Multiple sequence alignment - TraesCS1D01G207000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G207000 chr1D 100.000 3315 0 0 1 3315 293457672 293460986 0.000000e+00 6122.0
1 TraesCS1D01G207000 chr1D 85.588 1360 115 46 973 2269 293523911 293525252 0.000000e+00 1351.0
2 TraesCS1D01G207000 chr1D 76.230 122 26 3 2988 3108 468981954 468981835 9.930000e-06 62.1
3 TraesCS1D01G207000 chr1A 88.203 2365 207 43 851 3182 365492024 365494349 0.000000e+00 2756.0
4 TraesCS1D01G207000 chr1A 88.256 843 81 13 1442 2269 365507862 365508701 0.000000e+00 992.0
5 TraesCS1D01G207000 chr1A 91.944 360 20 5 309 667 365491491 365491842 2.300000e-136 496.0
6 TraesCS1D01G207000 chr1A 84.894 470 40 17 955 1402 365507335 365507795 2.350000e-121 446.0
7 TraesCS1D01G207000 chr1A 96.045 177 3 1 691 867 365491835 365492007 5.410000e-73 285.0
8 TraesCS1D01G207000 chr1A 96.000 100 4 0 241 340 365491389 365491488 2.650000e-36 163.0
9 TraesCS1D01G207000 chr1A 75.510 147 30 6 2987 3131 561944518 561944376 2.130000e-07 67.6
10 TraesCS1D01G207000 chr1B 91.191 1033 64 12 688 1711 394507533 394508547 0.000000e+00 1378.0
11 TraesCS1D01G207000 chr1B 85.131 1372 126 45 954 2269 394637483 394638832 0.000000e+00 1332.0
12 TraesCS1D01G207000 chr1B 90.215 511 43 6 1762 2269 394508570 394509076 0.000000e+00 660.0
13 TraesCS1D01G207000 chr1B 95.954 346 11 2 239 583 394506879 394507222 2.890000e-155 558.0
14 TraesCS1D01G207000 chr5D 82.479 468 73 6 1804 2265 472803478 472803942 5.150000e-108 401.0
15 TraesCS1D01G207000 chr5D 79.388 621 72 33 838 1409 472802490 472803103 1.440000e-103 387.0
16 TraesCS1D01G207000 chr5D 80.571 175 33 1 1 175 79136470 79136297 2.070000e-27 134.0
17 TraesCS1D01G207000 chr5B 83.505 388 58 3 1883 2265 580174877 580175263 1.130000e-94 357.0
18 TraesCS1D01G207000 chr5B 88.561 271 30 1 1132 1402 580165074 580165343 8.870000e-86 327.0
19 TraesCS1D01G207000 chr5B 79.661 177 31 5 1 175 88735195 88735022 4.490000e-24 122.0
20 TraesCS1D01G207000 chr7A 81.364 220 33 6 2 219 27803013 27803226 4.400000e-39 172.0
21 TraesCS1D01G207000 chr7A 86.897 145 15 4 1250 1392 722767986 722768128 3.420000e-35 159.0
22 TraesCS1D01G207000 chr7A 80.928 194 35 2 27 219 736611020 736611212 5.730000e-33 152.0
23 TraesCS1D01G207000 chr3B 84.337 166 25 1 1 165 43418926 43418761 9.520000e-36 161.0
24 TraesCS1D01G207000 chr3B 88.235 68 6 2 2634 2700 107957412 107957478 2.740000e-11 80.5
25 TraesCS1D01G207000 chr2A 75.758 330 72 6 1931 2256 761541600 761541275 3.420000e-35 159.0
