Multiple sequence alignment - TraesCS1D01G215000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G215000 chr1D 100.000 4772 0 0 1 4772 300061357 300066128 0.000000e+00 8813
1 TraesCS1D01G215000 chr1A 96.717 3229 94 6 895 4115 374566573 374569797 0.000000e+00 5365
2 TraesCS1D01G215000 chr1A 94.097 559 30 3 4214 4772 374569797 374570352 0.000000e+00 846
3 TraesCS1D01G215000 chr1A 96.203 395 14 1 1 394 374523316 374523710 0.000000e+00 645
4 TraesCS1D01G215000 chr1A 90.769 260 23 1 392 651 374534646 374534904 3.540000e-91 346
5 TraesCS1D01G215000 chr1A 91.803 122 6 3 782 903 374535185 374535302 2.950000e-37 167
6 TraesCS1D01G215000 chr1A 88.971 136 10 4 649 783 374534977 374535108 3.820000e-36 163
7 TraesCS1D01G215000 chr1B 97.650 3107 64 5 984 4082 405181461 405184566 0.000000e+00 5325
8 TraesCS1D01G215000 chr1B 91.558 924 47 10 3860 4772 405184571 405185474 0.000000e+00 1245
9 TraesCS1D01G215000 chr1B 88.818 787 57 17 1 783 405179334 405180093 0.000000e+00 937
10 TraesCS1D01G215000 chr1B 91.257 183 6 4 817 994 405180183 405180360 1.720000e-59 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G215000 chr1D 300061357 300066128 4771 False 8813.000000 8813 100.000000 1 4772 1 chr1D.!!$F1 4771
1 TraesCS1D01G215000 chr1A 374566573 374570352 3779 False 3105.500000 5365 95.407000 895 4772 2 chr1A.!!$F3 3877
2 TraesCS1D01G215000 chr1A 374534646 374535302 656 False 225.333333 346 90.514333 392 903 3 chr1A.!!$F2 511
3 TraesCS1D01G215000 chr1B 405179334 405185474 6140 False 1937.000000 5325 92.320750 1 4772 4 chr1B.!!$F1 4771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 334 0.103208 GCGAGGACGGACATCTTGAT 59.897 55.000 0.00 0.00 40.15 2.57 F
754 834 1.029681 GTTTTCAAGCCGGTGACCTT 58.970 50.000 1.90 0.00 0.00 3.50 F
763 843 1.614850 GCCGGTGACCTTCCCAAAATA 60.615 52.381 1.90 0.00 0.00 1.40 F
2835 4111 1.677637 TTGAAACAACGGTTGGGCCC 61.678 55.000 23.51 17.59 37.30 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2217 3493 1.656652 CTAGGACGGCACCAAGAATG 58.343 55.000 0.00 0.0 0.00 2.67 R
2703 3979 1.902508 TCAGACTTGCTTCCCCTACTG 59.097 52.381 0.00 0.0 0.00 2.74 R
2958 4234 0.968901 TAATGAGCTCCACGACCCGT 60.969 55.000 12.15 0.0 42.36 5.28 R
4631 6168 0.032678 ACACAGACTGACCTCGCAAG 59.967 55.000 10.08 0.0 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.210873 CGAATAACTTACATTTAGGAGGAGCT 58.789 38.462 0.00 0.00 0.00 4.09
