Multiple sequence alignment - TraesCS1D01G221200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G221200 chr1D 100.000 2145 0 0 976 3120 309070414 309072558 0.000000e+00 3962.0
1 TraesCS1D01G221200 chr1D 100.000 498 0 0 1 498 309069439 309069936 0.000000e+00 920.0
2 TraesCS1D01G221200 chr1D 95.676 185 8 0 2758 2942 60986676 60986860 6.540000e-77 298.0
3 TraesCS1D01G221200 chr1A 94.676 1465 30 19 978 2435 388831111 388832534 0.000000e+00 2230.0
4 TraesCS1D01G221200 chr1A 96.988 498 15 0 1 498 388830353 388830850 0.000000e+00 837.0
5 TraesCS1D01G221200 chr1A 87.500 440 48 5 2433 2867 13174943 13174506 4.650000e-138 501.0
6 TraesCS1D01G221200 chr1A 98.895 181 2 0 2940 3120 388832530 388832710 1.080000e-84 324.0
7 TraesCS1D01G221200 chr1A 100.000 98 0 0 2431 2528 98875852 98875949 6.870000e-42 182.0
8 TraesCS1D01G221200 chr1B 92.045 704 11 16 1747 2435 418803123 418803796 0.000000e+00 948.0
9 TraesCS1D01G221200 chr1B 98.750 480 6 0 994 1473 418802191 418802670 0.000000e+00 854.0
10 TraesCS1D01G221200 chr1B 97.131 488 14 0 1 488 418801428 418801915 0.000000e+00 824.0
11 TraesCS1D01G221200 chr1B 98.315 178 3 0 2940 3117 418803792 418803969 2.340000e-81 313.0
12 TraesCS1D01G221200 chr1B 88.298 188 4 4 1527 1714 418802953 418803122 3.150000e-50 209.0
13 TraesCS1D01G221200 chrUn 97.458 236 6 0 2527 2762 48037970 48038205 1.350000e-108 403.0
14 TraesCS1D01G221200 chrUn 97.034 236 7 0 2527 2762 374428038 374427803 6.270000e-107 398.0
15 TraesCS1D01G221200 chr4B 97.458 236 6 0 2527 2762 3438642 3438407 1.350000e-108 403.0
16 TraesCS1D01G221200 chr5D 97.034 236 7 0 2526 2761 129481344 129481579 6.270000e-107 398.0
17 TraesCS1D01G221200 chr7D 95.219 251 11 1 2512 2761 45145475 45145725 2.250000e-106 396.0
18 TraesCS1D01G221200 chr7D 96.237 186 7 0 2758 2943 170330917 170330732 3.910000e-79 305.0
19 TraesCS1D01G221200 chr7D 100.000 96 0 0 2433 2528 26528143 26528238 8.890000e-41 178.0
20 TraesCS1D01G221200 chr4A 97.021 235 7 0 2527 2761 99024490 99024256 2.250000e-106 396.0
21 TraesCS1D01G221200 chr2A 97.034 236 6 1 2527 2762 47351221 47350987 2.250000e-106 396.0
22 TraesCS1D01G221200 chr2A 100.000 98 0 0 2431 2528 493563023 493563120 6.870000e-42 182.0
23 TraesCS1D01G221200 chr2A 98.980 98 1 0 2431 2528 262727836 262727739 3.200000e-40 176.0
24 TraesCS1D01G221200 chr2A 98.980 98 1 0 2431 2528 470799952 470800049 3.200000e-40 176.0
25 TraesCS1D01G221200 chr6A 88.487 304 30 4 2466 2766 373999513 373999814 2.290000e-96 363.0
26 TraesCS1D01G221200 chr4D 96.721 183 6 0 2758 2940 341214731 341214549 3.910000e-79 305.0
27 TraesCS1D01G221200 chr3A 96.216 185 7 0 2758 2942 592844845 592844661 1.410000e-78 303.0
28 TraesCS1D01G221200 chr3D 95.213 188 9 0 2758 2945 417605153 417604966 6.540000e-77 298.0
29 TraesCS1D01G221200 chr3D 100.000 100 0 0 2429 2528 295552253 295552352 5.310000e-43 185.0
30 TraesCS1D01G221200 chr3B 95.161 186 9 0 2758 2943 350078268 350078083 8.460000e-76 294.0
31 TraesCS1D01G221200 chr3B 89.583 48 5 0 3072 3119 793364535 793364582 9.340000e-06 62.1
32 TraesCS1D01G221200 chr5B 94.271 192 10 1 2749 2940 254348804 254348614 3.040000e-75 292.0
33 TraesCS1D01G221200 chr7B 93.467 199 8 2 2749 2943 136524790 136524593 1.090000e-74 291.0
34 TraesCS1D01G221200 chr6D 98.020 101 2 0 2428 2528 448381405 448381505 3.200000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G221200 chr1D 309069439 309072558 3119 False 2441.000000 3962 100.0000 1 3120 2 chr1D.!!$F2 3119
1 TraesCS1D01G221200 chr1A 388830353 388832710 2357 False 1130.333333 2230 96.8530 1 3120 3 chr1A.!!$F2 3119
2 TraesCS1D01G221200 chr1B 418801428 418803969 2541 False 629.600000 948 94.9078 1 3117 5 chr1B.!!$F1 3116

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
383 384 1.025812 CGAACTCGAGGCTACTGGAT 58.974 55.0 18.41 0.0 43.02 3.41 F
1424 1425 0.602905 AACGCCGTCTTCTTTCCCAG 60.603 55.0 0.00 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1837 2077 0.093026 GTCATCGTGCAAGTACGTGC 59.907 55.0 24.50 24.5 44.06 5.34 R
2923 3181 0.109342 CTAAGGCTGGCCATAGTGGG 59.891 60.0 5.51 0.0 38.19 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
212 213 3.623848 CCAACGGTGGTTCATCTCA 57.376 52.632 12.69 0.00 40.42 3.27
383 384 1.025812 CGAACTCGAGGCTACTGGAT 58.974 55.000 18.41 0.00 43.02 3.41
389 390 2.688446 CTCGAGGCTACTGGATGTGTAA 59.312 50.000 3.91 0.00 30.74 2.41
392 393 3.532542 GAGGCTACTGGATGTGTAAACC 58.467 50.000 0.00 0.00 0.00 3.27
393 394 2.238898 AGGCTACTGGATGTGTAAACCC 59.761 50.000 0.00 0.00 0.00 4.11
394 395 2.026636 GGCTACTGGATGTGTAAACCCA 60.027 50.000 0.00 0.00 0.00 4.51
395 396 3.560453 GGCTACTGGATGTGTAAACCCAA 60.560 47.826 0.00 0.00 0.00 4.12
1092 1093 2.270527 GGGCAGGAGAAGGAGCAC 59.729 66.667 0.00 0.00 0.00 4.40
1422 1423 0.883370 ACAACGCCGTCTTCTTTCCC 60.883 55.000 0.00 0.00 0.00 3.97
1423 1424 0.882927 CAACGCCGTCTTCTTTCCCA 60.883 55.000 0.00 0.00 0.00 4.37
1424 1425 0.602905 AACGCCGTCTTCTTTCCCAG 60.603 55.000 0.00 0.00 0.00 4.45
1626 1859 4.039092 CACCACCTCCAGCCCCAG 62.039 72.222 0.00 0.00 0.00 4.45
1838 2078 8.459635 TCTATCTCTGGTCAATATATACAACGC 58.540 37.037 0.00 0.00 0.00 4.84
1839 2079 6.399639 TCTCTGGTCAATATATACAACGCA 57.600 37.500 0.00 0.00 0.00 5.24
1840 2080 6.213677 TCTCTGGTCAATATATACAACGCAC 58.786 40.000 0.00 0.00 0.00 5.34
1841 2081 4.979815 TCTGGTCAATATATACAACGCACG 59.020 41.667 0.00 0.00 0.00 5.34
1842 2082 4.684877 TGGTCAATATATACAACGCACGT 58.315 39.130 0.00 0.00 0.00 4.49
1843 2083 5.829829 TGGTCAATATATACAACGCACGTA 58.170 37.500 0.00 0.00 0.00 3.57
1844 2084 5.686841 TGGTCAATATATACAACGCACGTAC 59.313 40.000 0.00 0.00 0.00 3.67
1845 2085 5.916883 GGTCAATATATACAACGCACGTACT 59.083 40.000 0.00 0.00 0.00 2.73
1846 2086 6.418819 GGTCAATATATACAACGCACGTACTT 59.581 38.462 0.00 0.00 0.00 2.24
1847 2087 7.271539 GTCAATATATACAACGCACGTACTTG 58.728 38.462 0.00 0.00 0.00 3.16
1848 2088 5.817616 ATATATACAACGCACGTACTTGC 57.182 39.130 14.03 14.03 39.28 4.01
2019 2259 4.221422 CGCGGACATGATCCCGGT 62.221 66.667 20.77 0.00 46.04 5.28
2131 2375 0.543277 AAGCCTGAATGCTCGATCCA 59.457 50.000 0.00 0.00 41.80 3.41
2132 2376 0.763652 AGCCTGAATGCTCGATCCAT 59.236 50.000 0.00 0.00 36.75 3.41
2133 2377 1.155042 GCCTGAATGCTCGATCCATC 58.845 55.000 0.00 0.00 0.00 3.51
2134 2378 1.805869 CCTGAATGCTCGATCCATCC 58.194 55.000 0.00 0.00 0.00 3.51
2149 2393 1.824852 CCATCCATCCATCCATGCATG 59.175 52.381 20.19 20.19 0.00 4.06
2249 2506 5.106237 CGGTTCATATGCTACCTACTACTCC 60.106 48.000 18.76 0.00 0.00 3.85
2430 2688 7.983166 TGTTACTCTGGGGTATTATACTTGT 57.017 36.000 2.21 0.00 0.00 3.16
2431 2689 8.383374 TGTTACTCTGGGGTATTATACTTGTT 57.617 34.615 2.21 0.00 0.00 2.83
2432 2690 9.491406 TGTTACTCTGGGGTATTATACTTGTTA 57.509 33.333 2.21 0.00 0.00 2.41
2433 2691 9.978044 GTTACTCTGGGGTATTATACTTGTTAG 57.022 37.037 2.21 0.00 0.00 2.34
2434 2692 7.613551 ACTCTGGGGTATTATACTTGTTAGG 57.386 40.000 2.21 0.00 0.00 2.69
2435 2693 6.042897 ACTCTGGGGTATTATACTTGTTAGGC 59.957 42.308 2.21 0.00 0.00 3.93
2436 2694 6.148186 TCTGGGGTATTATACTTGTTAGGCT 58.852 40.000 2.21 0.00 0.00 4.58