26 TraesCS1D01G207000 chr2A 82.517 143 25 0 77 219 769521942 769522084 3.470000e-25 126.0
27 TraesCS1D01G207000 chr3D 79.821 223 34 7 1 219 523569022 523568807 5.730000e-33 152.0
28 TraesCS1D01G207000 chr7D 79.372 223 36 6 2 219 631720148 631719931 7.410000e-32 148.0
29 TraesCS1D01G207000 chr7D 73.938 353 74 15 1898 2241 627196506 627196849 3.470000e-25 126.0
30 TraesCS1D01G207000 chr6D 79.091 220 36 8 2 219 86016663 86016874 3.450000e-30 143.0
31 TraesCS1D01G207000 chr6D 86.538 104 8 4 3036 3136 31793505 31793405 3.500000e-20 110.0
32 TraesCS1D01G207000 chr4B 79.474 190 30 8 2674 2857 417224772 417224586 3.470000e-25 126.0
33 TraesCS1D01G207000 chr7B 72.951 366 89 9 1898 2258 727536608 727536248 5.810000e-23 119.0
34 TraesCS1D01G207000 chr6A 85.294 68 10 0 3233 3300 564685067 564685134 1.650000e-08 71.3
35 TraesCS1D01G207000 chr3A 82.500 80 9 5 3226 3302 677842044 677842121 7.680000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G207000 chr1D 293457672 293460986 3314 False 6122.000000 6122 100.000000 1 3315 1 chr1D.!!$F1 3314
1 TraesCS1D01G207000 chr1D 293523911 293525252 1341 False 1351.000000 1351 85.588000 973 2269 1 chr1D.!!$F2 1296
2 TraesCS1D01G207000 chr1A 365491389 365494349 2960 False 925.000000 2756 93.048000 241 3182 4 chr1A.!!$F1 2941
3 TraesCS1D01G207000 chr1A 365507335 365508701 1366 False 719.000000 992 86.575000 955 2269 2 chr1A.!!$F2 1314
4 TraesCS1D01G207000 chr1B 394637483 394638832 1349 False 1332.000000 1332 85.131000 954 2269 1 chr1B.!!$F1 1315
5 TraesCS1D01G207000 chr1B 394506879 394509076 2197 False 865.333333 1378 92.453333 239 2269 3 chr1B.!!$F2 2030
6 TraesCS1D01G207000 chr5D 472802490 472803942 1452 False 394.000000 401 80.933500 838 2265 2 chr5D.!!$F1 1427

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 209 0.106918 ACTGGGAACAAAGGCAACGA 60.107 50.0 0.0 0.0 42.06 3.85 F
1414 1755 0.242825 GTCCGTCCGTCAGTCAATCA 59.757 55.0 0.0 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1424 1765 0.400213 AGCCCCGAAATCAACACTGA 59.600 50.0 0.00 0.0 35.56 3.41 R
2774 3211 0.108992 CACACGTACGCACACCCTAT 60.109 55.0 16.72 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.657075 TTTTTACCGTCAAATCGCTCTC 57.343 40.909 0.00 0.00 0.00 3.20
30 31 3.587797 TTTACCGTCAAATCGCTCTCT 57.412 42.857 0.00 0.00 0.00 3.10
31 32 3.587797 TTACCGTCAAATCGCTCTCTT 57.412 42.857 0.00 0.00 0.00 2.85
32 33 2.457366 ACCGTCAAATCGCTCTCTTT 57.543 45.000 0.00 0.00 0.00 2.52
33 34 2.767505 ACCGTCAAATCGCTCTCTTTT 58.232 42.857 0.00 0.00 0.00 2.27
