>input_sequence_28109
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-----------------------------------ATGGCTTCCGCCCCGTCGGCTCCGTCGACGGCGCCGTCACTGGTG
GACACCCTCTTCCAGCGCTCGCTGGACGACCTCGTCAAGTCCCTCCGCGCCGACCCTTCAGCCGCCGGCGAGTCGCTGGC
CGTCGCCCGCGCCCTCTCCGAGATCCACCGTGAGATCCGCGCCCCGGACGCGGCGACCAAGGCCGTCGCGCTCCAGAAGT
TCACCTACCTCTCCTCCCTCCACTTCGTCCCCGTCGCCTCCCACCCGCTCGCGTTCCCCGCCATCGAGCTCCTCGCCTCG
CCGCACCTCCCGCACAAGCGCCTCGCCTACCTCGCCGCCTCGCTGTCGCTGCACCCCGCCTCGCTCTCCCTCCTCCCGCT
CGCCACCCACCAGATCCACAAGGACCTCTCTCCTTCCACCTCCGCCGCCGCCTCCCACCACGTATGCGCCCTCGCGCTCC
AGCTCCTTGCCTCCCCCGCCGCTGCCGCCGCGCCCGACCTCGCCGTCCACCTCGCGCACGACCTCGTGCCCCACCTGTCC
CGTGGCAGCCCGCGCGCTATCGCAGCCGCAGCGCGCATCATAGCCGCCTCCCCGTCTACTGGTGTGCCGGTCCTCTTCAA
GCCGCTGGCTGCATGTCTTGCTTCGTCCGACCCACGGGCGTCAACTGCGGCTGCGTCCGCCTTCTGTGAGCTGTCGGCGC
CGCCGGCTGATGTGGCCCCATTCCTGCCTCTCGCGCCTGACCTTTACAATCTGCTAACCACATCCCGCTCCAACTGGGCG
CTCATCAAGGTGCTCAAGATATTTGCTAGGCTGGCCCCTCTGGAGTCGCGCCTAGCTGCGCGGATTGTTGATCCAGTCTG
CCAGCTCCTCACTCGTTCATCAGCCATGTCGCTGACATTCGAGTGTGTCCGCACGGTGCTAACTGCACTACCAGCGCATG
GTGCCGCAGTGAGCCTTGCCATTGGGAAAGTCAAGGAATTCCTTGCTGCTTCTGATGATCCTAACCTGCGCTATCTCGGG
CTCTTGGCACTTGGTATGCTTGGCCCAGCATATGCATCAACTGTCAATGAGAGCCGTGATGTGATTGCCCTGTCACTGGG
TGATGCTGACTCAAACATCCGTAGGGAGGCATTGCACCTTATGATGGGAATGGTTGATGAAAACAATGTCATGGATATTG
CTGGCATGCTGGTCAGTCATGCCGCAAGGTCAGACCCAGAGTTTGCAAATGACATTCTTGGTGCCGTCCTAGCAGCATGT
GGGCGCAATGTATATGAGCTGGTGTCAGATTTTGATTGGTATGTCTCACTACTCGCAGATATGGCTAGGAGCTTGCACTG
TGCGCAGGGGGATGAGATTGGTCGCCAGCTTGTTGATGTGGGACTTAGGGTGCATGATGCACGGCCAGAGCTTGTCCGTT
CAGCTCGATCTCTCCTAATTGATCCTGCCTTGCTTGGGAACAATCTCCTATGCTCTGTTCTTTCTGCTGCTGCATGGGTC
TCTGGTGAGTATATTGATTGTAGCAAGGATCCTGTTGAGCTTGTTGAGGCACTATCACAGCCAAGGACTAGCCTCTTGCC
AATGTCAGTGAGAGCTGTGTACATCCAGGCAGTACTTAAAGTGGTCACCTTCTGTTGCAATTTATATGTAGAGAGTTCGA
ATGATTCAAACAAGGAATCGGATCTAGTGTTTGATGAGTTAGCTGTTGATCAAACTGTCAGTAGGGGAAGCAAGTCTGAA
ATTCAACCTGCTGAAGAACAAATCGTTATGCCAGGCACAGCTAAAAATGACCCCTTTTCAAACAAATCAATAGTTTACAT
GATTAACTTGATTGAAACAACGGTTGGGCCCCTTGTTGAGTCCAAGGAAGTTGAGGTCCTGGAGAGGGCGCGCAACCTGA
TGGGTTTTGTCCATTTGTTAAGAGAGATCTGGGAGTTGAAGGAAAGGAAGGTCAGTGATCATAACAAGCATAAACGGGTC
GTGGAGCTCATTAATAGTATGCAAACAGTATTCTCTCAGGAATTAAGGCCTGTTTCTGTGAATGCCCAGAAGAAAATTTC
CCTTCCTGAGGATCTTGTCTTGCATGAAAATCTGTCTGAACTTGCTGACATTTTAAGTGAAGATGACACTATTCTGTCAA
CTTCAATCTCTTTTATCTCTCGCAACTGTCATTCTGTAGAGACTAGAGATGAGCCTGCAGTAGTGTCAGTTGATTCATCT
TCTCTTTTTGAGCACCGTAAACGACACGGGATATACTATCTCCCAACAGGAAAAGCTGAGGATGACGCAAATAGCTACCC
TCGTGCCAATGATCCTCTTCTTTCTGCTGAGAATGCAAGTGCCATGGAGGATAAATCCGAGACTGTCCAGCCTGTATCTG
CTGGGAAAAAATTGAAGGCCATGAGGTCCAGACCAAAAGTAGTGAAATTGGATGGCGAAGATTTCCTAAGTTCTATGATG
ACTAGTGCAAATATTCTAAAGGCTGCAGATAAGTCAGAAGTCATGGGCAAAAAAATGGACACTGGCGAATCTAGTTCTCA
ATGGATACAGAACATATATGCTGATACTGGAAGCCTTTCTACTTCAAGTTCTAGGACAAGTAAGCAACCCGATCTTACTA
AAGAGAAGAGCACAATACCTCTTGACAGTGATAAGAAAGAGCCGAGAAAGCATAGAACCTCTTCTAGGAGTGGGCATCGT
CAAGGAAAACATACACACAGAGAAAGACCTAGTACTCAGCCTGATGTTGCACCTCAAGCTCCGGTTGTTCAAGATTTCCT
TCTGTAG-------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G215000
AGCGAATAACTTACATTTAGGAGGAGCTCAAATTT-CTAGATGGTGGTCTTGAAGCTGGTGGCGGTTGCCCCGATGAATC
