTTCCGATTTGCTTTTTCCTTACTACTAATTGATCAAGCTATCTTAATTAGATATATTTTTCTTGT
ATTTCTTGCTGGAGTTTGGCTTTGGGGTAATGTCGTGGTATTGGGAATAGTTAGGCCTTGGCAGCGACTTCAGATTTGAT
TTCAGTTCAGTCGTTTGCATCTACAAGTGGATGCATGATAACTGAACTGACTTGTATATACAATATATGTATCACATTAT
TATTTCTTTATCTTTTTGTACATACTGCTACT---CCCTTTTGAAAATGCTTTAAGAAAAACAGCATA--TAACCTATGA
AAGATATACTTGCATGTATATATACTCCTTTTTCAGAAGTACTTCAAAAACTTCAGTCTAAATTTCTTTTT----TTTTT
CACTTCGGATCGATCTATTTTTGCTGTCTGAAAAGAGATA----GTTTATTATGTATGTTGATTTTAATTTACCTCTCCC
TAATCTTTTGAACCGCAGCTATACACTTCCTGGGCTGTAATTCTACAATGTGCAGTTTTGTGTGGTTGAGGTTTCAGTTT
TGCTAAGTTATACACATATATGTTGCGTGTGAGAATTTTACCCAAACACAAAAACTGAACGGAGCATCTTCATTATATAC
T-------------------------------------------------------------------------------
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--------------------TTACAATATAGCTATGACGATTTGCCGTTTAATATAATCATGCATCTTCATTATTTAAGC
AAGTAATATTCATGCAATATTTACTCCTTCAGTTTTTTTTCAAGTAGTTCTTTTCAACTTTATCCTTCACATTTACTCTG
AAAACTCAACTTCACATTTACTCTAAAAGTTCAAGCACAAGTGTGTTACTCCATCCGTTTCTTTTTACTCCGCGTATTAA
TTTGTATAAAGTCAAATATTATAAAGTTTTATCAAGT
>chr1B_345
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------------------------GAAACCAAAGGCTTCAAATCGAAGCCCA--ACCTATGCCCGTTCCTGTGAGTGCCG
TGACTGGTGGTTAAGACTAGCCGGCCGAGTATACACCAACCATACTTTGGAGTGAGAAGGAGATCCTAACTAACAAAATA
AGGCATCTGATACTATGCTGAAAAGTCCCGTTTGGTCACTTTTCAAAAGAAGGATGCGCCGCTATTTTATCATCATCTGG
CACTGCTTGACTTGCTTTCACAGCTTTTAGCTTGAACGTGGCACTAAAGCCTCCATGTCAACTAAAGAAAATAGTTCAAG
ACAGTAGAGCACAGAGGGAATTACCAACATGGGTTCAGCATTTCGTTTAGTGAATGCGGAGATAAAAGCAGCTGCTATTG
ATGTGTAATTGGACCGCTCGCATCGCTACAGTGGGAGTAACTTCAGCAGTAACATCAAGTCTAACTAAGCAAATTTGCTT
ATGTAGCAATGAGTTAATGAAGAGAGCTTTAGGCTAGTCGTAATGAAGAGTATCATATACTAGTATCATGCATATGATAC
TAGTGTGTATGATACTACTTCCGTAATGCATAGTATCATAAGTTAGTATCTTAGGTTGCCTTATTAATTGCCATGCATGA
CACAAAATAGTACACCATTCAATATGATACGGTATCATGATATGATACCACATCCTCTCTTCCCTTATTTAATTGTGTGC
CACATCATTCAAAAAGTCTAGTTGGCATGTATGATACCGCTTGTGATATTCTCAATTCACTATGAGTCTATAACCTAATA
AATGAAACTTTGCATAACATCATACTTATGTTACTATTCACTATGAAGGTAGTAATATAGTTTAGGAATATGTTTATGTT
ACTAATTATGTTACCATACGCTGTGGCAAGTCTAAAACAAGCAGAAAACGTAGGCACATCGCTACAGAAGATAAACCACG
CCGAATAAACCCCGCGATGCGATACCCTCTCTGTGGCGTCAACTCATACCTGCATGAGAGCATGACCTTTCACTGCATTG
CATGCATGTCCGTTCCCTTCTCTCTCACTCA--CTCACTCCTGCTCGCTGTACTCCACTGTGTACG--------CTCTCT
CTCGCCCTTTATATTTGACCACCGCCCCTCTCCACCAAGCACATCCTCCTCGGCCACTCCATCCCCACCCT-----CTCT
CTCTCTTCATCGGTCTCCCCAACGCACAGCGAGCTAGGTATCCCTCTCTCTTCCCCATCCCTCCCCGTCCCCCCAGCGCC
