>input_sequence_64112
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-----------------------------------------------------------ATGGGTTCCGTCTCCTACGTC
CTGGCGGCGGCCGTCCTGGCGGCGCTGGTCTCCGGCGGCGCGTGCATCCCGAGGGTACCGCCGGGCCCCAACATCACCAC
CAACTACAACAACCAGTGGCTCTCCGCCAAGGCCACCTGGTACGGCAAGCCCACCGGCTCCGGCCCCAAAGACAACGGTA
CG---TAATATCCATG----------------------------------------------------------------
--------------------------------------------------------------------CATTCCGTTTTC
CTGGATCGCAAT-------CTTGCACGGGGCC-GTGCTTACGTCTAGGT------GCATGCAGGCGGCGCGTGCGGGATC
AAGGACGTGAACCTGGCTCCCTACAACGGCATGATCGCCTGCGGCAACGTCCCCATCTTCAAGGACGGCAAGGGATGCGG
CTCCTGCTACGAGGTACGTACTACGTCTACTCCATCCATGTCGTTTACTAGATCTGCTTCTACTTGATCGGCTGAGCGAA
CGCAAACGTACGTACGTGGATCGGTCGCAGATCAAGTGCCAGAAGCCTTCGCCGTGCTCCGACAAGCCCATCACCATCTT
CATCACCGACAAGAACTACGAGCCCATCGCGCCGTACCACATCGACCTCTCCGGCAAGGCCTTCGGCGCCATGGCCCCGC
CCGGGAAGGAGCAGACGCTCCGGTCCTTCGGGGAGCTGGAGCTGCAGTTCAGGAGGGTGCGCTGCAAGTACGCGCCCGGC
ACCAAGATCACCTTCCACGTCGAGAAGGGCTCCAACCCCAACTACCTGGCCGTGCTCGTCAAGTTCGTCTCCGACGACGG
CGACGTCGTGCAGATGGACATCCAGGAGAGCAAGTCGCCCGCGTGGATACCGCTGACCTTGTCGTGGGGCGCCATCTGGA
GGTGGGACGGCGCCAAGCCGCTCAAGGCCCCCTTCTCCATCCGCGTCACCAGCGAGTCCGGCAAGAAGCTCATCGCCAAG
GACGTCATCCCCGCCAACTGGAAGGCCGACACCGTCTACCCGTCAAGTGTCCAGTTCTAG--------------------
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>chr1D_1_TraesCS1D01G211500
AGTCCCGTGAGCCGGTGCGTGTCCCATGTCCTACTCTATCTCGCTGGCGACCGGAGCAACACTTCGAGGGGTGCAGCCGG
CCATCGGTCATGGACACGGTGGAGCCGGTCGAGCTCCCCTTAAATTAGGTCTCACGTTACATGTAATAGTATGGATTTGA
GCTTTCTTAATTGAGGTATCCGTGTGGAAGAGACTATTTAAGGTGTGACCGGTCATGTGTCCGCGGACGCTTCCGGCGTT
TTAGCGGTCAGATTTGCTGTACCCGGCTGTAGATGCTCTAATATAATGAAAATCTGAAAAATTTTAGATGAACTTTCCGG
AGGGAGTATGTAGCGAACGAATCGTCTTGCCAATTAACTCCCTCCCGATCGAGATGTTGAAACTAGCAAAGCTATCCCGA
ATCCCTAGAAAAAAGCAAGACCCTAAAAAAAAAAGGCAAGCTATCCCGAAGGCAGCCAGCCCCCGGCTGGACCGTGCCCA
CCGATCGCTTTGTATCGACGGTGTAGCGCACGCGCACGCGCACGCATGCATGGCATCGATCGAGATCGCGAGAGTATTAC
CACATGCAG-----GGGGTTCACTGACACGTTGTTGCACGTTGATGATAAGTGCATGGGATAATGTTCAAGCCACGGGAA
AG--TAGCTAGGAATCGCGTAAATCCATCCATCCTGGCGTGCATTACCGCGACACAATATTTACTACGAGTCGG----TT
TCCTACTGTAAATGCAGAATCTACGGATCGAGAAGGGAATAAACTGCGAGTCGGTTTCCTTAGCTAGCTACTCGCTATGA
ACCGGTCGTCGTCGTCGCGCGCGCATGCGCAGCACCAACGCATGACCAAACTGCCGCTCCGCCGATCCCGTCGCCGCTCC
GCCGC----CGCGCGCGCGCGCTGACGCAGCCGCTGATCCATCCGTTTCGCCTACAAATACCGCCCGCCGCCGCACGGCC
CTTCACCACCTACTGA----CACTCACAAGTCAGAACAAACACGATCGACACGGTCGATATGGGTTCCGTCTCCTACGTC
CTGGCGGCGGCCGTCCTGGCGGCGCTGGTCTCCGGCGGCGCGTGCATCCCGAGGGTACCGCCGGGCCCCAACATCACCAC
CAACTACAACAACCAGTGGCTCTCCGCCAAGGCCACCTGGTACGGCAAGCCCACCGGCTCCGGCCCCAAAGACAACGGTA
CG---TAATATCCATG----------------------------------------------------------------
--------------------------------------------------------------------CATTCCGTTTTC