GGGCACGATAAGCAGAGTCCACGAAGTAGCGCCCGGAGGTCGTCATCTTCCACGAGATGGCGTTGCCA-TTGGTTAGTGT
GGAGTTGAAGTTGGGACGTGAATCACCAATGTTAAAAGAATTCATGGATGTGTCATAACATGATCCAGTTCATTGTTGAG
TTGAACCTGGGACATGAAACAGCCGAGTCCAGAGCATCAAAGTCCATTCAACCCATGGCCAACAGAGCTGCAAAGCGAGG
ACGGACATCTTGATGTTAAGCACTCCCAACCAGCCAAGAATGGTGGGATGAAAGATGATCTCTCAATTTATTTTATGTTT
AACACCAAAGACTTTATTGAAGCCTGTCCCAAGAAAGGCCCTCCTTATCTTGTCCATGAATTGCAAGACCTCGGTCGGTA
CGTCGATGGAGGTCGGTATGTCCATGAACCGAACTTGACCAACACCGTGTGACCTGTTGCGATGAAGTGCTTTCTCGTTC
AAGAAAGTAAAATTTTCAGTAATTTTACTATCAAGGTGTTGAAAGTTGATACTTTTGGGTCGTCTGACAGATAGATGAAG
CCCAAAAT-AT---------------------------------------------------------------------
------TACATGGGAAAGAAAGAAAGACATGCATTGCCCTATGCCATCAAGATTAAGGTCATTGTGGGTGTTAAAGAAGG
CTTTTGAAAATTTGTTTTCAAG-CCGGTGACCTTCCCAAAATATTATGGCATCTATCGTTTA------------------
------------------------------------------------------------CTAGCAAGCAAAGTAAGCAG
TGGTTATTGCAGTTTA-------TACTAAGTCTAAAATTAATCTTTATGGTATGTAATTTAGAT---ATAGGAATTACTA
GACTTGACTCATGGTGGCTATTTCGCTATTCTAACTAGGTCCTCGTCGTTGCAATGAGATCGACCTAACCTGCGCGGACG
CAGAGAGGACAGATCCACCAGGCAACCATC--------------------------------------------------
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------------------CCTCTCCCACCTCTGTGATGGCTTCCGCCCCGTCGGCTCCGTCGACGGCGCCGTCACTGGTG
GACACCCTCTTCCAGCGCTCGCTGGACGACCTCGTCAAGTCCCTCCGCGCCGACCCTTCAGCCGCCGGCGAGTCGCTGGC
CGTCGCCCGCGCCCTCTCCGAGATCCACCGTGAGATCCGCGCCCCGGACGCGGCGACCAAGGCCGTCGCGCTCCAGAAGT
TCACCTACCTCTCCTCCCTCCACTTCGTCCCCGTCGCCTCCCACCCGCTCGCGTTCCCCGCCATCGAGCTCCTCGCCTCG
CCGCACCTCCCGCACAAGCGCCTCGCCTACCTCGCCGCCTCGCTGTCGCTGCACCCCGCCTCGCTCTCCCTCCTCCCGCT
CGCCACCCACCAGATCCACAAGGACCTCTCTCCTTCCACCTCCGCCGCCGCCTCCCACCACGTATGCGCCCTCGCGCTCC
AGCTCCTTGCCTCCCCCGCCGCTGCCGCCGCGCCCGACCTCGCCGTCCACCTCGCGCACGACCTCGTGCCCCACCTGTCC
CGTGGCAGCCCGCGCGCTATCGCAGCCGCAGCGCGCATCATAGCCGCCTCCCCGTCTACTGGTGTGCCGGTCCTCTTCAA
GCCGCTGGCTGCATGTCTTGCTTCGTCCGACCCACGGGCGTCAACTGCGGCTGCGTCCGCCTTCTGTGAGCTGTCGGCGC
CGCCGGCTGATGTGGCCCCATTCCTGCCTCTCGCGCCTGACCTTTACAATCTGCTAACCACATCCCGCTCCAACTGGGCG
CTCATCAAGGTGCTCAAGATATTTGCTAGGCTGGCCCCTCTGGAGTCGCGCCTAGCTGCGCGGATTGTTGATCCAGTCTG
CCAGCTCCTCACTCGTTCATCAGCCATGTCGCTGACATTCGAGTGTGTCCGCACGGTGCTAACTGCACTACCAGCGCATG
GTGCCGCAGTGAGCCTTGCCATTGGGAAAGTCAAGGAATTCCTTGCTGCTTCTGATGATCCTAACCTGCGCTATCTCGGG
CTCTTGGCACTTGGTATGCTTGGCCCAGCATATGCATCAACTGTCAATGAGAGCCGTGATGTGATTGCCCTGTCACTGGG
TGATGCTGACTCAAACATCCGTAGGGAGGCATTGCACCTTATGATGGGAATGGTTGATGAAAACAATGTCATGGATATTG
CTGGCATGCTGGTCAGTCATGCCGCAAGGTCAGACCCAGAGTTTGCAAATGACATTCTTGGTGCCGTCCTAGCAGCATGT
GGGCGCAATGTATATGAGCTGGTGTCAGATTTTGATTGGTATGTCTCACTACTCGCAGATATGGCTAGGAGCTTGCACTG
TGCGCAGGGGGATGAGATTGGTCGCCAGCTTGTTGATGTGGGACTTAGGGTGCATGATGCACGGCCAGAGCTTGTCCGTT
CAGCTCGATCTCTCCTAATTGATCCTGCCTTGCTTGGGAACAATCTCCTATGCTCTGTTCTTTCTGCTGCTGCATGGGTC
TCTGGTGAGTATATTGATTGTAGCAAGGATCCTGTTGAGCTTGTTGAGGCACTATCACAGCCAAGGACTAGCCTCTTGCC
AATGTCAGTGAGAGCTGTGTACATCCAGGCAGTACTTAAAGTGGTCACCTTCTGTTGCAATTTATATGTAGAGAGTTCGA
ATGATTCAAACAAGGAATCGGATCTAGTGTTTGATGAGTTAGCTGTTGATCAAACTGTCAGTAGGGGAAGCAAGTCTGAA
ATTCAACCTGCTGAAGAACAAATCGTTATGCCAGGCACAGCTAAAAATGACCCCTTTTCAAACAAATCAATAGTTTACAT
GATTAACTTGATTGAAACAACGGTTGGGCCCCTTGTTGAGTCCAAGGAAGTTGAGGTCCTGGAGAGGGCGCGCAACCTGA
