Multiple sequence alignment - TraesCS1D01G211500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G211500 chr1D 100.000 2972 0 0 1 2972 297380242 297377271 0.000000e+00 5489.0
1 TraesCS1D01G211500 chr1D 83.636 165 21 4 7 171 489552721 489552563 1.850000e-32 150.0
2 TraesCS1D01G211500 chr1A 92.319 1979 59 36 544 2483 369998573 369996649 0.000000e+00 2726.0
3 TraesCS1D01G211500 chr1A 94.517 383 18 3 2591 2972 369996423 369996043 3.300000e-164 588.0
4 TraesCS1D01G211500 chr1A 74.834 302 56 14 1684 1969 375015375 375015078 5.200000e-23 119.0
5 TraesCS1D01G211500 chr1A 97.872 47 1 0 2484 2530 369996489 369996443 6.830000e-12 82.4
6 TraesCS1D01G211500 chr1B 96.274 1181 27 7 1248 2427 399799361 399798197 0.000000e+00 1921.0
7 TraesCS1D01G211500 chr1B 93.037 517 23 7 674 1182 399800087 399799576 0.000000e+00 743.0
8 TraesCS1D01G211500 chr1B 89.205 528 28 23 2425 2931 399798075 399797556 1.500000e-177 632.0
9 TraesCS1D01G211500 chr4D 81.469 286 36 11 9 279 469156021 469155738 4.990000e-53 219.0
10 TraesCS1D01G211500 chr3D 83.482 224 33 3 1 222 549630269 549630490 3.880000e-49 206.0
11 TraesCS1D01G211500 chr3D 86.842 114 13 2 1255 1367 575726148 575726260 3.110000e-25 126.0
12 TraesCS1D01G211500 chr3D 86.598 97 12 1 1 97 282959381 282959476 4.050000e-19 106.0
13 TraesCS1D01G211500 chr2A 98.246 114 2 0 1247 1360 706207810 706207923 1.810000e-47 200.0
14 TraesCS1D01G211500 chr2A 84.375 96 15 0 4 99 68258608 68258513 8.770000e-16 95.3
15 TraesCS1D01G211500 chr2D 96.491 114 4 0 1247 1360 565937071 565937184 3.910000e-44 189.0
16 TraesCS1D01G211500 chr2D 79.054 148 31 0 1 148 164990656 164990803 5.240000e-18 102.0
17 TraesCS1D01G211500 chr4A 79.577 284 39 12 9 279 323791074 323791351 5.060000e-43 185.0
18 TraesCS1D01G211500 chr2B 93.860 114 7 0 1247 1360 678379408 678379521 3.940000e-39 172.0
19 TraesCS1D01G211500 chr5D 82.812 192 26 6 1 189 530440025 530439838 6.590000e-37 165.0
20 TraesCS1D01G211500 chr3B 86.842 114 13 2 1255 1367 766631535 766631647 3.110000e-25 126.0
21 TraesCS1D01G211500 chr3B 86.598 97 12 1 1 97 367667511 367667416 4.050000e-19 106.0
22 TraesCS1D01G211500 chr6D 85.586 111 14 2 1258 1367 276456623 276456514 6.730000e-22 115.0
23 TraesCS1D01G211500 chr6B 85.586 111 14 2 1258 1367 438386655 438386546 6.730000e-22 115.0
24 TraesCS1D01G211500 chrUn 91.489 47 3 1 2715 2761 87877417 87877462 2.470000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G211500 chr1D 297377271 297380242 2971 True 5489.000000 5489 100.000000 1 2972 1 chr1D.!!$R1 2971
1 TraesCS1D01G211500 chr1A 369996043 369998573 2530 True 1132.133333 2726 94.902667 544 2972 3 chr1A.!!$R2 2428
2 TraesCS1D01G211500 chr1B 399797556 399800087 2531 True 1098.666667 1921 92.838667 674 2931 3 chr1B.!!$R1 2257

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 278 0.032267 GTACCCGGCTGTAGATGCTC 59.968 60.0 0.00 0.0 0.00 4.26 F
378 379 0.032678 CCCTCCCGATCGAGATGTTG 59.967 60.0 18.66 0.0 30.97 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 2127 1.404851 GCAGGCTCTAGAACTGGACAC 60.405 57.143 19.92 5.45 32.98 3.67 R
2336 2517 3.979948 TGCACCTTGTGATTTGTGAATG 58.020 40.909 0.00 0.00 35.23 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.697756 CCGGTGCGTGTCCCATGT 62.698 66.667 0.00 0.00 0.00 3.21
29 30 3.118454 CGGTGCGTGTCCCATGTC 61.118 66.667 0.00 0.00 0.00 3.06
30 31 2.746277 GGTGCGTGTCCCATGTCC 60.746 66.667 0.00 0.00 0.00 4.02
31 32 2.347490 GTGCGTGTCCCATGTCCT 59.653 61.111 0.00 0.00 0.00 3.85
32 33 1.594833 GTGCGTGTCCCATGTCCTA 59.405 57.895 0.00 0.00 0.00 2.94
33 34 0.739813 GTGCGTGTCCCATGTCCTAC 60.740 60.000 0.00 0.00 0.00 3.18
34 35 0.902984 TGCGTGTCCCATGTCCTACT 60.903 55.000 0.00 0.00 0.00 2.57
35 36 0.179108 GCGTGTCCCATGTCCTACTC 60.179 60.000 0.00 0.00 0.00 2.59
36 37 1.475403 CGTGTCCCATGTCCTACTCT 58.525 55.000 0.00 0.00 0.00 3.24
37 38 2.651455 CGTGTCCCATGTCCTACTCTA 58.349 52.381 0.00 0.00 0.00 2.43
38 39 3.223435 CGTGTCCCATGTCCTACTCTAT 58.777 50.000 0.00 0.00 0.00 1.98
39 40 3.253677 CGTGTCCCATGTCCTACTCTATC 59.746 52.174 0.00 0.00 0.00 2.08
40 41 4.475345 GTGTCCCATGTCCTACTCTATCT 58.525 47.826 0.00 0.00 0.00 1.98
41 42 4.521256 GTGTCCCATGTCCTACTCTATCTC 59.479 50.000 0.00 0.00 0.00 2.75
42 43 3.754323 GTCCCATGTCCTACTCTATCTCG 59.246 52.174 0.00 0.00 0.00 4.04
43 44 2.490115 CCCATGTCCTACTCTATCTCGC 59.510 54.545 0.00 0.00 0.00 5.03
44 45 3.417101 CCATGTCCTACTCTATCTCGCT 58.583 50.000 0.00 0.00 0.00 4.93
45 46 3.190327 CCATGTCCTACTCTATCTCGCTG 59.810 52.174 0.00 0.00 0.00 5.18
46 47 2.852449 TGTCCTACTCTATCTCGCTGG 58.148 52.381 0.00 0.00 0.00 4.85
47 48 1.538075 GTCCTACTCTATCTCGCTGGC 59.462 57.143 0.00 0.00 0.00 4.85
48 49 0.519519 CCTACTCTATCTCGCTGGCG 59.480 60.000 8.80 8.80 41.35 5.69
49 50 1.514003 CTACTCTATCTCGCTGGCGA 58.486 55.000 16.68 16.68 46.87 5.54
50 51 1.195900 CTACTCTATCTCGCTGGCGAC 59.804 57.143 13.78 0.00 44.01 5.19
51 52 1.284408 CTCTATCTCGCTGGCGACC 59.716 63.158 13.78 0.00 44.01 4.79
52 53 2.050895 CTATCTCGCTGGCGACCG 60.051 66.667 13.78 5.79 44.01 4.79
53 54 3.544167 CTATCTCGCTGGCGACCGG 62.544 68.421 13.78 0.00 44.01 5.28
60 61 4.680237 CTGGCGACCGGAGCAACA 62.680 66.667 23.36 14.26 36.08 3.33
61 62 4.980805 TGGCGACCGGAGCAACAC 62.981 66.667 23.36 10.19 36.08 3.32
62 63 4.681978 GGCGACCGGAGCAACACT 62.682 66.667 23.36 0.00 36.08 3.55
63 64 2.665185 GCGACCGGAGCAACACTT 60.665 61.111 9.46 0.00 34.19 3.16
64 65 2.668280 GCGACCGGAGCAACACTTC 61.668 63.158 9.46 0.00 34.19 3.01
69 70 4.285851 GGAGCAACACTTCGAGGG 57.714 61.111 0.00 0.00 0.00 4.30
70 71 1.376037 GGAGCAACACTTCGAGGGG 60.376 63.158 0.00 0.00 0.00 4.79
71 72 1.371558 GAGCAACACTTCGAGGGGT 59.628 57.895 0.00 0.00 0.00 4.95
72 73 0.951040 GAGCAACACTTCGAGGGGTG 60.951 60.000 2.00 8.35 39.97 4.61
73 74 3.655481 CAACACTTCGAGGGGTGC 58.345 61.111 2.00 0.00 36.99 5.01
74 75 1.227823 CAACACTTCGAGGGGTGCA 60.228 57.895 2.00 0.00 36.99 4.57
75 76 1.071471 AACACTTCGAGGGGTGCAG 59.929 57.895 2.00 0.00 36.99 4.41
76 77 2.743928 CACTTCGAGGGGTGCAGC 60.744 66.667 7.55 7.55 0.00 5.25
77 78 4.021925 ACTTCGAGGGGTGCAGCC 62.022 66.667 27.04 27.04 0.00 4.85
98 99 4.108902 CATCGGTCATGGACACGG 57.891 61.111 0.00 0.00 33.68 4.94
99 100 1.218047 CATCGGTCATGGACACGGT 59.782 57.895 0.00 0.00 33.68 4.83
100 101 1.083806 CATCGGTCATGGACACGGTG 61.084 60.000 6.58 6.58 33.72 4.94
101 102 2.238847 ATCGGTCATGGACACGGTGG 62.239 60.000 13.48 0.00 33.68 4.61
