>input_sequence_60125
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----------------------------------------ATGGCTGGAATGCGTGAGATGGCGATATTCTACTCACAGG
AGCGCAGCTTCTTCCACCGGCTGGTGCGCGACCTCGGGCAGGAGAAGGAGCACATGAGGTGGGTGATCGCGCTCTGGCTC
TGGTTCGAGGCCGATGGGAACGACAAGTTCATGCGCCGCGCGGCCGCGCTCCCGGGCCCCGTCGTGCTGCGCTTCGTCGA
CGAGGCGCTGGCGTGCCTCGCCCGCCTCGCCGGCCGCGTGCTCGCCGGCGCCAGCACGCTCCTCCCCTGCACCAACGCGC
TCCTCAACAAGCCCATCGACGACGTCACCTACTTCGACGAGCACCGCGACAACATCATGCCCCGCGTCAAGTTACTGTAC
AAGACCGTCTGCCGCGTCGTCCTCGACGACGCCTGCGCCTCCGACAACGCCGTCTTCTTTCC---CAGCAGGAGCAGCAC
CGCCTCCGCGCCGCGCGCCATCGGCACTCCCGTGCTCGCCAGCGCCGCCTCCCCACCCCCACAGACGCCAACGACGCCGA
GGTTCGCCG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AC
ATGAACGCAATAGTGACGCCGAGGTTCTCCCAGCTGAACGCGATGGCGCCGCCGTGGGCCCCGATCCGGGTGGCGCCGCC
GCACCACCTCCAGCCCCAGCCCCAGCCCCAGCA------CCAGCACCAGCACCAGCAGCATCAGATGATGATCGTCGACC
GCCTTCCAGAGGAGTTCCGCTCGCTCTTCATCACCTTCTCCCGCGGCTACCCCATCGACAAGGACGACATCAGGGAGTTC
TTCAACTCGTAAGCTCATCGCGCCGCCACTACT-TATATATCATCAGCATATCTATCTCTGGTCAATATATACAACGCAC
GTACTTGCACGATGACCGTCATCATATATATGCATGCATGCATGCATGCATGCATGCATGCATGGATGCAGGCTGCACGG
GCGCCCGTGCGTGGAGGACGTGATGGTGGAGAGGGCGGCGCCGGGGCAGATGCCGGTGTACGGGAGGGTGGTGCTGCAGA
GCGCGGACATGATCCCGGTGCTGCTCGGGGGCGAGCCGACGGCCAAGTTCATCATCAAGGGCAGGCACCTCTGGGCCAGG
GTCTACGTGCCCTGCTCCAGGCACACCTTCCAAGCCTGA-----------------------------------------
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>chr1D_1_TraesCS1D01G221200
CGTGGCGTGAGGAGAAAGACCTGGGGGAGATGATGTAATTTCTAACTTCTTAGGGCTAACCTTTTCCAGCTGCATCGAGC
TTTTGCATTGTCGTGTTGGTAACCGAAGCTTATCCCATTTTTGGCAGTTTTACCTTTGCGTGAAACCAGGCGCAGTAAAC
AACAAGGCTCACATTGAACCAGCATCAGAAGAGACCAACGGTGGTTCATCTCACCGCTGAGCTGGATGCATGCGTTCATA
TGCGGCCGAGATCGAGGAGCCCCTCCCATGGACGGCGTGCGCTCGGCTGCTCGCCTCGCGTGCGACCGGCCTCCTTTCCA
CGTCCTCTGCAGCTTACCCGCAAGCCTTTTCCGGAGAGCCGCGACGAACTCGAGGCTACTGGATGTGTAAACCCAATGGA
GTTACTGGTCTTCACCGCGAGATTAGCGGAGGGGGGCTTCAGTTCGCCCCTGATCACCGCGCGCGCACCGGCAACCGGCG
GGTGAGGCGACCGATGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGTGAGGTAGTGGTGGCTAGGCGGCCATGGCTGGAATGCGTGAGATGGCGATATTCTACTCACAGG
AGCGCAGCTTCTTCCACCGGCTGGTGCGCGACCTCGGGCAGGAGAAGGAGCACATGAGGTGGGTGATCGCGCTCTGGCTC
TGGTTCGAGGCCGATGGGAACGACAAGTTCATGCGCCGCGCGGCCGCGCTCCCGGGCCCCGTCGTGCTGCGCTTCGTCGA
CGAGGCGCTGGCGTGCCTCGCCCGCCTCGCCGGCCGCGTGCTCGCCGGCGCCAGCACGCTCCTCCCCTGCACCAACGCGC
TCCTCAACAAGCCCATCGACGACGTCACCTACTTCGACGAGCACCGCGACAACATCATGCCCCGCGTCAAGTTACTGTAC
AAGACCGTCTGCCGCGTCGTCCTCGACGACGCCTGCGCCTCCGACAACGCCGTCTTCTTTCCCAGCAG---GAGCAGCAC
CGCCTCCGCGCCGCGCGCCATCGGCACTCCCGTGCTCGCCAGCGCCGCCTCCCCACCCCCACAGACGCCAACGACGCCGA