TGGGTTTTGTCCATTTGTTAAGAGAGATCTGGGAGTTGAAGGAAAGGAAGGTCAGTGATCATAACAAGCATAAACGGGTC
GTGGAGCTCATTAATAGTATGCAAACAGTATTCTCTCAGGAATTAAGGCCTGTTTCTGTGAATGCCCAGAAGAAAATTTC
CCTTCCTGAGGATCTTGTCTTGCATGAAAATCTGTCTGAACTTGCTGACATTTTAAGTGAAGATGACACTATTCTGTCAA
CTTCAATCTCTTTTATCTCTCGCAACTGTCATTCTGTAGAGACTAGAGATGAGCCTGCAGTAGTGTCAGTTGATTCATCT
TCTCTTTTTGAGCACCGTAAACGACACGGGATATACTATCTCCCAACAGGAAAAGCTGAGGATGACGCAAATAGCTACCC
TCGTGCCAATGATCCTCTTCTTTCTGCTGAGAATGCAAGTGCCATGGAGGATAAATCCGAGACTGTCCAGCCTGTATCTG
CTGGGAAAAAATTGAAGGCCATGAGGTCCAGACCAAAAGTAGTGAAATTGGATGGCGAAGATTTCCTAAGTTCTATGATG
ACTAGTGCAAATATTCTAAAGGCTGCAGATAAGTCAGAAGTCATGGGCAAAAAAATGGACACTGGCGAATCTAGTTCTCA
ATGGATACAGAACATATATGCTGATACTGGAAGCCTTTCTACTTCAAGTTCTAGGACAAGTAAGCAACCCGATCTTACTA
AAGAGAAGAGCACAATACCTCTTGACAGTGATAAGAAAGAGCCGAGAAAGCATAGAACCTCTTCTAGGAGTGGGCATCGT
CAAGGAAAACATACACACAGAGAAAGACCTAGTACTCAGCCTGATGTTGCACCTCAAGCTCCGGTTGTTCAAGATTTCCT
TCTGTAGCTGCCGAGA--TTTTTTTTGCTTGGTACGTTACAATTACGAAATACAAGTTGATGTGTTGTATTGTTCATTTG
AATGAGGAAGAACATAGGTGTACATGGATGTTAACCTCTTCTGCTAAATTTTCTGTTAGGTCTTTGTATACTATCCCAAA
GGTTAGTTAAACTAGATGCCCATTTAAGAAAATTTGGTGCATGAAAGTGCCAGTGAAAATCAAAGGTTTTTTT------G
TGTGGTTGGTGTTTATAAAGAGTATTTTGACTAGAGACGGT-TAA-----------------------------------
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------------------------------------ATAAAAGACGGAAGTGATAGTCTGATAGATGTTTGTTTTGTTAG
GAAAAAAAAGCTATAGACCCTCTATTTCTGCACTGTTCTATTGCTAGATATATCTGGAGTTCTGGATTATAGTGAAATGT
GTGTTTTGGTATTGATTTTCGAGTAGACACAGTAAATGATCTTTGTAAGTATGTGTTAGCCTTCGATGGTAAGGATGCAC
AGCTAATTTCTGTTGCGCTGTGGGCAATCTGAAAGCAAGAAATGCTGCGCACTTCAACAAAAAGTTCCCTTTTGATCCTA
CAGCATTATAGTTTCTCAGGATTTTTGCTGGCTGACCTTTAGGGCGGTTATACATAGACG----------------AAAC
CTGCAAAAGGCGTGACGACAAGGGGCAAAAAAATCTTCAGCTAGTAGCGGTTGAAATCTTCCATCGTCGAAAAGGGTGGA
GGCCTATGGTAAGTCAAATGTTGCAAGGTGGCTGTGAACTTGGTAAGTTTTTGATGG-----TAGGACTGAGTTCTGTTT
TGTTCTGTTTGAGGTCTTCGAGAATTTAGTTGGCTCCTGTGGTGTTTTGGTTCTCGAGGCTGAGTGTAGCTGTAGGATGG
TTTGGAGCTTGCGAGGTCAGTCTGTGTGGCTTGTGCCACCTGACAGAATGGGTATCTTGATGTGGAACTTGGTTGTTGTT
CAGTTTTCATGGAAATGAAAATTGGGGCGGGGAGCCCCTTGGGTCGAAAAAGAATACGTTTGATGTGT
>chr1B_1
AGCGAATAACTTACATTTGGGAGGAGCCCAAATTTTCTAGATGGTGGTCTTGAAGATGGTGGCGGTTGCCCCGATGAATC
GGGCACAATAAGTAGAGTCCACAGAGTAGCGCCCGAAGGTCGTCATCTTCCACGGGATGGTGTTGCAGCTTGGTTAGTGT
GGAGTTGAAGTTGGGACGTGAATCACCAGTGTTAAAAGAATTCATGGATGTGTCGTAACATGATCCAGTTCATTGCTTAG
TTGAACCTGGGACATGAAACAACCAAGTCCACTCCA------TCCATTCAACCCAGGGCCAACAGAGCTGTAAAGCGAGG
ACGAACATTTTGAGGTTAAGCACTCCCAACCAGCCAAGAATGGTGGGATGAAAGATGATCTCTCGATTTAT------TTT
GACACCGAAGACTTTATTGAAGTATGTCCCTAGTGAGTCCCTTCTTATCTTGTCCATAAATTGCAAGACCTCAGTCGGTA
TGTCGATGGAGGTCGGTATGCCCATGAACCGC-CTTGACCAACGTCGTGTGACCTGTTGCGATGAAGTGCTTTCTCGTTC
AAGAAAGTA-AATTTTCAGTAATTTTACCATCAAAGTGTTGAAAGTTGATCCTT-------------CAGATAGAGGAAG
CCCAAAAAAAT---------------------------------------------------------------------
------TACATGGGAAAGGAAGAAAGACATGCTTTGCCTTATGCTATCAAGATTAAGGTCATTGTGGGTGTCAAAGAAGG
TTTTTGAAAGTTTATTTTCAAGGCCGGTGACCTCCCTAAAATCTTATCGCATCTATCATTTAATTTGGTACTC-------
---------------AATTTGATACTCCTAGCAAATTATAGTAAAAGATTAATAGTAGTACTAGCAAGCTT-------AG