34 35 3.139077 ACCGTCAAATCGCTCTCTTTTT 58.861 40.909 0.00 0.00 0.00 1.94
35 36 3.186613 ACCGTCAAATCGCTCTCTTTTTC 59.813 43.478 0.00 0.00 0.00 2.29
36 37 3.433615 CCGTCAAATCGCTCTCTTTTTCT 59.566 43.478 0.00 0.00 0.00 2.52
37 38 4.083802 CCGTCAAATCGCTCTCTTTTTCTT 60.084 41.667 0.00 0.00 0.00 2.52
38 39 5.076106 CGTCAAATCGCTCTCTTTTTCTTC 58.924 41.667 0.00 0.00 0.00 2.87
39 40 5.386447 GTCAAATCGCTCTCTTTTTCTTCC 58.614 41.667 0.00 0.00 0.00 3.46
40 41 5.180304 GTCAAATCGCTCTCTTTTTCTTCCT 59.820 40.000 0.00 0.00 0.00 3.36
41 42 5.765182 TCAAATCGCTCTCTTTTTCTTCCTT 59.235 36.000 0.00 0.00 0.00 3.36
42 43 6.263168 TCAAATCGCTCTCTTTTTCTTCCTTT 59.737 34.615 0.00 0.00 0.00 3.11
43 44 7.444183 TCAAATCGCTCTCTTTTTCTTCCTTTA 59.556 33.333 0.00 0.00 0.00 1.85
44 45 7.929941 AATCGCTCTCTTTTTCTTCCTTTAT 57.070 32.000 0.00 0.00 0.00 1.40
45 46 7.929941 ATCGCTCTCTTTTTCTTCCTTTATT 57.070 32.000 0.00 0.00 0.00 1.40
46 47 7.745620 TCGCTCTCTTTTTCTTCCTTTATTT 57.254 32.000 0.00 0.00 0.00 1.40
47 48 7.584987 TCGCTCTCTTTTTCTTCCTTTATTTG 58.415 34.615 0.00 0.00 0.00 2.32
48 49 7.228706 TCGCTCTCTTTTTCTTCCTTTATTTGT 59.771 33.333 0.00 0.00 0.00 2.83
49 50 7.862873 CGCTCTCTTTTTCTTCCTTTATTTGTT 59.137 33.333 0.00 0.00 0.00 2.83
50 51 9.186323 GCTCTCTTTTTCTTCCTTTATTTGTTC 57.814 33.333 0.00 0.00 0.00 3.18
58 59 7.745620 TCTTCCTTTATTTGTTCTCTCAACC 57.254 36.000 0.00 0.00 0.00 3.77
59 60 7.287061 TCTTCCTTTATTTGTTCTCTCAACCA 58.713 34.615 0.00 0.00 0.00 3.67
60 61 7.777910 TCTTCCTTTATTTGTTCTCTCAACCAA 59.222 33.333 0.00 0.00 0.00 3.67
61 62 7.889873 TCCTTTATTTGTTCTCTCAACCAAA 57.110 32.000 0.00 0.00 0.00 3.28
62 63 8.299990 TCCTTTATTTGTTCTCTCAACCAAAA 57.700 30.769 0.00 0.00 0.00 2.44
63 64 8.194769 TCCTTTATTTGTTCTCTCAACCAAAAC 58.805 33.333 0.00 0.00 0.00 2.43
64 65 8.197439 CCTTTATTTGTTCTCTCAACCAAAACT 58.803 33.333 0.00 0.00 0.00 2.66
65 66 8.925161 TTTATTTGTTCTCTCAACCAAAACTG 57.075 30.769 0.00 0.00 0.00 3.16
66 67 5.975693 TTTGTTCTCTCAACCAAAACTGT 57.024 34.783 0.00 0.00 0.00 3.55
67 68 5.975693 TTGTTCTCTCAACCAAAACTGTT 57.024 34.783 0.00 0.00 0.00 3.16
68 69 5.560966 TGTTCTCTCAACCAAAACTGTTC 57.439 39.130 0.00 0.00 0.00 3.18
69 70 4.398044 TGTTCTCTCAACCAAAACTGTTCC 59.602 41.667 0.00 0.00 0.00 3.62
70 71 4.503714 TCTCTCAACCAAAACTGTTCCT 57.496 40.909 0.00 0.00 0.00 3.36
71 72 4.451900 TCTCTCAACCAAAACTGTTCCTC 58.548 43.478 0.00 0.00 0.00 3.71
72 73 3.202906 TCTCAACCAAAACTGTTCCTCG 58.797 45.455 0.00 0.00 0.00 4.63
73 74 2.290641 CTCAACCAAAACTGTTCCTCGG 59.709 50.000 0.00 0.00 0.00 4.63
74 75 2.092861 TCAACCAAAACTGTTCCTCGGA 60.093 45.455 0.00 0.00 0.00 4.55