CTGGATCGCAAT-------CTTGCACGGGGCC-GTGCTTACGTCTAGGT------GCATGCAGGCGGCGCGTGCGGGATC
AAGGACGTGAACCTGGCTCCCTACAACGGCATGATCGCCTGCGGCAACGTCCCCATCTTCAAGGACGGCAAGGGATGCGG
CTCCTGCTACGAGGTACGTACTACGTCTACTCCATCCATGTCGTTTACTAGATCTGCTTCTACTTGATCGGCTGAGCGAA
CGCAAACGTACGTACGTGGATCGGTCGCAGATCAAGTGCCAGAAGCCTTCGCCGTGCTCCGACAAGCCCATCACCATCTT
CATCACCGACAAGAACTACGAGCCCATCGCGCCGTACCACATCGACCTCTCCGGCAAGGCCTTCGGCGCCATGGCCCCGC
CCGGGAAGGAGCAGACGCTCCGGTCCTTCGGGGAGCTGGAGCTGCAGTTCAGGAGGGTGCGCTGCAAGTACGCGCCCGGC
ACCAAGATCACCTTCCACGTCGAGAAGGGCTCCAACCCCAACTACCTGGCCGTGCTCGTCAAGTTCGTCTCCGACGACGG
CGACGTCGTGCAGATGGACATCCAGGAGAGCAAGTCGCCCGCGTGGATACCGCTGACCTTGTCGTGGGGCGCCATCTGGA
GGTGGGACGGCGCCAAGCCGCTCAAGGCCCCCTTCTCCATCCGCGTCACCAGCGAGTCCGGCAAGAAGCTCATCGCCAAG
GACGTCATCCCCGCCAACTGGAAGGCCGACACCGTCTACCCGTCAAGTGTCCAGTTCTAGAGCCT--GCAACTCAATGCC
TCAGATCCATTTAGCCCAGTTCCAATCCTCTTTTGTTTAGGCTTTCTTTTT-GGCTATTGCATTTACTAGCCACATAGCC
TCAGTTTTTTTTAGTAGCCACATAAACTAAAATCATGTACGTAGATTCATGTGCACGGCGTGCTTTTATCTTGTTTAGGA
TTCTAGTTTTGTACTCCATAGGATCCTACGATTATATTTGTTCTAATTTAGTTGAGTTTGATCCATTTCTTATCACCAGT
CGTGATCTGCTGACGGTCA--TTGCCATTTCATTTTTT-CCTCCGTCTTACGACATA------GAAGTATGGAACAATGG
CCGCACCTGATTCTAAATTGAGCTACACCCCTACCTCATTCACAAATCACAAGGTGCAACTAG----GTTATGTTTAGGG
TTGAACGACTAGCATCGACCAAAGCTTTGAAGCCGCAACTACTACTCTGTA-----------------------------
--------------------------------------------------------------------------------
---------------GCTGTGTTCAAGGGATGTCCGGCAAACACTAACCTTCTCATAT----TATATATTTAAAA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AAAGAC
GTAAGGTTTTATATTTCGCCCATCAGCGTTTCGCTCACTATATATCATCGTCC--------------------TCTCCTC
TTCCCCCTCTTTGTTTTGCTTTTTTCC-CCTTCCATCTCTGATTTTTCCCACTAGTTTTACGTTCAAACCCAAACACATC
TTATTGGTTTACCAAATGAAATCGTGTCTTATTTAGCAAGTGAATACGTGTTGACTTCTTTTTAAGAAAGTGTTGATTCA
ATTGCCAGCTAAAGTATATTT-TTGGTATGTAATCATGATGATTGTGTATAAAATACATACGGGCAATTATCTATAGAAG
TATAGCGTTGTAGACAAGCCTAGAGACAGAAGGATGGAGATTGCTCTTCTTGACCAAGAACTTCCTATCACTTGAACATC
TCCAATCAGCCTCAATGTTACCAAACTATTTGCATGCTCTTTCTTTCCTACTAGTACTACTATATCTCCCAATTCTATCG
GATGATATGGTTTGGAGCCTATGTA
>chr1A_544
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---------------------------------------------------------------GATCGCGAGAGTAT-AC
CACATGCAGATGCAGGGGTTCACTGACACGTTGTTGCACGTCGATGATAAGTGCAGGGGATAATGTTCCAGCCACAGGAA
AGTATAGCTAGGAATCGCGTAAATCCATCCATCCTGGCGTGCGTTACCGCGGCACAATATTTACTGCGAGTAGG----TT
TCCTAATGTAAATGCAGAATCTACAGATCGAGAACGGAATAAACTGCGAGTCGGTTTCCT-----AGCTA---GCTGTGA
ACTGGTCGTCGTCG-CGCGCGCGCATGCGCAGCACCAACGCATGACCAAACCGCCGCTCCGCCGATCGCGTCGCCGCCCC
GCCGCCCCGCGCGCGCGCGCGCTGACGCAGCCGCTGATCCATCCGTCTCGCCTACAAATACCGCCCGCCGCCGCACGGCC
CTTCACCACCTACTGACACTCACACGCAACAACACACGAGTCCATCGA------TCGATATGGGTTCCGTCTCCTACGTC
CTGGCGGCGGCCGTCCTGGCGGCGCTGGTCTCCGGCGGCGCGTGCATCCCCAGCGTGCCGCCGGGCCCCAACATCACCAC