GGTTCGCCG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AC
ATGAACGCAATAGTGACGCCGAGGTTCTCCCAGCTGAACGCGATGGCGCCGCCGTGGGCCCCGATCCGGGTGGCGCCGCC
GCACCACCTCCAGCCCCAGCCCCAGCCCCAGCA------CCAGCACCAGCACCAGCAGCATCAGATGATGATCGTCGACC
GCCTTCCAGAGGAGTTCCGCTCGCTCTTCATCACCTTCTCCCGCGGCTACCCCATCGACAAGGACGACATCAGGGAGTTC
TTCAACTCGTAAGCTCATCGCGCCGCCACTACT-TATATATCATCAGCATATCTATCTCTGGTCAATATATACAACGCAC
GTACTTGCACGATGACCGTCATCATATATATGCATGCATGCATGCATGCATGCATGCATGCATGGATGCAGGCTGCACGG
GCGCCCGTGCGTGGAGGACGTGATGGTGGAGAGGGCGGCGCCGGGGCAGATGCCGGTGTACGGGAGGGTGGTGCTGCAGA
GCGCGGACATGATCCCGGTGCTGCTCGGGGGCGAGCCGACGGCCAAGTTCATCATCAAGGGCAGGCACCTCTGGGCCAGG
GTCTACGTGCCCTGCTCCAGGCACACCTTCCAAGCCTGAATGC----TCGATCCATCCATCCATCCATGCATGCAGCTAC
CTGGCCTACAATTAAGCTG----CGTGCATGGAGCTGGAGCTTGAAGATATGCCATGGCACAGTCAGTTACCCGGTTCAT
AT-----GCTACCTA---CTAC-TCCATCGATTGGTCCAGAGACTATGCTCGAGAGATGAGACAACCATCGATCGATATA
CATATGTGTGTCCAGTTTGTGCTTTGTGCTTGTCTTAATTATATCGGATATATGGAATAAATGTGTGTTTACTTCC-GTT
TGATACATGAAAGTATTTATATATGTTACTCTGGGGTATTATACTTGTTAGGCTGGTCATAGTGGGGAGTATCATATACT
AGTATCATGCATATGATACTAGTGTATGATACTACATTCATAGTGCATAGTAACATAGATTAGTACTCCCTCCGTCACAG
TTTAGAAGGCACAGTTAAATTTGCGTGCGTTTTCACAATAGACAAGGTTTAGGGCGCATTGCATTTATTTCTAGTAGCTA
ATTAGTACTCCGATATACTATTTTTATATGCATGCGTAGTGTGAATGCTATTTTTTAGCCCATCTCACAACCAATAGATA
ACCACCTAGGTCCAAGATAATTTTCAAGCGCGCCTTCTAAACCGTGACGGAGGGAGTATCATAGGTGGTCTCATTTATTG
CCATGCATGACACATAGTAGCATAACATTTATTATCTTACGGTATCTACCTATGTTACTATAATCATCTCTCTCTTCTTT
AATTGACTGCCCCATAAGCATGTTTGTGAGTCCCAAGAGCATGTTGCTACTTATGTTACCCCCACTATGGCCAGCCTTAG
GTCCACCAGGGCCTCCATAATGCCAAGCCCCTCAATGCTTCTTTTGTTTGATCAGCTGATCTCGATCAGGCCCTGGTTTG
AGATAGCGGGGATTATTTCCTGTTCCTGCCAGAATTCAACACTTCATTGCCTCTTTGGTTCAAAGGATTTTTATAGTAGG
ATTTTGGGAGGATTGAA
>chr1A_1
CGTGGCGTGAGGAGAAAGACCTGGGGAAGATGATGTAATTTCTAACTTGTTAGGGCTAACCTTTTCCAGCTGCATCGAGC
TTTTGCATTGTCGTTTTGGTAACCGAAGCTTATCCCATTTTTGGCAGTTTTACCTTTGCGTGAAACCAGGCGCAGTAAGC
AACAAGGCTCACATTGAACCAGCATCAGAAGAGACCAACGGTGGTTCATCTCGCCGCTGAGCTGGATGCATGCGTTCATA
TGCGGCCGAGATCGAGGAGCCCCTCCCATGGACGGCGTGCACCCGGCTGCTCGCCTCGCGTGCGACCGGCCTCCTTTCCA
CGTCCTCTGCAGCTTACCCGCAAGCCTTTTCCGGAGAGCCGCGACGAACTCGAGGCTACTGGACGTGTAGACAAGGTGGA
GTTACTGGTCTTCACCGCGAGATTAGCGGAGGGGGGCTTCAGTTCGCCCCTGATCACCGCGGGCGCACCGGCAACCGGCG
GGTGAGGCGAGCGATGCCGG-GCCGGGCTTTCCATGTGAAGGGTGCCGTGTGTACGCCGAGCCGTGCGCCCCTGCGCTGC
GTGCTCTCCCTTGCGCGCCCTGGCCTTGTCTCGTAGCCGGGGCGCGCAACAAACCTCTGTGGACGCACGCGCACGCGCGG
CGTGCCAGGGCACGGAGCTGGGCCTTTATCAACCCCACCTCGCCGTGCCATTGCCATCCGCCAGCGAGCGAGCGAGAGAG
AGAGAGACAGTGTGTTTGTGTGAGAGTGAGGGATCGAGC-----------------------------------------