2437 2695 6.042781 TCTGGGGTATTATACTTGTTAGGCTG 59.957 42.308 0.00 0.00 0.00 4.85
2438 2696 5.072600 TGGGGTATTATACTTGTTAGGCTGG 59.927 44.000 0.00 0.00 0.00 4.85
2439 2697 5.072736 GGGGTATTATACTTGTTAGGCTGGT 59.927 44.000 0.00 0.00 0.00 4.00
2440 2698 6.228995 GGGTATTATACTTGTTAGGCTGGTC 58.771 44.000 0.00 0.00 0.00 4.02
2441 2699 6.183361 GGGTATTATACTTGTTAGGCTGGTCA 60.183 42.308 0.00 0.00 0.00 4.02
2442 2700 7.450903 GGTATTATACTTGTTAGGCTGGTCAT 58.549 38.462 0.00 0.00 0.00 3.06
2443 2701 8.591072 GGTATTATACTTGTTAGGCTGGTCATA 58.409 37.037 0.00 0.00 0.00 2.15
2444 2702 9.640963 GTATTATACTTGTTAGGCTGGTCATAG 57.359 37.037 0.00 0.00 0.00 2.23
2445 2703 7.670605 TTATACTTGTTAGGCTGGTCATAGT 57.329 36.000 0.00 3.64 0.00 2.12
2446 2704 4.207891 ACTTGTTAGGCTGGTCATAGTG 57.792 45.455 0.00 0.00 0.00 2.74
2447 2705 3.055094 ACTTGTTAGGCTGGTCATAGTGG 60.055 47.826 0.00 0.00 0.00 4.00
2448 2706 1.837439 TGTTAGGCTGGTCATAGTGGG 59.163 52.381 0.00 0.00 0.00 4.61
2449 2707 1.141053 GTTAGGCTGGTCATAGTGGGG 59.859 57.143 0.00 0.00 0.00 4.96
2450 2708 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
2451 2709 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
2452 2710 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
2453 2711 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
2454 2712 2.330216 GCTGGTCATAGTGGGGAGTAT 58.670 52.381 0.00 0.00 0.00 2.12
2455 2713 2.300437 GCTGGTCATAGTGGGGAGTATC 59.700 54.545 0.00 0.00 0.00 2.24
2456 2714 3.576861 CTGGTCATAGTGGGGAGTATCA 58.423 50.000 0.00 0.00 36.25 2.15
2457 2715 4.163427 CTGGTCATAGTGGGGAGTATCAT 58.837 47.826 0.00 0.00 36.25 2.45
2458 2716 5.333581 CTGGTCATAGTGGGGAGTATCATA 58.666 45.833 0.00 0.00 36.25 2.15
2459 2717 5.915628 TGGTCATAGTGGGGAGTATCATAT 58.084 41.667 0.00 0.00 36.25 1.78
2460 2718 7.051696 TGGTCATAGTGGGGAGTATCATATA 57.948 40.000 0.00 0.00 36.25 0.86
2461 2719 6.895756 TGGTCATAGTGGGGAGTATCATATAC 59.104 42.308 0.00 0.00 36.25 1.47
2462 2720 7.126733 GGTCATAGTGGGGAGTATCATATACT 58.873 42.308 0.00 0.00 36.25 2.12
2463 2721 8.280084 GGTCATAGTGGGGAGTATCATATACTA 58.720 40.741 0.00 0.00 36.25 1.82
2464 2722 9.344772 GTCATAGTGGGGAGTATCATATACTAG 57.655 40.741 0.00 0.00 36.25 2.57
2465 2723 9.070210 TCATAGTGGGGAGTATCATATACTAGT 57.930 37.037 0.00 0.00 36.25 2.57
2469 2727 9.070210 AGTGGGGAGTATCATATACTAGTATCA 57.930 37.037 18.68 5.25 36.25 2.15
2470 2728 9.869667 GTGGGGAGTATCATATACTAGTATCAT 57.130 37.037 18.68 11.67 36.25 2.45
2471 2729 9.868160 TGGGGAGTATCATATACTAGTATCATG 57.132 37.037 18.68 17.93 36.25 3.07
2472 2730 8.798402 GGGGAGTATCATATACTAGTATCATGC 58.202 40.741 18.68 12.34 36.25 4.06
2473 2731 9.355916 GGGAGTATCATATACTAGTATCATGCA 57.644 37.037 18.68 1.71 36.25 3.96
2509 2767 8.860088 AGTGTATGATACTACATTCATAGTGCA 58.140 33.333 4.03 0.00 35.94 4.57
2510 2768 9.645059 GTGTATGATACTACATTCATAGTGCAT 57.355 33.333 4.03 0.00 35.94 3.96
2531 2789 9.843334 GTGCATAGTAACATAGATTAGTACTCC 57.157 37.037 0.00 0.00 0.00 3.85
2532 2790 9.021807 TGCATAGTAACATAGATTAGTACTCCC 57.978 37.037 0.00 0.00 0.00 4.30
2533 2791 9.245481 GCATAGTAACATAGATTAGTACTCCCT 57.755 37.037 0.00 0.00 0.00 4.20
2535 2793 9.978336 ATAGTAACATAGATTAGTACTCCCTCC 57.022 37.037 0.00 0.00 0.00 4.30
2536 2794 6.941436 AGTAACATAGATTAGTACTCCCTCCG 59.059 42.308 0.00 0.00 0.00 4.63
2537 2795 5.321934 ACATAGATTAGTACTCCCTCCGT 57.678 43.478 0.00 0.00 0.00 4.69
2538 2796 5.315348 ACATAGATTAGTACTCCCTCCGTC 58.685 45.833 0.00 0.00 0.00 4.79
2539 2797 3.947612 AGATTAGTACTCCCTCCGTCA 57.052 47.619 0.00 0.00 0.00 4.35
2540 2798 3.553904 AGATTAGTACTCCCTCCGTCAC 58.446 50.000 0.00 0.00 0.00 3.67
2541 2799 2.885135 TTAGTACTCCCTCCGTCACA 57.115 50.000 0.00 0.00 0.00 3.58
2542 2800 2.414994 TAGTACTCCCTCCGTCACAG 57.585 55.000 0.00 0.00 0.00 3.66
2543 2801 0.404812 AGTACTCCCTCCGTCACAGT 59.595 55.000 0.00 0.00 0.00 3.55
2544 2802 1.203025 AGTACTCCCTCCGTCACAGTT 60.203 52.381 0.00 0.00 0.00 3.16
2545 2803 1.617357 GTACTCCCTCCGTCACAGTTT 59.383 52.381 0.00 0.00 0.00 2.66
2546 2804 2.005370 ACTCCCTCCGTCACAGTTTA 57.995 50.000 0.00 0.00 0.00 2.01
2547 2805 1.893801 ACTCCCTCCGTCACAGTTTAG 59.106 52.381 0.00 0.00 0.00 1.85
2548 2806 2.168496 CTCCCTCCGTCACAGTTTAGA 58.832 52.381 0.00 0.00 0.00 2.10
2549 2807 2.561419 CTCCCTCCGTCACAGTTTAGAA 59.439 50.000 0.00 0.00 0.00 2.10
2550 2808 2.561419 TCCCTCCGTCACAGTTTAGAAG 59.439 50.000 0.00 0.00 0.00 2.85
2551 2809 2.353803 CCCTCCGTCACAGTTTAGAAGG 60.354 54.545 0.00 0.00 35.14 3.46
2552 2810 2.338500 CTCCGTCACAGTTTAGAAGGC 58.662 52.381 0.00 0.00 34.05 4.35
2553 2811 1.689813 TCCGTCACAGTTTAGAAGGCA 59.310 47.619 0.00 0.00 34.05 4.75
2554 2812 1.798813 CCGTCACAGTTTAGAAGGCAC 59.201 52.381 0.00 0.00 0.00 5.01
2555 2813 2.479837 CGTCACAGTTTAGAAGGCACA 58.520 47.619 0.00 0.00 0.00 4.57
2556 2814 2.476619 CGTCACAGTTTAGAAGGCACAG 59.523 50.000 0.00 0.00 0.00 3.66
2557 2815 3.467803 GTCACAGTTTAGAAGGCACAGT 58.532 45.455 0.00 0.00 0.00 3.55
2558 2816 3.877508 GTCACAGTTTAGAAGGCACAGTT 59.122 43.478 0.00 0.00 0.00 3.16
2559 2817 5.054477 GTCACAGTTTAGAAGGCACAGTTA 58.946 41.667 0.00 0.00 0.00 2.24
2560 2818 5.526111 GTCACAGTTTAGAAGGCACAGTTAA 59.474 40.000 0.00 0.00 0.00 2.01
2561 2819 6.037830 GTCACAGTTTAGAAGGCACAGTTAAA 59.962 38.462 0.00 0.00 0.00 1.52
2562 2820 6.770785 TCACAGTTTAGAAGGCACAGTTAAAT 59.229 34.615 0.00 0.00 0.00 1.40
2563 2821 7.284489 TCACAGTTTAGAAGGCACAGTTAAATT 59.716 33.333 0.00 0.00 0.00 1.82
2564 2822 7.920682 CACAGTTTAGAAGGCACAGTTAAATTT 59.079 33.333 0.00 0.00 0.00 1.82
2565 2823 7.920682 ACAGTTTAGAAGGCACAGTTAAATTTG 59.079 33.333 0.00 0.00 0.00 2.32
2566 2824 6.923508 AGTTTAGAAGGCACAGTTAAATTTGC 59.076 34.615 5.51 5.51 0.00 3.68
2567 2825 3.900941 AGAAGGCACAGTTAAATTTGCG 58.099 40.909 7.84 0.00 35.74 4.85
2568 2826 3.317993 AGAAGGCACAGTTAAATTTGCGT 59.682 39.130 7.84 5.77 35.74 5.24
2569 2827 3.011949 AGGCACAGTTAAATTTGCGTG 57.988 42.857 8.27 4.14 35.74 5.34
2570 2828 1.455408 GGCACAGTTAAATTTGCGTGC 59.545 47.619 19.42 19.42 46.85 5.34
2571 2829 1.122323 GCACAGTTAAATTTGCGTGCG 59.878 47.619 15.51 1.61 40.16 5.34
2572 2830 2.380660 CACAGTTAAATTTGCGTGCGT 58.619 42.857 0.00 0.00 0.00 5.24
2573 2831 2.786578 CACAGTTAAATTTGCGTGCGTT 59.213 40.909 0.00 0.00 0.00 4.84
2574 2832 3.241784 CACAGTTAAATTTGCGTGCGTTT 59.758 39.130 0.00 0.00 0.00 3.60
2575 2833 3.860536 ACAGTTAAATTTGCGTGCGTTTT 59.139 34.783 0.00 0.00 0.00 2.43
2576 2834 4.027214 ACAGTTAAATTTGCGTGCGTTTTC 60.027 37.500 0.00 0.00 0.00 2.29
2577 2835 4.027295 CAGTTAAATTTGCGTGCGTTTTCA 60.027 37.500 0.00 0.00 0.00 2.69
2578 2836 2.988807 AAATTTGCGTGCGTTTTCAC 57.011 40.000 0.00 0.00 0.00 3.18
2579 2837 1.914634 AATTTGCGTGCGTTTTCACA 58.085 40.000 0.00 0.00 36.80 3.58
2580 2838 1.914634 ATTTGCGTGCGTTTTCACAA 58.085 40.000 0.00 0.00 36.80 3.33
2581 2839 1.914634 TTTGCGTGCGTTTTCACAAT 58.085 40.000 0.00 0.00 36.80 2.71
2582 2840 2.757686 TTGCGTGCGTTTTCACAATA 57.242 40.000 0.00 0.00 36.80 1.90
2583 2841 2.308347 TGCGTGCGTTTTCACAATAG 57.692 45.000 0.00 0.00 36.80 1.73