CAACTACAACAACCAGTGGCTCCCCGCCAAGGCCACCTGGTACGGCAAGCCCACCGGCTCCGGCCCCAAAGACAACGGTA
CGACGTAATATCCATG----------------------------------------------------------------
--------------------------------------------------------------------CATTCCGTTTTC
TTGGATCGCGAT-------CTTGCACGGAGCCAGTGCTTACGTCTAGGT------GCATGCAGGCGGCGCGTGCGGGATC
AAGGACGTGAACCTGGCCCCCTACAACGGCATGATCGCCTGCGGCAACGTCCCCATCTTCAAGGACGGCAAGGGATGCGG
CTCCTGCTACGAGGTACGCACCACGTCTACTCCATCCACGTCGTTTACTAGAT---CTTCTACTTGATCGGCTGAGCGAC
CGCCAAAGTACGTGCGTGGATGGGTCGCAGATCAAGTGCCAGAAGCCGTCGCCGTGCTCCGACAAGCCCGTCACCATCTT
CATCACCGACAAGAACTACGAGCCCATCGCGCCGTACCACATCGACCTCTCCGGCAAGGCCTTCGGCGCCATGGCCCCGC
CCGGGAAGGAGCAGACGCTCCGCTCCTTCGGGGAGCTGGAGCTGCAGTTCAGGAGGGTGCGCTGCAAGTACGCGCCCGGC
ACCAAGATCACCTTCCACGTCGAGAAGGGCTCCAACCCCAACTACCTGGCCGTGCTCGTCAAGTTCGTCTCCGACGACGG
CGACGTCGTGCAGATGGACATCCAGCAGAGCAAGTCGCCCGCGTGGATTCCGCTGACCTTGTCGTGGGGCGCCATCTGGA
GGTGGGACGGCGCCACGCCGCTCAAGGGCCCCTTCTCCATCCGCGTCACCAGCGAGTCCGGCAAGAAGCTCATCGCCAAG
GACGTCATCCCCGCCAACTGGAAGGCCGACACCGTCTACCCGTCAAATATCCAGTTCTAGAGCCTCTGCGACTCAATGCC
TCAGATCCATTTAGCACAGTTCGAATC--CTTTTGTTTAGGCTTTCTTTTTTGGCTATTTCATTTACTATA---------
--------------TAGCCACATAAACTAAAATCATGTACGTAGATTCATGTGCACGCCGTGCTTTTATCTTGTTTAGGA
TTCTAGTTTTGTACTCCATAGGATCCTACGATTATATTTGTTCTAATTTAGTGGAGTTTGATCCATTTCTTACCACCAGT
TGTGATCTGCTGACGGTCATGTTGCCATTTCATTATTT-TCTCTCTCTTACGACATACTCCTAGAAGTATGGAACAATGG
CCGCACCTGATTCTAACTTGAGCCATACCCCTACCTGATTCACAAATCACAAGGTGCAACTAGCTAGGTTATGTTTAGGG
TTGAACGACTAGCATCGACCAAAGCTTTGAAGCGGCAACTACTACTTTGTA-----------------------------
--------------------------------------------------------------------------------
---------------GCT---------GGATGTCCGGCAAACACTAACCTTCTCTGTTTATGTACATATTTAAAACAGTT
TTGCTAAAGCACATCTAGATGTGTCATAAGTATTACACATCTAAGTCCTATGTCATTGATCTTACGTCGAGATTCGTGTG
GATATTTCTTTTTTTTTTCTTTTCTCTTTATGCTTGATTCACTCACTTAGATGTGCAATAACTAGAGCACATCTAAAGAC
GTAAGGTTTCATATTTCGCCCATCAGCGTTTCGCTCAC----TATCATCGTCCAAGCCCACT------------------
-----------------------------------------AGTTTTTCCACTAGTTTT-CGTTCAAACCCAAACACATC
TTATTGGTTTACCAAATGAAGTCGTGTCTTATTTAGCAAGTCAATAAGCATCGACTTCTTTTTAAGAAAGTGTTGATTCA
ATTGCCAGCTAAAGTATATTTTTTGGTATGTAATCATGATGAGTGTGCACAAAATACATACGGACAATTATCTATAGAAG
TATAGCATTGTAGACAATCCTAGAGACAGAAGGATGGAGATTGCTCTTCTTGACCAAGAACTTCCTATCACTTGAGCATC
TCCAATCAGCCTCGTTGTTACCAAACTATTTGCATGCTCTTTCTTTCCTACTAGTACTACTATATATCCCAATCCAATCG
GATGATATGGTTTGGAGCCTATGTA
>chr1B_674
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----------------------------------------GCATTACCGCGACACAACATCTGTTACATCCAAATTGATT
TCCAAATGTAAATGCAGAATCTACGGATCGAGAACGGAATAAACTGCGAGTCGGTTTCCTTAGCTAGCTA---GCTGTGA
ACTGGTCGTCGTCG-CGCGCGCGCATGCGCAGCACCAACGCATGACCAAACCGCCGCTCCGCCGATCGCGTCGCCGCTCC