AGGTCCGTCC--CTATCTTTATACCTACCA-CTGCCGCCACCCCATGGAACACAAACCCAACCCAGCAGTGCTTACCGCT
ACCACTACCGAGGCCGCAAGCAGCAGCGACGTCGGGAGCAGCGTGAGCAGTGGCGGCCGGAAGGGGAAGGCGGCGGGCAA
GGGCGGGCCGGAGAACGCCAAGTTCAGGTACCGTGGCGTGCGGCAGCGGAGCTGGGGCAAGTGGGTGGCGGAGATCCGGG
AGCCCCGCAAGCGCTCGCGCAAGTGGCTCGGCACCTTCGCCACTGCCGAGGATGCCGCGCGCGCCTACGACCGCGCGGCG
CTGCTCCTCTACGGCCCACGTGCCCACCTCAACCTCACCGCGCCGCCGCCCCTGGCCCCCGGGGCGGACCCCCACCCCCG
GCCCTTGGGGTCCTCGGCTTCTTCCTCGAGCTCCTCCGCGCCCCCGCCGCTCCGGCCGCTCTTGCCGCGCCCGCCGCAGA
ACTCAGGTGGCGCCGGGGCGGTCTTCCAA------CACCACCACCACCAATACCGCTTCCTGCCGCTCCGTGTGACGCCA
CCGTCGACGTCGCCGCCTCTGTACTACGCGAGCACAGCCACCGCGTCCACGGTGACCACCACGG------TGGCGCCGCC
TCACGAGACGACTGCCCCGTTGCCAGTGGCTTCGTCATCTACGATGGCCGCCCAGGATGGTGCTCCGGCGGGGGCGGCAG
AGGCTGAGGTGACCCCCGAATGGTACCTTGCCGCCGAGGAGGAGGACTACGAGGCCGCGCTGCTGTGGAATGAACCTGAT
CCCTTGTTCGACATCTTCTCCAAGTGATCAACAATCCACATAGATCAGAGCTCCTGACATGCATCATGCATGGACTATGG
CGGATCGACGCAT--------------GCGGCAAGCGGCATGCATGTGTGTTGCAACTTGAAAGCAAGGAAAGGTAGATA
TAGCCTTACTAGGGTTTCCGATTTGATTTTTCCTTACTACTAATTGATCAAGCTATCTTAATTAGATATATTTTTCTTGT
ATTTCTTGTTGGAGTTTGGCTTTGGGGTAATGTCGTGGTATTGGGAATATTTAGGCCTTGGCAGGGACTTCAGATTTGAT
TTCAGTTCAGTCGTTTGCATCCACAAGTGGGTGCATGATAACTGAACTGACTTGTATATA---------TATCACATTAT
TATTTCTTTATCTTTTTGTACATACT---ACT---ACCTTTTGAAAATGCTTTTAGAAAGAGAGCATATATAACCTATGA
AAGATATACTTGCATGTATATATACTCCTTTTTCAGAAGTACTTCAAAAACTTCAGTCTATATTTCTTTTG----TTTTT
CACTTCGGATCGATCTAATTTTGCTGTCTGAAAAGAGGTA----ATTTATTATATATGTTGATTTAAATTTACCTCCCTA
ATC-CTTTTCAACCGCAGTTATACACTTCCTGGGATGTAATTCTACAATGTGCAGTTTTGCGTGGTTGAGGTTTAA----
-----------ACACATATATGTTGCGTGTGATAATTGTACCCAAACGCAAAAACTGAACTGGGCATCTTCATTATTTAC
T-------------------------------------------------------------------------------
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--------------------TTACAATATAGCTATGACGATTTGCTGTTTAATATACTCATGCAATATTT----------
-----------------------------------------AAGTAGTTTGTTTCAACTTTATCCTTCACATTTACTCTG
A-------------------------------------------------------------------------------
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>chr1A_380
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-----------------------------------------------------------TGCCCGTTCCTATGAGTGCCG
TGACTGATGGT---------------------------------------------------------------------
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--------------------------------TAAAACAAGCAGAAAACGTAGGCACATCGCTACAGAAGATAAACC---
-----------CCGCGATGCGATA-CC-CTCTCTGGCGTCAACTCATACCTGCATGAGAGCACGACCTTTCACTGCATTG