102 103 2.938086 CGGTCATGGACACGGTGGA 61.938 63.158 13.48 0.00 33.68 4.02
103 104 1.079127 GGTCATGGACACGGTGGAG 60.079 63.158 13.48 0.00 33.68 3.86
104 105 1.741770 GTCATGGACACGGTGGAGC 60.742 63.158 13.48 1.35 32.09 4.70
105 106 2.436646 CATGGACACGGTGGAGCC 60.437 66.667 13.48 11.00 0.00 4.70
121 122 2.441532 CCGGTCGAGCTCCCCTTA 60.442 66.667 13.48 0.00 0.00 2.69
122 123 2.056223 CCGGTCGAGCTCCCCTTAA 61.056 63.158 13.48 0.00 0.00 1.85
123 124 1.610554 CCGGTCGAGCTCCCCTTAAA 61.611 60.000 13.48 0.00 0.00 1.52
124 125 0.464452 CGGTCGAGCTCCCCTTAAAT 59.536 55.000 13.48 0.00 0.00 1.40
125 126 1.134491 CGGTCGAGCTCCCCTTAAATT 60.134 52.381 13.48 0.00 0.00 1.82
126 127 2.101917 CGGTCGAGCTCCCCTTAAATTA 59.898 50.000 13.48 0.00 0.00 1.40
127 128 3.729966 GGTCGAGCTCCCCTTAAATTAG 58.270 50.000 8.47 0.00 0.00 1.73
128 129 3.494573 GGTCGAGCTCCCCTTAAATTAGG 60.495 52.174 8.47 0.00 34.92 2.69
129 130 3.134262 GTCGAGCTCCCCTTAAATTAGGT 59.866 47.826 8.47 0.00 33.17 3.08
130 131 3.387050 TCGAGCTCCCCTTAAATTAGGTC 59.613 47.826 8.47 0.00 33.17 3.85
131 132 3.388350 CGAGCTCCCCTTAAATTAGGTCT 59.612 47.826 8.47 0.00 33.61 3.85
132 133 4.501743 CGAGCTCCCCTTAAATTAGGTCTC 60.502 50.000 8.47 0.00 33.61 3.36
133 134 4.371681 AGCTCCCCTTAAATTAGGTCTCA 58.628 43.478 0.00 0.00 33.17 3.27
134 135 4.164413 AGCTCCCCTTAAATTAGGTCTCAC 59.836 45.833 0.00 0.00 33.17 3.51
135 136 4.694339 CTCCCCTTAAATTAGGTCTCACG 58.306 47.826 0.00 0.00 33.17 4.35
136 137 4.098894 TCCCCTTAAATTAGGTCTCACGT 58.901 43.478 0.00 0.00 33.17 4.49
137 138 4.533311 TCCCCTTAAATTAGGTCTCACGTT 59.467 41.667 0.00 0.00 33.17 3.99
138 139 5.721000 TCCCCTTAAATTAGGTCTCACGTTA 59.279 40.000 0.00 0.00 33.17 3.18
139 140 5.814188 CCCCTTAAATTAGGTCTCACGTTAC 59.186 44.000 0.00 0.00 33.17 2.50
140 141 6.400568 CCCTTAAATTAGGTCTCACGTTACA 58.599 40.000 0.00 0.00 33.17 2.41
141 142 7.046033 CCCTTAAATTAGGTCTCACGTTACAT 58.954 38.462 0.00 0.00 33.17 2.29
142 143 7.011109 CCCTTAAATTAGGTCTCACGTTACATG 59.989 40.741 0.00 0.00 33.17 3.21
143 144 7.548075 CCTTAAATTAGGTCTCACGTTACATGT 59.452 37.037 2.69 2.69 0.00 3.21
144 145 9.577110 CTTAAATTAGGTCTCACGTTACATGTA 57.423 33.333 0.08 0.08 0.00 2.29
145 146 9.926158 TTAAATTAGGTCTCACGTTACATGTAA 57.074 29.630 14.35 14.35 0.00 2.41
148 149 9.745880 AATTAGGTCTCACGTTACATGTAATAG 57.254 33.333 20.72 18.67 0.00 1.73
149 150 6.770746 AGGTCTCACGTTACATGTAATAGT 57.229 37.500 20.72 19.25 0.00 2.12
150 151 7.870509 AGGTCTCACGTTACATGTAATAGTA 57.129 36.000 20.72 7.56 0.00 1.82
151 152 8.461249 AGGTCTCACGTTACATGTAATAGTAT 57.539 34.615 20.72 3.39 0.00 2.12
152 153 8.350722 AGGTCTCACGTTACATGTAATAGTATG 58.649 37.037 20.72 16.82 0.00 2.39
153 154 7.594015 GGTCTCACGTTACATGTAATAGTATGG 59.406 40.741 20.72 14.93 0.00 2.74
154 155 8.347771 GTCTCACGTTACATGTAATAGTATGGA 58.652 37.037 20.72 16.42 0.00 3.41
155 156 9.074576 TCTCACGTTACATGTAATAGTATGGAT 57.925 33.333 20.72 0.40 0.00 3.41
156 157 9.692749 CTCACGTTACATGTAATAGTATGGATT 57.307 33.333 20.72 0.00 0.00 3.01
164 165 9.632638 ACATGTAATAGTATGGATTTGAGCTTT 57.367 29.630 0.00 0.00 0.00 3.51
167 168 9.905713 TGTAATAGTATGGATTTGAGCTTTCTT 57.094 29.630 0.00 0.00 0.00 2.52
173 174 9.466497 AGTATGGATTTGAGCTTTCTTAATTGA 57.534 29.630 0.00 0.00 0.00 2.57
174 175 9.727627 GTATGGATTTGAGCTTTCTTAATTGAG 57.272 33.333 0.00 0.00 0.00 3.02
175 176 7.161773 TGGATTTGAGCTTTCTTAATTGAGG 57.838 36.000 0.00 0.00 0.00 3.86
176 177 6.721208 TGGATTTGAGCTTTCTTAATTGAGGT 59.279 34.615 0.00 0.00 0.00 3.85
177 178 7.888021 TGGATTTGAGCTTTCTTAATTGAGGTA 59.112 33.333 0.00 0.00 0.00 3.08
178 179 8.907885 GGATTTGAGCTTTCTTAATTGAGGTAT 58.092 33.333 0.00 0.00 0.00 2.73
179 180 9.943163 GATTTGAGCTTTCTTAATTGAGGTATC 57.057 33.333 0.00 0.00 0.00 2.24
180 181 7.865706 TTGAGCTTTCTTAATTGAGGTATCC 57.134 36.000 0.00 0.00 0.00 2.59
181 182 6.049149 TGAGCTTTCTTAATTGAGGTATCCG 58.951 40.000 0.00 0.00 0.00 4.18
182 183 5.990668 AGCTTTCTTAATTGAGGTATCCGT 58.009 37.500 0.00 0.00 0.00 4.69
183 184 5.817816 AGCTTTCTTAATTGAGGTATCCGTG 59.182 40.000 0.00 0.00 0.00 4.94
184 185 5.585047 GCTTTCTTAATTGAGGTATCCGTGT 59.415 40.000 0.00 0.00 0.00 4.49
185 186 6.456988 GCTTTCTTAATTGAGGTATCCGTGTG 60.457 42.308 0.00 0.00 0.00 3.82
186 187 5.018539 TCTTAATTGAGGTATCCGTGTGG 57.981 43.478 0.00 0.00 0.00 4.17
200 201 5.988310 TCCGTGTGGAAGAGACTATTTAA 57.012 39.130 0.00 0.00 42.85 1.52
201 202 5.962433 TCCGTGTGGAAGAGACTATTTAAG 58.038 41.667 0.00 0.00 42.85 1.85
202 203 5.105473 TCCGTGTGGAAGAGACTATTTAAGG 60.105 44.000 0.00 0.00 42.85 2.69
203 204 5.337330 CCGTGTGGAAGAGACTATTTAAGGT 60.337 44.000 0.00 0.00 37.49 3.50
204 205 5.577164 CGTGTGGAAGAGACTATTTAAGGTG 59.423 44.000 0.00 0.00 0.00 4.00
205 206 6.465084 GTGTGGAAGAGACTATTTAAGGTGT 58.535 40.000 0.00 0.00 0.00 4.16
206 207 6.369065 GTGTGGAAGAGACTATTTAAGGTGTG 59.631 42.308 0.00 0.00 0.00 3.82
207 208 6.269077 TGTGGAAGAGACTATTTAAGGTGTGA 59.731 38.462 0.00 0.00 0.00 3.58
208 209 6.590677 GTGGAAGAGACTATTTAAGGTGTGAC 59.409 42.308 0.00 0.00 0.00 3.67
209 210 6.107343 GGAAGAGACTATTTAAGGTGTGACC 58.893 44.000 0.00 0.00 38.99 4.02
210 211 5.326200 AGAGACTATTTAAGGTGTGACCG 57.674 43.478 0.00 0.00 44.90 4.79
211 212 4.159879 AGAGACTATTTAAGGTGTGACCGG 59.840 45.833 0.00 0.00 44.90 5.28
212 213 3.836562 AGACTATTTAAGGTGTGACCGGT 59.163 43.478 6.92 6.92 44.90 5.28
213 214 4.081807 AGACTATTTAAGGTGTGACCGGTC 60.082 45.833 28.17 28.17 44.90 4.79
214 215 3.579586 ACTATTTAAGGTGTGACCGGTCA 59.420 43.478 33.23 33.23 44.90 4.02
215 216 3.713826 ATTTAAGGTGTGACCGGTCAT 57.286 42.857 38.11 24.69 44.90 3.06
216 217 2.465860 TTAAGGTGTGACCGGTCATG 57.534 50.000 38.11 0.00 44.90 3.07
217 218 1.344065 TAAGGTGTGACCGGTCATGT 58.656 50.000 38.11 22.90 44.90 3.21
218 219 0.250295 AAGGTGTGACCGGTCATGTG 60.250 55.000 38.11 0.00 44.90 3.21
219 220 1.070786 GGTGTGACCGGTCATGTGT 59.929 57.895 38.11 0.00 42.18 3.72
220 221 0.949105 GGTGTGACCGGTCATGTGTC 60.949 60.000 38.11 25.19 42.18 3.67
221 222 0.949105 GTGTGACCGGTCATGTGTCC 60.949 60.000 38.11 24.49 42.18 4.02
222 223 1.736645 GTGACCGGTCATGTGTCCG 60.737 63.158 38.11 10.96 44.31 4.79
223 224 2.813908 GACCGGTCATGTGTCCGC 60.814 66.667 29.75 0.00 43.57 5.54
224 225 4.735132 ACCGGTCATGTGTCCGCG 62.735 66.667 0.00 0.00 43.57 6.46
226 227 4.429212 CGGTCATGTGTCCGCGGA 62.429 66.667 27.28 27.28 39.56 5.54
227 228 2.813908 GGTCATGTGTCCGCGGAC 60.814 66.667 43.88 43.88 44.77 4.79
245 246 2.097728 GCTTCCGGCGTTTTAGCG 59.902 61.111 6.01 0.00 38.18 4.26