75 76 2.256117 ACCAAAACTGTTCCTCGGAG 57.744 50.000 0.00 0.00 0.00 4.63
76 77 1.489230 ACCAAAACTGTTCCTCGGAGT 59.511 47.619 4.02 0.00 0.00 3.85
77 78 1.873591 CCAAAACTGTTCCTCGGAGTG 59.126 52.381 4.02 0.00 0.00 3.51
78 79 2.484770 CCAAAACTGTTCCTCGGAGTGA 60.485 50.000 4.02 0.00 0.00 3.41
79 80 3.403038 CAAAACTGTTCCTCGGAGTGAT 58.597 45.455 4.02 0.00 0.00 3.06
80 81 4.562757 CCAAAACTGTTCCTCGGAGTGATA 60.563 45.833 4.02 0.00 0.00 2.15
81 82 3.870633 AACTGTTCCTCGGAGTGATAC 57.129 47.619 4.02 3.97 0.00 2.24
82 83 1.743958 ACTGTTCCTCGGAGTGATACG 59.256 52.381 4.02 0.00 0.00 3.06
83 84 1.743958 CTGTTCCTCGGAGTGATACGT 59.256 52.381 4.02 0.00 0.00 3.57
84 85 1.471287 TGTTCCTCGGAGTGATACGTG 59.529 52.381 0.00 0.00 0.00 4.49
85 86 1.741706 GTTCCTCGGAGTGATACGTGA 59.258 52.381 0.00 0.00 0.00 4.35
86 87 2.118313 TCCTCGGAGTGATACGTGAA 57.882 50.000 0.00 0.00 0.00 3.18
87 88 2.651455 TCCTCGGAGTGATACGTGAAT 58.349 47.619 0.00 0.00 0.00 2.57
88 89 2.357952 TCCTCGGAGTGATACGTGAATG 59.642 50.000 0.00 0.00 0.00 2.67
89 90 2.543861 CCTCGGAGTGATACGTGAATGG 60.544 54.545 0.00 0.00 0.00 3.16
90 91 2.357952 CTCGGAGTGATACGTGAATGGA 59.642 50.000 0.00 0.00 0.00 3.41
91 92 2.956333 TCGGAGTGATACGTGAATGGAT 59.044 45.455 0.00 0.00 0.00 3.41
92 93 4.139038 TCGGAGTGATACGTGAATGGATA 58.861 43.478 0.00 0.00 0.00 2.59
93 94 4.581409 TCGGAGTGATACGTGAATGGATAA 59.419 41.667 0.00 0.00 0.00 1.75
94 95 5.068067 TCGGAGTGATACGTGAATGGATAAA 59.932 40.000 0.00 0.00 0.00 1.40
95 96 5.926542 CGGAGTGATACGTGAATGGATAAAT 59.073 40.000 0.00 0.00 0.00 1.40
96 97 6.423905 CGGAGTGATACGTGAATGGATAAATT 59.576 38.462 0.00 0.00 0.00 1.82
97 98 7.042051 CGGAGTGATACGTGAATGGATAAATTT 60.042 37.037 0.00 0.00 0.00 1.82
98 99 9.268268 GGAGTGATACGTGAATGGATAAATTTA 57.732 33.333 0.00 0.00 0.00 1.40
100 101 9.607988 AGTGATACGTGAATGGATAAATTTACA 57.392 29.630 0.00 0.00 0.00 2.41
103 104 9.659830 GATACGTGAATGGATAAATTTACAACC 57.340 33.333 0.00 5.65 0.00 3.77
104 105 7.455641 ACGTGAATGGATAAATTTACAACCA 57.544 32.000 17.15 17.15 0.00 3.67
105 106 8.062065 ACGTGAATGGATAAATTTACAACCAT 57.938 30.769 19.13 19.13 39.38 3.55
106 107 9.179909 ACGTGAATGGATAAATTTACAACCATA 57.820 29.630 22.35 12.51 37.18 2.74
107 108 9.445786 CGTGAATGGATAAATTTACAACCATAC 57.554 33.333 22.35 18.51 37.18 2.39
158 159 8.641499 TTTAACAAAGAACATTTCCACATCAC 57.359 30.769 0.00 0.00 0.00 3.06
159 160 5.850557 ACAAAGAACATTTCCACATCACA 57.149 34.783 0.00 0.00 0.00 3.58
160 161 6.409524 ACAAAGAACATTTCCACATCACAT 57.590 33.333 0.00 0.00 0.00 3.21