54 56 3.895232 TCTAGATGGTGGTCTTGAAGC 57.105 47.619 0.00 0.00 29.25 3.86
101 103 1.550065 CACGATAAGCAGAGTCCACG 58.450 55.000 0.00 0.00 0.00 4.94
102 104 1.132453 CACGATAAGCAGAGTCCACGA 59.868 52.381 0.00 0.00 0.00 4.35
133 135 0.809385 GAGGTCGTCATCTTCCACGA 59.191 55.000 0.00 0.00 42.61 4.35
186 189 1.142060 AGTTGGGACGTGAATCACCAA 59.858 47.619 7.91 3.40 38.76 3.67
212 215 8.175925 TGTTAAAAGAATTCATGGATGTGTCA 57.824 30.769 8.44 0.00 0.00 3.58
233 236 6.885918 TGTCATAACATGATCCAGTTCATTGT 59.114 34.615 0.00 0.00 42.04 2.71
235 238 7.699391 GTCATAACATGATCCAGTTCATTGTTG 59.301 37.037 0.00 0.00 42.04 3.33
259 262 2.862541 TGAACCTGGGACATGAAACAG 58.137 47.619 0.00 4.02 38.20 3.16
262 265 1.308069 CCTGGGACATGAAACAGCCG 61.308 60.000 0.00 0.00 38.20 5.52
269 272 1.081892 CATGAAACAGCCGAGTCCAG 58.918 55.000 0.00 0.00 0.00 3.86
270 273 0.976641 ATGAAACAGCCGAGTCCAGA 59.023 50.000 0.00 0.00 0.00 3.86
271 274 0.318441 TGAAACAGCCGAGTCCAGAG 59.682 55.000 0.00 0.00 0.00 3.35
274 277 1.548357 AACAGCCGAGTCCAGAGCAT 61.548 55.000 0.00 0.00 0.00 3.79
275 278 1.227205 CAGCCGAGTCCAGAGCATC 60.227 63.158 0.00 0.00 0.00 3.91
276 279 1.683707 AGCCGAGTCCAGAGCATCA 60.684 57.895 0.00 0.00 37.82 3.07
277 280 1.219124 GCCGAGTCCAGAGCATCAA 59.781 57.895 0.00 0.00 37.82 2.57
278 281 0.391661 GCCGAGTCCAGAGCATCAAA 60.392 55.000 0.00 0.00 37.82 2.69
279 282 1.649664 CCGAGTCCAGAGCATCAAAG 58.350 55.000 0.00 0.00 37.82 2.77
293 296 3.196254 GCATCAAAGTCCATTCAACCCAT 59.804 43.478 0.00 0.00 0.00 4.00
308 311 2.707849 CCATGGCCAACAGAGCTGC 61.708 63.158 10.96 0.00 0.00 5.25
321 324 3.793144 GCTGCAAAGCGAGGACGG 61.793 66.667 0.00 0.00 40.15 4.79
326 329 1.696832 GCAAAGCGAGGACGGACATC 61.697 60.000 0.00 0.00 40.15 3.06
331 334 0.103208 GCGAGGACGGACATCTTGAT 59.897 55.000 0.00 0.00 40.15 2.57
382 385 4.102210 GGTGGGATGAAAGATGATCTCTCA 59.898 45.833 0.29 0.29 31.03 3.27
420 423 8.752254 GTTTAACACCAAAGACTTTATTGAAGC 58.248 33.333 12.67 0.48 39.04 3.86
421 424 5.453567 ACACCAAAGACTTTATTGAAGCC 57.546 39.130 12.67 0.00 39.04 4.35
674 753 4.214310 TGGGAAAGAAAGAAAGACATGCA 58.786 39.130 0.00 0.00 0.00 3.96
680 759 3.056322 AGAAAGAAAGACATGCATTGCCC 60.056 43.478 6.12 0.00 0.00 5.36