246 247 2.782615 CTTCCGGCGTTTTAGCGG 59.217 61.111 6.01 0.00 38.18 5.52
247 248 2.030862 TTCCGGCGTTTTAGCGGT 59.969 55.556 6.01 0.00 38.18 5.68
248 249 1.963190 CTTCCGGCGTTTTAGCGGTC 61.963 60.000 6.01 0.00 38.18 4.79
249 250 2.712325 TTCCGGCGTTTTAGCGGTCA 62.712 55.000 6.01 0.00 38.18 4.02
250 251 2.736682 CCGGCGTTTTAGCGGTCAG 61.737 63.158 6.01 0.00 38.18 3.51
251 252 1.735198 CGGCGTTTTAGCGGTCAGA 60.735 57.895 0.00 0.00 38.18 3.27
252 253 1.082117 CGGCGTTTTAGCGGTCAGAT 61.082 55.000 0.00 0.00 38.18 2.90
253 254 1.084289 GGCGTTTTAGCGGTCAGATT 58.916 50.000 0.00 0.00 38.18 2.40
254 255 1.467342 GGCGTTTTAGCGGTCAGATTT 59.533 47.619 0.00 0.00 38.18 2.17
255 256 2.505866 GCGTTTTAGCGGTCAGATTTG 58.494 47.619 0.00 0.00 0.00 2.32
256 257 2.505866 CGTTTTAGCGGTCAGATTTGC 58.494 47.619 0.00 0.00 0.00 3.68
257 258 2.159627 CGTTTTAGCGGTCAGATTTGCT 59.840 45.455 0.00 0.00 41.32 3.91
258 259 3.492313 GTTTTAGCGGTCAGATTTGCTG 58.508 45.455 0.00 0.00 46.31 4.41
259 260 2.472695 TTAGCGGTCAGATTTGCTGT 57.527 45.000 0.00 0.00 45.14 4.40
260 261 3.603158 TTAGCGGTCAGATTTGCTGTA 57.397 42.857 0.00 0.00 45.14 2.74
261 262 1.726853 AGCGGTCAGATTTGCTGTAC 58.273 50.000 0.00 0.00 45.14 2.90
262 263 0.727398 GCGGTCAGATTTGCTGTACC 59.273 55.000 0.00 0.00 45.14 3.34
263 264 1.369625 CGGTCAGATTTGCTGTACCC 58.630 55.000 0.00 0.00 45.14 3.69
264 265 1.369625 GGTCAGATTTGCTGTACCCG 58.630 55.000 0.00 0.00 45.14 5.28
265 266 1.369625 GTCAGATTTGCTGTACCCGG 58.630 55.000 0.00 0.00 45.14 5.73
266 267 0.392461 TCAGATTTGCTGTACCCGGC 60.392 55.000 0.00 0.00 45.14 6.13
267 268 0.392998 CAGATTTGCTGTACCCGGCT 60.393 55.000 0.00 0.00 43.76 5.52
268 269 0.392998 AGATTTGCTGTACCCGGCTG 60.393 55.000 0.00 0.00 43.76 4.85
269 270 0.676782 GATTTGCTGTACCCGGCTGT 60.677 55.000 0.00 0.00 43.76 4.40
270 271 0.616371 ATTTGCTGTACCCGGCTGTA 59.384 50.000 0.00 0.00 43.76 2.74
271 272 0.036765 TTTGCTGTACCCGGCTGTAG 60.037 55.000 0.00 0.00 43.76 2.74
272 273 0.901114 TTGCTGTACCCGGCTGTAGA 60.901 55.000 0.00 0.00 43.76 2.59
273 274 0.686441 TGCTGTACCCGGCTGTAGAT 60.686 55.000 0.00 0.00 43.76 1.98
274 275 0.249489 GCTGTACCCGGCTGTAGATG 60.249 60.000 0.00 0.00 40.01 2.90
275 276 0.249489 CTGTACCCGGCTGTAGATGC 60.249 60.000 0.00 0.00 0.00 3.91
276 277 0.686441 TGTACCCGGCTGTAGATGCT 60.686 55.000 0.00 0.00 0.00 3.79
277 278 0.032267 GTACCCGGCTGTAGATGCTC 59.968 60.000 0.00 0.00 0.00 4.26
278 279 0.106167 TACCCGGCTGTAGATGCTCT 60.106 55.000 0.00 0.00 0.00 4.09
279 280 0.106167 ACCCGGCTGTAGATGCTCTA 60.106 55.000 0.00 0.00 0.00 2.43
280 281 1.040646 CCCGGCTGTAGATGCTCTAA 58.959 55.000 0.00 0.00 29.58 2.10
281 282 1.620819 CCCGGCTGTAGATGCTCTAAT 59.379 52.381 0.00 0.00 29.58 1.73
282 283 2.826128 CCCGGCTGTAGATGCTCTAATA 59.174 50.000 0.00 0.00 29.58 0.98
283 284 3.449018 CCCGGCTGTAGATGCTCTAATAT 59.551 47.826 0.00 0.00 29.58 1.28
284 285 4.645136 CCCGGCTGTAGATGCTCTAATATA 59.355 45.833 0.00 0.00 29.58 0.86
285 286 5.127194 CCCGGCTGTAGATGCTCTAATATAA 59.873 44.000 0.00 0.00 29.58 0.98
286 287 6.183360 CCCGGCTGTAGATGCTCTAATATAAT 60.183 42.308 0.00 0.00 29.58 1.28
287 288 6.699204 CCGGCTGTAGATGCTCTAATATAATG 59.301 42.308 0.00 0.00 29.58 1.90
288 289 7.416777 CCGGCTGTAGATGCTCTAATATAATGA 60.417 40.741 0.00 0.00 29.58 2.57
289 290 7.976175 CGGCTGTAGATGCTCTAATATAATGAA 59.024 37.037 0.00 0.00 29.58 2.57
290 291 9.658799 GGCTGTAGATGCTCTAATATAATGAAA 57.341 33.333 0.00 0.00 29.58 2.69
318 319 9.677567 TCTGAAAAATTTTAGATGAACTTTCCG 57.322 29.630 3.34 0.00 29.19 4.30
319 320 8.810652 TGAAAAATTTTAGATGAACTTTCCGG 57.189 30.769 3.34 0.00 0.00 5.14
320 321 8.634444 TGAAAAATTTTAGATGAACTTTCCGGA 58.366 29.630 0.00 0.00 0.00 5.14
321 322 9.129209 GAAAAATTTTAGATGAACTTTCCGGAG 57.871 33.333 3.34 0.00 0.00 4.63
335 336 3.016997 CGGAGGGAGTATGTAGCGA 57.983 57.895 0.00 0.00 0.00 4.93
336 337 1.315690 CGGAGGGAGTATGTAGCGAA 58.684 55.000 0.00 0.00 0.00 4.70
337 338 1.001597 CGGAGGGAGTATGTAGCGAAC 60.002 57.143 0.00 0.00 0.00 3.95
338 339 1.001597 GGAGGGAGTATGTAGCGAACG 60.002 57.143 0.00 0.00 0.00 3.95
339 340 1.945394 GAGGGAGTATGTAGCGAACGA 59.055 52.381 0.00 0.00 0.00 3.85
340 341 2.357009 GAGGGAGTATGTAGCGAACGAA 59.643 50.000 0.00 0.00 0.00 3.85
341 342 2.957006 AGGGAGTATGTAGCGAACGAAT 59.043 45.455 0.00 0.00 0.00 3.34
342 343 3.004524 AGGGAGTATGTAGCGAACGAATC 59.995 47.826 0.00 0.00 0.00 2.52
351 352 2.441023 CGAACGAATCGTCTTGCCA 58.559 52.632 9.32 0.00 46.52 4.92
352 353 0.787787 CGAACGAATCGTCTTGCCAA 59.212 50.000 9.32 0.00 46.52 4.52
353 354 1.393539 CGAACGAATCGTCTTGCCAAT 59.606 47.619 9.32 0.00 46.52 3.16
354 355 2.159707 CGAACGAATCGTCTTGCCAATT 60.160 45.455 9.32 0.00 46.52 2.32
355 356 3.061563 CGAACGAATCGTCTTGCCAATTA 59.938 43.478 9.32 0.00 46.52 1.40
356 357 4.434989 CGAACGAATCGTCTTGCCAATTAA 60.435 41.667 9.32 0.00 46.52 1.40
357 358 4.336532 ACGAATCGTCTTGCCAATTAAC 57.663 40.909 0.96 0.00 33.69 2.01
358 359 4.000988 ACGAATCGTCTTGCCAATTAACT 58.999 39.130 0.96 0.00 33.69 2.24
359 360 4.092968 ACGAATCGTCTTGCCAATTAACTC 59.907 41.667 0.96 0.00 33.69 3.01
360 361 4.494199 CGAATCGTCTTGCCAATTAACTCC 60.494 45.833 0.00 0.00 0.00 3.85
361 362 2.706890 TCGTCTTGCCAATTAACTCCC 58.293 47.619 0.00 0.00 0.00 4.30
362 363 2.304761 TCGTCTTGCCAATTAACTCCCT 59.695 45.455 0.00 0.00 0.00 4.20
363 364 2.678336 CGTCTTGCCAATTAACTCCCTC 59.322 50.000 0.00 0.00 0.00 4.30
364 365 3.017442 GTCTTGCCAATTAACTCCCTCC 58.983 50.000 0.00 0.00 0.00 4.30
365 366 2.025321 TCTTGCCAATTAACTCCCTCCC 60.025 50.000 0.00 0.00 0.00 4.30
366 367 0.254747 TGCCAATTAACTCCCTCCCG 59.745 55.000 0.00 0.00 0.00 5.14
367 368 0.544697 GCCAATTAACTCCCTCCCGA 59.455 55.000 0.00 0.00 0.00 5.14
368 369 1.143073 GCCAATTAACTCCCTCCCGAT 59.857 52.381 0.00 0.00 0.00 4.18
369 370 2.810767 GCCAATTAACTCCCTCCCGATC 60.811 54.545 0.00 0.00 0.00 3.69
370 371 2.548067 CCAATTAACTCCCTCCCGATCG 60.548 54.545 8.51 8.51 0.00 3.69
371 372 2.364324 CAATTAACTCCCTCCCGATCGA 59.636 50.000 18.66 0.00 0.00 3.59
372 373 1.688772 TTAACTCCCTCCCGATCGAG 58.311 55.000 18.66 2.49 0.00 4.04
373 374 0.841961 TAACTCCCTCCCGATCGAGA 59.158 55.000 18.66 8.18 30.97 4.04
374 375 0.186386 AACTCCCTCCCGATCGAGAT 59.814 55.000 18.66 0.00 30.97 2.75
375 376 0.538516 ACTCCCTCCCGATCGAGATG 60.539 60.000 18.66 5.73 30.97 2.90
376 377 0.538516 CTCCCTCCCGATCGAGATGT 60.539 60.000 18.66 0.00 30.97 3.06
377 378 0.106167 TCCCTCCCGATCGAGATGTT 60.106 55.000 18.66 0.00 30.97 2.71