161 162 6.819284 ACAAAGAACATTTCCACATCACATT 58.181 32.000 0.00 0.00 0.00 2.71
162 163 6.925165 ACAAAGAACATTTCCACATCACATTC 59.075 34.615 0.00 0.00 0.00 2.67
163 164 5.300969 AGAACATTTCCACATCACATTCG 57.699 39.130 0.00 0.00 0.00 3.34
164 165 5.003160 AGAACATTTCCACATCACATTCGA 58.997 37.500 0.00 0.00 0.00 3.71
165 166 4.685169 ACATTTCCACATCACATTCGAC 57.315 40.909 0.00 0.00 0.00 4.20
166 167 4.071423 ACATTTCCACATCACATTCGACA 58.929 39.130 0.00 0.00 0.00 4.35
167 168 4.701651 ACATTTCCACATCACATTCGACAT 59.298 37.500 0.00 0.00 0.00 3.06
168 169 4.683501 TTTCCACATCACATTCGACATG 57.316 40.909 0.00 0.00 0.00 3.21
169 170 3.608316 TCCACATCACATTCGACATGA 57.392 42.857 0.00 5.06 0.00 3.07
170 171 3.936564 TCCACATCACATTCGACATGAA 58.063 40.909 0.00 0.00 41.81 2.57
171 172 4.322567 TCCACATCACATTCGACATGAAA 58.677 39.130 0.00 0.00 40.71 2.69
172 173 4.392754 TCCACATCACATTCGACATGAAAG 59.607 41.667 0.00 4.96 40.71 2.62
173 174 4.154737 CCACATCACATTCGACATGAAAGT 59.845 41.667 0.00 5.45 40.71 2.66
174 175 5.335113 CCACATCACATTCGACATGAAAGTT 60.335 40.000 0.00 0.00 40.71 2.66
175 176 6.128309 CCACATCACATTCGACATGAAAGTTA 60.128 38.462 0.00 0.00 40.71 2.24
176 177 7.414429 CCACATCACATTCGACATGAAAGTTAT 60.414 37.037 0.00 0.00 40.71 1.89
177 178 7.964559 CACATCACATTCGACATGAAAGTTATT 59.035 33.333 0.00 0.00 40.71 1.40
178 179 7.964559 ACATCACATTCGACATGAAAGTTATTG 59.035 33.333 0.00 1.88 40.71 1.90
179 180 7.433708 TCACATTCGACATGAAAGTTATTGT 57.566 32.000 0.00 0.00 40.71 2.71
180 181 7.297391 TCACATTCGACATGAAAGTTATTGTG 58.703 34.615 0.00 3.40 40.71 3.33
181 182 6.032775 CACATTCGACATGAAAGTTATTGTGC 59.967 38.462 0.00 0.00 40.71 4.57
182 183 5.681337 TTCGACATGAAAGTTATTGTGCA 57.319 34.783 0.00 0.00 32.37 4.57
183 184 5.878332 TCGACATGAAAGTTATTGTGCAT 57.122 34.783 0.00 0.00 0.00 3.96
184 185 5.630061 TCGACATGAAAGTTATTGTGCATG 58.370 37.500 0.00 0.00 39.09 4.06
185 186 5.411053 TCGACATGAAAGTTATTGTGCATGA 59.589 36.000 0.00 0.00 37.24 3.07
186 187 5.509272 CGACATGAAAGTTATTGTGCATGAC 59.491 40.000 0.00 0.00 37.24 3.06
187 188 5.713025 ACATGAAAGTTATTGTGCATGACC 58.287 37.500 0.00 0.00 37.24 4.02
188 189 4.418013 TGAAAGTTATTGTGCATGACCG 57.582 40.909 0.00 0.00 0.00 4.79
189 190 4.068599 TGAAAGTTATTGTGCATGACCGA 58.931 39.130 0.00 0.00 0.00 4.69
190 191 4.083537 TGAAAGTTATTGTGCATGACCGAC 60.084 41.667 0.00 0.00 0.00 4.79
191 192 3.334583 AGTTATTGTGCATGACCGACT 57.665 42.857 0.00 0.00 0.00 4.18
192 193 3.002791 AGTTATTGTGCATGACCGACTG 58.997 45.455 0.00 0.00 0.00 3.51
193 194 2.022764 TATTGTGCATGACCGACTGG 57.977 50.000 0.00 0.00 42.84 4.00