754 834 1.029681 GTTTTCAAGCCGGTGACCTT 58.970 50.000 1.90 0.00 0.00 3.50
763 843 1.614850 GCCGGTGACCTTCCCAAAATA 60.615 52.381 1.90 0.00 0.00 1.40
917 1085 4.063689 TCGCTATTCTAACTAGGTCCTCG 58.936 47.826 0.00 0.00 0.00 4.63
1800 3076 2.555757 CAAGATATTTGCTAGGCTGGCC 59.444 50.000 20.71 3.00 0.00 5.36
1821 3097 3.522731 CTGGAGTCGCGCCTAGCT 61.523 66.667 0.00 0.00 45.59 3.32
1863 3139 1.967535 CCAGCTCCTCACTCGTTCA 59.032 57.895 0.00 0.00 0.00 3.18
2217 3493 2.887152 AGACCCAGAGTTTGCAAATGAC 59.113 45.455 16.21 9.76 0.00 3.06
2226 3502 5.069516 AGAGTTTGCAAATGACATTCTTGGT 59.930 36.000 16.21 0.00 0.00 3.67
2433 3709 4.620332 CGATCTCTCCTAATTGATCCTGCC 60.620 50.000 0.00 0.00 33.72 4.85
2703 3979 5.466728 TGAGTTAGCTGTTGATCAAACTGTC 59.533 40.000 10.35 7.67 39.70 3.51
2835 4111 1.677637 TTGAAACAACGGTTGGGCCC 61.678 55.000 23.51 17.59 37.30 5.80
2874 4150 3.151022 GAGGTCCTGGAGAGGGCG 61.151 72.222 0.00 0.00 46.14 6.13
2958 4234 7.112122 AGGTCAGTGATCATAACAAGCATAAA 58.888 34.615 6.10 0.00 0.00 1.40
3228 4504 3.196463 TCTTTTTGAGCACCGTAAACGA 58.804 40.909 3.65 0.00 43.02 3.85
3593 4869 4.895961 AGTTCTAGGACAAGTAAGCAACC 58.104 43.478 3.42 0.00 0.00 3.77
3626 4902 5.753721 AAAGAGAAGAGCACAATACCTCT 57.246 39.130 0.00 0.00 40.00 3.69
3699 4975 3.438781 GGCATCGTCAAGGAAAACATACA 59.561 43.478 0.00 0.00 0.00 2.29
3832 5110 8.094798 ACGAAATACAAGTTGATGTGTTGTAT 57.905 30.769 10.54 1.93 45.17 2.29
3886 5164 4.265073 ACATGGATGTTAACCTCTTCTGC 58.735 43.478 10.23 0.00 37.90 4.26
3925 5203 6.677076 AGGTCTTTGTATACTATCCCAAAGGT 59.323 38.462 4.17 0.00 42.41 3.50
3961 5239 6.880529 AGATGCCCATTTAAGAAAATTTGGTG 59.119 34.615 0.00 0.00 32.87 4.17
3988 5266 4.326504 AAGTGCCAGTGAAAATCAAAGG 57.673 40.909 0.00 0.00 0.00 3.11
3990 5268 3.706086 AGTGCCAGTGAAAATCAAAGGTT 59.294 39.130 0.00 0.00 0.00 3.50
4037 5321 6.837471 AAGAGTATTTTGACTAGAGACGGT 57.163 37.500 0.00 0.00 0.00 4.83
4049 5565 8.976986 TGACTAGAGACGGTTAAATAAAAGAC 57.023 34.615 0.00 0.00 0.00 3.01
4051 5567 7.031975 ACTAGAGACGGTTAAATAAAAGACGG 58.968 38.462 0.00 0.00 0.00 4.79
4052 5568 6.029346 AGAGACGGTTAAATAAAAGACGGA 57.971 37.500 0.00 0.00 0.00 4.69
4053 5569 6.458210 AGAGACGGTTAAATAAAAGACGGAA 58.542 36.000 0.00 0.00 0.00 4.30
4054 5570 6.589139 AGAGACGGTTAAATAAAAGACGGAAG 59.411 38.462 0.00 0.00 0.00 3.46
4117 5633 5.245075 AGCTATAGACCCTCTATTTCTGCAC 59.755 44.000 3.21 0.00 40.06 4.57