2584 2842 1.867865 TGCGTGCGTTTTCACAATAGA 59.132 42.857 0.00 0.00 36.80 1.98
2585 2843 2.230864 GCGTGCGTTTTCACAATAGAC 58.769 47.619 0.00 0.00 36.80 2.59
2586 2844 2.349060 GCGTGCGTTTTCACAATAGACA 60.349 45.455 0.00 0.00 36.80 3.41
2587 2845 3.846744 GCGTGCGTTTTCACAATAGACAA 60.847 43.478 0.00 0.00 36.80 3.18
2588 2846 3.900116 CGTGCGTTTTCACAATAGACAAG 59.100 43.478 0.00 0.00 36.80 3.16
2589 2847 4.219033 GTGCGTTTTCACAATAGACAAGG 58.781 43.478 0.00 0.00 36.97 3.61
2590 2848 3.880490 TGCGTTTTCACAATAGACAAGGT 59.120 39.130 0.00 0.00 0.00 3.50
2591 2849 4.336993 TGCGTTTTCACAATAGACAAGGTT 59.663 37.500 0.00 0.00 0.00 3.50
2592 2850 5.163602 TGCGTTTTCACAATAGACAAGGTTT 60.164 36.000 0.00 0.00 0.00 3.27
2593 2851 6.038382 TGCGTTTTCACAATAGACAAGGTTTA 59.962 34.615 0.00 0.00 0.00 2.01
2594 2852 6.577427 GCGTTTTCACAATAGACAAGGTTTAG 59.423 38.462 0.00 0.00 0.00 1.85
2595 2853 7.075741 CGTTTTCACAATAGACAAGGTTTAGG 58.924 38.462 0.00 0.00 0.00 2.69
2596 2854 7.368059 GTTTTCACAATAGACAAGGTTTAGGG 58.632 38.462 0.00 0.00 0.00 3.53
2597 2855 4.585879 TCACAATAGACAAGGTTTAGGGC 58.414 43.478 0.00 0.00 0.00 5.19
2598 2856 3.374058 CACAATAGACAAGGTTTAGGGCG 59.626 47.826 0.00 0.00 0.00 6.13
2599 2857 2.327200 ATAGACAAGGTTTAGGGCGC 57.673 50.000 0.00 0.00 0.00 6.53
2600 2858 0.978151 TAGACAAGGTTTAGGGCGCA 59.022 50.000 10.83 0.00 0.00 6.09
2601 2859 0.328258 AGACAAGGTTTAGGGCGCAT 59.672 50.000 10.83 0.00 0.00 4.73
2602 2860 1.173913 GACAAGGTTTAGGGCGCATT 58.826 50.000 10.83 0.00 0.00 3.56
2603 2861 0.887933 ACAAGGTTTAGGGCGCATTG 59.112 50.000 10.83 3.20 0.00 2.82
2604 2862 0.458370 CAAGGTTTAGGGCGCATTGC 60.458 55.000 10.83 0.00 45.38 3.56
2619 2877 6.901699 GCGCATTGCATTTATTTCTAGTAG 57.098 37.500 9.69 0.00 45.45 2.57
2620 2878 5.340667 GCGCATTGCATTTATTTCTAGTAGC 59.659 40.000 9.69 0.00 45.45 3.58
2621 2879 6.662616 CGCATTGCATTTATTTCTAGTAGCT 58.337 36.000 9.69 0.00 0.00 3.32
2622 2880 7.571244 GCGCATTGCATTTATTTCTAGTAGCTA 60.571 37.037 9.69 0.00 45.45 3.32
2623 2881 8.282592 CGCATTGCATTTATTTCTAGTAGCTAA 58.717 33.333 9.69 0.00 0.00 3.09
2635 2893 9.790344 ATTTCTAGTAGCTAATTAGTACTCCGA 57.210 33.333 21.10 17.46 0.00 4.55
2636 2894 9.790344 TTTCTAGTAGCTAATTAGTACTCCGAT 57.210 33.333 21.10 8.68 0.00 4.18
2658 2916 9.797473 CCGATATACTATTTTTATATGCATGCG 57.203 33.333 14.09 0.00 0.00 4.73
2664 2922 8.378172 ACTATTTTTATATGCATGCGTAGTGT 57.622 30.769 23.20 10.69 0.00 3.55
2665 2923 8.282592 ACTATTTTTATATGCATGCGTAGTGTG 58.717 33.333 23.20 10.87 0.00 3.82
2666 2924 6.670077 TTTTTATATGCATGCGTAGTGTGA 57.330 33.333 23.20 8.08 0.00 3.58
2667 2925 6.670077 TTTTATATGCATGCGTAGTGTGAA 57.330 33.333 23.20 8.59 0.00 3.18
2668 2926 6.859420 TTTATATGCATGCGTAGTGTGAAT 57.141 33.333 23.20 9.61 0.00 2.57
2669 2927 4.737353 ATATGCATGCGTAGTGTGAATG 57.263 40.909 23.20 0.00 0.00 2.67
2670 2928 0.447406 TGCATGCGTAGTGTGAATGC 59.553 50.000 14.09 0.00 43.08 3.56
2671 2929 0.729116 GCATGCGTAGTGTGAATGCT 59.271 50.000 0.00 0.00 40.34 3.79
2672 2930 1.933181 GCATGCGTAGTGTGAATGCTA 59.067 47.619 0.00 0.00 40.34 3.49
2673 2931 2.545526 GCATGCGTAGTGTGAATGCTAT 59.454 45.455 0.00 0.00 40.34 2.97
2674 2932 3.002656 GCATGCGTAGTGTGAATGCTATT 59.997 43.478 0.00 0.00 40.34 1.73
2675 2933 4.496341 GCATGCGTAGTGTGAATGCTATTT 60.496 41.667 0.00 0.00 40.34 1.40
2676 2934 5.572211 CATGCGTAGTGTGAATGCTATTTT 58.428 37.500 0.00 0.00 0.00 1.82
2677 2935 5.621197 TGCGTAGTGTGAATGCTATTTTT 57.379 34.783 0.00 0.00 0.00 1.94
2695 2953 3.517296 TTTTAGCCCATCTCACAACCA 57.483 42.857 0.00 0.00 0.00 3.67
2696 2954 3.517296 TTTAGCCCATCTCACAACCAA 57.483 42.857 0.00 0.00 0.00 3.67
2697 2955 3.737559 TTAGCCCATCTCACAACCAAT 57.262 42.857 0.00 0.00 0.00 3.16
2698 2956 4.853468 TTAGCCCATCTCACAACCAATA 57.147 40.909 0.00 0.00 0.00 1.90
2699 2957 3.287867 AGCCCATCTCACAACCAATAG 57.712 47.619 0.00 0.00 0.00 1.73
2700 2958 2.846206 AGCCCATCTCACAACCAATAGA 59.154 45.455 0.00 0.00 0.00 1.98
2701 2959 3.461085 AGCCCATCTCACAACCAATAGAT 59.539 43.478 0.00 0.00 0.00 1.98
2702 2960 4.660303 AGCCCATCTCACAACCAATAGATA 59.340 41.667 0.00 0.00 0.00 1.98
2703 2961 5.132648 AGCCCATCTCACAACCAATAGATAA 59.867 40.000 0.00 0.00 0.00 1.75
2704 2962 5.239525 GCCCATCTCACAACCAATAGATAAC 59.760 44.000 0.00 0.00 0.00 1.89
2705 2963 5.765182 CCCATCTCACAACCAATAGATAACC 59.235 44.000 0.00 0.00 0.00 2.85
2706 2964 6.356556 CCATCTCACAACCAATAGATAACCA 58.643 40.000 0.00 0.00 0.00 3.67
2707 2965 6.260936 CCATCTCACAACCAATAGATAACCAC 59.739 42.308 0.00 0.00 0.00 4.16
2708 2966 5.741011 TCTCACAACCAATAGATAACCACC 58.259 41.667 0.00 0.00 0.00 4.61
2709 2967 5.487488 TCTCACAACCAATAGATAACCACCT 59.513 40.000 0.00 0.00 0.00 4.00
2710 2968 6.670464 TCTCACAACCAATAGATAACCACCTA 59.330 38.462 0.00 0.00 0.00 3.08
2711 2969 6.884832 TCACAACCAATAGATAACCACCTAG 58.115 40.000 0.00 0.00 0.00 3.02
2712 2970 6.055588 CACAACCAATAGATAACCACCTAGG 58.944 44.000 7.41 7.41 45.67 3.02
2727 2985 6.944234 CCACCTAGGTCCAAGATAATTTTC 57.056 41.667 12.84 0.00 0.00 2.29
2728 2986 6.423182 CCACCTAGGTCCAAGATAATTTTCA 58.577 40.000 12.84 0.00 0.00 2.69
2729 2987 6.889722 CCACCTAGGTCCAAGATAATTTTCAA 59.110 38.462 12.84 0.00 0.00 2.69
2730 2988 7.067494 CCACCTAGGTCCAAGATAATTTTCAAG 59.933 40.741 12.84 0.00 0.00 3.02
2731 2989 6.603599 ACCTAGGTCCAAGATAATTTTCAAGC 59.396 38.462 9.21 0.00 0.00 4.01
2732 2990 5.567138 AGGTCCAAGATAATTTTCAAGCG 57.433 39.130 0.00 0.00 0.00 4.68
2733 2991 4.105486 GGTCCAAGATAATTTTCAAGCGC 58.895 43.478 0.00 0.00 0.00 5.92
2734 2992 3.786048 GTCCAAGATAATTTTCAAGCGCG 59.214 43.478 0.00 0.00 0.00 6.86
2735 2993 2.531508 CCAAGATAATTTTCAAGCGCGC 59.468 45.455 26.66 26.66 0.00 6.86
2736 2994 2.475200 AGATAATTTTCAAGCGCGCC 57.525 45.000 30.33 10.31 0.00 6.53
2737 2995 2.017049 AGATAATTTTCAAGCGCGCCT 58.983 42.857 30.33 13.59 0.00 5.52
2738 2996 2.423538 AGATAATTTTCAAGCGCGCCTT 59.576 40.909 30.33 18.49 0.00 4.35
2739 2997 2.256445 TAATTTTCAAGCGCGCCTTC 57.744 45.000 30.33 0.00 0.00 3.46
2740 2998 0.598065 AATTTTCAAGCGCGCCTTCT 59.402 45.000 30.33 5.98 0.00 2.85
2741 2999 1.448985 ATTTTCAAGCGCGCCTTCTA 58.551 45.000 30.33 9.84 0.00 2.10
2742 3000 1.231221 TTTTCAAGCGCGCCTTCTAA 58.769 45.000 30.33 14.41 0.00 2.10
2743 3001 1.231221 TTTCAAGCGCGCCTTCTAAA 58.769 45.000 30.33 17.92 0.00 1.85
2744 3002 0.515564 TTCAAGCGCGCCTTCTAAAC 59.484 50.000 30.33 0.00 0.00 2.01
2745 3003 1.134694 CAAGCGCGCCTTCTAAACC 59.865 57.895 30.33 0.00 0.00 3.27
2746 3004 2.388232 AAGCGCGCCTTCTAAACCG 61.388 57.895 30.33 0.00 0.00 4.44
2747 3005 3.116531 GCGCGCCTTCTAAACCGT 61.117 61.111 23.24 0.00 0.00 4.83
2748 3006 2.776072 CGCGCCTTCTAAACCGTG 59.224 61.111 0.00 0.00 0.00 4.94
2749 3007 1.735198 CGCGCCTTCTAAACCGTGA 60.735 57.895 0.00 0.00 33.47 4.35
2750 3008 1.785951 GCGCCTTCTAAACCGTGAC 59.214 57.895 0.00 0.00 0.00 3.67
2751 3009 1.952266 GCGCCTTCTAAACCGTGACG 61.952 60.000 0.00 0.00 0.00 4.35
2763 3021 2.789842 CGTGACGGAGGGAGTATCA 58.210 57.895 0.00 0.00 36.25 2.15
2764 3022 1.319541 CGTGACGGAGGGAGTATCAT 58.680 55.000 0.00 0.00 36.25 2.45
2765 3023 2.501261 CGTGACGGAGGGAGTATCATA 58.499 52.381 0.00 0.00 36.25 2.15