378 379 0.032678 CCCTCCCGATCGAGATGTTG 59.967 60.000 18.66 0.00 30.97 3.33
379 380 1.032794 CCTCCCGATCGAGATGTTGA 58.967 55.000 18.66 0.51 30.97 3.18
380 381 1.409064 CCTCCCGATCGAGATGTTGAA 59.591 52.381 18.66 0.00 30.97 2.69
381 382 2.159099 CCTCCCGATCGAGATGTTGAAA 60.159 50.000 18.66 0.00 30.97 2.69
382 383 2.860735 CTCCCGATCGAGATGTTGAAAC 59.139 50.000 18.66 0.00 30.97 2.78
383 384 2.496070 TCCCGATCGAGATGTTGAAACT 59.504 45.455 18.66 0.00 0.00 2.66
384 385 3.697542 TCCCGATCGAGATGTTGAAACTA 59.302 43.478 18.66 0.00 0.00 2.24
385 386 4.045104 CCCGATCGAGATGTTGAAACTAG 58.955 47.826 18.66 0.00 0.00 2.57
386 387 3.487574 CCGATCGAGATGTTGAAACTAGC 59.512 47.826 18.66 0.00 0.00 3.42
387 388 4.105486 CGATCGAGATGTTGAAACTAGCA 58.895 43.478 10.26 0.00 0.00 3.49
388 389 4.562789 CGATCGAGATGTTGAAACTAGCAA 59.437 41.667 10.26 0.00 0.00 3.91
389 390 5.062183 CGATCGAGATGTTGAAACTAGCAAA 59.938 40.000 10.26 0.00 0.00 3.68
390 391 5.845985 TCGAGATGTTGAAACTAGCAAAG 57.154 39.130 0.00 0.00 0.00 2.77
391 392 4.152402 TCGAGATGTTGAAACTAGCAAAGC 59.848 41.667 0.00 0.00 0.00 3.51
392 393 4.153117 CGAGATGTTGAAACTAGCAAAGCT 59.847 41.667 0.00 0.00 43.41 3.74
393 394 5.348724 CGAGATGTTGAAACTAGCAAAGCTA 59.651 40.000 0.00 0.00 40.44 3.32
394 395 6.036517 CGAGATGTTGAAACTAGCAAAGCTAT 59.963 38.462 0.00 0.00 40.54 2.97
395 396 7.313951 AGATGTTGAAACTAGCAAAGCTATC 57.686 36.000 0.00 0.00 40.54 2.08
396 397 5.880054 TGTTGAAACTAGCAAAGCTATCC 57.120 39.130 0.00 0.00 40.54 2.59
397 398 4.700213 TGTTGAAACTAGCAAAGCTATCCC 59.300 41.667 0.00 0.00 40.54 3.85
398 399 3.531538 TGAAACTAGCAAAGCTATCCCG 58.468 45.455 0.00 0.00 40.54 5.14
399 400 3.196901 TGAAACTAGCAAAGCTATCCCGA 59.803 43.478 0.00 0.00 40.54 5.14
400 401 3.906720 AACTAGCAAAGCTATCCCGAA 57.093 42.857 0.00 0.00 40.54 4.30
401 402 4.423625 AACTAGCAAAGCTATCCCGAAT 57.576 40.909 0.00 0.00 40.54 3.34
402 403 3.996480 ACTAGCAAAGCTATCCCGAATC 58.004 45.455 0.00 0.00 40.54 2.52
403 404 2.262423 AGCAAAGCTATCCCGAATCC 57.738 50.000 0.00 0.00 36.99 3.01
404 405 1.202818 AGCAAAGCTATCCCGAATCCC 60.203 52.381 0.00 0.00 36.99 3.85
405 406 1.202818 GCAAAGCTATCCCGAATCCCT 60.203 52.381 0.00 0.00 0.00 4.20
406 407 2.038557 GCAAAGCTATCCCGAATCCCTA 59.961 50.000 0.00 0.00 0.00 3.53
407 408 3.866449 GCAAAGCTATCCCGAATCCCTAG 60.866 52.174 0.00 0.00 0.00 3.02
408 409 3.544698 AAGCTATCCCGAATCCCTAGA 57.455 47.619 0.00 0.00 0.00 2.43
409 410 3.544698 AGCTATCCCGAATCCCTAGAA 57.455 47.619 0.00 0.00 0.00 2.10
410 411 3.858135 AGCTATCCCGAATCCCTAGAAA 58.142 45.455 0.00 0.00 0.00 2.52
411 412 4.232091 AGCTATCCCGAATCCCTAGAAAA 58.768 43.478 0.00 0.00 0.00 2.29
412 413 4.658901 AGCTATCCCGAATCCCTAGAAAAA 59.341 41.667 0.00 0.00 0.00 1.94
448 449 2.507407 AAAAAGGCAAGCTATCCCGA 57.493 45.000 0.00 0.00 0.00 5.14
449 450 2.507407 AAAAGGCAAGCTATCCCGAA 57.493 45.000 0.00 0.00 0.00 4.30
450 451 2.044123 AAAGGCAAGCTATCCCGAAG 57.956 50.000 0.00 0.00 0.00 3.79
485 486 4.832608 GGACCGTGCCCACCGATC 62.833 72.222 0.00 0.00 0.00 3.69
490 491 2.746277 GTGCCCACCGATCGCTTT 60.746 61.111 10.32 0.00 0.00 3.51
491 492 2.745884 TGCCCACCGATCGCTTTG 60.746 61.111 10.32 6.12 0.00 2.77
492 493 2.746277 GCCCACCGATCGCTTTGT 60.746 61.111 10.32 0.00 0.00 2.83
493 494 1.448893 GCCCACCGATCGCTTTGTA 60.449 57.895 10.32 0.00 0.00 2.41
494 495 0.814010 GCCCACCGATCGCTTTGTAT 60.814 55.000 10.32 0.00 0.00 2.29
495 496 1.217882 CCCACCGATCGCTTTGTATC 58.782 55.000 10.32 0.00 0.00 2.24
496 497 0.852777 CCACCGATCGCTTTGTATCG 59.147 55.000 10.32 0.00 43.53 2.92
497 498 1.535226 CCACCGATCGCTTTGTATCGA 60.535 52.381 10.32 0.00 46.08 3.59
498 499 1.517276 CACCGATCGCTTTGTATCGAC 59.483 52.381 10.32 0.00 46.08 4.20
499 500 0.770590 CCGATCGCTTTGTATCGACG 59.229 55.000 10.32 0.00 46.08 5.12
500 501 0.770590 CGATCGCTTTGTATCGACGG 59.229 55.000 0.26 0.00 46.08 4.79
501 502 1.836383 GATCGCTTTGTATCGACGGT 58.164 50.000 0.00 0.00 37.55 4.83
502 503 1.517276 GATCGCTTTGTATCGACGGTG 59.483 52.381 0.00 0.00 37.55 4.94
503 504 0.241749 TCGCTTTGTATCGACGGTGT 59.758 50.000 0.00 0.00 0.00 4.16
504 505 1.468127 TCGCTTTGTATCGACGGTGTA 59.532 47.619 0.00 0.00 0.00 2.90
505 506 1.844357 CGCTTTGTATCGACGGTGTAG 59.156 52.381 0.00 0.00 0.00 2.74
506 507 1.587034 GCTTTGTATCGACGGTGTAGC 59.413 52.381 0.00 0.00 0.00 3.58
507 508 1.844357 CTTTGTATCGACGGTGTAGCG 59.156 52.381 1.52 1.52 0.00 4.26
508 509 0.523968 TTGTATCGACGGTGTAGCGC 60.524 55.000 0.00 0.00 0.00 5.92
509 510 1.063006 GTATCGACGGTGTAGCGCA 59.937 57.895 11.47 0.00 0.00 6.09
510 511 1.063006 TATCGACGGTGTAGCGCAC 59.937 57.895 11.47 6.60 46.97 5.34
623 629 6.363882 TGATAAGTGCATGGGATAATGTTCA 58.636 36.000 0.00 0.00 0.00 3.18
630 636 2.364632 TGGGATAATGTTCAAGCCACG 58.635 47.619 0.00 0.00 0.00 4.94
704 712 5.108854 CGCGACACAATATTTACTACGAGTC 60.109 44.000 0.00 0.00 0.00 3.36
714 726 4.946784 TTACTACGAGTCGGTTTCCTAC 57.053 45.455 18.30 0.00 0.00 3.18
743 755 3.003793 TGCAGAATCTACGGATCGAGAAG 59.996 47.826 0.00 0.00 0.00 2.85
779 791 3.380954 AGTCGGTTTCCTTAGCTAGCTAC 59.619 47.826 24.09 13.83 0.00 3.58
780 792 3.380954 GTCGGTTTCCTTAGCTAGCTACT 59.619 47.826 24.09 1.57 0.00 2.57
781 793 3.631227 TCGGTTTCCTTAGCTAGCTACTC 59.369 47.826 24.09 10.32 0.00 2.59
803 815 1.298157 TATGAACCGGTCGTCGTCGT 61.298 55.000 8.04 5.22 38.33 4.34
840 852 0.667993 CACCAACGCATGACCAAACT 59.332 50.000 0.00 0.00 0.00 2.66
1077 1097 3.845259 GCGTGCATCCCGAGGGTA 61.845 66.667 8.20 0.00 36.47 3.69
1206 1361 4.853924 ATATCCATGCATTCCGTTTTCC 57.146 40.909 0.00 0.00 0.00 3.13
1390 1559 4.063689 CGTACTACGTCTACTCCATCCAT 58.936 47.826 0.00 0.00 36.74 3.41
1405 1574 6.085555 TCCATCCATGTCGTTTACTAGATC 57.914 41.667 0.00 0.00 0.00 2.75
1406 1575 5.833667 TCCATCCATGTCGTTTACTAGATCT 59.166 40.000 0.00 0.00 0.00 2.75
1407 1576 5.923114 CCATCCATGTCGTTTACTAGATCTG 59.077 44.000 5.18 0.00 0.00 2.90
1479 1648 0.990374 AGATCAAGTGCCAGAAGCCT 59.010 50.000 0.00 0.00 42.71 4.58
1958 2127 0.109412 GACACCGTCTACCCGTCAAG 60.109 60.000 0.00 0.00 0.00 3.02
2336 2517 1.861982 TTGAGCTACACCCCTACCTC 58.138 55.000 0.00 0.00 0.00 3.85
2422 2607 2.649331 TGAAGCCGCAACTACTACTC 57.351 50.000 0.00 0.00 0.00 2.59
2436 2745 5.314529 ACTACTACTCTGTAGCTGTGTTCA 58.685 41.667 0.00 0.00 42.53 3.18
2466 2775 2.489971 CGGCAAACACTAACCTTCTCA 58.510 47.619 0.00 0.00 0.00 3.27
2467 2776 3.074412 CGGCAAACACTAACCTTCTCAT 58.926 45.455 0.00 0.00 0.00 2.90
2468 2777 4.250464 CGGCAAACACTAACCTTCTCATA 58.750 43.478 0.00 0.00 0.00 2.15