194 195 0.677731 ATTGTGCATGACCGACTGGG 60.678 55.000 0.00 0.00 40.75 4.45
195 196 1.763546 TTGTGCATGACCGACTGGGA 61.764 55.000 0.00 0.00 40.75 4.37
196 197 1.003839 GTGCATGACCGACTGGGAA 60.004 57.895 0.00 0.00 40.75 3.97
197 198 1.003839 TGCATGACCGACTGGGAAC 60.004 57.895 0.00 0.00 40.75 3.62
198 199 1.003839 GCATGACCGACTGGGAACA 60.004 57.895 0.00 0.00 40.75 3.18
199 200 0.605319 GCATGACCGACTGGGAACAA 60.605 55.000 0.00 0.00 42.06 2.83
200 201 1.890876 CATGACCGACTGGGAACAAA 58.109 50.000 0.00 0.00 42.06 2.83
201 202 1.806542 CATGACCGACTGGGAACAAAG 59.193 52.381 0.00 0.00 42.06 2.77
202 203 0.107831 TGACCGACTGGGAACAAAGG 59.892 55.000 0.00 0.00 42.06 3.11
203 204 1.228154 ACCGACTGGGAACAAAGGC 60.228 57.895 0.00 0.00 42.06 4.35
204 205 1.228124 CCGACTGGGAACAAAGGCA 60.228 57.895 0.00 0.00 42.06 4.75
205 206 0.821711 CCGACTGGGAACAAAGGCAA 60.822 55.000 0.00 0.00 42.06 4.52
206 207 0.310854 CGACTGGGAACAAAGGCAAC 59.689 55.000 0.00 0.00 42.06 4.17
207 208 0.310854 GACTGGGAACAAAGGCAACG 59.689 55.000 0.00 0.00 42.06 4.10
208 209 0.106918 ACTGGGAACAAAGGCAACGA 60.107 50.000 0.00 0.00 42.06 3.85
209 210 1.247567 CTGGGAACAAAGGCAACGAT 58.752 50.000 0.00 0.00 42.06 3.73
210 211 0.958091 TGGGAACAAAGGCAACGATG 59.042 50.000 0.00 0.00 39.15 3.84
211 212 1.243902 GGGAACAAAGGCAACGATGA 58.756 50.000 0.00 0.00 46.39 2.92
212 213 1.068541 GGGAACAAAGGCAACGATGAC 60.069 52.381 0.00 0.00 46.39 3.06
213 214 5.887378 TGGGAACAAAGGCAACGATGACT 62.887 47.826 0.00 0.00 41.37 3.41
219 220 2.386661 AGGCAACGATGACTTACCAG 57.613 50.000 0.00 0.00 44.89 4.00
220 221 1.623811 AGGCAACGATGACTTACCAGT 59.376 47.619 0.00 0.00 44.89 4.00
221 222 2.038557 AGGCAACGATGACTTACCAGTT 59.961 45.455 0.00 0.00 44.89 3.16
222 223 2.159627 GGCAACGATGACTTACCAGTTG 59.840 50.000 0.00 2.21 41.07 3.16
223 224 3.064207 GCAACGATGACTTACCAGTTGA 58.936 45.455 9.87 0.00 40.73 3.18
224 225 3.684788 GCAACGATGACTTACCAGTTGAT 59.315 43.478 9.87 0.00 40.73 2.57
225 226 4.201724 GCAACGATGACTTACCAGTTGATC 60.202 45.833 9.87 0.00 40.73 2.92
226 227 5.171476 CAACGATGACTTACCAGTTGATCT 58.829 41.667 0.00 0.00 40.73 2.75
227 228 5.000012 ACGATGACTTACCAGTTGATCTC 58.000 43.478 0.00 0.00 31.22 2.75
228 229 4.707448 ACGATGACTTACCAGTTGATCTCT 59.293 41.667 0.00 0.00 31.22 3.10
229 230 5.186021 ACGATGACTTACCAGTTGATCTCTT 59.814 40.000 0.00 0.00 31.22 2.85
230 231 5.746245 CGATGACTTACCAGTTGATCTCTTC 59.254 44.000 0.00 0.00 31.22 2.87
231 232 5.407407 TGACTTACCAGTTGATCTCTTCC 57.593 43.478 0.00 0.00 31.22 3.46
232 233 4.223032 TGACTTACCAGTTGATCTCTTCCC 59.777 45.833 0.00 0.00 31.22 3.97