2766 3024 2.484651 CGTGACGGAGGGAGTATCATAG 59.515 54.545 0.00 0.00 36.25 2.23
2767 3025 2.820787 GTGACGGAGGGAGTATCATAGG 59.179 54.545 0.00 0.00 36.25 2.57
2768 3026 2.445905 TGACGGAGGGAGTATCATAGGT 59.554 50.000 0.00 0.00 36.25 3.08
2769 3027 2.820787 GACGGAGGGAGTATCATAGGTG 59.179 54.545 0.00 0.00 36.25 4.00
2770 3028 2.171840 CGGAGGGAGTATCATAGGTGG 58.828 57.143 0.00 0.00 36.25 4.61
2771 3029 2.491086 CGGAGGGAGTATCATAGGTGGT 60.491 54.545 0.00 0.00 36.25 4.16
2772 3030 3.166679 GGAGGGAGTATCATAGGTGGTC 58.833 54.545 0.00 0.00 36.25 4.02
2773 3031 3.181416 GGAGGGAGTATCATAGGTGGTCT 60.181 52.174 0.00 0.00 36.25 3.85
2774 3032 4.083565 GAGGGAGTATCATAGGTGGTCTC 58.916 52.174 0.00 0.00 36.25 3.36
2775 3033 3.467483 AGGGAGTATCATAGGTGGTCTCA 59.533 47.826 0.00 0.00 36.25 3.27
2776 3034 4.108778 AGGGAGTATCATAGGTGGTCTCAT 59.891 45.833 0.00 0.00 36.25 2.90
2777 3035 4.841246 GGGAGTATCATAGGTGGTCTCATT 59.159 45.833 0.00 0.00 36.25 2.57
2778 3036 5.308237 GGGAGTATCATAGGTGGTCTCATTT 59.692 44.000 0.00 0.00 36.25 2.32
2779 3037 6.497259 GGGAGTATCATAGGTGGTCTCATTTA 59.503 42.308 0.00 0.00 36.25 1.40
2780 3038 7.181125 GGGAGTATCATAGGTGGTCTCATTTAT 59.819 40.741 0.00 0.00 36.25 1.40
2781 3039 8.598041 GGAGTATCATAGGTGGTCTCATTTATT 58.402 37.037 0.00 0.00 36.25 1.40
2782 3040 9.429359 GAGTATCATAGGTGGTCTCATTTATTG 57.571 37.037 0.00 0.00 33.17 1.90
2783 3041 7.880195 AGTATCATAGGTGGTCTCATTTATTGC 59.120 37.037 0.00 0.00 0.00 3.56
2784 3042 5.376625 TCATAGGTGGTCTCATTTATTGCC 58.623 41.667 0.00 0.00 0.00 4.52
2785 3043 3.737559 AGGTGGTCTCATTTATTGCCA 57.262 42.857 0.00 0.00 0.00 4.92
2786 3044 4.255510 AGGTGGTCTCATTTATTGCCAT 57.744 40.909 0.00 0.00 0.00 4.40
2787 3045 3.956199 AGGTGGTCTCATTTATTGCCATG 59.044 43.478 0.00 0.00 0.00 3.66
2788 3046 3.491447 GGTGGTCTCATTTATTGCCATGC 60.491 47.826 0.00 0.00 0.00 4.06
2789 3047 3.130869 GTGGTCTCATTTATTGCCATGCA 59.869 43.478 0.00 0.00 36.47 3.96
2790 3048 3.962063 TGGTCTCATTTATTGCCATGCAT 59.038 39.130 0.00 0.00 38.76 3.96
2791 3049 4.202172 TGGTCTCATTTATTGCCATGCATG 60.202 41.667 20.19 20.19 38.76 4.06
2792 3050 4.038282 GGTCTCATTTATTGCCATGCATGA 59.962 41.667 28.31 8.76 38.76 3.07
2793 3051 4.980434 GTCTCATTTATTGCCATGCATGAC 59.020 41.667 28.31 17.77 38.76 3.06
2794 3052 4.645588 TCTCATTTATTGCCATGCATGACA 59.354 37.500 28.31 20.53 38.76 3.58
2795 3053 4.684877 TCATTTATTGCCATGCATGACAC 58.315 39.130 28.31 16.49 38.76 3.67
2796 3054 4.159879 TCATTTATTGCCATGCATGACACA 59.840 37.500 28.31 18.81 38.76 3.72
2797 3055 4.739587 TTTATTGCCATGCATGACACAT 57.260 36.364 28.31 18.68 38.76 3.21
2798 3056 5.848833 TTTATTGCCATGCATGACACATA 57.151 34.783 28.31 17.78 38.76 2.29
2799 3057 5.441709 TTATTGCCATGCATGACACATAG 57.558 39.130 28.31 10.23 38.76 2.23
2800 3058 2.423446 TGCCATGCATGACACATAGT 57.577 45.000 28.31 0.00 31.71 2.12
2801 3059 3.557228 TGCCATGCATGACACATAGTA 57.443 42.857 28.31 5.91 31.71 1.82
2802 3060 3.469739 TGCCATGCATGACACATAGTAG 58.530 45.455 28.31 8.01 31.71 2.57
2803 3061 2.225019 GCCATGCATGACACATAGTAGC 59.775 50.000 28.31 14.15 0.00 3.58
2804 3062 3.469739 CCATGCATGACACATAGTAGCA 58.530 45.455 28.31 0.00 37.13 3.49
2805 3063 4.070009 CCATGCATGACACATAGTAGCAT 58.930 43.478 28.31 0.00 41.24 3.79
2806 3064 5.240121 CCATGCATGACACATAGTAGCATA 58.760 41.667 28.31 0.00 39.67 3.14
2807 3065 5.702209 CCATGCATGACACATAGTAGCATAA 59.298 40.000 28.31 0.00 39.67 1.90
2808 3066 6.347969 CCATGCATGACACATAGTAGCATAAC 60.348 42.308 28.31 0.00 39.67 1.89
2809 3067 5.669477 TGCATGACACATAGTAGCATAACA 58.331 37.500 0.00 0.00 30.65 2.41
2810 3068 6.290605 TGCATGACACATAGTAGCATAACAT 58.709 36.000 0.00 0.00 30.65 2.71
2811 3069 6.767423 TGCATGACACATAGTAGCATAACATT 59.233 34.615 0.00 0.00 30.65 2.71
2812 3070 7.282901 TGCATGACACATAGTAGCATAACATTT 59.717 33.333 0.00 0.00 30.65 2.32
2813 3071 8.773645 GCATGACACATAGTAGCATAACATTTA 58.226 33.333 0.00 0.00 0.00 1.40
2871 3129 9.820725 ATCATCTCTCTCTTCTTTAATTGACTG 57.179 33.333 0.00 0.00 0.00 3.51
2872 3130 7.763528 TCATCTCTCTCTTCTTTAATTGACTGC 59.236 37.037 0.00 0.00 0.00 4.40
2873 3131 6.402222 TCTCTCTCTTCTTTAATTGACTGCC 58.598 40.000 0.00 0.00 0.00 4.85
2874 3132 5.491982 TCTCTCTTCTTTAATTGACTGCCC 58.508 41.667 0.00 0.00 0.00 5.36
2875 3133 4.589908 TCTCTTCTTTAATTGACTGCCCC 58.410 43.478 0.00 0.00 0.00 5.80
2876 3134 4.042809 TCTCTTCTTTAATTGACTGCCCCA 59.957 41.667 0.00 0.00 0.00 4.96
2877 3135 4.934356 TCTTCTTTAATTGACTGCCCCAT 58.066 39.130 0.00 0.00 0.00 4.00
2878 3136 6.069673 TCTCTTCTTTAATTGACTGCCCCATA 60.070 38.462 0.00 0.00 0.00 2.74
2879 3137 6.489603 TCTTCTTTAATTGACTGCCCCATAA 58.510 36.000 0.00 0.00 0.00 1.90
2880 3138 6.603201 TCTTCTTTAATTGACTGCCCCATAAG 59.397 38.462 0.00 0.00 0.00 1.73
2881 3139 4.644685 TCTTTAATTGACTGCCCCATAAGC 59.355 41.667 0.00 0.00 0.00 3.09
2882 3140 2.530460 AATTGACTGCCCCATAAGCA 57.470 45.000 0.00 0.00 38.82 3.91
2883 3141 2.761786 ATTGACTGCCCCATAAGCAT 57.238 45.000 0.00 0.00 40.04 3.79
2884 3142 1.766494 TTGACTGCCCCATAAGCATG 58.234 50.000 0.00 0.00 40.04 4.06
2885 3143 0.625316 TGACTGCCCCATAAGCATGT 59.375 50.000 0.00 0.00 40.04 3.21
2886 3144 1.005805 TGACTGCCCCATAAGCATGTT 59.994 47.619 0.00 0.00 40.04 2.71
2887 3145 2.102578 GACTGCCCCATAAGCATGTTT 58.897 47.619 0.00 0.00 40.04 2.83
2888 3146 1.826720 ACTGCCCCATAAGCATGTTTG 59.173 47.619 4.89 0.00 40.04 2.93
2889 3147 1.826720 CTGCCCCATAAGCATGTTTGT 59.173 47.619 4.89 0.00 40.04 2.83
2890 3148 1.549620 TGCCCCATAAGCATGTTTGTG 59.450 47.619 11.32 11.32 34.69 3.33
2891 3149 1.824230 GCCCCATAAGCATGTTTGTGA 59.176 47.619 18.38 0.00 0.00 3.58
2892 3150 2.159198 GCCCCATAAGCATGTTTGTGAG 60.159 50.000 18.38 7.04 0.00 3.51
2893 3151 3.091545 CCCCATAAGCATGTTTGTGAGT 58.908 45.455 18.38 0.00 0.00 3.41
2894 3152 3.129287 CCCCATAAGCATGTTTGTGAGTC 59.871 47.826 18.38 0.00 0.00 3.36
2895 3153 3.129287 CCCATAAGCATGTTTGTGAGTCC 59.871 47.826 18.38 0.00 0.00 3.85
2896 3154 3.129287 CCATAAGCATGTTTGTGAGTCCC 59.871 47.826 18.38 0.00 0.00 4.46
2897 3155 2.363306 AAGCATGTTTGTGAGTCCCA 57.637 45.000 0.00 0.00 0.00 4.37
2898 3156 2.363306 AGCATGTTTGTGAGTCCCAA 57.637 45.000 0.00 0.00 0.00 4.12
2899 3157 2.233271 AGCATGTTTGTGAGTCCCAAG 58.767 47.619 0.00 0.00 0.00 3.61
2900 3158 2.158623 AGCATGTTTGTGAGTCCCAAGA 60.159 45.455 0.00 0.00 0.00 3.02
2901 3159 2.227388 GCATGTTTGTGAGTCCCAAGAG 59.773 50.000 0.00 0.00 0.00 2.85
2902 3160 1.967319 TGTTTGTGAGTCCCAAGAGC 58.033 50.000 0.00 0.00 0.00 4.09
2903 3161 1.211703 TGTTTGTGAGTCCCAAGAGCA 59.788 47.619 0.00 0.00 0.00 4.26
2904 3162 2.158623 TGTTTGTGAGTCCCAAGAGCAT 60.159 45.455 0.00 0.00 0.00 3.79
2905 3163 2.189594 TTGTGAGTCCCAAGAGCATG 57.810 50.000 0.00 0.00 0.00 4.06
2906 3164 1.059098 TGTGAGTCCCAAGAGCATGT 58.941 50.000 0.00 0.00 0.00 3.21
2907 3165 1.421268 TGTGAGTCCCAAGAGCATGTT 59.579 47.619 0.00 0.00 0.00 2.71
2908 3166 1.808945 GTGAGTCCCAAGAGCATGTTG 59.191 52.381 0.00 0.00 39.39 3.33
2909 3167 0.807496 GAGTCCCAAGAGCATGTTGC 59.193 55.000 0.00 0.00 45.46 4.17
2923 3181 5.169836 GCATGTTGCTACTTATGTTACCC 57.830 43.478 0.00 0.00 40.96 3.69