CATGCATGCCCGTTCCCTTCTCTCTCACTCA--CTCACTCCTGCTCGCTGTACTCCACTGTGTACG--------CTCTCT
CTCGCCCTTTATATTTGACCACCGCCCCTCTCCACCAAGCACATCCTCCTCGGCCACTCCATCCCCACCCCCC---CTCT
CTCTCTTCATCGGTCTCCCCAACGCACAGCGAGCTAGGCATCCCTCTCTCTTCCCCATCCCTCCCCGTCCCCCCAGCGCC
AGGTCCCTCCCTCTATCTTTATACCTACCA-CTGCCGCCACCCCATGGAACACAAACCCAACCCAGCAGTGCTTGCCACT
ACCACTATCGAGGCCGCAAGCAGCAGCGACGTCGGGAGCAGCGTGAGCAGCGGCGGCCGGAAGGGGAAGGCGGCGGGCAA
GGGCGGGCCGGAGAACGCCAAGTTCAGGTACCGTGGCGTGCGGCAGCGGAGCTGGGGCAAGTGGGTGGCGGAGATCCGGG
AGCCCCGCAAGCGCTCTCGCAAGTGGCTCGGCACCTTCGCCACTGCCGAGGACGCCGCGCGCGCCTACGACCGCGCGGCG
CTGCTCCTCTACGGCCCGCGTGCCCACCTCAACCTCACCGCGCCGCCGCCCCTGGCCCCCGGGGCGGACTCCCACCCCCG
GCCCTTGGGGTCCTCGGCTTCTTCCTCGAGCTCCTCCGCGCCTCCGCCGCTCCGGCCGCTCTTGCCGCGCCCGCCGCAGC
ACTCAGGTGGCGCCGGGGCGGTCTTCCACCACCACCACCACCACCACCAATACCGCTTCCTGCCGCTCCGCGTGACTCCA
CCGTCCACGTCGCCGCCTCTGCACTACGCGAGCACAGCCACCGCGTCCACGGTGACCACCACGGTGGCGCTGGCGCCGCC
GCACGAGACGACTGCCTCGTTACCAGTGGCTTCGTCATCTACGGTGGCCGCCCAGGATCGTGTGCCGGCGGAGGCGGCAG
AGGCTGAGGTGACCCCCGAATGGTACCTTGCCGCCGAGGAGGAGGACTACGAGGCGGCGCTGCTGTGGAATGAACCTGAT
CCCTTGTTCGACATCTTCTCCAAGTGATCAACAATCCACATAGATCAGAGCTCCTGACATGCATGAGC----GACTATGG
CGGATCAACGCATGCGGCAAGCGGCAAGCGGCAAGCGGCATGCATGTGTGTTGCAACTTGAAAGCAAGGAAAGGTAGATA
TAGCCTTACTAGGGTTTCCGATTTGCTTTTTCCTTACTACTAATTGATCAAGCTATCTTAATTAGATATATTTTTCTTGT
ATTTCTTGCTGGAGTTTGGCTTTGGGGTAATGTCGTGGTATTGGGAATATTTAGGCCTTGGCAGCGACTTCAGATTTGAT
TTCAGTTCAGTCGTTTGCATCTACAAGTGGATGCATGATAACTGAACTGACTTGTATATACTATATATGTATCACATTAT
TATTTCTTTATCTTTTTGTACATACT---ACTACTCCCTTTTGAAAATACTTTAAGAAAAAGAGCAT--ATAACCTATAA
AAGATATACTTGCATGTATATATACTCCTTTTTCAGAAGTACTTCAAAAACTTCAGTCTACATTTCTTTCTTCTTTTTTT
CACTTCGGATCGATCTATTTTTGCTGTCTGAAAAGAGATAGTTTATATATTATGTATGTTGATTTTAATTTACCTCTCCC
TAATCTTTTGAACCGCAGCTATACACTTCCTGGGCTGTAATTCTACAATGTGCAGTTTTGTGTGGTTGGGGTTTCAGTTT
TGCTAAGTTATACACATATATGTTGCGTGTGAGAATTCTACCCAAACGCAAAAACTGAACGGAGCATCTTCATTATTTAC
TCCCTCTGTTTTCATTTACTCCACATATTAGAGTTGACTAAAGTCAAACTTCCTAAAGTTTGACCAAGTTTATAGAAAAG
AATACAAATATTTACCATAATAAATTTGTATGATGTGGAAGTACAGTCAATAATTAATCTAATGATATTGATTTGTTATT
GCATATATTAATACTTTTGTCTATAAACTTTGTCAAAGTTTAGAAAGCTTGACTTTGACCAAAGTTTATACGTGGAGTAA
ATAAAAACGGAGGGAGTACTTTACAATATATCTATGACTATTTTCCATTTAATATAATCATG------CAATATTTAAGA
TAGTAATATAAGGAGAGGAACTGTTTTTGT-----------AAGTAGTTCTTTTCAACTTTATCCTTCACATTTACTCTG
AAAACTCAACTTCACATTTACTCTAAAAGTTCAAGCACAAGTGTGTTACTCCATCCGTTTCTTTTTACTTCGCGTATTAA