2559 3051 0.341609 CCTCTCCTCTTCCCCCTCTT 59.658 60.000 0.00 0.00 0.00 2.85
2566 3058 2.893489 CCTCTTCCCCCTCTTTGTTTTG 59.107 50.000 0.00 0.00 0.00 2.44
2607 3100 9.231297 CATCTCTGATTTTTCCCACTAGTTTTA 57.769 33.333 0.00 0.00 0.00 1.52
2669 3162 7.518161 TGAAATCGTGTCTTATTTAGCAAGTG 58.482 34.615 0.00 0.00 0.00 3.16
2674 3167 8.181487 TCGTGTCTTATTTAGCAAGTGAATAC 57.819 34.615 0.00 0.00 0.00 1.89
2676 3169 7.201410 CGTGTCTTATTTAGCAAGTGAATACGT 60.201 37.037 0.00 0.00 0.00 3.57
2677 3170 7.898309 GTGTCTTATTTAGCAAGTGAATACGTG 59.102 37.037 0.00 0.00 38.99 4.49
2804 3298 9.814507 CTATAGAAGTATAGCGTTGTAGACAAG 57.185 37.037 0.00 0.00 33.42 3.16
2862 3356 6.183361 TGACCAAGAACTTCCTATCACTTGAA 60.183 38.462 0.00 0.00 37.49 2.69
2880 3374 2.573009 TGAACATCTCCAATCAGCCTCA 59.427 45.455 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.754323 CGAGATAGAGTAGGACATGGGAC 59.246 52.174 0.00 0.00 0.00 4.46
21 22 3.811098 GCGAGATAGAGTAGGACATGGGA 60.811 52.174 0.00 0.00 0.00 4.37
22 23 2.490115 GCGAGATAGAGTAGGACATGGG 59.510 54.545 0.00 0.00 0.00 4.00
23 24 3.190327 CAGCGAGATAGAGTAGGACATGG 59.810 52.174 0.00 0.00 0.00 3.66
24 25 3.190327 CCAGCGAGATAGAGTAGGACATG 59.810 52.174 0.00 0.00 0.00 3.21
25 26 3.417101 CCAGCGAGATAGAGTAGGACAT 58.583 50.000 0.00 0.00 0.00 3.06
26 27 2.852449 CCAGCGAGATAGAGTAGGACA 58.148 52.381 0.00 0.00 0.00 4.02
27 28 1.538075 GCCAGCGAGATAGAGTAGGAC 59.462 57.143 0.00 0.00 0.00 3.85
28 29 1.878525 CGCCAGCGAGATAGAGTAGGA 60.879 57.143 6.06 0.00 42.83 2.94
29 30 0.519519 CGCCAGCGAGATAGAGTAGG 59.480 60.000 6.06 0.00 42.83 3.18
30 31 1.514003 TCGCCAGCGAGATAGAGTAG 58.486 55.000 11.27 0.00 44.01 2.57
31 32 3.700198 TCGCCAGCGAGATAGAGTA 57.300 52.632 11.27 0.00 44.01 2.59
32 33 4.561452 TCGCCAGCGAGATAGAGT 57.439 55.556 11.27 0.00 44.01 3.24
43 44 4.680237 TGTTGCTCCGGTCGCCAG 62.680 66.667 14.26 0.00 0.00 4.85
44 45 4.980805 GTGTTGCTCCGGTCGCCA 62.981 66.667 14.26 2.63 0.00 5.69
45 46 4.681978 AGTGTTGCTCCGGTCGCC 62.682 66.667 14.26 2.84 0.00 5.54
46 47 2.665185 AAGTGTTGCTCCGGTCGC 60.665 61.111 0.00 6.43 0.00 5.19
47 48 2.372690 CGAAGTGTTGCTCCGGTCG 61.373 63.158 0.00 0.00 0.00 4.79
48 49 1.006571 TCGAAGTGTTGCTCCGGTC 60.007 57.895 0.00 0.00 0.00 4.79
49 50 1.006102 CTCGAAGTGTTGCTCCGGT 60.006 57.895 0.00 0.00 0.00 5.28
50 51 1.738099 CCTCGAAGTGTTGCTCCGG 60.738 63.158 0.00 0.00 0.00 5.14
51 52 1.738099 CCCTCGAAGTGTTGCTCCG 60.738 63.158 0.00 0.00 0.00 4.63
52 53 1.376037 CCCCTCGAAGTGTTGCTCC 60.376 63.158 0.00 0.00 0.00 4.70
53 54 0.951040 CACCCCTCGAAGTGTTGCTC 60.951 60.000 2.54 0.00 0.00 4.26
54 55 1.071471 CACCCCTCGAAGTGTTGCT 59.929 57.895 2.54 0.00 0.00 3.91
55 56 2.617274 GCACCCCTCGAAGTGTTGC 61.617 63.158 10.52 1.83 36.35 4.17
56 57 1.227823 TGCACCCCTCGAAGTGTTG 60.228 57.895 10.52 0.00 36.35 3.33
57 58 1.071471 CTGCACCCCTCGAAGTGTT 59.929 57.895 10.52 0.00 36.35 3.32
58 59 2.743718 CTGCACCCCTCGAAGTGT 59.256 61.111 10.52 0.00 36.35 3.55
59 60 2.743928 GCTGCACCCCTCGAAGTG 60.744 66.667 0.00 5.72 37.05 3.16
60 61 4.021925 GGCTGCACCCCTCGAAGT 62.022 66.667 0.50 0.00 0.00 3.01
81 82 1.083806 CACCGTGTCCATGACCGATG 61.084 60.000 0.00 0.00 31.51 3.84
82 83 1.218047 CACCGTGTCCATGACCGAT 59.782 57.895 0.00 0.00 31.51 4.18
83 84 2.654289 CACCGTGTCCATGACCGA 59.346 61.111 0.00 0.00 31.51 4.69
84 85 2.434185 CCACCGTGTCCATGACCG 60.434 66.667 0.00 0.00 0.00 4.79
85 86 1.079127 CTCCACCGTGTCCATGACC 60.079 63.158 0.00 0.00 0.00 4.02
86 87 1.741770 GCTCCACCGTGTCCATGAC 60.742 63.158 0.00 0.00 0.00 3.06
87 88 2.662596 GCTCCACCGTGTCCATGA 59.337 61.111 0.00 0.00 0.00 3.07
88 89 2.436646 GGCTCCACCGTGTCCATG 60.437 66.667 0.00 0.00 0.00 3.66
104 105 1.610554 TTTAAGGGGAGCTCGACCGG 61.611 60.000 17.36 0.00 0.00 5.28
105 106 0.464452 ATTTAAGGGGAGCTCGACCG 59.536 55.000 17.36 0.00 0.00 4.79
106 107 2.711978 AATTTAAGGGGAGCTCGACC 57.288 50.000 16.09 16.09 0.00 4.79
107 108 3.134262 ACCTAATTTAAGGGGAGCTCGAC 59.866 47.826 7.83 2.83 41.32 4.20
108 109 3.381335 ACCTAATTTAAGGGGAGCTCGA 58.619 45.455 7.83 0.00 41.32 4.04
109 110 3.388350 AGACCTAATTTAAGGGGAGCTCG 59.612 47.826 7.83 0.00 41.32 5.03
110 111 4.409247 TGAGACCTAATTTAAGGGGAGCTC 59.591 45.833 4.71 4.71 41.32 4.09
111 112 4.164413 GTGAGACCTAATTTAAGGGGAGCT 59.836 45.833 0.00 0.00 41.32 4.09
112 113 4.452825 GTGAGACCTAATTTAAGGGGAGC 58.547 47.826 0.00 0.00 41.32 4.70
113 114 4.161754 ACGTGAGACCTAATTTAAGGGGAG 59.838 45.833 0.00 0.00 41.32 4.30
114 115 4.098894 ACGTGAGACCTAATTTAAGGGGA 58.901 43.478 0.00 0.00 41.32 4.81
115 116 4.482952 ACGTGAGACCTAATTTAAGGGG 57.517 45.455 0.00 0.00 41.32 4.79
116 117 6.400568 TGTAACGTGAGACCTAATTTAAGGG 58.599 40.000 0.00 0.00 41.32 3.95
117 118 7.548075 ACATGTAACGTGAGACCTAATTTAAGG 59.452 37.037 0.00 0.00 42.82 2.69
118 119 8.475331 ACATGTAACGTGAGACCTAATTTAAG 57.525 34.615 0.00 0.00 0.00 1.85
119 120 9.926158 TTACATGTAACGTGAGACCTAATTTAA 57.074 29.630 14.35 0.00 0.00 1.52
122 123 9.745880 CTATTACATGTAACGTGAGACCTAATT 57.254 33.333 20.26 2.50 0.00 1.40
123 124 8.910944 ACTATTACATGTAACGTGAGACCTAAT 58.089 33.333 20.26 3.89 0.00 1.73
124 125 8.284945 ACTATTACATGTAACGTGAGACCTAA 57.715 34.615 20.26 0.00 0.00 2.69
125 126 7.870509 ACTATTACATGTAACGTGAGACCTA 57.129 36.000 20.26 5.23 0.00 3.08
126 127 6.770746 ACTATTACATGTAACGTGAGACCT 57.229 37.500 20.26 4.31 0.00 3.85
127 128 7.594015 CCATACTATTACATGTAACGTGAGACC 59.406 40.741 20.26 0.00 0.00 3.85
128 129 8.347771 TCCATACTATTACATGTAACGTGAGAC 58.652 37.037 20.26 0.00 0.00 3.36
129 130 8.454570 TCCATACTATTACATGTAACGTGAGA 57.545 34.615 20.26 14.08 0.00 3.27
130 131 9.692749 AATCCATACTATTACATGTAACGTGAG 57.307 33.333 20.26 15.99 0.00 3.51
138 139 9.632638 AAAGCTCAAATCCATACTATTACATGT 57.367 29.630 2.69 2.69 0.00 3.21
141 142 9.905713 AAGAAAGCTCAAATCCATACTATTACA 57.094 29.630 0.00 0.00 0.00 2.41
147 148 9.466497 TCAATTAAGAAAGCTCAAATCCATACT 57.534 29.630 0.00 0.00 0.00 2.12
148 149 9.727627 CTCAATTAAGAAAGCTCAAATCCATAC 57.272 33.333 0.00 0.00 0.00 2.39
149 150 8.906867 CCTCAATTAAGAAAGCTCAAATCCATA 58.093 33.333 0.00 0.00 0.00 2.74
150 151 7.398332 ACCTCAATTAAGAAAGCTCAAATCCAT 59.602 33.333 0.00 0.00 0.00 3.41
151 152 6.721208 ACCTCAATTAAGAAAGCTCAAATCCA 59.279 34.615 0.00 0.00 0.00 3.41
152 153 7.163001 ACCTCAATTAAGAAAGCTCAAATCC 57.837 36.000 0.00 0.00 0.00 3.01
153 154 9.943163 GATACCTCAATTAAGAAAGCTCAAATC 57.057 33.333 0.00 0.00 0.00 2.17