TGGTTATTGCAGTTTGGGCGTTGTACTAAGTCTAAAATTAATCTTTATGGTATGGAGTATAATTTAGATAGGAATTACTA
GATTTGACTCATGGTGGCTATTTTGCTATTCTAACTAGGCCCTCATCGTTGCAATGAGATCGACCTAACCTGCGCGGACG
CACAGAGGACAGATCCACCAGGCAACCACTCTCCCACCGAAAGAAGTCCAGATCACCCCCTGGGGTTTCACAAACCGGCT
AATTCACCCCCTAAGCTCTAAAACCAGTTAAGTAACCCCCTGAGGTCTCTAATACCATTTAAATCACCCCCTTGCGCTGA
TTATAGTGGTTTCTGCAGGTGGTTTTGCTTGCGGGGCGTTGGACGACTGCCATATCAGCTTGATGTGGTGGGTCTTGTTA
ACTGCTCCTCCTGTTTTGGACTTGTCTCCCTTCTTTCCTTCGACGACGCGGCGGCAGCCGGCAGAGCAAAACCAACCAAT
GCCAAACCAATCAAAAATGCTACAGTTTCGGTCAGCTAATACAACACTGAGAATACTGCCAATTCACATAGAAAATGAGC
AACATCATACAACCCAAATACTGCTAATTTGAAAAGGAAAATTAAGAAGCAGGACATGGCCAAAATTCAGTAATAGTTCT
ACATTACATTCACTACTTTTTATTATCTCTCAACCTGCCACAATGCCAAAGTACTGCTTAATTCACCCTCATACTAACTA
AGACAACACTACCATTACACTTTACACAGACAAATGGTAAAACAACTGAAACAAGCCAGAACAGCATTGCAAGTTTCTTC
ATTTTCTGAACTTCAAAAAGCTTCTGTGCACCTAGCTTTTCTTGAATCTCTAGCTTCTTTGCAAACTCTGAAGCTTGCTA
TCACAACTTCAGCAAGTGTGTCCAACTTGCTTGCAAAGGCGATTGGCGACCTCATGTTACCGCGGAGGCCGAGCGCTGAA
GACAATCCCGGGACTGACGACCATGGTGACGAATAGGGGAGGAGAGGAACTTGGGAACAGGGGAGGACGAACTTTAGTTG
TCTGCCATGCTGACGTACACGGGAGGAGAGGAACAAGAGAACATGCGAGGACGAGCTTGAACTGGCGCTTTCCATCAAGC
CTATGTGGCAGTAGTCCAACGTCACGCAAGGAAAACTGCCCTCAGAAACCACTATAATCAGCGCAAAGGGGTGATTTCCC
TGGTATTAGAGACTTCAGGGGGTTACTTGACTGGTTTTAGAGCTGAGGGGGTGGATTAGCCGGTTTATGAAACCCCAGGA
GGTGATCTGGACTTCTTTCCTCTCCCACCTCTGTGATGGCTTCCGCCCCGTCGGCCCCGTCGACGGCGCCGTCACTGGTG
GACACCCTCTTCCAGCGCTCGCTGGACGATCTCGTCAAGTCCCTCCGCGCCGACCCTTCAGCCGCCGGCGAGTCGTTGGC
CGTTGGCCGCGCCCTCTCCGAGATCCACCGTGAGATCCGCGCCCCGGACGCGGCAACCAAGGCCGTCGCGCTCCAGAAGT
TCACCTACCTCTCCTCCCTCCACTTCGTCCCCGTCGTCTCTCACCCGCACGCGTTCCCCGCCATCGAGCTCCTCGCCTCG
CCGCACCTCCCACACAAGCGCCTCGCCTATCTCGCCGCCTCGCTGTCGCTCCACCCCGCCTCGCTCTCCCTCCTCCCGCT
CGCCACCCACCAGATCCACAAGGACCTCTCTCCTTCCACCTCCGCCGCCGCCTCCCACCACGTATGCGCCCTCGCGCTCC
AGCTCCTTGCCTCCCCCGCCGCAGCCGCCGCGCCCGACCTCGCCGTCCACCTCGCGCACGACCTCGTGCCCCACCTGTCC
CGTGGCAGCCCACGCGCTATCGCTGCCGCAGCGCGCATCATAGCCGCCTCCCCGTCTACTGGTGTGCCGGTCCTCTTCAA
GCCACTGGCTGCATGTCTTGCTTCGTCCGACCCACGGGCGTCAACTGCGGCTGCATCCGCCTTCTGTGAGCTGTCGGCGC
CGCCGGCTGATGTGGCCCCATTCCTGCCTCTCGCGCCTGACCTTTACAATCTGCTAACCACATCCCGCTCCAACTGGGCG
CTCATCAAGGTGCTCAAGATATTTGCTAGGCTGGCTCCTCTGGAGTCACGTCTAGCCGCACGGATTGTTGATCCAGTCTG
CCAGCTCCTCACTCGTTCTTCAGCCATGTCGCTGACATTCGAGTGTGTCCGCACGGTGCTAACTGCACTACCGGCGCATG
GTGCCGCAGTGAGCCTTGCCATTGGGAAAGTCAAGGAATTCCTTGCTGCTTCTGATGATCCTAACCTGCGCTATCTTGGC
CTCTTGGCACTTGGTATGCTTGGCCCAGCATATGCATCAACTGTCAATGAGAGTCGTGATGTGATTGCCCTGTCACTGGG
TGATGCTGACTCAAACATCCGTAGGGAGGCATTGCACCTTATGATGGGAATGGTTGATGAAAACAATGTCATGGATATTG
CTGGCATGCTGGTCAGTCATGCCGCAAGGTCAGACCCAGAGTTTGCAAATGATATTCTTGGGGCCGTCCTAGCAGCATGT
GGGCGCAATGTATATGAGCTGGTGTCAGATTTTGATTGGTATATCTCACTACTCGCAGATATGGCTAGGAGCTTGCACTG
TGCGCAGGGGGATGAGATTGGTCGCCAGCTTGTTGATGTGGGACTTAGGGTGCATGATGCACGGCCAGAGCTTGTCCGTT
CAGCTCGATCTCTCTTAATTGATCCTGCTTTGCTTGGGAACAATCTCCTATGCTCTGTTCTTTCTGCTGCTGCATGGGTC
TCTGGTGAGTATATTGATTGTAGCAAGGATCCTGTTGAGCTTGTTGAGGCACTGTCACAGCCAAGGACTAGCCTCTTGCC
AATGTCAGTGAGAGCTGTGTACATCCAGGCAGTACTTAAAGTGGTCACCTTCTGTTGCAATTTATATGTAGAGAGTTCGA
ATGATTCAAACAAGGAATCGGATCTAGTGTTTGATGAGTTAGCTGTTGATCAAACTGTTAGTAGGGGAAGCAAGTCTGAA