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-----------------GAGGTAGTGGTGGCTAGGCGGCCATGGCTGGATTGCGTGAGATGGCGATATTCTACTCACAAG
AGCGCAGCTTCTTCCACAGGCTGGTGCGCGACCTCGGGCAGGAGAAGGAGCATATGAGGTGGGTGATCGCGCTCTGGCTC
TGGTTCGAGGCCGATGGGAACGACAAGTTCATGCGCCGCGCGGCCGCGCTTCCGGGCCCCGTCGTGCTGCGCTTCGTCGA
CGAGGCGCTGGCGTGCCTCGCCCGCCTCGCCGGCCGCGTGCTCCCCGGCGCCAGCACCCTCCTCCCCTGCACCAACGCGC
TCCTCAACAAGCCCATCGACGACGTCACCTACTTCGACGAGCACCGCGACAACATCATGCCCCGCGTCAAGTTACTGTAC
AAGACCGTCTGCCGCGTCGTCCTCGACGACGCCTGCGCCTCCGACGACGCCGTCTTCTTTCC---CAG---GAGCAGCGC
CGCCTCCGCGCCGCGCGCCATCGGCACTCCCGTGCTCGCCAGCGCCGTCTCCCCACCCCCCCAGACGCCAACGACGCCGA
GGTTCGCCG-----------------------------------------------------------------------
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------------------------------------------------------------------------------AC
CTGAACGCAATAGTGACGCCGAGGTTCTCCCAGCTGAACGCGATGGCGCCGCCGTGGGCCCCGATCCGGCTGGCGCAGCC
GTA------------------CCAGCCCCAGCCCCCACCCCAGCACCAGCACCAGCAGCATCAGATGATGATCATCGACC
GCCTTCCAGAGGAGTTCCGCTCGCTCTTCATCACCTTCTCCCGCGGCTACCCCATCGACAAGGACGACATCAGGGACTTC
TTCAACTCGTAAGCTCATCGCGCCGCCACTACT--ATATATCATCAGCATATCTATCTCTGGTCAATATATATACAA---
--------ACGATGACCGTCATCATATATATGCGTGCATGCATGCATGCATGG----ATGGATGGATGCAGGCTGCACGG
GCGCCCGTGCGTGGAGGACGTGATGGTGGAGAGGGCGGCGCCGGGGCAGATGCCGGTGTACGGGAGGGTGGTGCTGCAGA
GCGCGGACATGATCCCGGCGCTGCTCGGGGGCGAGCCGACGGCCAAGTTCATCATCAAGGGCAGGCACCTCTGGGCCAGG
GTCTACGTGCCCTGCTCCAGGAACACCTTCCAAGCCTGAATGC----TCGATCC----GTCCATCCATGCATCCAGCTAC
CTGGCCTACAATTAAGCTGCATGCGTGCATGGAGCTGGAGCTTCAAGATGTGCCATGGCACAGTCAGTTACCCGGTTCAT
AT-----GCTACCTACTACTAC-TCGATCGATTGGTCCAGAGACTATGCTCGAGAGATGAGACAACCATCGATCGATATA
CATATGTGTGTCCAGTTTGTGCTTTGTGCTTGTCTTAATTATATCGGATATGTGGAATAAATGTGTGTTTACTTCC-GTT
TGATACATGAAAGTATTTATGTTACTCTGT------TATTATGCTTG---------------------------------
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----------------------------------------------------------------------------TTAG
GTCCACCAGGGCCTCCATAATGCCAAGCCCGTCAATGCTTCTTTTGTTTGATCAGCTGATCTCGATCAGGCCCTGGTTTG
AGATAGCGGGGTTTATTTCCTGTTCCTGCCAGAATTCAACACTTCATTGCCTCTTTGGTTCAAAGGATTTTTATAGTAGG
ATTTTGGGAGGATTGAA
>chr1B_1
CGTGGCGTGAGGAGAAAGACCTGGGGGAGATGATGTAATTTCGAACTTCTTAGGGCTAACCTTTTCCAGCTGCATCAAGC
TTTTGCATTGTCGTTTTGGTAACCGAAGCTTATCCCATTTTTGGCAGTTTTACCTTTGCGTGAAACCAGGCGCAGTAAAC
AACAAGGCTCACATTGAACCATCATCAGAAGAGACCAACGGTGGTTCATCTCGCCGCTGAGCTGGATGCATGCGTTCATA
TGCAGCCGAGATCGAGGAGCCCCTCCCATGGACGGTGTGCGCTCGGCTGCTCGCCTCGCGTGCGACCGGCCTCCTTTCCA
CGTCCTCTGCAGCTTACCCGCAAGCCTTTTCCGGAGAGCCGCGACGAACTCGAGGCTACTGGGCGTGTAGACAAGGTGGA