G-----CCGCGCGCGCGCGCGCTGACGCGGCCGCTGATCCATCCGTTCCGCCTACAAATACCGCCCGCCGCTGCACGGCC
CTTCACCACCTACTGACACTCACTCACAAGTCACAACAAACACGATCGACACGGTCGATATGGGTTCCGTCTCCTACGTC
CTTGCGGCGGCCGTCCTGGCGGCGCTGGTCTCCGGCGGCGCGTGCATCCCCAAGGTGCCGCCGGGCCCCAACATCACCAC
CAACTACAACAACCAGTGGCTCTCAGCCAAGGCCACCTGGTACGGCAGGCCCACCGGCTCCGGCCCCAAAGACAACGGTA
CTCCCTCCGTCCGAAAATACTTGTCATCAAAATGAACAAAAAAGGATGTATCTAGAACTAAAATACATCTAAATACATCC
TGTTTTATTTATTTTGATGACAAGTATTTCCGGACGGAGGGAGTACGTCGTATGATCCATTTGTACTACATTCCATTTTC
TTGGATTGCAATTTGCAATCTTGCTCGGTGGGTATACTTAGGAATAGTTGCGCGCGCATGCAGGCGGCGCGTGCGGGATC
AAGGACGTGAACCTGGCTCCCTACAACGGCATGATCGCCTGCGGCAACGTCCCCATCTTCAAGGACGGCAAGGGATGCGG
CTCCTGCTACGAGGTACGTA------CTACTCCGTCCACGTCGTTC---AGAT---CTTCTATTTGATCGGCTGAGCGAA
CGCAAACGTACTTACGTGGATCGGTCGCAGATCAAGTGCCAGAAGCCGCCGCCGTGCTCCGACAAGCCCATCACCATCTT
CATCACCGACAAGAACTACGAGCCCATCGCGCCGTACCACATCGACCTCTCCGGCACGGCCTTCGGCGCCATGGCCACGC
CCGGGAAGGAGCAGACGCTCCGGTCGTTCGGGGAGCTCGAGCTGCAGTTCAGGAGGGTGCGCTGCAAGTACGCTCCCGGC
ACCAAGATCACCTTCCATGTCGAGAAGGGCTCCAACCCCAACTACCTGGCCGTGCTCGTTAAGTTCGTCTCCGACGATGG
CGACGTCGTGCAGATGGACATCCAGGAGAGCAAGTCGCCCGCGTGGATACCGCTGACCTTGTCGTGGGGCGCCATCTGGA
GGTGGGACGGCGCCAAGCCGCTCAAGGGCCCCTTCTCCATCCGCGTCACCAGCGAGTCCGGCAAGAAGCTCATCGCCAAG
GACGTCATCCCCGCCAACTGGAAGGCCGACACCGTCTACACGTCAAATGTCCAGTTCTAGAGCCT--GCAACTCAATGCC
TCAGATCCATTTAGCCCAGTTCCAATCCTCTTTTGTTTAGGCTTTCTTTTT-GGCTATTGCATTTACTAGCCACATAGCC
TCAGTTTTTTTTACTAGCCACATAAACTAAAATCATGTA----GATTCATGTGCACGGCGTGCTTTTATCTTGTTTAGGA
TTCTAGTTTTGTACTCCATAGGATCCTACGATTATATTTGTTCTTATTTAGTTGAGTTTGATCCATTTCTTACCACCAGT
CGTGATCTGCTGACGGTCA--TTGCCATTTCATTTTTTTTCTCTCTCTTACGACATA------GAAGTATGGAACAATGG
CCGCACCTGATTCTAAATTGAGCTGCACCCCTACCTGATTCACAAATCACAAGGTGCAACTAG----GTTATGTTTAGGG
TTGAACGACTAGCATCGACCAAAGCTTTGAAGCTGCAACTACTACTTTGTACTCTCTCGGTTCCGAATTACTTGTCTTAG
ATTTATCTAGATACGGATGTATCTAGCACTAAAATGAGTCTAGATACATCTGTATGTAGACAAATCCAAGACAAGTAATT
CGGAACGAGGGAGTAGCTGTGTTCGAGGGATGTCCGGCAAACACTAGACTTCTCTATTTATATATATA-TTTAAA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AAAGAC
GTAAGGTTATATAAGTATATC---------TCGTTCACTATATATCATCGTCCAAGCCCCACTACTTACGTCCTCTCCTC
TTCCCCCTCTCTGTTTTCCTTTTTTTTTCCTTCCATCTCTGATTTTTCCCACTAGTTTT-CGTTCAAACCCAAACACATC
TTATTGGTTTACCAAATGAAATCGTGTATTATTTAGCAAGTCAATAAGCATTGACTTCTTTTTACGAAAGTGTT--TTCA
ATTGCCAGCTAAAGTATATTTTTTGGTATGTAATCATGATGATTGTGTATAAAATACATACGGGCAATTATCTATAGAAG
TATATCGTTGGAGACAATCCTAGAGACAAAAGGATGGAGATTGCTCTTCTTGACCAAGAACTTCCTATCACTTGAGGATA
TCCAATCAGCCTCGATGTTACCAAACTATTTGCATGCTCTTTCTTTCCTACTAGTACTACTATA----------------
-------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S--
-----------------------------------------S-------------S------------S------S----
-----------------------------------------------------------------------S--------
-----S----------------------------S-----------------------------------SSS---S---
--S-----------S------------------------------------S---------------S------------
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---------------------------------S----------------------------------------------
--------------------------------------------------S-----S-----------------------
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S---------------------------S---------------------------------------------------
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---------------------S----------------S--------------SSS------------------------
-----------------------------------------------S--------------------------------
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---------------------------S----------------------------------------------------
----------------------------------------------S---------------------------------
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-------------S------------------------------------------------------------------
------------------------------------------------------------------------S-------
---------------------------------------S---SS-----------------------------------
------------------------------------S-------------------------------------------
---------------------------------S------------S---------------------------------
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------------------------S-----------------------------SSS-----------------------
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----------S------S-------SS--------------------------------S--------------------
-----------------------------------------S----S-SS------------------------------
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-----------------S---------------------------------------------------------S----
-------------S---------------------------------------------------S-------S-S----
-------------------------
>forward_278
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------------------GTACCCGGCTGTAGATGCTC------------------------------------------
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>reverse_2127
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----------------------------------------------GTGTCCAGTTCTAGAGCCTGC-------------
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>forward_379
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---------------------------------------CCCTCCCGATCGAGATGTTG---------------------
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>reverse_2517
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------------------------------------CATTCACAAATCACAAGGTGCA----------------------
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