ACTCAACCTGCTGAAGAACAAATCATTATGCCAGGCACAGCTAAAAATGACCCCTTTTCAAACAAATCAATAGTTTACAT
GATTAACTTGATTGAAACAACGGTTGGGCCACTTGTTGAGTCCAAGGAAGTTGAGGTCCTGGAGAGGGCACGCAACCTGA
TTGGTTTTGTCCATTTGTTAAGAGAGATCTGGGAGTTGAAGGAAAGGAAGGTCAGTGATCATAACAAGCATAACCGGGTC
GTGGAGCTTATTAATAGTATGCAAAAAGTATTCTCTCAGGAATTAAGGCCTGTTTCTGTGAATGCCCAGAAGAAAATTTC
CCTTCCTGAGGATCTTGTCTTGCATGAAAATCTGTCTGAACTTGCTGACATTTTAAGTGAAGATGACACTATTCTGTCAA
CTTCAATCTCTTTTATCTCTCGCAACTGTCATTCTGTAGAGACTAGAGATGAGCCTGCAGTAGTGTCAGTTGATTCATCT
TCTCTTTTTGAGCACCGTAAACGGCACGGGATATACTATCTCCCAACAGGAAAAGCTGAGGATGACGCAAATAGCTACCC
TCGTGCCAATGATCCTCTTCTTTCCGCTGAGAATGCAAGTGCCATGGAGGATAAATCCGAGACTGTCCAGCCTGTATCTG
CTGGGAAAAAATTGAAGGCCATGAGGTCCAGACCAAAAGTAGTGAAATTGGATGGCGAAGATTTCCTAAGTTCTATGATG
ACTAGTGCAAATATTCTAAAGGCTGCAGATAAGTCAGAAGTCATGGGCAAAAAAATGGACACTGGCGAATCTAGTTCTCA
ATGGATACAGAACATATATGCTGATACTGGAAGCCTTTCTACTTCAAGTTCTAGGACAAGTAAGCAACACGATCTTACTA
AAGAGAAGAGCACAATACCTCCTGACAGTGATAAGAAAGAGCCGAGAAAGCATAGAACCTCTTCTAGGAGTGGGCATCGT
CAAGGAAAACATACGCACAGAGAAAGACCTAGTACTCAGCCTGATGTTGCACCTCAAGCTCCGGTTGTTCAAGATTTCCT
TCTGTAGCTGCCGAGA--TTTTTTTTGCTTGGTAAGTCACAATTACGAAATACAAGTTGATGTGTTGTAATGTTCATTTG
AATGAGGAAGAACATAGGTGTACATGGATGTTAACCTCTTCTGGTAAATTTTCTGTTAGGTCTTTGTATACTATCCCAGA
GGCTAGTTAAACTAGATGCCCATTTAAGAAAATGTGGTACATGAAAGTGCCAGTGAAAATCAAAGTTCTTTTTTTTTGTG
TGTGGTTGGTGTTTAAAAAGAGTATTTTGACTAGAGACGTCTTAGATAAAAGATGTGGAGTGGGAGGTGATAGATGTTTG
TTTTGTGGTTGGCGTACATGGATGTTAACCTCTTCTGGTAAATTTTCTGTTAGGTCTTTGTATACTATCCCAGAGGCTAG
TTAAACTAGATGCCCATTTAAGAAAATGTGGTACATGAAAGTGCCCGTGAAAATCAAAGTTCTTTTTTTTGTGTGGTTGA
TGTTTAAAAGGAGTATTTTGACTAGAGACGTCTTAGATAAAAGATGTGGAGTGGGAAGTGATAGATGTTTGTTTTGTGAG
GAGAAATAAGCTATAGACCCTCTATTTCTGCAGCGTTCTATTGCTAGATATATCTGGAGTTCTGGATTGTAGTGAAATGT
GTGTTTTGGTATTGATTTTCGAGTAGAGACAGTAAATGATCTTTGTAAGTATGTGTTAGCCTTCGATGGTAAGGACACAC
AGCTAATTTTTGTTGTGCTGTGGGCAATCTGAAAGCAAGAAATGCTGCGCATTTCAACAAAAAGTTCCCTTTTGATCCTA
CAGCAGTGTAGTTTCTCAGGATTTTTGCTGGCTGACCTTTCGG----------------G----------------AAAC
CTGCAAAAGGTGCAACGACAAGGGGCAAAAAAG-CTTCAGCTAGTAGCGGTTGAAATCTTCCATCGTCGAAAAGGGTGGC
AGCCTATGGTAAGTCAAATGTTGCAAGGTGGCTGTGAACTTGGTGGGTTTTTGGTGGTACTCTAGGACTGAGCTCTGTTT
TGTTCTGTTTGAGGTCTTCGAGAATTTAGTTGGCTCCTGTGGTGTTTTGGTTCTCGAGGCTGAGTGTAGCTGTATGATGG
TTTGGAGGTTGCGAGGTCAGTCTGTGTGGCATGTGCCACCTGACAGAATGGGTATCTTGATGTGGGACTTGGTTGTTGTT
CAGTTTTCATGGAAATGAAAATTGGGGCAGGGAGGCCCTTGGGTCGAAAAAGAATACGTTGATGTGT-
>chr1A_392
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-------------------------------------------------------------------------TATGTTT
GACACCAAAGACTTTATTGAAGTTTGTCCCAAGAAAGGCCCTCCTTATCTTGTCCATGAATCGCAAGACCCCGATCGGTA
CATCGATGGAGGTCGGTATGTCCATGAACCGAACTTGACCAACACCGTGTGACCTGTTGCGATGAAGTGCTTTCTCGTTC
ATGAAA-TAAAAAATTTAGTATTTTTACCATCAAGGTGTTGAAAGTTAATCCTTTTGGTTCATGTGACAAATAGAGGTAG
CTCAGAAT-ATTACTCCCTCCGTAAATTAATATAAGAGCATTTAGAATACTATTCTAAACACTCTTATATAAGTTTACGG
AGGGAGTACATGGGAAAGGAAGAAAGACATGATTTCCCTTATATCATCAAGATTAAGGTCATTGTGGGTGTTAAATAAGG
CTTTTGAAAACTTGTTTTCAGAC----TGACCTCCCCAAAATCTTATGGCATCCATCGTTTAATTTGGTACTCCTAGCAA
ATTATACTACAAGCTAATTTGATACTCCTAACAAATTATAGTACAAGATAAGTAGTAGTACTAGCAAGCAAAGTAAGCAG
TGGTTATTGTAGTTTA-------TACCAAGTCTAAAATTAATCTT-ATGGTATATAATTTATAT---A---GAATTACTA