4118 5634 5.245075 GCTATAGACCCTCTATTTCTGCACT 59.755 44.000 3.21 0.00 40.06 4.40
4153 5669 9.415008 GCTAGATATATCTGGAGTTCTGGATTA 57.585 37.037 25.58 1.86 37.57 1.75
4192 5708 8.500773 TGTTTTGGTATTGATTTTCGAGTAGAC 58.499 33.333 0.00 0.00 0.00 2.59
4260 5776 3.287312 TGCACAGCTAATTTCTGTTGC 57.713 42.857 17.50 17.50 42.38 4.17
4330 5846 4.018050 AGTTCCCTTTTGATCCTACAGCAT 60.018 41.667 0.00 0.00 0.00 3.79
4368 5884 0.038166 TTGCTGGCTGACCTTTAGGG 59.962 55.000 0.10 0.00 40.27 3.53
4369 5885 1.750780 GCTGGCTGACCTTTAGGGC 60.751 63.158 0.10 0.00 45.93 5.19
4378 5894 3.825143 GACCTTTAGGGCGGTTATACA 57.175 47.619 0.10 0.00 40.27 2.29
4379 5895 4.347360 GACCTTTAGGGCGGTTATACAT 57.653 45.455 0.10 0.00 40.27 2.29
4380 5896 5.473066 GACCTTTAGGGCGGTTATACATA 57.527 43.478 0.10 0.00 40.27 2.29
4381 5897 5.476614 GACCTTTAGGGCGGTTATACATAG 58.523 45.833 0.10 0.00 40.27 2.23
4382 5898 5.149976 ACCTTTAGGGCGGTTATACATAGA 58.850 41.667 0.10 0.00 40.27 1.98
4383 5899 5.011431 ACCTTTAGGGCGGTTATACATAGAC 59.989 44.000 0.10 0.00 40.27 2.59
4514 6046 1.493022 AGGTGGCTGTGAACTTGGTAA 59.507 47.619 0.00 0.00 0.00 2.85
4536 6073 5.568620 AGTTTTTGATGGTAGGACTGAGT 57.431 39.130 0.00 0.00 0.00 3.41
4631 6168 1.065126 AGCTGTAGGATGGTTTGGAGC 60.065 52.381 0.00 0.00 0.00 4.70
4732 6269 2.758736 TGGAAATGAAAATTGGGGCG 57.241 45.000 0.00 0.00 0.00 6.13
4764 6301 5.278120 CCTTGGGTCGAAAAAGAATACGTTT 60.278 40.000 0.00 0.00 0.00 3.60
4765 6302 5.098218 TGGGTCGAAAAAGAATACGTTTG 57.902 39.130 0.00 0.00 0.00 2.93
4766 6303 4.815308 TGGGTCGAAAAAGAATACGTTTGA 59.185 37.500 0.00 0.00 0.00 2.69
4767 6304 5.470777 TGGGTCGAAAAAGAATACGTTTGAT 59.529 36.000 0.00 0.00 0.00 2.57
4768 6305 5.793457 GGGTCGAAAAAGAATACGTTTGATG 59.207 40.000 0.00 0.00 0.00 3.07
4769 6306 6.368213 GGTCGAAAAAGAATACGTTTGATGT 58.632 36.000 0.00 0.00 0.00 3.06
4770 6307 6.302313 GGTCGAAAAAGAATACGTTTGATGTG 59.698 38.462 0.00 0.00 0.00 3.21
4771 6308 6.849305 GTCGAAAAAGAATACGTTTGATGTGT 59.151 34.615 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 5.163216 CCATCTAGAAATTTGAGCTCCTCCT 60.163 44.000 12.15 2.62 0.00 3.69
27 28 6.778821 TCAAGACCACCATCTAGAAATTTGA 58.221 36.000 0.00 0.00 0.00 2.69
85 87 3.512033 ACTTCGTGGACTCTGCTTATC 57.488 47.619 0.00 0.00 0.00 1.75
91 93 0.798771 GCGCTACTTCGTGGACTCTG 60.799 60.000 0.00 0.00 0.00 3.35