154 155 8.907885 GGATACCTCAATTAAGAAAGCTCAAAT 58.092 33.333 0.00 0.00 0.00 2.32
155 156 7.065803 CGGATACCTCAATTAAGAAAGCTCAAA 59.934 37.037 0.00 0.00 0.00 2.69
156 157 6.538742 CGGATACCTCAATTAAGAAAGCTCAA 59.461 38.462 0.00 0.00 0.00 3.02
157 158 6.049149 CGGATACCTCAATTAAGAAAGCTCA 58.951 40.000 0.00 0.00 0.00 4.26
158 159 6.018669 CACGGATACCTCAATTAAGAAAGCTC 60.019 42.308 0.00 0.00 0.00 4.09
159 160 5.817816 CACGGATACCTCAATTAAGAAAGCT 59.182 40.000 0.00 0.00 0.00 3.74
160 161 5.585047 ACACGGATACCTCAATTAAGAAAGC 59.415 40.000 0.00 0.00 0.00 3.51
161 162 6.037172 CCACACGGATACCTCAATTAAGAAAG 59.963 42.308 0.00 0.00 0.00 2.62
162 163 5.878116 CCACACGGATACCTCAATTAAGAAA 59.122 40.000 0.00 0.00 0.00 2.52
163 164 5.188163 TCCACACGGATACCTCAATTAAGAA 59.812 40.000 0.00 0.00 35.91 2.52
164 165 4.712829 TCCACACGGATACCTCAATTAAGA 59.287 41.667 0.00 0.00 35.91 2.10
165 166 5.018539 TCCACACGGATACCTCAATTAAG 57.981 43.478 0.00 0.00 35.91 1.85
166 167 5.188163 TCTTCCACACGGATACCTCAATTAA 59.812 40.000 0.00 0.00 42.41 1.40
167 168 4.712829 TCTTCCACACGGATACCTCAATTA 59.287 41.667 0.00 0.00 42.41 1.40
168 169 3.517901 TCTTCCACACGGATACCTCAATT 59.482 43.478 0.00 0.00 42.41 2.32
169 170 3.104512 TCTTCCACACGGATACCTCAAT 58.895 45.455 0.00 0.00 42.41 2.57
170 171 2.496070 CTCTTCCACACGGATACCTCAA 59.504 50.000 0.00 0.00 42.41 3.02
171 172 2.100197 CTCTTCCACACGGATACCTCA 58.900 52.381 0.00 0.00 42.41 3.86
172 173 2.099427 GTCTCTTCCACACGGATACCTC 59.901 54.545 0.00 0.00 42.41 3.85
173 174 2.100989 GTCTCTTCCACACGGATACCT 58.899 52.381 0.00 0.00 42.41 3.08
174 175 2.100989 AGTCTCTTCCACACGGATACC 58.899 52.381 0.00 0.00 42.41 2.73
175 176 5.517322 AATAGTCTCTTCCACACGGATAC 57.483 43.478 0.00 0.00 42.41 2.24
176 177 7.201884 CCTTAAATAGTCTCTTCCACACGGATA 60.202 40.741 0.00 0.00 42.41 2.59
177 178 6.407074 CCTTAAATAGTCTCTTCCACACGGAT 60.407 42.308 0.00 0.00 42.41 4.18
178 179 5.105473 CCTTAAATAGTCTCTTCCACACGGA 60.105 44.000 0.00 0.00 40.60 4.69
179 180 5.109903 CCTTAAATAGTCTCTTCCACACGG 58.890 45.833 0.00 0.00 0.00 4.94
180 181 5.577164 CACCTTAAATAGTCTCTTCCACACG 59.423 44.000 0.00 0.00 0.00 4.49
181 182 6.369065 CACACCTTAAATAGTCTCTTCCACAC 59.631 42.308 0.00 0.00 0.00 3.82
182 183 6.269077 TCACACCTTAAATAGTCTCTTCCACA 59.731 38.462 0.00 0.00 0.00 4.17
183 184 6.590677 GTCACACCTTAAATAGTCTCTTCCAC 59.409 42.308 0.00 0.00 0.00 4.02
184 185 6.295688 GGTCACACCTTAAATAGTCTCTTCCA 60.296 42.308 0.00 0.00 34.73 3.53
185 186 6.107343 GGTCACACCTTAAATAGTCTCTTCC 58.893 44.000 0.00 0.00 34.73 3.46
186 187 5.805994 CGGTCACACCTTAAATAGTCTCTTC 59.194 44.000 0.00 0.00 35.66 2.87
187 188 5.337330 CCGGTCACACCTTAAATAGTCTCTT 60.337 44.000 0.00 0.00 35.66 2.85
188 189 4.159879 CCGGTCACACCTTAAATAGTCTCT 59.840 45.833 0.00 0.00 35.66 3.10
189 190 4.081807 ACCGGTCACACCTTAAATAGTCTC 60.082 45.833 0.00 0.00 35.66 3.36
190 191 3.836562 ACCGGTCACACCTTAAATAGTCT 59.163 43.478 0.00 0.00 35.66 3.24
191 192 4.179298 GACCGGTCACACCTTAAATAGTC 58.821 47.826 29.75 0.00 35.66 2.59
192 193 3.579586 TGACCGGTCACACCTTAAATAGT 59.420 43.478 33.23 0.00 35.66 2.12
193 194 4.196626 TGACCGGTCACACCTTAAATAG 57.803 45.455 33.23 0.00 35.66 1.73
194 195 4.020039 ACATGACCGGTCACACCTTAAATA 60.020 41.667 38.46 12.47 43.11 1.40
195 196 3.244770 ACATGACCGGTCACACCTTAAAT 60.245 43.478 38.46 17.42 43.11 1.40
196 197 2.105134 ACATGACCGGTCACACCTTAAA 59.895 45.455 38.46 13.85 43.11 1.52
197 198 1.695242 ACATGACCGGTCACACCTTAA 59.305 47.619 38.46 14.65 43.11 1.85
198 199 1.001520 CACATGACCGGTCACACCTTA 59.998 52.381 38.46 15.46 43.11 2.69
199 200 0.250295 CACATGACCGGTCACACCTT 60.250 55.000 38.46 20.57 43.11 3.50
200 201 1.371183 CACATGACCGGTCACACCT 59.629 57.895 38.46 20.98 43.11 4.00
201 202 0.949105 GACACATGACCGGTCACACC 60.949 60.000 38.46 21.15 43.11 4.16
202 203 0.949105 GGACACATGACCGGTCACAC 60.949 60.000 38.46 24.58 43.11 3.82
203 204 1.369692 GGACACATGACCGGTCACA 59.630 57.895 38.46 19.41 43.11 3.58
204 205 1.736645 CGGACACATGACCGGTCAC 60.737 63.158 38.46 24.57 46.58 3.67
205 206 2.654289 CGGACACATGACCGGTCA 59.346 61.111 37.79 37.79 46.58 4.02
210 211 2.813908 GTCCGCGGACACATGACC 60.814 66.667 44.88 21.66 44.02 4.02
211 212 3.179265 CGTCCGCGGACACATGAC 61.179 66.667 46.26 26.38 44.77 3.06
228 229 2.097728 CGCTAAAACGCCGGAAGC 59.902 61.111 5.05 2.26 38.52 3.86
229 230 1.963190 GACCGCTAAAACGCCGGAAG 61.963 60.000 5.05 0.00 44.55 3.46
230 231 2.028733 GACCGCTAAAACGCCGGAA 61.029 57.895 5.05 0.00 44.55 4.30
231 232 2.432972 GACCGCTAAAACGCCGGA 60.433 61.111 5.05 0.00 44.55 5.14
232 233 2.736682 CTGACCGCTAAAACGCCGG 61.737 63.158 0.00 0.00 46.97 6.13
233 234 1.082117 ATCTGACCGCTAAAACGCCG 61.082 55.000 0.00 0.00 0.00 6.46
234 235 1.084289 AATCTGACCGCTAAAACGCC 58.916 50.000 0.00 0.00 0.00 5.68
235 236 2.505866 CAAATCTGACCGCTAAAACGC 58.494 47.619 0.00 0.00 0.00 4.84
236 237 2.159627 AGCAAATCTGACCGCTAAAACG 59.840 45.455 0.00 0.00 31.60 3.60
237 238 3.058224 ACAGCAAATCTGACCGCTAAAAC 60.058 43.478 0.00 0.00 45.72 2.43
238 239 3.146066 ACAGCAAATCTGACCGCTAAAA 58.854 40.909 0.00 0.00 45.72 1.52
239 240 2.778299 ACAGCAAATCTGACCGCTAAA 58.222 42.857 0.00 0.00 45.72 1.85
240 241 2.472695 ACAGCAAATCTGACCGCTAA 57.527 45.000 0.00 0.00 45.72 3.09
241 242 2.418197 GGTACAGCAAATCTGACCGCTA 60.418 50.000 0.00 0.00 45.72 4.26
242 243 1.676014 GGTACAGCAAATCTGACCGCT 60.676 52.381 0.00 0.00 45.72 5.52
243 244 0.727398 GGTACAGCAAATCTGACCGC 59.273 55.000 0.00 0.00 45.72 5.68
244 245 1.369625 GGGTACAGCAAATCTGACCG 58.630 55.000 0.00 0.00 45.72 4.79
245 246 1.369625 CGGGTACAGCAAATCTGACC 58.630 55.000 0.00 2.78 45.72 4.02
246 247 1.369625 CCGGGTACAGCAAATCTGAC 58.630 55.000 0.00 0.00 45.72 3.51
247 248 0.392461 GCCGGGTACAGCAAATCTGA 60.392 55.000 2.18 0.00 45.72 3.27
249 250 0.392998 CAGCCGGGTACAGCAAATCT 60.393 55.000 5.47 0.00 0.00 2.40
250 251 0.676782 ACAGCCGGGTACAGCAAATC 60.677 55.000 5.47 0.00 0.00 2.17
251 252 0.616371 TACAGCCGGGTACAGCAAAT 59.384 50.000 5.47 0.00 0.00 2.32
252 253 0.036765 CTACAGCCGGGTACAGCAAA 60.037 55.000 5.47 0.00 0.00 3.68
253 254 0.901114 TCTACAGCCGGGTACAGCAA 60.901 55.000 5.47 0.00 0.00 3.91
254 255 0.686441 ATCTACAGCCGGGTACAGCA 60.686 55.000 5.47 0.00 0.00 4.41
255 256 0.249489 CATCTACAGCCGGGTACAGC 60.249 60.000 5.47 0.00 0.00 4.40
256 257 0.249489 GCATCTACAGCCGGGTACAG 60.249 60.000 5.47 6.58 0.00 2.74
257 258 0.686441 AGCATCTACAGCCGGGTACA 60.686 55.000 5.47 0.00 0.00 2.90