2924 3182 4.036380 GCATGTTGCTACTTATGTTACCCC 59.964 45.833 0.00 0.00 40.96 4.95
2925 3183 4.224991 TGTTGCTACTTATGTTACCCCC 57.775 45.455 0.00 0.00 0.00 5.40
2926 3184 3.587951 TGTTGCTACTTATGTTACCCCCA 59.412 43.478 0.00 0.00 0.00 4.96
2927 3185 3.918294 TGCTACTTATGTTACCCCCAC 57.082 47.619 0.00 0.00 0.00 4.61
2928 3186 3.456842 TGCTACTTATGTTACCCCCACT 58.543 45.455 0.00 0.00 0.00 4.00
2929 3187 4.622815 TGCTACTTATGTTACCCCCACTA 58.377 43.478 0.00 0.00 0.00 2.74
2930 3188 5.221303 TGCTACTTATGTTACCCCCACTAT 58.779 41.667 0.00 0.00 0.00 2.12
2931 3189 5.071250 TGCTACTTATGTTACCCCCACTATG 59.929 44.000 0.00 0.00 0.00 2.23
2932 3190 5.512576 GCTACTTATGTTACCCCCACTATGG 60.513 48.000 0.00 0.00 37.25 2.74
2933 3191 3.137728 ACTTATGTTACCCCCACTATGGC 59.862 47.826 0.00 0.00 35.79 4.40
2934 3192 0.850784 ATGTTACCCCCACTATGGCC 59.149 55.000 0.00 0.00 35.79 5.36
2935 3193 0.550393 TGTTACCCCCACTATGGCCA 60.550 55.000 8.56 8.56 35.79 5.36
2936 3194 0.182775 GTTACCCCCACTATGGCCAG 59.817 60.000 13.05 0.00 35.79 4.85
2937 3195 1.641552 TTACCCCCACTATGGCCAGC 61.642 60.000 13.05 0.00 35.79 4.85
2938 3196 4.209866 CCCCCACTATGGCCAGCC 62.210 72.222 13.05 0.38 35.79 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 2.941064 GGGATAAGCTTCGGTTACCAAC 59.059 50.000 0.00 0.00 0.00 3.77
212 213 3.040206 ATGCATCCAGCTCAGCGGT 62.040 57.895 7.31 0.00 45.94 5.68
383 384 5.067273 CAGTAACTCCATTGGGTTTACACA 58.933 41.667 20.47 0.00 36.76 3.72
389 390 2.986728 AGACCAGTAACTCCATTGGGTT 59.013 45.455 2.09 8.57 34.99 4.11
392 393 4.003648 GTGAAGACCAGTAACTCCATTGG 58.996 47.826 0.00 0.00 36.76 3.16
393 394 4.003648 GGTGAAGACCAGTAACTCCATTG 58.996 47.826 0.00 0.00 42.59 2.82
394 395 3.306780 CGGTGAAGACCAGTAACTCCATT 60.307 47.826 0.00 0.00 43.33 3.16
395 396 2.233922 CGGTGAAGACCAGTAACTCCAT 59.766 50.000 0.00 0.00 43.33 3.41
975 976 0.824759 CCTAGCCACCACTACCTCAC 59.175 60.000 0.00 0.00 0.00 3.51
976 977 0.976073 GCCTAGCCACCACTACCTCA 60.976 60.000 0.00 0.00 0.00 3.86
1092 1093 1.884464 CGCGATCACCCACCTCATG 60.884 63.158 0.00 0.00 0.00 3.07
1484 1488 4.675303 TCTGTGGGGGTGGGGAGG 62.675 72.222 0.00 0.00 0.00 4.30
1528 1761 1.006832 GGCGTCACTATTGCGTTCAT 58.993 50.000 0.00 0.00 0.00 2.57
1609 1842 4.039092 CTGGGGCTGGAGGTGGTG 62.039 72.222 0.00 0.00 0.00 4.17
1640 1873 4.962836 GCTGGTGCTGGTGCTGGT 62.963 66.667 0.00 0.00 40.48 4.00
1837 2077 0.093026 GTCATCGTGCAAGTACGTGC 59.907 55.000 24.50 24.50 44.06 5.34
1838 2078 0.713883 GGTCATCGTGCAAGTACGTG 59.286 55.000 10.30 4.24 44.06 4.49
1839 2079 0.731514 CGGTCATCGTGCAAGTACGT 60.732 55.000 10.30 0.00 44.06 3.57
1840 2080 1.988409 CGGTCATCGTGCAAGTACG 59.012 57.895 4.29 4.29 44.98 3.67
2149 2393 0.181350 ATTGTAGGCCAGGTAGCTGC 59.819 55.000 16.62 11.47 0.00 5.25
2249 2506 4.554292 CATAGTCTCTGGACCAATCGATG 58.446 47.826 0.00 0.00 43.05 3.84
2405 2663 8.562949 ACAAGTATAATACCCCAGAGTAACAT 57.437 34.615 0.00 0.00 0.00 2.71
2406 2664 7.983166 ACAAGTATAATACCCCAGAGTAACA 57.017 36.000 0.00 0.00 0.00 2.41
2407 2665 9.978044 CTAACAAGTATAATACCCCAGAGTAAC 57.022 37.037 0.00 0.00 0.00 2.50
2409 2667 7.234166 GCCTAACAAGTATAATACCCCAGAGTA 59.766 40.741 0.00 0.00 0.00 2.59
2410 2668 6.042897 GCCTAACAAGTATAATACCCCAGAGT 59.957 42.308 0.00 0.00 0.00 3.24
2411 2669 6.270231 AGCCTAACAAGTATAATACCCCAGAG 59.730 42.308 0.00 0.00 0.00 3.35
2413 2671 6.231211 CAGCCTAACAAGTATAATACCCCAG 58.769 44.000 0.00 0.00 0.00 4.45
2414 2672 5.072600 CCAGCCTAACAAGTATAATACCCCA 59.927 44.000 0.00 0.00 0.00 4.96
2415 2673 5.072736 ACCAGCCTAACAAGTATAATACCCC 59.927 44.000 0.00 0.00 0.00 4.95
2416 2674 6.183361 TGACCAGCCTAACAAGTATAATACCC 60.183 42.308 0.00 0.00 0.00 3.69
2417 2675 6.823497 TGACCAGCCTAACAAGTATAATACC 58.177 40.000 0.00 0.00 0.00 2.73
2418 2676 9.640963 CTATGACCAGCCTAACAAGTATAATAC 57.359 37.037 0.00 0.00 0.00 1.89
2430 2688 1.009060 TCCCCACTATGACCAGCCTAA 59.991 52.381 0.00 0.00 0.00 2.69
2431 2689 0.639943 TCCCCACTATGACCAGCCTA 59.360 55.000 0.00 0.00 0.00 3.93
2432 2690 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
2433 2691 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
2434 2692 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
2435 2693 3.576861 TGATACTCCCCACTATGACCAG 58.423 50.000 0.00 0.00 0.00 4.00
2436 2694 3.699025 TGATACTCCCCACTATGACCA 57.301 47.619 0.00 0.00 0.00 4.02
2437 2695 7.126733 AGTATATGATACTCCCCACTATGACC 58.873 42.308 0.00 0.00 0.00 4.02
2438 2696 9.344772 CTAGTATATGATACTCCCCACTATGAC 57.655 40.741 2.44 0.00 0.00 3.06
2439 2697 9.070210 ACTAGTATATGATACTCCCCACTATGA 57.930 37.037 0.00 0.00 0.00 2.15
2443 2701 9.070210 TGATACTAGTATATGATACTCCCCACT 57.930 37.037 15.42 0.00 0.00 4.00
2444 2702 9.869667 ATGATACTAGTATATGATACTCCCCAC 57.130 37.037 15.42 0.00 0.00 4.61
2445 2703 9.868160 CATGATACTAGTATATGATACTCCCCA 57.132 37.037 15.42 5.35 0.00 4.96
2446 2704 8.798402 GCATGATACTAGTATATGATACTCCCC 58.202 40.741 22.89 8.64 0.00 4.81
2447 2705 9.355916 TGCATGATACTAGTATATGATACTCCC 57.644 37.037 22.89 9.00 0.00 4.30
2483 2741 8.860088 TGCACTATGAATGTAGTATCATACACT 58.140 33.333 0.00 0.00 38.43 3.55
2484 2742 9.645059 ATGCACTATGAATGTAGTATCATACAC 57.355 33.333 0.00 0.00 38.43 2.90
2505 2763 9.843334 GGAGTACTAATCTATGTTACTATGCAC 57.157 37.037 0.00 0.00 0.00 4.57
2506 2764 9.021807 GGGAGTACTAATCTATGTTACTATGCA 57.978 37.037 0.00 0.00 0.00 3.96
2507 2765 9.245481 AGGGAGTACTAATCTATGTTACTATGC 57.755 37.037 0.00 0.00 0.00 3.14
2509 2767 9.978336 GGAGGGAGTACTAATCTATGTTACTAT 57.022 37.037 0.00 0.00 0.00 2.12
2510 2768 8.099537 CGGAGGGAGTACTAATCTATGTTACTA 58.900 40.741 0.00 0.00 0.00 1.82
2511 2769 6.941436 CGGAGGGAGTACTAATCTATGTTACT 59.059 42.308 0.00 0.00 0.00 2.24
2512 2770 6.714356 ACGGAGGGAGTACTAATCTATGTTAC 59.286 42.308 0.00 0.00 0.00 2.50
2513 2771 6.845908 ACGGAGGGAGTACTAATCTATGTTA 58.154 40.000 0.00 0.00 0.00 2.41
2514 2772 5.703310 ACGGAGGGAGTACTAATCTATGTT 58.297 41.667 0.00 0.00 0.00 2.71
2515 2773 5.163120 TGACGGAGGGAGTACTAATCTATGT 60.163 44.000 0.00 0.00 0.00 2.29
2516 2774 5.181622 GTGACGGAGGGAGTACTAATCTATG 59.818 48.000 0.00 0.00 0.00 2.23
2517 2775 5.163120 TGTGACGGAGGGAGTACTAATCTAT 60.163 44.000 0.00 0.00 0.00 1.98
2518 2776 4.164796 TGTGACGGAGGGAGTACTAATCTA 59.835 45.833 0.00 0.00 0.00 1.98
2519 2777 3.053842 TGTGACGGAGGGAGTACTAATCT 60.054 47.826 0.00 0.00 0.00 2.40
2520 2778 3.285484 TGTGACGGAGGGAGTACTAATC 58.715 50.000 0.00 0.00 0.00 1.75
2521 2779 3.288964 CTGTGACGGAGGGAGTACTAAT 58.711 50.000 0.00 0.00 0.00 1.73
2522 2780 2.040813 ACTGTGACGGAGGGAGTACTAA 59.959 50.000 0.00 0.00 0.00 2.24
2523 2781 1.632409 ACTGTGACGGAGGGAGTACTA 59.368 52.381 0.00 0.00 0.00 1.82
2524 2782 0.404812 ACTGTGACGGAGGGAGTACT 59.595 55.000 0.00 0.00 0.00 2.73
2525 2783 1.254954 AACTGTGACGGAGGGAGTAC 58.745 55.000 0.00 0.00 0.00 2.73
2526 2784 2.005370 AAACTGTGACGGAGGGAGTA 57.995 50.000 0.00 0.00 0.00 2.59
2527 2785 1.893801 CTAAACTGTGACGGAGGGAGT 59.106 52.381 0.00 0.00 0.00 3.85
2528 2786 2.168496 TCTAAACTGTGACGGAGGGAG 58.832 52.381 0.00 0.00 0.00 4.30
2529 2787 2.297698 TCTAAACTGTGACGGAGGGA 57.702 50.000 0.00 0.00 0.00 4.20