101 103 3.427598 GACCTCCGGGCGCTACTTC 62.428 68.421 7.64 0.00 35.63 3.01
102 104 3.459063 GACCTCCGGGCGCTACTT 61.459 66.667 7.64 0.00 35.63 2.24
114 116 0.809385 TCGTGGAAGATGACGACCTC 59.191 55.000 0.00 0.00 39.59 3.85
139 141 1.068610 CCACACTAACCAATGGCAACG 60.069 52.381 0.00 0.00 42.51 4.10
145 147 4.821805 ACTTCAACTCCACACTAACCAATG 59.178 41.667 0.00 0.00 0.00 2.82
146 148 5.048846 ACTTCAACTCCACACTAACCAAT 57.951 39.130 0.00 0.00 0.00 3.16
186 189 8.805175 TGACACATCCATGAATTCTTTTAACAT 58.195 29.630 7.05 0.00 0.00 2.71
212 215 7.613022 ACTCAACAATGAACTGGATCATGTTAT 59.387 33.333 0.00 0.00 39.90 1.89
233 236 2.441375 TCATGTCCCAGGTTCAACTCAA 59.559 45.455 0.00 0.00 0.00 3.02
235 238 2.859165 TCATGTCCCAGGTTCAACTC 57.141 50.000 0.00 0.00 0.00 3.01
259 262 0.391661 TTTGATGCTCTGGACTCGGC 60.392 55.000 0.00 0.00 0.00 5.54
262 265 2.027745 TGGACTTTGATGCTCTGGACTC 60.028 50.000 0.00 0.00 0.00 3.36
269 272 3.119352 GGGTTGAATGGACTTTGATGCTC 60.119 47.826 0.00 0.00 0.00 4.26
270 273 2.827921 GGGTTGAATGGACTTTGATGCT 59.172 45.455 0.00 0.00 0.00 3.79
271 274 2.562298 TGGGTTGAATGGACTTTGATGC 59.438 45.455 0.00 0.00 0.00 3.91
274 277 3.164268 CCATGGGTTGAATGGACTTTGA 58.836 45.455 2.85 0.00 46.44 2.69
275 278 2.354003 GCCATGGGTTGAATGGACTTTG 60.354 50.000 15.13 0.00 46.44 2.77
276 279 1.901833 GCCATGGGTTGAATGGACTTT 59.098 47.619 15.13 0.00 46.44 2.66
277 280 1.560505 GCCATGGGTTGAATGGACTT 58.439 50.000 15.13 0.00 46.44 3.01
278 281 3.288099 GCCATGGGTTGAATGGACT 57.712 52.632 15.13 0.00 46.44 3.85
279 282 2.201927 GGCCATGGGTTGAATGGAC 58.798 57.895 15.13 0.00 46.44 4.02
293 296 1.455402 TTTGCAGCTCTGTTGGCCA 60.455 52.632 0.00 0.00 0.00 5.36
308 311 0.108615 AGATGTCCGTCCTCGCTTTG 60.109 55.000 0.00 0.00 35.54 2.77
326 329 3.191371 GGTTGGGAGTGCTTAACATCAAG 59.809 47.826 5.15 0.00 0.00 3.02
331 334 1.817740 GCTGGTTGGGAGTGCTTAACA 60.818 52.381 5.15 0.00 0.00 2.41
398 401 5.842907 GGCTTCAATAAAGTCTTTGGTGTT 58.157 37.500 8.14 0.00 36.62 3.32
420 423 1.304464 GGGCCTTTCTTGGGACAGG 60.304 63.158 0.84 0.00 42.39 4.00
421 424 0.322906 GAGGGCCTTTCTTGGGACAG 60.323 60.000 7.89 0.00 42.39 3.51
586 589 8.918202 AAGTATCAACTTTCAACACCTTGATA 57.082 30.769 0.00 0.00 43.60 2.15
608 611 1.760613 TCTGTCAGACGACCCAAAAGT 59.239 47.619 0.00 0.00 41.85 2.66