GATTTGACTCATGGTGGCTATTTTGATATT--------------------------------------------------
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>chr1A_895
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---------------------TTCGCTATTCTAACTAGGTCCTCATCGTTGCAATGAGATCGACCAAACCTGCGCGGACG
CAGAGAGGACAGATCCACCAGGCAACCATC--------------------------------------------------
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------------------CCTCTCCCACCTCTGTGATGGCTTCCGCCCCGTCGGCCCCGTCGACGGCGCCGTCACTGGTG
GACACCCTCTTCCAGCGCTCGCTGGACGATCTCGTCAAGTCCCTCCGCGCCGACCCTTCAGCCGCCGGCGAGTCGCTGGC
CGTCGGCCGCGCCCTCTCCGAGATCCACCGCGAGATCCGCGCCCCGGACGCGGCGACCAAGGCCGTCGCGCTCCAGAAGT
TCACCTACCTCTCCTCCCTCCACTTCGTCCCCGTCGCCTCCCACCCGCTCGCGTTCCCCGCCATCGAGCTCCTCGCCTCG
CCGCACCTCCCGCACAAGCGCCTCGCCTACCTCGCCGCCTCGCTGTCGCTCCACCCAGCCTCGCTCTCCCTCCTCCCGCT
CGCCACCCACCAGATCCACAAGGACCTCTCCCCTTCCACCTCCGCCGCCGCCTCCCACCACGTATGCGCCCTCGCGCTCC
AGCTCCTTGCCTCCCCCGCCGCAGCCGCCGCGCCCGACCTCGCCGTCCACCTCGCGCACGACCTCGTGCCCCACCTGTCC
CGTGGCAGCCCGCGCGCTATCGCAGCCGCAGCGCGCATCATAGCCGCCTCCCCGTCTACTGGTGTGCCGGTCCTCTTCAA
GCCGCTGGCGGCATGCCTTGCTTCGTCCGACCCACGGGCGTCAACTGCGGCTGCATCCGCCTTCTGTGAGCTGTCGGCGC
CGCCGGCTGATGTGGCCCCATTCCTGCCTCTCGCGCCTGACCTTTACAATCTGCTAACCACATCGCGCTCCAACTGGGCG
CTCATCAAGGTGCTCAAGATATTTGCTAGGCTGGCTCCTTTGGAGTCGCGTCTGGCCGCACGGATTGTTGATCCAGTCTG
CCAGCTCCTCACTCGTTCTTCAGCCATGTCGCTGACATTCGAGTGTGTCCGCACAGTGCTAACTGCACTACCCGCGCATG
GCGCTGCAGTGAGCCTTGCCATTGGGAAAGTCAAGGAATTCCTTGCTGCTTCTGATGATCCTAACCTGCGCTATCTCGGG
CTCTTGGCACTTGGTATGCTTGGCCCAGCATATGCATCAACTGTCAATGAGAGCCGTGATGTGATTGCCCTGTCACTGGG
TGATGCTGATTCAAACATCCGCAGGGAGGCATTGCACCTTATGATGGGAATGGTTGATGAAAACAATGTCATGGATATTG
CTGGCATGCTGGTCAGTCATGCCGCAAGGTCAGACCCAGAGTTTGCAAATGATATTCTTGGGGCCGTCCTAGCAGCATGT
GGGCGCAATGTATATGAGCTGGTGTCAGATTTTGATTGGTATGTCTCGCTACTGGAAGATATGGCTAGGAGCTTGCATTG
TGTGCAGGGGGATGAGATTGGTCGCCAGCTTGTTGATGTGGGACTTAGGGTGCATGATGCACGGCCAGAGCTTGTTCGTT
CAGCTCGATCTCTCCTAATTGATCCTGCTTTGCTTGGGAACAATCTCCTATGCTCTGTTCTTTCTGCTGCTGCATGGGTC
TCTGGTGAGTATATTGATTGTAGCAAGGATCCTGTTGAGCTTGTTGAGGCACTATCACAGCCAAGGACTAGCCTCTTGCC
AATGTCAGTGAGAGCTGTCTACATCCAGGCAGTACTTAAAGTGGTCACCTTCTGTTGCAATTTATATGTAGAGAGTTCGA
ATGATTCAAACAAGGAATCGGATATAGTGTTTGATGAGTTAGCTGTTGATCAAACTGTTAGCAGGGGAATCAAGTCTGAA
ATTCGTCCTGCTGAAGAACAAATCGTTATGCCAGGCACAGCTAAAAACGACCCCTTTTCAAACAAATCAATAGTTTACAT
GATTAACTTGGTTGAAACAACGGTTGGACCACTTGTTGAGTCCAAGGAAGTTGAGGTCCTGGAGAGGGCACGCAACCTGA
TGGGTTTTGTCCATTTGTTAAGAGAGATCTGGGAGTTGAAGGAAAGGAAGGTCAGTGATCATAACAAGCATAACCGGGTC
ATGGAGCTCATTAATAGTATGCAAACAGTATTCTCTCAGGAATTAAGGCCTGTTTCTGTGAATGCCCAGAAGAAAATTTC
CCTTCCTGAGGATCTTGTCTTGCATGAAAATCTGTCTGAACTTGCTGACATTTTAAGTGAAGATGACACTACTCTGTCAA
CTTCAATTTCTTTTATCTCTCGCAACTGTCATTCTGTAGAGACTAGAGATGAGCCTGCAGTAGTGTCAGTTGATTCATCT
TCTCTTTTTGAGCACCGTAAACGGCATGGGATGTACTATCTCCCAACAGGAAAAGCTGAGGATGACGCAAATAACTACCC
TCGTGCCAATGATCCTCTTCTTTCTGTTGAGAATGCAAGTGCCATGGAGGATAAATCCGAGACTGTCCAGCCTGTATCTG
CTGGGAAAAAATTGAAGGCCATGAGGTCCAGACCAAAAGTAGTGAAATTGGATGGCGAAGATTTCCTAAGTTCCATGATG
ACTAGTGCAAATATTCTAAAGGCTGCAGATAAGTCGGAAGGCATGGGCAAAAAAATGGACACTGCCGAATCTAGTTCTCA
ATGGATACAGAACATATATGCTGATACTGGAAGCCTTTCTACTTCAAGTTCTAGGACAAGTAAGCAACATGATCTTACTA