258 259 0.032267 GAGCATCTACAGCCGGGTAC 59.968 60.000 5.47 0.00 0.00 3.34
259 260 2.426651 GAGCATCTACAGCCGGGTA 58.573 57.895 5.47 0.00 0.00 3.69
260 261 3.221222 GAGCATCTACAGCCGGGT 58.779 61.111 0.00 0.00 0.00 5.28
292 293 9.677567 CGGAAAGTTCATCTAAAATTTTTCAGA 57.322 29.630 9.06 7.28 0.00 3.27
293 294 8.915654 CCGGAAAGTTCATCTAAAATTTTTCAG 58.084 33.333 9.06 1.46 0.00 3.02
294 295 8.634444 TCCGGAAAGTTCATCTAAAATTTTTCA 58.366 29.630 9.06 0.00 0.00 2.69
295 296 9.129209 CTCCGGAAAGTTCATCTAAAATTTTTC 57.871 33.333 9.06 0.00 0.00 2.29
296 297 8.088365 CCTCCGGAAAGTTCATCTAAAATTTTT 58.912 33.333 9.06 0.00 0.00 1.94
297 298 7.309805 CCCTCCGGAAAGTTCATCTAAAATTTT 60.310 37.037 5.23 8.75 0.00 1.82
298 299 6.152831 CCCTCCGGAAAGTTCATCTAAAATTT 59.847 38.462 5.23 0.00 0.00 1.82
299 300 5.652452 CCCTCCGGAAAGTTCATCTAAAATT 59.348 40.000 5.23 0.00 0.00 1.82
300 301 5.045140 TCCCTCCGGAAAGTTCATCTAAAAT 60.045 40.000 5.23 0.00 34.19 1.82
301 302 4.287585 TCCCTCCGGAAAGTTCATCTAAAA 59.712 41.667 5.23 0.00 34.19 1.52
302 303 3.841845 TCCCTCCGGAAAGTTCATCTAAA 59.158 43.478 5.23 0.00 34.19 1.85
303 304 3.446968 TCCCTCCGGAAAGTTCATCTAA 58.553 45.455 5.23 0.00 34.19 2.10
304 305 3.031736 CTCCCTCCGGAAAGTTCATCTA 58.968 50.000 5.23 0.00 37.86 1.98
305 306 1.834263 CTCCCTCCGGAAAGTTCATCT 59.166 52.381 5.23 0.00 37.86 2.90
306 307 1.555533 ACTCCCTCCGGAAAGTTCATC 59.444 52.381 5.23 0.00 37.86 2.92
307 308 1.657804 ACTCCCTCCGGAAAGTTCAT 58.342 50.000 5.23 0.00 37.86 2.57
308 309 2.314071 TACTCCCTCCGGAAAGTTCA 57.686 50.000 16.39 0.71 37.86 3.18
309 310 2.500504 ACATACTCCCTCCGGAAAGTTC 59.499 50.000 16.39 0.00 37.86 3.01
310 311 2.547990 ACATACTCCCTCCGGAAAGTT 58.452 47.619 16.39 5.20 37.86 2.66
311 312 2.249309 ACATACTCCCTCCGGAAAGT 57.751 50.000 5.23 12.08 37.86 2.66
312 313 2.036089 GCTACATACTCCCTCCGGAAAG 59.964 54.545 5.23 6.10 37.86 2.62
313 314 2.037144 GCTACATACTCCCTCCGGAAA 58.963 52.381 5.23 0.00 37.86 3.13
314 315 1.700955 GCTACATACTCCCTCCGGAA 58.299 55.000 5.23 0.00 37.86 4.30
315 316 0.536687 CGCTACATACTCCCTCCGGA 60.537 60.000 2.93 2.93 36.45 5.14
316 317 0.536687 TCGCTACATACTCCCTCCGG 60.537 60.000 0.00 0.00 0.00 5.14
317 318 1.001597 GTTCGCTACATACTCCCTCCG 60.002 57.143 0.00 0.00 0.00 4.63
318 319 1.001597 CGTTCGCTACATACTCCCTCC 60.002 57.143 0.00 0.00 0.00 4.30
319 320 1.945394 TCGTTCGCTACATACTCCCTC 59.055 52.381 0.00 0.00 0.00 4.30
320 321 2.048444 TCGTTCGCTACATACTCCCT 57.952 50.000 0.00 0.00 0.00 4.20
321 322 2.857592 TTCGTTCGCTACATACTCCC 57.142 50.000 0.00 0.00 0.00 4.30
322 323 2.971915 CGATTCGTTCGCTACATACTCC 59.028 50.000 0.00 0.00 41.69 3.85
334 335 3.471495 AATTGGCAAGACGATTCGTTC 57.529 42.857 13.72 6.83 41.37 3.95
335 336 4.454504 AGTTAATTGGCAAGACGATTCGTT 59.545 37.500 13.72 0.80 41.37 3.85
336 337 4.000988 AGTTAATTGGCAAGACGATTCGT 58.999 39.130 12.25 12.25 45.10 3.85
337 338 4.494199 GGAGTTAATTGGCAAGACGATTCG 60.494 45.833 5.96 4.14 0.00 3.34
338 339 4.201920 GGGAGTTAATTGGCAAGACGATTC 60.202 45.833 5.96 0.00 0.00 2.52
339 340 3.694566 GGGAGTTAATTGGCAAGACGATT 59.305 43.478 5.96 0.00 0.00 3.34
340 341 3.054361 AGGGAGTTAATTGGCAAGACGAT 60.054 43.478 5.96 0.00 0.00 3.73
341 342 2.304761 AGGGAGTTAATTGGCAAGACGA 59.695 45.455 5.96 0.00 0.00 4.20
342 343 2.678336 GAGGGAGTTAATTGGCAAGACG 59.322 50.000 5.96 0.00 0.00 4.18
343 344 3.017442 GGAGGGAGTTAATTGGCAAGAC 58.983 50.000 5.96 4.63 0.00 3.01
344 345 2.025321 GGGAGGGAGTTAATTGGCAAGA 60.025 50.000 5.96 0.00 0.00 3.02
345 346 2.379005 GGGAGGGAGTTAATTGGCAAG 58.621 52.381 5.96 0.00 0.00 4.01
346 347 1.340600 CGGGAGGGAGTTAATTGGCAA 60.341 52.381 0.68 0.68 0.00 4.52
347 348 0.254747 CGGGAGGGAGTTAATTGGCA 59.745 55.000 0.00 0.00 0.00 4.92
348 349 0.544697 TCGGGAGGGAGTTAATTGGC 59.455 55.000 0.00 0.00 0.00 4.52
349 350 2.548067 CGATCGGGAGGGAGTTAATTGG 60.548 54.545 7.38 0.00 0.00 3.16
350 351 2.364324 TCGATCGGGAGGGAGTTAATTG 59.636 50.000 16.41 0.00 0.00 2.32
351 352 2.628657 CTCGATCGGGAGGGAGTTAATT 59.371 50.000 10.16 0.00 0.00 1.40
352 353 2.158505 TCTCGATCGGGAGGGAGTTAAT 60.159 50.000 15.15 0.00 34.74 1.40
353 354 1.213678 TCTCGATCGGGAGGGAGTTAA 59.786 52.381 15.15 0.00 34.74 2.01
354 355 0.841961 TCTCGATCGGGAGGGAGTTA 59.158 55.000 15.15 0.00 34.74 2.24
355 356 0.186386 ATCTCGATCGGGAGGGAGTT 59.814 55.000 23.96 1.77 34.74 3.01
356 357 0.538516 CATCTCGATCGGGAGGGAGT 60.539 60.000 23.96 2.60 34.74 3.85
357 358 0.538516 ACATCTCGATCGGGAGGGAG 60.539 60.000 30.74 18.54 34.74 4.30
358 359 0.106167 AACATCTCGATCGGGAGGGA 60.106 55.000 30.74 14.38 34.74 4.20
359 360 0.032678 CAACATCTCGATCGGGAGGG 59.967 60.000 30.74 22.89 34.74 4.30
360 361 1.032794 TCAACATCTCGATCGGGAGG 58.967 55.000 26.79 26.79 34.74 4.30
361 362 2.860735 GTTTCAACATCTCGATCGGGAG 59.139 50.000 23.96 16.81 35.32 4.30
362 363 2.496070 AGTTTCAACATCTCGATCGGGA 59.504 45.455 21.97 21.97 0.00 5.14
363 364 2.893637 AGTTTCAACATCTCGATCGGG 58.106 47.619 16.41 13.07 0.00 5.14
364 365 3.487574 GCTAGTTTCAACATCTCGATCGG 59.512 47.826 16.41 6.26 0.00 4.18
365 366 4.105486 TGCTAGTTTCAACATCTCGATCG 58.895 43.478 9.36 9.36 0.00 3.69
366 367 6.408858 TTTGCTAGTTTCAACATCTCGATC 57.591 37.500 0.00 0.00 0.00 3.69
367 368 5.163814 GCTTTGCTAGTTTCAACATCTCGAT 60.164 40.000 0.00 0.00 0.00 3.59
368 369 4.152402 GCTTTGCTAGTTTCAACATCTCGA 59.848 41.667 0.00 0.00 0.00 4.04
369 370 4.153117 AGCTTTGCTAGTTTCAACATCTCG 59.847 41.667 0.00 0.00 36.99 4.04
370 371 5.619625 AGCTTTGCTAGTTTCAACATCTC 57.380 39.130 0.00 0.00 36.99 2.75
371 372 6.317391 GGATAGCTTTGCTAGTTTCAACATCT 59.683 38.462 0.00 0.00 44.66 2.90
372 373 6.458888 GGGATAGCTTTGCTAGTTTCAACATC 60.459 42.308 0.00 0.00 44.66 3.06
373 374 5.358160 GGGATAGCTTTGCTAGTTTCAACAT 59.642 40.000 0.00 0.00 44.66 2.71
374 375 4.700213 GGGATAGCTTTGCTAGTTTCAACA 59.300 41.667 0.00 0.00 44.66 3.33
375 376 4.201822 CGGGATAGCTTTGCTAGTTTCAAC 60.202 45.833 0.00 0.00 44.66 3.18
376 377 3.938963 CGGGATAGCTTTGCTAGTTTCAA 59.061 43.478 0.00 0.00 44.66 2.69
377 378 3.196901 TCGGGATAGCTTTGCTAGTTTCA 59.803 43.478 0.00 0.00 44.66 2.69
378 379 3.793559 TCGGGATAGCTTTGCTAGTTTC 58.206 45.455 0.00 0.00 44.66 2.78
379 380 3.906720 TCGGGATAGCTTTGCTAGTTT 57.093 42.857 0.00 0.00 44.66 2.66
380 381 3.906720 TTCGGGATAGCTTTGCTAGTT 57.093 42.857 0.00 0.00 44.66 2.24
381 382 3.244249 GGATTCGGGATAGCTTTGCTAGT 60.244 47.826 0.00 0.00 44.66 2.57
382 383 3.330267 GGATTCGGGATAGCTTTGCTAG 58.670 50.000 0.00 0.00 44.66 3.42