616 619 4.286910 GCTTCATCTATCTGTCAGACGAC 58.713 47.826 4.21 0.00 42.93 4.34
619 622 3.386078 TGGGCTTCATCTATCTGTCAGAC 59.614 47.826 4.21 0.00 0.00 3.51
621 624 4.412796 TTGGGCTTCATCTATCTGTCAG 57.587 45.455 0.00 0.00 0.00 3.51
633 636 5.867903 CCCATGTAATATTTTGGGCTTCA 57.132 39.130 14.43 0.00 42.23 3.02
660 739 2.901839 AGGGCAATGCATGTCTTTCTTT 59.098 40.909 7.79 0.00 32.85 2.52
680 759 7.230108 ACAATGACCTTAATCTTGATGGCATAG 59.770 37.037 0.00 0.00 0.00 2.23
754 834 7.402054 ACGATAGATGCCATAATATTTTGGGA 58.598 34.615 21.89 20.36 37.36 4.37
763 843 7.611770 TGCTAGTAAACGATAGATGCCATAAT 58.388 34.615 0.00 0.00 41.38 1.28
875 1043 3.310774 CGAAATAGCCACCATGAGTCAAG 59.689 47.826 0.00 0.00 0.00 3.02
917 1085 1.324736 GGTCGATCTCATTGCAACGAC 59.675 52.381 22.53 22.53 45.64 4.34
1074 2350 2.885861 CGGAGGGACTTGACGAGG 59.114 66.667 0.00 0.00 41.55 4.63
1659 2935 1.739562 CAGCTCACAGAAGGCGGAC 60.740 63.158 0.00 0.00 0.00 4.79
1821 3097 3.496711 GGATCAACAATCCGCGCA 58.503 55.556 8.75 0.00 44.61 6.09
2217 3493 1.656652 CTAGGACGGCACCAAGAATG 58.343 55.000 0.00 0.00 0.00 2.67
2433 3709 2.800250 AGGAGATTGTTCCCAAGCAAG 58.200 47.619 0.00 0.00 39.44 4.01
2703 3979 1.902508 TCAGACTTGCTTCCCCTACTG 59.097 52.381 0.00 0.00 0.00 2.74
2958 4234 0.968901 TAATGAGCTCCACGACCCGT 60.969 55.000 12.15 0.00 42.36 5.28
3593 4869 5.974751 GTGCTCTTCTCTTTAGTAAGATCGG 59.025 44.000 0.00 0.00 39.58 4.18
3626 4902 4.021456 TCGGCTCTTTCTTATCACTGTCAA 60.021 41.667 0.00 0.00 0.00 3.18
3699 4975 5.632118 TGAGTACTAGGTCTTTCTCTGTGT 58.368 41.667 0.00 0.00 0.00 3.72
3832 5110 7.345422 TGTTCTTCCTCATTCAAATGAACAA 57.655 32.000 6.85 2.51 44.20 2.83
3961 5239 2.798976 TTTCACTGGCACTTTCATGC 57.201 45.000 0.00 0.00 45.34 4.06
4012 5296 8.345724 ACCGTCTCTAGTCAAAATACTCTTTA 57.654 34.615 0.00 0.00 0.00 1.85
4049 5565 6.567687 ACATCTATCAGACTATCACTTCCG 57.432 41.667 0.00 0.00 0.00 4.30
4051 5567 9.593134 AACAAACATCTATCAGACTATCACTTC 57.407 33.333 0.00 0.00 0.00 3.01
4052 5568 9.950496 AAACAAACATCTATCAGACTATCACTT 57.050 29.630 0.00 0.00 0.00 3.16
4053 5569 9.950496 AAAACAAACATCTATCAGACTATCACT 57.050 29.630 0.00 0.00 0.00 3.41
4054 5570 9.979270 CAAAACAAACATCTATCAGACTATCAC 57.021 33.333 0.00 0.00 0.00 3.06
4055 5571 9.725019 ACAAAACAAACATCTATCAGACTATCA 57.275 29.630 0.00 0.00 0.00 2.15
4059 5575 9.003658 CCTAACAAAACAAACATCTATCAGACT 57.996 33.333 0.00 0.00 0.00 3.24