AAGAGAAGAGCACA---CCTCCTGACATTGATAGGAAAGAGGCGAGAAAGCATAAAACCTCTTCTAGGAGTGGGCATCGT
CAAGGAAAACATACGCACAGAGAAAGACCTAGTACTCAGCCTGATGTTGCACCTCAAGCTCCGGTTGTTCAAGATTTCCT
TCTGTAGCTGCCGAGATTTTTTTTTTGCTTGGTACGTTACAATTACGAAATACAAGTTGATGTGTTGTAATGTTCATTTG
AACGAGGAAGAACATAGGTGTACATGGATGTTAACCTCTTCTGGTAAATTTTCTGTTAGGTCTTTGTATACTATTCCAAA
GGCTAGTTAAACTAGATGACCATCTAAGAAAATGTGGTACATGAAAGTTCCAGTGAAGATCAAAGA--TTTTTTTTTGTG
TGTGGTTGGTGTTTAAAAAGAGTATTTTGACTAGAGACGTGGTAA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------ATAAAAGAGGTGGAGTGGGAAGTGATAGATGTTTGTTTAGTGAG
GAAAAATAACCTATAGACCCTTTATTTCTGTTTGTG--------------------------------------------
--------------------------------------------------------TAGCGTTCTATGGTAAGGATGCAC
AGCTAATTTCTGTTGTGCTTTGGGCAATCTGAAAGCAAGAAATGCTGCGCACTGCAACAAAAAGTTCCCTTTTGATCTTA
CAGCAGTATAGTTTCTCAGGATTTTTGTTGGCTGACCTTTAGG----------------GCTGGTATACATAGACGAAAC
CCGCAAAAGGCGCAACGACAAGGGGCAAAAAAG-TTTCAGCTAGTAGCAGTTGAAATCTTCCATCGTCGAAAAGGGTGGA
GGCCTATGGTAAGTCAAATGTTGCAAGGTGGCTGTGAACTTGGTAGGTTCTTGATGG-----TAGGACTGAGCTCTGTTT
TGTTCTATTTGAGGTCTTTGAGAATTGAGTTGGCTCCTGTGGTGTTTTGGTTCTTGAGGCTGAGTGTAGCTGTAGGATGG
TTTGGAGATTGCGAGGTCAGTCTGTGTGGCTTGTGCCACCTGACAGAATGGTTATCTTGATGTGGAACTTGGTTGTTGTT
CAGTTTTCATGGAAATGAAAATTGGGGAAGGGAGGCCCTTGGGTTGAAAGAGAATACGTTGATGTGT-
>SNPs
------------------S--------S---------------------------S------------------------
------S-----S---------SS-----------S------------------S-----S-----SS------------
----------------------------S-------------------------S--------------------S-S--
---------------------S--S------SSS--SSSSSS-------------S--------------S---------
---S----S----S--------------------------------------------------S------SS-------
S---------------------SS--------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------S-------S--S-S-----------S----
--------------------------------------------------------------------------------
------------------S-------------S-----S-----------------------------------------
---------------------------------S--------S-------------------------------------
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-------------------------------------------------------------S------------------
--S-----------------------------------------S-----------------------------------
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-------------------------------------------------------S------------------------
-----------------------------S--------------------------------------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
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----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------S-----S--S--------------------
------------------S-----------------------------------------------------S-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S--------S------------------
--------------------------------------------------------------------------------
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----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