TTTTTCTAAAGTCAAATATTATAAAGTTTGATCAAGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS----S----S------------------SS--------------------------
--------------S--S---S---S--SSS-SSSSSSSS--S-SS-S-SS--SSSSSSS-SSS-SSSSSSSS-SS-SSS
S-SSSSSSSS-SS-S--SSSSSSSSSS--SSSSSSSSS------------------------------------------
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----------------------------S----SS-SSSS----S---S----SS---SSSSSSSSSSS--SSSSSSS-S
SSSSS-SS--SS-SS--S--------------------------------------------------------------
-----------------------------------S-------------------------------------------S
------------S-------------------------------S-------------------S---------------
---------------------S---------SS----------------------------SSS-SSSSSSSSS------
-----------------------------------------------------------------------S-SSS----
--S-----------------------------------------------------------------------------
-----------------------------SS-------------------------------------------------
---------------------------S---------------S------------------------------------
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-------------------------------------------------S------------------------------
-------------------------------------------------------------S------------------
--------------------------SSS--------------------------------S------------------
------------------------------------------------------------S-------------------
--------------------------------------------S-----------------------------------
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-------------------------------------S---------S----------------------------S---
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----------------------------------------------------------------SSS---S--------S
S--------SSSSSS-SS-SS-SS-SS-SSSSSSSSSSSSS---------------------------------------
---------------------------------------------------------------------S----------
---S-S-----------------------S-------
>forward_160
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------------------------------------------------------------AGCTGCAGTCATACGAGACG
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>reverse_2468
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-------------------------------------------------------------------TGACTATGGCGGA
TCGACG--------------------------------------------------------------------------
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