4060 5576 8.999431 TCCTAACAAAACAAACATCTATCAGAC 58.001 33.333 0.00 0.00 0.00 3.51
4061 5577 9.567776 TTCCTAACAAAACAAACATCTATCAGA 57.432 29.630 0.00 0.00 0.00 3.27
4091 5607 6.327626 TGCAGAAATAGAGGGTCTATAGCTTT 59.672 38.462 0.00 0.00 38.66 3.51
4118 5634 9.760926 ACTCCAGATATATCTAGCAATAGAACA 57.239 33.333 14.92 0.00 34.85 3.18
4153 5669 8.855110 TCAATACCAAAACACACATTTCACTAT 58.145 29.630 0.00 0.00 0.00 2.12
4330 5846 7.362920 GCCAGCAAAAATCCTGAGAAACTATAA 60.363 37.037 0.00 0.00 0.00 0.98
4368 5884 4.443394 CAGGTTTCGTCTATGTATAACCGC 59.557 45.833 0.00 0.00 39.88 5.68
4369 5885 4.443394 GCAGGTTTCGTCTATGTATAACCG 59.557 45.833 0.00 0.00 39.88 4.44
4370 5886 5.353938 TGCAGGTTTCGTCTATGTATAACC 58.646 41.667 0.00 0.00 36.22 2.85
4371 5887 6.897259 TTGCAGGTTTCGTCTATGTATAAC 57.103 37.500 0.00 0.00 0.00 1.89
4372 5888 7.065324 CCTTTTGCAGGTTTCGTCTATGTATAA 59.935 37.037 0.00 0.00 37.99 0.98
4373 5889 6.537301 CCTTTTGCAGGTTTCGTCTATGTATA 59.463 38.462 0.00 0.00 37.99 1.47
4374 5890 5.354234 CCTTTTGCAGGTTTCGTCTATGTAT 59.646 40.000 0.00 0.00 37.99 2.29
4375 5891 4.693566 CCTTTTGCAGGTTTCGTCTATGTA 59.306 41.667 0.00 0.00 37.99 2.29
4376 5892 3.502211 CCTTTTGCAGGTTTCGTCTATGT 59.498 43.478 0.00 0.00 37.99 2.29
4377 5893 3.670627 GCCTTTTGCAGGTTTCGTCTATG 60.671 47.826 0.00 0.00 46.07 2.23
4378 5894 2.488153 GCCTTTTGCAGGTTTCGTCTAT 59.512 45.455 0.00 0.00 46.07 1.98
4379 5895 1.877443 GCCTTTTGCAGGTTTCGTCTA 59.123 47.619 0.00 0.00 46.07 2.59
4380 5896 0.668535 GCCTTTTGCAGGTTTCGTCT 59.331 50.000 0.00 0.00 46.07 4.18
4381 5897 0.660300 CGCCTTTTGCAGGTTTCGTC 60.660 55.000 0.00 0.00 46.07 4.20
4382 5898 1.358759 CGCCTTTTGCAGGTTTCGT 59.641 52.632 0.00 0.00 46.07 3.85
4383 5899 0.934436 CACGCCTTTTGCAGGTTTCG 60.934 55.000 0.00 0.00 46.07 3.46
4401 5933 3.192799 TTTTTGCCCCTTGTCGTCA 57.807 47.368 0.00 0.00 0.00 4.35
4421 5953 3.024547 TCAACCGCTACTAGCTGAAGAT 58.975 45.455 6.49 0.00 39.60 2.40
4422 5954 2.443416 TCAACCGCTACTAGCTGAAGA 58.557 47.619 6.49 1.70 39.60 2.87
4514 6046 5.568620 ACTCAGTCCTACCATCAAAAACT 57.431 39.130 0.00 0.00 0.00 2.66
4536 6073 5.710099 AGACCTCAAACAGAACAAAACAGAA 59.290 36.000 0.00 0.00 0.00 3.02
4631 6168 0.032678 ACACAGACTGACCTCGCAAG 59.967 55.000 10.08 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.