------------------------------S--------------------------------------S----------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
---------------------S----------------------------------------------------------
--------------S-----------------------------------------------------------------
---------------------------------------------------------------------S----------
-------------------------------------------S------------------------------------
--S------------------------------S----S--------------------------S-S------------
---------------S-----------------------SS---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-SSSSSSSSSSSS-------------------S--
------S-------------------------SS----------------------------------S-----------
---------------------------S----------------------------------------------------
---------------S----------------------------------------------------------------
-----S-------------------------------------SSSSSSSSSSSSSSSS---------------------
------------SS------------------SS----------------------------------------------
---------------------------------------------S--------------------------S-------
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
----------------------------S-----S-------------------------SSSSSSSS
>forward_334
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--------------------------------------------------------------------------GCGAGG
ACGGACATCTTGAT------------------------------------------------------------------
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>reverse_3493
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----------------------------------------------------CATTCTTGGTGCCGTCCTAG--------
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>forward_834
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--------------GTTTTCAAGCCGGTGACCTT----------------------------------------------
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>reverse_3979
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----------------------------------------------------------CAGTAGGGGAAGCAAGTCTGA-
--------------------------------------------------------------------------------
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>forward_843
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----------------------GCCGGTGACCTTCCCAAAATA-------------------------------------
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>reverse_4234
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-------------------------------------------------------------------------ACGGGTC
GTGGAGCTCATTA-------------------------------------------------------------------
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>forward_4111
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-----------TTGAAACAACGGTTGGGCCC-------------------------------------------------
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>reverse_6168
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-------CTTGCGAGGTCAGTCTGTGT-----------------------------------------------------
--------------------------------------------------------------------