383 384 2.038557 GGGATTCGGGATAGCTTTGCTA 59.961 50.000 0.00 1.60 45.55 3.49
384 385 1.202818 GGGATTCGGGATAGCTTTGCT 60.203 52.381 0.00 0.00 43.41 3.91
385 386 1.202818 AGGGATTCGGGATAGCTTTGC 60.203 52.381 0.00 0.00 0.00 3.68
386 387 2.938956 AGGGATTCGGGATAGCTTTG 57.061 50.000 0.00 0.00 0.00 2.77
387 388 3.858135 TCTAGGGATTCGGGATAGCTTT 58.142 45.455 0.00 0.00 0.00 3.51
388 389 3.544698 TCTAGGGATTCGGGATAGCTT 57.455 47.619 0.00 0.00 0.00 3.74
389 390 3.544698 TTCTAGGGATTCGGGATAGCT 57.455 47.619 0.00 0.00 0.00 3.32
390 391 4.618920 TTTTCTAGGGATTCGGGATAGC 57.381 45.455 0.00 0.00 0.00 2.97
429 430 2.507407 TCGGGATAGCTTGCCTTTTT 57.493 45.000 0.00 0.00 32.55 1.94
430 431 2.369394 CTTCGGGATAGCTTGCCTTTT 58.631 47.619 0.00 0.00 32.55 2.27
431 432 1.408822 CCTTCGGGATAGCTTGCCTTT 60.409 52.381 0.00 0.00 37.25 3.11
432 433 0.181350 CCTTCGGGATAGCTTGCCTT 59.819 55.000 0.00 0.00 37.25 4.35
433 434 1.832912 CCTTCGGGATAGCTTGCCT 59.167 57.895 0.00 0.00 37.25 4.75
434 435 1.894282 GCCTTCGGGATAGCTTGCC 60.894 63.158 0.00 0.00 37.25 4.52
435 436 1.153168 TGCCTTCGGGATAGCTTGC 60.153 57.895 0.00 0.00 37.25 4.01
436 437 1.162800 GCTGCCTTCGGGATAGCTTG 61.163 60.000 0.00 0.00 40.94 4.01
437 438 1.147153 GCTGCCTTCGGGATAGCTT 59.853 57.895 0.00 0.00 40.94 3.74
438 439 2.812619 GGCTGCCTTCGGGATAGCT 61.813 63.158 12.43 0.00 42.53 3.32
439 440 2.281139 GGCTGCCTTCGGGATAGC 60.281 66.667 12.43 0.00 42.33 2.97
440 441 1.070445 CTGGCTGCCTTCGGGATAG 59.930 63.158 21.03 1.84 37.25 2.08
441 442 3.106986 GCTGGCTGCCTTCGGGATA 62.107 63.158 21.03 0.00 37.25 2.59
442 443 4.496336 GCTGGCTGCCTTCGGGAT 62.496 66.667 21.03 0.00 37.25 3.85
468 469 4.832608 GATCGGTGGGCACGGTCC 62.833 72.222 0.00 0.00 35.53 4.46
473 474 2.746277 AAAGCGATCGGTGGGCAC 60.746 61.111 22.01 0.00 0.00 5.01
474 475 2.173758 TACAAAGCGATCGGTGGGCA 62.174 55.000 22.01 3.90 0.00 5.36
475 476 0.814010 ATACAAAGCGATCGGTGGGC 60.814 55.000 22.01 0.24 0.00 5.36
476 477 1.217882 GATACAAAGCGATCGGTGGG 58.782 55.000 22.01 17.63 0.00 4.61
477 478 0.852777 CGATACAAAGCGATCGGTGG 59.147 55.000 22.01 17.99 40.96 4.61
478 479 1.517276 GTCGATACAAAGCGATCGGTG 59.483 52.381 22.01 11.85 46.47 4.94
479 480 1.836383 GTCGATACAAAGCGATCGGT 58.164 50.000 15.21 15.21 46.47 4.69
480 481 0.770590 CGTCGATACAAAGCGATCGG 59.229 55.000 18.30 2.04 46.47 4.18
481 482 0.770590 CCGTCGATACAAAGCGATCG 59.229 55.000 11.69 11.69 46.47 3.69
482 483 1.517276 CACCGTCGATACAAAGCGATC 59.483 52.381 0.00 0.00 46.47 3.69
483 484 1.135199 ACACCGTCGATACAAAGCGAT 60.135 47.619 0.00 0.00 46.47 4.58
484 485 0.241749 ACACCGTCGATACAAAGCGA 59.758 50.000 0.00 0.00 42.10 4.93
485 486 1.844357 CTACACCGTCGATACAAAGCG 59.156 52.381 0.00 0.00 35.34 4.68
486 487 1.587034 GCTACACCGTCGATACAAAGC 59.413 52.381 0.00 0.00 0.00 3.51
487 488 1.844357 CGCTACACCGTCGATACAAAG 59.156 52.381 0.00 0.00 0.00 2.77
488 489 1.898938 CGCTACACCGTCGATACAAA 58.101 50.000 0.00 0.00 0.00 2.83
489 490 0.523968 GCGCTACACCGTCGATACAA 60.524 55.000 0.00 0.00 0.00 2.41
490 491 1.063006 GCGCTACACCGTCGATACA 59.937 57.895 0.00 0.00 0.00 2.29
491 492 1.063006 TGCGCTACACCGTCGATAC 59.937 57.895 9.73 0.00 0.00 2.24
492 493 1.063006 GTGCGCTACACCGTCGATA 59.937 57.895 9.73 0.00 44.02 2.92
493 494 2.202570 GTGCGCTACACCGTCGAT 60.203 61.111 9.73 0.00 44.02 3.59
526 527 0.319405 ATCTCGATCGATGCCATGCA 59.681 50.000 19.78 0.00 44.86 3.96
527 528 0.997932 GATCTCGATCGATGCCATGC 59.002 55.000 19.78 0.67 0.00 4.06
537 538 3.733024 AATACTCTCGCGATCTCGATC 57.267 47.619 10.36 0.00 43.02 3.69
538 539 3.371591 GGTAATACTCTCGCGATCTCGAT 59.628 47.826 10.36 0.00 43.02 3.59
539 540 2.735663 GGTAATACTCTCGCGATCTCGA 59.264 50.000 10.36 7.67 43.02 4.04
540 541 2.479275 TGGTAATACTCTCGCGATCTCG 59.521 50.000 10.36 0.00 43.27 4.04
541 542 3.250280 TGTGGTAATACTCTCGCGATCTC 59.750 47.826 10.36 0.00 0.00 2.75
542 543 3.211865 TGTGGTAATACTCTCGCGATCT 58.788 45.455 10.36 0.00 0.00 2.75
557 558 1.136961 TGAACCCCCTGCATGTGGTA 61.137 55.000 0.00 0.00 0.00 3.25
596 602 6.545567 ACATTATCCCATGCACTTATCATCA 58.454 36.000 0.00 0.00 0.00 3.07
610 616 2.364632 CGTGGCTTGAACATTATCCCA 58.635 47.619 0.00 0.00 0.00 4.37
623 629 4.716003 GCTACTTTCCCGTGGCTT 57.284 55.556 0.00 0.00 38.23 4.35
630 636 2.756829 GCGATTCCTAGCTACTTTCCC 58.243 52.381 0.00 0.00 0.00 3.97
704 712 4.250464 TCTGCATTTACAGTAGGAAACCG 58.750 43.478 0.00 0.00 38.84 4.44
714 726 5.117745 CGATCCGTAGATTCTGCATTTACAG 59.882 44.000 2.63 0.00 34.06 2.74
743 755 1.287425 CCGACTCGCAGTTTATTCCC 58.713 55.000 0.00 0.00 0.00 3.97
781 793 1.937846 CGACGACCGGTTCATAGCG 60.938 63.158 9.42 9.36 44.49 4.26
785 797 2.177531 CGACGACGACCGGTTCAT 59.822 61.111 9.42 0.00 43.93 2.57
974 994 1.136721 CCGTGTCGATCGTGTTTGTTC 60.137 52.381 15.94 0.00 0.00 3.18
1373 1542 2.876550 CGACATGGATGGAGTAGACGTA 59.123 50.000 0.00 0.00 0.00 3.57
1390 1559 5.899120 AGAAGCAGATCTAGTAAACGACA 57.101 39.130 0.00 0.00 0.00 4.35
1405 1574 2.159184 TCAGCCGATCAAGTAGAAGCAG 60.159 50.000 0.00 0.00 0.00 4.24
1406 1575 1.824852 TCAGCCGATCAAGTAGAAGCA 59.175 47.619 0.00 0.00 0.00 3.91
1407 1576 2.468831 CTCAGCCGATCAAGTAGAAGC 58.531 52.381 0.00 0.00 0.00 3.86
1859 2028 4.241555 CGCGGATGGAGAAGGGGG 62.242 72.222 0.00 0.00 0.00 5.40
1958 2127 1.404851 GCAGGCTCTAGAACTGGACAC 60.405 57.143 19.92 5.45 32.98 3.67
2082 2254 9.931210 GTACATGATTTTAGTTTATGTGGCTAC 57.069 33.333 0.00 0.00 34.22 3.58
2336 2517 3.979948 TGCACCTTGTGATTTGTGAATG 58.020 40.909 0.00 0.00 35.23 2.67
2409 2594 3.686128 CAGCTACAGAGTAGTAGTTGCG 58.314 50.000 6.11 0.00 43.18 4.85
2422 2607 2.839486 TCCCTTGAACACAGCTACAG 57.161 50.000 0.00 0.00 0.00 2.74
2436 2745 0.893727 GTGTTTGCCGGACATCCCTT 60.894 55.000 5.05 0.00 0.00 3.95
2574 3066 3.956848 GGAAAAATCAGAGATGGAAGGGG 59.043 47.826 0.00 0.00 0.00 4.79
2575 3067 3.956848 GGGAAAAATCAGAGATGGAAGGG 59.043 47.826 0.00 0.00 0.00 3.95
2607 3100 3.020984 AGATGTGTTTGGGTTTGAACGT 58.979 40.909 0.00 0.00 0.00 3.99
2669 3162 9.925268 TTCTTAAAAAGAAGTCAACACGTATTC 57.075 29.630 0.00 0.00 42.31 1.75
2804 3298 2.627699 CTCCATCCTTCTGTCTCTAGGC 59.372 54.545 0.00 0.00 0.00 3.93
2862 3356 3.053842 ACATTGAGGCTGATTGGAGATGT 60.054 43.478 0.00 0.00 0.00 3.06
2932 3426 6.126940 ACCATATCATCCGATAGAATTGGGAG 60.127 42.308 0.00 0.00 37.53 4.30
2940 3434 5.337571 GCTCCAAACCATATCATCCGATAGA 60.338 44.000 0.00 0.00 37.53 1.98
2942 3436 4.323485 GGCTCCAAACCATATCATCCGATA 60.323 45.833 0.00 0.00 38.48 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.