2530 2788 2.353803 CCTTCTAAACTGTGACGGAGGG 60.354 54.545 0.00 0.00 0.00 4.30
2531 2789 2.931320 GCCTTCTAAACTGTGACGGAGG 60.931 54.545 0.00 0.00 0.00 4.30
2532 2790 2.288825 TGCCTTCTAAACTGTGACGGAG 60.289 50.000 0.00 0.00 0.00 4.63
2533 2791 1.689813 TGCCTTCTAAACTGTGACGGA 59.310 47.619 0.00 0.00 0.00 4.69
2534 2792 1.798813 GTGCCTTCTAAACTGTGACGG 59.201 52.381 0.00 0.00 0.00 4.79
2535 2793 2.476619 CTGTGCCTTCTAAACTGTGACG 59.523 50.000 0.00 0.00 0.00 4.35
2536 2794 3.467803 ACTGTGCCTTCTAAACTGTGAC 58.532 45.455 0.00 0.00 0.00 3.67
2537 2795 3.838244 ACTGTGCCTTCTAAACTGTGA 57.162 42.857 0.00 0.00 0.00 3.58
2538 2796 6.371809 TTTAACTGTGCCTTCTAAACTGTG 57.628 37.500 0.00 0.00 0.00 3.66
2539 2797 7.582667 AATTTAACTGTGCCTTCTAAACTGT 57.417 32.000 0.00 0.00 0.00 3.55
2540 2798 7.096065 GCAAATTTAACTGTGCCTTCTAAACTG 60.096 37.037 0.00 0.00 0.00 3.16
2541 2799 6.923508 GCAAATTTAACTGTGCCTTCTAAACT 59.076 34.615 0.00 0.00 0.00 2.66
2542 2800 6.129194 CGCAAATTTAACTGTGCCTTCTAAAC 60.129 38.462 2.62 0.00 33.33 2.01
2543 2801 5.918011 CGCAAATTTAACTGTGCCTTCTAAA 59.082 36.000 2.62 0.00 33.33 1.85
2544 2802 5.009210 ACGCAAATTTAACTGTGCCTTCTAA 59.991 36.000 2.62 0.00 33.33 2.10
2545 2803 4.517453 ACGCAAATTTAACTGTGCCTTCTA 59.483 37.500 2.62 0.00 33.33 2.10
2546 2804 3.317993 ACGCAAATTTAACTGTGCCTTCT 59.682 39.130 2.62 0.00 33.33 2.85
2547 2805 3.425193 CACGCAAATTTAACTGTGCCTTC 59.575 43.478 2.62 0.00 33.33 3.46
2548 2806 3.380142 CACGCAAATTTAACTGTGCCTT 58.620 40.909 2.62 0.00 33.33 4.35
2549 2807 2.862140 GCACGCAAATTTAACTGTGCCT 60.862 45.455 18.16 0.00 45.07 4.75
2550 2808 1.455408 GCACGCAAATTTAACTGTGCC 59.545 47.619 18.16 7.14 45.07 5.01
2551 2809 1.122323 CGCACGCAAATTTAACTGTGC 59.878 47.619 18.62 18.62 46.73 4.57
2552 2810 2.380660 ACGCACGCAAATTTAACTGTG 58.619 42.857 0.00 0.00 0.00 3.66
2553 2811 2.766970 ACGCACGCAAATTTAACTGT 57.233 40.000 0.00 0.00 0.00 3.55
2554 2812 4.027295 TGAAAACGCACGCAAATTTAACTG 60.027 37.500 0.00 0.00 0.00 3.16
2555 2813 4.027214 GTGAAAACGCACGCAAATTTAACT 60.027 37.500 0.00 0.00 0.00 2.24
2556 2814 4.190424 GTGAAAACGCACGCAAATTTAAC 58.810 39.130 0.00 0.00 0.00 2.01
2557 2815 3.857665 TGTGAAAACGCACGCAAATTTAA 59.142 34.783 0.00 0.00 41.63 1.52
2558 2816 3.435566 TGTGAAAACGCACGCAAATTTA 58.564 36.364 0.00 0.00 41.63 1.40
2559 2817 2.263077 TGTGAAAACGCACGCAAATTT 58.737 38.095 0.00 0.00 41.63 1.82
2560 2818 1.914634 TGTGAAAACGCACGCAAATT 58.085 40.000 0.00 0.00 41.63 1.82
2561 2819 1.914634 TTGTGAAAACGCACGCAAAT 58.085 40.000 0.00 0.00 41.63 2.32
2562 2820 1.914634 ATTGTGAAAACGCACGCAAA 58.085 40.000 0.00 0.00 41.63 3.68
2563 2821 2.288186 TCTATTGTGAAAACGCACGCAA 59.712 40.909 0.00 0.00 41.63 4.85
2564 2822 1.867865 TCTATTGTGAAAACGCACGCA 59.132 42.857 0.00 0.00 41.63 5.24
2565 2823 2.230864 GTCTATTGTGAAAACGCACGC 58.769 47.619 0.00 0.00 41.63 5.34
2566 2824 3.513462 TGTCTATTGTGAAAACGCACG 57.487 42.857 0.00 0.00 41.63 5.34
2567 2825 4.219033 CCTTGTCTATTGTGAAAACGCAC 58.781 43.478 0.00 0.00 39.22 5.34
2568 2826 3.880490 ACCTTGTCTATTGTGAAAACGCA 59.120 39.130 0.00 0.00 0.00 5.24
2569 2827 4.483476 ACCTTGTCTATTGTGAAAACGC 57.517 40.909 0.00 0.00 0.00 4.84
2570 2828 7.075741 CCTAAACCTTGTCTATTGTGAAAACG 58.924 38.462 0.00 0.00 0.00 3.60
2571 2829 7.368059 CCCTAAACCTTGTCTATTGTGAAAAC 58.632 38.462 0.00 0.00 0.00 2.43
2572 2830 6.015772 GCCCTAAACCTTGTCTATTGTGAAAA 60.016 38.462 0.00 0.00 0.00 2.29
2573 2831 5.475564 GCCCTAAACCTTGTCTATTGTGAAA 59.524 40.000 0.00 0.00 0.00 2.69
2574 2832 5.007682 GCCCTAAACCTTGTCTATTGTGAA 58.992 41.667 0.00 0.00 0.00 3.18
2575 2833 4.585879 GCCCTAAACCTTGTCTATTGTGA 58.414 43.478 0.00 0.00 0.00 3.58
2576 2834 3.374058 CGCCCTAAACCTTGTCTATTGTG 59.626 47.826 0.00 0.00 0.00 3.33
2577 2835 3.606687 CGCCCTAAACCTTGTCTATTGT 58.393 45.455 0.00 0.00 0.00 2.71
2578 2836 2.354821 GCGCCCTAAACCTTGTCTATTG 59.645 50.000 0.00 0.00 0.00 1.90
2579 2837 2.026636 TGCGCCCTAAACCTTGTCTATT 60.027 45.455 4.18 0.00 0.00 1.73
2580 2838 1.557832 TGCGCCCTAAACCTTGTCTAT 59.442 47.619 4.18 0.00 0.00 1.98
2581 2839 0.978151 TGCGCCCTAAACCTTGTCTA 59.022 50.000 4.18 0.00 0.00 2.59
2582 2840 0.328258 ATGCGCCCTAAACCTTGTCT 59.672 50.000 4.18 0.00 0.00 3.41
2583 2841 1.135402 CAATGCGCCCTAAACCTTGTC 60.135 52.381 4.18 0.00 0.00 3.18
2584 2842 0.887933 CAATGCGCCCTAAACCTTGT 59.112 50.000 4.18 0.00 0.00 3.16
2585 2843 0.458370 GCAATGCGCCCTAAACCTTG 60.458 55.000 4.18 0.00 32.94 3.61
2586 2844 0.897863 TGCAATGCGCCCTAAACCTT 60.898 50.000 4.18 0.00 41.33 3.50
2587 2845 0.684153 ATGCAATGCGCCCTAAACCT 60.684 50.000 4.18 0.00 41.33 3.50
2588 2846 0.175531 AATGCAATGCGCCCTAAACC 59.824 50.000 4.18 0.00 41.33 3.27
2589 2847 2.008752 AAATGCAATGCGCCCTAAAC 57.991 45.000 4.18 0.00 41.33 2.01
2590 2848 4.399004 AATAAATGCAATGCGCCCTAAA 57.601 36.364 4.18 0.00 41.33 1.85
2591 2849 4.099266 AGAAATAAATGCAATGCGCCCTAA 59.901 37.500 4.18 0.00 41.33 2.69
2592 2850 3.636300 AGAAATAAATGCAATGCGCCCTA 59.364 39.130 4.18 0.00 41.33 3.53
2593 2851 2.431782 AGAAATAAATGCAATGCGCCCT 59.568 40.909 4.18 0.00 41.33 5.19
2594 2852 2.825205 AGAAATAAATGCAATGCGCCC 58.175 42.857 4.18 0.00 41.33 6.13
2595 2853 4.610945 ACTAGAAATAAATGCAATGCGCC 58.389 39.130 4.18 0.00 41.33 6.53
2596 2854 5.340667 GCTACTAGAAATAAATGCAATGCGC 59.659 40.000 0.00 0.00 42.89 6.09
2597 2855 6.662616 AGCTACTAGAAATAAATGCAATGCG 58.337 36.000 0.00 0.00 0.00 4.73
2609 2867 9.790344 TCGGAGTACTAATTAGCTACTAGAAAT 57.210 33.333 19.17 0.00 0.00 2.17
2610 2868 9.790344 ATCGGAGTACTAATTAGCTACTAGAAA 57.210 33.333 19.17 11.04 0.00 2.52
2632 2890 9.797473 CGCATGCATATAAAAATAGTATATCGG 57.203 33.333 19.57 0.00 0.00 4.18
2638 2896 9.483916 ACACTACGCATGCATATAAAAATAGTA 57.516 29.630 19.57 6.04 0.00 1.82
2639 2897 8.282592 CACACTACGCATGCATATAAAAATAGT 58.717 33.333 19.57 5.11 0.00 2.12
2640 2898 8.495148 TCACACTACGCATGCATATAAAAATAG 58.505 33.333 19.57 6.89 0.00 1.73
2641 2899 8.371770 TCACACTACGCATGCATATAAAAATA 57.628 30.769 19.57 0.00 0.00 1.40
2642 2900 7.258022 TCACACTACGCATGCATATAAAAAT 57.742 32.000 19.57 0.00 0.00 1.82
2643 2901 6.670077 TCACACTACGCATGCATATAAAAA 57.330 33.333 19.57 0.00 0.00 1.94
2644 2902 6.670077 TTCACACTACGCATGCATATAAAA 57.330 33.333 19.57 0.00 0.00 1.52
2645 2903 6.657888 CATTCACACTACGCATGCATATAAA 58.342 36.000 19.57 1.53 0.00 1.40
2646 2904 5.334028 GCATTCACACTACGCATGCATATAA 60.334 40.000 19.57 0.86 40.06 0.98
2647 2905 4.152223 GCATTCACACTACGCATGCATATA 59.848 41.667 19.57 5.83 40.06 0.86
2648 2906 3.058708 GCATTCACACTACGCATGCATAT 60.059 43.478 19.57 4.84 40.06 1.78
2649 2907 2.287644 GCATTCACACTACGCATGCATA 59.712 45.455 19.57 5.77 40.06 3.14
2650 2908 1.064505 GCATTCACACTACGCATGCAT 59.935 47.619 19.57 4.54 40.06 3.96
2651 2909 0.447406 GCATTCACACTACGCATGCA 59.553 50.000 19.57 0.00 40.06 3.96
2652 2910 0.729116 AGCATTCACACTACGCATGC 59.271 50.000 7.91 7.91 40.53 4.06
2653 2911 4.801147 AATAGCATTCACACTACGCATG 57.199 40.909 0.00 0.00 0.00 4.06
2654 2912 5.818136 AAAATAGCATTCACACTACGCAT 57.182 34.783 0.00 0.00 0.00 4.73
2655 2913 5.621197 AAAAATAGCATTCACACTACGCA 57.379 34.783 0.00 0.00 0.00 5.24