GTTACTGGTCTTCACCGCGAGATTAGCGGAGGGGGGCTTCAGTTCGCCCCTGATCACCGCGCGCGCACCGGCAACCGGCG
GGTGAGGCTGAGGCGACCCATGCCGGGCTTTCCATGTGAGGGGTGCCGTGTGTGCGCCGAGCCGTGCGCCCCTGCGCTGC
GTGCTCTCCCTTGTGCGCCCAGGCCTTGTCTCGTAGCCGGGGCGCGCAACAAACCTCTGTGGACGCACGTGCACGCGCGG
CGTGCCATAGCACGGAGCTGGGCCTTTATCAACCCCGCCTCGCCGTGCCATTGCCATCCGCCAGCGAG----CGAGAGAG
AGAGAGACAGTGTGTTTGTGTGAGAGTGAGGGGTCGAGC-----------------------------------------
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-----------------GAGGTAGTGGT--------GGCCATGGCTGGAATGCGTGAGATGGCGATATTCTACTCACAGG
AGCGCAGCTTATTCCACCGGCTGGTGCGCGACCTCGGGCAGGAGAAGGAGCATATGAGGTGGGTGATCGCGCTCTGGCTC
TGGTTCGAGGCCGATGGGAACGACAAATTCATGCGCCGCGCGGCCGCGCTCCCGGGCCCCGTCGTGCTGCGCTTCGTCGA
CGAGGCGCTGGCGTGCCTCGCCCGCCTCGCCGGCCGCGTGCTCGCCGGCGCCAGCACGCTCCTCCCCTGCACCAACGCGC
TCCTCAACAAGCCCATCGACGACGTCACCTACTTCGACGAGCACCGCGACAACATCATGCCCCGCGTCAAGTTACTGTAC
AAGACCGTCTGCCGCGTCGTCCTCGACGACGCCTGCGCCTCCGACAACGCCGTCTTCTTTCC---CAGCAAGAGCAGCAC
CGCCTCCGCGCCGCGCGCCATCGGCACCCCCGTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAC
CTGAACGCAATAGTGACGCCGAGGTTCTCCCAGCTGAACGCGATGGCGCCGCCGTGGGCCCCGATCTGGCTGGCGCAGCC
GTA------------------CCAGCCCCAGCC------CCAGCACCAGCACCAGCAGCATCAGATGATGATCGTCGACC
GCCTTCCAGAGGAGTTCCGCTCGCTCTTCATC--------------------------------CGACATCAGGGAGTTC
TTCAACTCGTAAGCT---CGCGCCGCCACTACTATATATATCATCAGCATATCTATCTCTGGTCAATATATATACAA---
--------ACGATGACCGTCATCATA------CATGCATGCATGCATGCATGG----ATGGATGGATGCAGGCTGCAGGG
GCGCCCGTGCGTGGAGGACGTGATGGTGGAGAGGGCGGCGCCTGGGCAGATGCCGGTGTACGGGAGGGTGGTGCTGCAGA
GCCCGGACATGATCCCGGCGCTGCTCGGGGGCGAGCCGACGGCCAAGTTCATCATCAAGGGCAGGCACCTCTGGGCCAGG
GTGTACGTGCCCTGCTCCAGGCACACCTTCCAAGCCTGAATGCTCGATCCATCC----ATCCATCCATGCATCCAGCTAC
CTGGCCTACAATTAAGCTGCATGCGTGCATGGAGCTGGAGCTTGAAGATATGCCATGGCACAGTCAGTTACCCGGTTCAT
ATCATATGCTACCTACTGCTCGATCGATCGATTGGTCCAGAGACTATGCTCGAGAGATGAGACAACCATCGATCGATATA
CATATGTGTGTCCAGTTTGTGCTTTGTGCTTGTCTTAATTATATCGGATATATGGAATAAATGTGTGTTTACTTCCCGTT
TGATACATGAAAGTATTTATGCTACTCTGT------TATTATACTTG---------------------------------
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----------------------------------------------------------------------------TTAG
GTCCACCAGGGCCTCCATAATGCCAAGCCCCTCAATGCTTCTTTTGTTTGATCAGCTGATCTCGATCAGGCCCTGGTTTG
AGATAGCGGGGATTATTTCCTGTTCCTGCCAGAATTCAACACTTCATTGCCTCTTTGGTTCAAAGGATTTTTATAGCAGG
CTTTTTGGAGGATT---
>SNPs
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--------------S-----------------------------------------------------------------
----------------------------------------------------S---------------------------
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---------------------------------------------------------------S-----S--SSSS----
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----------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS---------------------------------------------------------------
----------------------------------------------------S---------------------------
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--------------------------------------------------------------SSS---------------
-----------------------------------------------S------------S-------------------
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S--------------------------------------------------------------------S------S---
-S-SSSSSSSSSSSSSSSSSS-----------S-----------------------------------------------
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------------------------------------------------------------------------S-SSSSSS
SSSSSSSS--------------------------------------------SSSSS---S-------------------
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------------------S-------------------------------------------------------------
------------------------------------------------------SSSS--------------S-------
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-------------------------S------------------------------------------------------
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--------------------S-SSS-SSS-SSSSSS-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
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>forward_384
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--------------------------------------------CGAACTCGAGGCTACTGGAT----------------
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>reverse_2077
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----------------------------------------------------------------------------GCAC
GTACTTGCACGATGAC----------------------------------------------------------------
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>forward_1425
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---------------------------------------------AACGCCGTCTTCTTTCCCAG---------------
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>reverse_3181
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------------------------------------------------------------CCCACTATGGCCAGCCTTAG
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-----------------