2674 2932 3.838565 TGGTTGTGAGATGGGCTAAAAA 58.161 40.909 0.00 0.00 0.00 1.94
2675 2933 3.517296 TGGTTGTGAGATGGGCTAAAA 57.483 42.857 0.00 0.00 0.00 1.52
2676 2934 3.517296 TTGGTTGTGAGATGGGCTAAA 57.483 42.857 0.00 0.00 0.00 1.85
2677 2935 3.737559 ATTGGTTGTGAGATGGGCTAA 57.262 42.857 0.00 0.00 0.00 3.09
2678 2936 4.037222 TCTATTGGTTGTGAGATGGGCTA 58.963 43.478 0.00 0.00 0.00 3.93
2679 2937 2.846206 TCTATTGGTTGTGAGATGGGCT 59.154 45.455 0.00 0.00 0.00 5.19
2680 2938 3.281727 TCTATTGGTTGTGAGATGGGC 57.718 47.619 0.00 0.00 0.00 5.36
2681 2939 5.765182 GGTTATCTATTGGTTGTGAGATGGG 59.235 44.000 0.00 0.00 31.25 4.00
2682 2940 6.260936 GTGGTTATCTATTGGTTGTGAGATGG 59.739 42.308 0.00 0.00 31.25 3.51
2683 2941 6.260936 GGTGGTTATCTATTGGTTGTGAGATG 59.739 42.308 0.00 0.00 31.25 2.90
2684 2942 6.158695 AGGTGGTTATCTATTGGTTGTGAGAT 59.841 38.462 0.00 0.00 33.32 2.75
2685 2943 5.487488 AGGTGGTTATCTATTGGTTGTGAGA 59.513 40.000 0.00 0.00 0.00 3.27
2686 2944 5.745227 AGGTGGTTATCTATTGGTTGTGAG 58.255 41.667 0.00 0.00 0.00 3.51
2687 2945 5.772393 AGGTGGTTATCTATTGGTTGTGA 57.228 39.130 0.00 0.00 0.00 3.58
2688 2946 6.055588 CCTAGGTGGTTATCTATTGGTTGTG 58.944 44.000 0.00 0.00 0.00 3.33
2689 2947 6.248569 CCTAGGTGGTTATCTATTGGTTGT 57.751 41.667 0.00 0.00 0.00 3.32
2704 2962 6.423182 TGAAAATTATCTTGGACCTAGGTGG 58.577 40.000 22.10 6.79 42.93 4.61
2705 2963 7.415653 GCTTGAAAATTATCTTGGACCTAGGTG 60.416 40.741 22.10 4.66 0.00 4.00
2706 2964 6.603599 GCTTGAAAATTATCTTGGACCTAGGT 59.396 38.462 16.26 16.26 0.00 3.08
2707 2965 6.238484 CGCTTGAAAATTATCTTGGACCTAGG 60.238 42.308 7.41 7.41 0.00 3.02
2708 2966 6.719365 CGCTTGAAAATTATCTTGGACCTAG 58.281 40.000 0.00 0.00 0.00 3.02
2709 2967 5.065988 GCGCTTGAAAATTATCTTGGACCTA 59.934 40.000 0.00 0.00 0.00 3.08
2710 2968 4.142381 GCGCTTGAAAATTATCTTGGACCT 60.142 41.667 0.00 0.00 0.00 3.85
2711 2969 4.105486 GCGCTTGAAAATTATCTTGGACC 58.895 43.478 0.00 0.00 0.00 4.46
2712 2970 3.786048 CGCGCTTGAAAATTATCTTGGAC 59.214 43.478 5.56 0.00 0.00 4.02
2713 2971 3.730662 GCGCGCTTGAAAATTATCTTGGA 60.731 43.478 26.67 0.00 0.00 3.53
2714 2972 2.531508 GCGCGCTTGAAAATTATCTTGG 59.468 45.455 26.67 0.00 0.00 3.61
2715 2973 2.531508 GGCGCGCTTGAAAATTATCTTG 59.468 45.455 32.29 0.00 0.00 3.02
2716 2974 2.423538 AGGCGCGCTTGAAAATTATCTT 59.576 40.909 32.29 0.00 0.00 2.40
2717 2975 2.017049 AGGCGCGCTTGAAAATTATCT 58.983 42.857 32.29 11.82 0.00 1.98
2718 2976 2.475200 AGGCGCGCTTGAAAATTATC 57.525 45.000 32.29 9.40 0.00 1.75
2719 2977 2.423538 AGAAGGCGCGCTTGAAAATTAT 59.576 40.909 32.29 5.03 0.00 1.28
2720 2978 1.810151 AGAAGGCGCGCTTGAAAATTA 59.190 42.857 32.29 0.00 0.00 1.40
2721 2979 0.598065 AGAAGGCGCGCTTGAAAATT 59.402 45.000 32.29 6.83 0.00 1.82
2722 2980 1.448985 TAGAAGGCGCGCTTGAAAAT 58.551 45.000 32.29 7.73 0.00 1.82
2723 2981 1.231221 TTAGAAGGCGCGCTTGAAAA 58.769 45.000 32.29 16.96 0.00 2.29
2724 2982 1.069500 GTTTAGAAGGCGCGCTTGAAA 60.069 47.619 32.29 20.57 0.00 2.69
2725 2983 0.515564 GTTTAGAAGGCGCGCTTGAA 59.484 50.000 32.29 15.78 0.00 2.69
2726 2984 1.296056 GGTTTAGAAGGCGCGCTTGA 61.296 55.000 32.29 10.01 0.00 3.02
2727 2985 1.134694 GGTTTAGAAGGCGCGCTTG 59.865 57.895 32.29 0.00 0.00 4.01
2728 2986 2.388232 CGGTTTAGAAGGCGCGCTT 61.388 57.895 32.29 23.01 0.00 4.68
2729 2987 2.813908 CGGTTTAGAAGGCGCGCT 60.814 61.111 32.29 12.85 0.00 5.92
2730 2988 3.116531 ACGGTTTAGAAGGCGCGC 61.117 61.111 25.94 25.94 0.00 6.86
2731 2989 1.735198 TCACGGTTTAGAAGGCGCG 60.735 57.895 0.00 0.00 0.00 6.86
2732 2990 1.785951 GTCACGGTTTAGAAGGCGC 59.214 57.895 0.00 0.00 0.00 6.53
2733 2991 1.349259 CCGTCACGGTTTAGAAGGCG 61.349 60.000 8.54 0.00 42.73 5.52
2734 2992 2.452767 CCGTCACGGTTTAGAAGGC 58.547 57.895 8.54 0.00 42.73 4.35
2745 3003 1.319541 ATGATACTCCCTCCGTCACG 58.680 55.000 0.00 0.00 0.00 4.35
2746 3004 2.820787 CCTATGATACTCCCTCCGTCAC 59.179 54.545 0.00 0.00 0.00 3.67
2747 3005 2.445905 ACCTATGATACTCCCTCCGTCA 59.554 50.000 0.00 0.00 0.00 4.35
2748 3006 2.820787 CACCTATGATACTCCCTCCGTC 59.179 54.545 0.00 0.00 0.00 4.79
2749 3007 2.491086 CCACCTATGATACTCCCTCCGT 60.491 54.545 0.00 0.00 0.00 4.69
2750 3008 2.171840 CCACCTATGATACTCCCTCCG 58.828 57.143 0.00 0.00 0.00 4.63
2751 3009 3.166679 GACCACCTATGATACTCCCTCC 58.833 54.545 0.00 0.00 0.00 4.30
2752 3010 4.083565 GAGACCACCTATGATACTCCCTC 58.916 52.174 0.00 0.00 0.00 4.30
2753 3011 3.467483 TGAGACCACCTATGATACTCCCT 59.533 47.826 0.00 0.00 0.00 4.20
2754 3012 3.845860 TGAGACCACCTATGATACTCCC 58.154 50.000 0.00 0.00 0.00 4.30
2755 3013 6.426646 AAATGAGACCACCTATGATACTCC 57.573 41.667 0.00 0.00 0.00 3.85
2756 3014 9.429359 CAATAAATGAGACCACCTATGATACTC 57.571 37.037 0.00 0.00 0.00 2.59
2757 3015 7.880195 GCAATAAATGAGACCACCTATGATACT 59.120 37.037 0.00 0.00 0.00 2.12
2758 3016 7.119846 GGCAATAAATGAGACCACCTATGATAC 59.880 40.741 0.00 0.00 0.00 2.24
2759 3017 7.168219 GGCAATAAATGAGACCACCTATGATA 58.832 38.462 0.00 0.00 0.00 2.15
2760 3018 6.006449 GGCAATAAATGAGACCACCTATGAT 58.994 40.000 0.00 0.00 0.00 2.45
2761 3019 5.104151 TGGCAATAAATGAGACCACCTATGA 60.104 40.000 0.00 0.00 0.00 2.15
2762 3020 5.132502 TGGCAATAAATGAGACCACCTATG 58.867 41.667 0.00 0.00 0.00 2.23
2763 3021 5.387113 TGGCAATAAATGAGACCACCTAT 57.613 39.130 0.00 0.00 0.00 2.57
2764 3022 4.853468 TGGCAATAAATGAGACCACCTA 57.147 40.909 0.00 0.00 0.00 3.08
2765 3023 3.737559 TGGCAATAAATGAGACCACCT 57.262 42.857 0.00 0.00 0.00 4.00
2766 3024 3.491447 GCATGGCAATAAATGAGACCACC 60.491 47.826 0.00 0.00 0.00 4.61
2767 3025 3.130869 TGCATGGCAATAAATGAGACCAC 59.869 43.478 0.00 0.00 34.76 4.16
2768 3026 3.363627 TGCATGGCAATAAATGAGACCA 58.636 40.909 0.00 0.00 34.76 4.02
2769 3027 4.038282 TCATGCATGGCAATAAATGAGACC 59.962 41.667 25.97 0.00 43.62 3.85
2770 3028 4.980434 GTCATGCATGGCAATAAATGAGAC 59.020 41.667 26.04 8.36 43.62 3.36
2771 3029 4.645588 TGTCATGCATGGCAATAAATGAGA 59.354 37.500 30.82 3.91 43.62 3.27
2772 3030 4.743151 GTGTCATGCATGGCAATAAATGAG 59.257 41.667 34.01 0.13 44.94 2.90
2773 3031 4.159879 TGTGTCATGCATGGCAATAAATGA 59.840 37.500 34.01 7.61 44.94 2.57
2774 3032 4.434520 TGTGTCATGCATGGCAATAAATG 58.565 39.130 34.01 2.58 44.94 2.32
2775 3033 4.739587 TGTGTCATGCATGGCAATAAAT 57.260 36.364 34.01 0.00 44.94 1.40
2776 3034 4.739587 ATGTGTCATGCATGGCAATAAA 57.260 36.364 34.01 20.14 44.94 1.40
2777 3035 4.888823 ACTATGTGTCATGCATGGCAATAA 59.111 37.500 34.01 22.53 44.94 1.40
2778 3036 4.463070 ACTATGTGTCATGCATGGCAATA 58.537 39.130 34.01 27.05 44.94 1.90
2779 3037 3.293337 ACTATGTGTCATGCATGGCAAT 58.707 40.909 34.01 27.34 44.94 3.56
2780 3038 2.725637 ACTATGTGTCATGCATGGCAA 58.274 42.857 34.01 23.37 44.94 4.52
2781 3039 2.423446 ACTATGTGTCATGCATGGCA 57.577 45.000 29.45 29.45 44.86 4.92
2782 3040 2.225019 GCTACTATGTGTCATGCATGGC 59.775 50.000 24.40 24.40 0.00 4.40
2783 3041 3.469739 TGCTACTATGTGTCATGCATGG 58.530 45.455 25.97 10.76 0.00 3.66
2784 3042 6.203338 TGTTATGCTACTATGTGTCATGCATG 59.797 38.462 21.07 21.07 39.07 4.06
2785 3043 6.290605 TGTTATGCTACTATGTGTCATGCAT 58.709 36.000 0.00 0.00 40.50 3.96
2786 3044 5.669477 TGTTATGCTACTATGTGTCATGCA 58.331 37.500 0.00 0.00 35.34 3.96
2787 3045 6.791887 ATGTTATGCTACTATGTGTCATGC 57.208 37.500 0.00 0.00 0.00 4.06
2845 3103 9.820725 CAGTCAATTAAAGAAGAGAGAGATGAT 57.179 33.333 0.00 0.00 0.00 2.45
2846 3104 7.763528 GCAGTCAATTAAAGAAGAGAGAGATGA 59.236 37.037 0.00 0.00 0.00 2.92
2847 3105 7.011295 GGCAGTCAATTAAAGAAGAGAGAGATG 59.989 40.741 0.00 0.00 0.00 2.90
2848 3106 7.047271 GGCAGTCAATTAAAGAAGAGAGAGAT 58.953 38.462 0.00 0.00 0.00 2.75
2849 3107 6.402222 GGCAGTCAATTAAAGAAGAGAGAGA 58.598 40.000 0.00 0.00 0.00 3.10
2850 3108 5.584251 GGGCAGTCAATTAAAGAAGAGAGAG 59.416 44.000 0.00 0.00 0.00 3.20
2851 3109 5.491982 GGGCAGTCAATTAAAGAAGAGAGA 58.508 41.667 0.00 0.00 0.00 3.10
2852 3110 4.637977 GGGGCAGTCAATTAAAGAAGAGAG 59.362 45.833 0.00 0.00 0.00 3.20
2853 3111 4.042809 TGGGGCAGTCAATTAAAGAAGAGA 59.957 41.667 0.00 0.00 0.00 3.10
2854 3112 4.335416 TGGGGCAGTCAATTAAAGAAGAG 58.665 43.478 0.00 0.00 0.00 2.85
2855 3113 4.380843 TGGGGCAGTCAATTAAAGAAGA 57.619 40.909 0.00 0.00 0.00 2.87
2856 3114 6.681368 GCTTATGGGGCAGTCAATTAAAGAAG 60.681 42.308 0.00 0.00 0.00 2.85
2857 3115 5.127031 GCTTATGGGGCAGTCAATTAAAGAA 59.873 40.000 0.00 0.00 0.00 2.52
2858 3116 4.644685 GCTTATGGGGCAGTCAATTAAAGA 59.355 41.667 0.00 0.00 0.00 2.52
2859 3117 4.402155 TGCTTATGGGGCAGTCAATTAAAG 59.598 41.667 0.00 0.00 34.56 1.85
2860 3118 4.348486 TGCTTATGGGGCAGTCAATTAAA 58.652 39.130 0.00 0.00 34.56 1.52
2861 3119 3.974719 TGCTTATGGGGCAGTCAATTAA 58.025 40.909 0.00 0.00 34.56 1.40
2862 3120 3.660970 TGCTTATGGGGCAGTCAATTA 57.339 42.857 0.00 0.00 34.56 1.40
2863 3121 2.530460 TGCTTATGGGGCAGTCAATT 57.470 45.000 0.00 0.00 34.56 2.32
2864 3122 2.313317 CATGCTTATGGGGCAGTCAAT 58.687 47.619 0.00 0.00 43.15 2.57
2865 3123 1.005805 ACATGCTTATGGGGCAGTCAA 59.994 47.619 0.00 0.00 43.15 3.18
2866 3124 0.625316 ACATGCTTATGGGGCAGTCA 59.375 50.000 0.00 0.00 43.15 3.41
2867 3125 1.767759 AACATGCTTATGGGGCAGTC 58.232 50.000 0.00 0.00 43.15 3.51
2868 3126 1.826720 CAAACATGCTTATGGGGCAGT 59.173 47.619 0.00 0.00 43.15 4.40
2869 3127 1.826720 ACAAACATGCTTATGGGGCAG 59.173 47.619 0.00 0.00 43.15 4.85
2870 3128 1.549620 CACAAACATGCTTATGGGGCA 59.450 47.619 0.00 0.00 44.05 5.36
2871 3129 1.824230 TCACAAACATGCTTATGGGGC 59.176 47.619 0.00 0.00 0.00 5.80
2872 3130 3.091545 ACTCACAAACATGCTTATGGGG 58.908 45.455 0.00 0.00 0.00 4.96
2873 3131 3.129287 GGACTCACAAACATGCTTATGGG 59.871 47.826 0.00 0.00 0.00 4.00
2874 3132 3.129287 GGGACTCACAAACATGCTTATGG 59.871 47.826 0.00 0.00 0.00 2.74
2875 3133 3.758023 TGGGACTCACAAACATGCTTATG 59.242 43.478 0.00 0.00 0.00 1.90
2876 3134 4.032960 TGGGACTCACAAACATGCTTAT 57.967 40.909 0.00 0.00 0.00 1.73
2877 3135 3.500448 TGGGACTCACAAACATGCTTA 57.500 42.857 0.00 0.00 0.00 3.09
2878 3136 2.363306 TGGGACTCACAAACATGCTT 57.637 45.000 0.00 0.00 0.00 3.91
2879 3137 2.158623 TCTTGGGACTCACAAACATGCT 60.159 45.455 0.00 0.00 0.00 3.79
2880 3138 2.227388 CTCTTGGGACTCACAAACATGC 59.773 50.000 0.00 0.00 0.00 4.06
2881 3139 2.227388 GCTCTTGGGACTCACAAACATG 59.773 50.000 0.00 0.00 0.00 3.21
2882 3140 2.158623 TGCTCTTGGGACTCACAAACAT 60.159 45.455 0.00 0.00 0.00 2.71
2883 3141 1.211703 TGCTCTTGGGACTCACAAACA 59.788 47.619 0.00 0.00 0.00 2.83
2884 3142 1.967319 TGCTCTTGGGACTCACAAAC 58.033 50.000 0.00 0.00 0.00 2.93
2885 3143 2.158623 ACATGCTCTTGGGACTCACAAA 60.159 45.455 0.00 0.00 0.00 2.83
2886 3144 1.421268 ACATGCTCTTGGGACTCACAA 59.579 47.619 0.00 0.00 0.00 3.33
2887 3145 1.059098 ACATGCTCTTGGGACTCACA 58.941 50.000 0.00 0.00 0.00 3.58
2888 3146 1.808945 CAACATGCTCTTGGGACTCAC 59.191 52.381 0.00 0.00 0.00 3.51
2889 3147 1.883638 GCAACATGCTCTTGGGACTCA 60.884 52.381 0.00 0.00 40.96 3.41
2890 3148 0.807496 GCAACATGCTCTTGGGACTC 59.193 55.000 0.00 0.00 40.96 3.36
2891 3149 2.952714 GCAACATGCTCTTGGGACT 58.047 52.632 0.00 0.00 40.96 3.85
2897 3155 8.544009 GGGTAACATAAGTAGCAACATGCTCTT 61.544 40.741 8.32 13.28 46.86 2.85
2898 3156 7.130963 GGGTAACATAAGTAGCAACATGCTCT 61.131 42.308 8.32 3.62 46.86 4.09
2899 3157 5.007724 GGGTAACATAAGTAGCAACATGCTC 59.992 44.000 8.32 1.36 46.86 4.26
2901 3159 4.036380 GGGGTAACATAAGTAGCAACATGC 59.964 45.833 0.00 0.00 41.28 4.06
2902 3160 4.578928 GGGGGTAACATAAGTAGCAACATG 59.421 45.833 0.00 0.00 39.74 3.21
2903 3161 4.228666 TGGGGGTAACATAAGTAGCAACAT 59.771 41.667 0.00 0.00 39.74 2.71
2904 3162 3.587951 TGGGGGTAACATAAGTAGCAACA 59.412 43.478 0.00 0.00 39.74 3.33
2905 3163 3.943381 GTGGGGGTAACATAAGTAGCAAC 59.057 47.826 0.00 0.00 39.74 4.17
2906 3164 3.847780 AGTGGGGGTAACATAAGTAGCAA 59.152 43.478 0.00 0.00 39.74 3.91
2907 3165 3.456842 AGTGGGGGTAACATAAGTAGCA 58.543 45.455 0.00 0.00 39.74 3.49
2908 3166 5.512576 CCATAGTGGGGGTAACATAAGTAGC 60.513 48.000 0.00 0.00 39.74 3.58
2909 3167 5.512576 GCCATAGTGGGGGTAACATAAGTAG 60.513 48.000 0.00 0.00 38.19 2.57
2910 3168 4.348754 GCCATAGTGGGGGTAACATAAGTA 59.651 45.833 0.00 0.00 38.19 2.24
2911 3169 3.137728 GCCATAGTGGGGGTAACATAAGT 59.862 47.826 0.00 0.00 38.19 2.24
2912 3170 3.497942 GGCCATAGTGGGGGTAACATAAG 60.498 52.174 0.00 0.00 38.19 1.73
2913 3171 2.444010 GGCCATAGTGGGGGTAACATAA 59.556 50.000 0.00 0.00 38.19 1.90
2914 3172 2.059490 GGCCATAGTGGGGGTAACATA 58.941 52.381 0.00 0.00 38.19 2.29
2915 3173 0.850784 GGCCATAGTGGGGGTAACAT 59.149 55.000 0.00 0.00 38.19 2.71
2916 3174 0.550393 TGGCCATAGTGGGGGTAACA 60.550 55.000 0.00 0.00 38.19 2.41
2917 3175 0.182775 CTGGCCATAGTGGGGGTAAC 59.817 60.000 5.51 0.00 38.19 2.50
2918 3176 1.641552 GCTGGCCATAGTGGGGGTAA 61.642 60.000 5.51 0.00 38.19 2.85
2919 3177 2.076184 GCTGGCCATAGTGGGGGTA 61.076 63.158 5.51 0.00 38.19 3.69
2920 3178 3.420482 GCTGGCCATAGTGGGGGT 61.420 66.667 5.51 0.00 38.19 4.95
2921 3179 4.209866 GGCTGGCCATAGTGGGGG 62.210 72.222 5.51 0.00 38.19 5.40
2922 3180 1.352622 TAAGGCTGGCCATAGTGGGG 61.353 60.000 5.51 0.00 38.19 4.96
2923 3181 0.109342 CTAAGGCTGGCCATAGTGGG 59.891 60.000 5.51 0.00 38.19 4.61
2924 3182 0.109342 CCTAAGGCTGGCCATAGTGG 59.891 60.000 18.51 0.02 41.55 4.00
2925 3183 0.839946 ACCTAAGGCTGGCCATAGTG 59.160 55.000 18.51 13.54 36.09 2.74
2926 3184 1.132500 GACCTAAGGCTGGCCATAGT 58.868 55.000 18.51 9.00 36.09 2.12
2927 3185 0.398318 GGACCTAAGGCTGGCCATAG 59.602 60.000 5.51 14.54 37.20 2.23
2928 3186 0.327095 TGGACCTAAGGCTGGCCATA 60.327 55.000 5.51 5.41 38.92 2.74
2929 3187 1.619363 TGGACCTAAGGCTGGCCAT 60.619 57.895 5.51 4.39 38.92 4.40
2930 3188 2.204074 TGGACCTAAGGCTGGCCA 60.204 61.111 14.39 4.71 38.92 5.36
2931 3189 2.272471 GTGGACCTAAGGCTGGCC 59.728 66.667 3.00 3.00 0.00 5.36
2932 3190 2.272471 GGTGGACCTAAGGCTGGC 59.728 66.667 0.00 0.00 0.00 4.85
2933 3191 1.604378 CTGGTGGACCTAAGGCTGG 59.396 63.158 0.00 0.00 36.82 4.85
2934 3192 1.604378 CCTGGTGGACCTAAGGCTG 59.396 63.158 0.00 0.00 36.82 4.85
2935 3193 1.616628 CCCTGGTGGACCTAAGGCT 60.617 63.158 0.00 0.00 35.39 4.58
2936 3194 2.998949 CCCTGGTGGACCTAAGGC 59.001 66.667 0.00 0.00 35.39 4.35
2937 3195 2.680370 GGCCCTGGTGGACCTAAGG 61.680 68.421 0.00 0.00 35.25 2.69
2938 3196 2.998949 GGCCCTGGTGGACCTAAG 59.001 66.667 0.00 0.00 35.25 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.