233 234 3.519913 ACTTACCAGTTGATCTCTTCCCC 59.480 47.826 0.00 0.00 0.00 4.81
234 235 2.044793 ACCAGTTGATCTCTTCCCCA 57.955 50.000 0.00 0.00 0.00 4.96
235 236 2.566746 ACCAGTTGATCTCTTCCCCAT 58.433 47.619 0.00 0.00 0.00 4.00
236 237 2.240667 ACCAGTTGATCTCTTCCCCATG 59.759 50.000 0.00 0.00 0.00 3.66
237 238 2.422519 CCAGTTGATCTCTTCCCCATGG 60.423 54.545 4.14 4.14 0.00 3.66
238 239 2.240667 CAGTTGATCTCTTCCCCATGGT 59.759 50.000 11.73 0.00 0.00 3.55
239 240 2.922283 AGTTGATCTCTTCCCCATGGTT 59.078 45.455 11.73 0.00 0.00 3.67
287 288 1.863454 CTGGCAAGCGAGATGTACATC 59.137 52.381 25.47 25.47 38.09 3.06
302 303 6.531948 AGATGTACATCTTTTGCGTCTCTTAC 59.468 38.462 28.95 2.21 45.31 2.34
414 449 5.300286 CAGAACAGGAAATTCCTCTTGTTGT 59.700 40.000 18.81 13.75 45.66 3.32
627 662 4.972591 GCACTGCGCCAAAAGAAT 57.027 50.000 4.18 0.00 32.94 2.40
628 663 3.199764 GCACTGCGCCAAAAGAATT 57.800 47.368 4.18 0.00 32.94 2.17
629 664 1.501169 GCACTGCGCCAAAAGAATTT 58.499 45.000 4.18 0.00 34.91 1.82
632 667 3.121025 GCACTGCGCCAAAAGAATTTAAC 60.121 43.478 4.18 0.00 32.65 2.01
638 673 4.619760 GCGCCAAAAGAATTTAACCAGTAC 59.380 41.667 0.00 0.00 37.28 2.73
639 674 5.564063 GCGCCAAAAGAATTTAACCAGTACT 60.564 40.000 0.00 0.00 37.28 2.73
659 694 7.275779 CAGTACTAGTACAACCACATGATGTTC 59.724 40.741 29.87 2.04 38.48 3.18
660 695 5.488341 ACTAGTACAACCACATGATGTTCC 58.512 41.667 0.00 0.00 0.00 3.62
661 696 3.334691 AGTACAACCACATGATGTTCCG 58.665 45.455 0.00 0.00 0.00 4.30
662 697 0.881118 ACAACCACATGATGTTCCGC 59.119 50.000 0.00 0.00 0.00 5.54
663 698 0.880441 CAACCACATGATGTTCCGCA 59.120 50.000 0.00 0.00 0.00 5.69
664 699 1.135603 CAACCACATGATGTTCCGCAG 60.136 52.381 0.00 0.00 0.00 5.18
665 700 1.308069 ACCACATGATGTTCCGCAGC 61.308 55.000 0.00 0.00 0.00 5.25
666 701 1.430632 CACATGATGTTCCGCAGCC 59.569 57.895 0.00 0.00 31.34 4.85
667 702 1.750399 ACATGATGTTCCGCAGCCC 60.750 57.895 0.00 0.00 31.34 5.19
668 703 2.124151 ATGATGTTCCGCAGCCCC 60.124 61.111 0.00 0.00 31.34 5.80
669 704 3.721370 ATGATGTTCCGCAGCCCCC 62.721 63.158 0.00 0.00 31.34 5.40
737 978 1.202371 CCCAAGAAGTCTGCGCGTATA 60.202 52.381 8.43 0.00 0.00 1.47
738 979 2.545952 CCCAAGAAGTCTGCGCGTATAT 60.546 50.000 8.43 0.00 0.00 0.86
799 1040 7.649973 GTGGAATTCACGTAGAGATATGTAGT 58.350 38.462 7.93 0.00 36.56 2.73
800 1041 8.136165 GTGGAATTCACGTAGAGATATGTAGTT 58.864 37.037 7.93 0.00 36.56 2.24
801 1042 8.135529 TGGAATTCACGTAGAGATATGTAGTTG 58.864 37.037 7.93 0.00 0.00 3.16
876 1151 2.398554 GCCACATGCGTCCATCGTT 61.399 57.895 0.00 0.00 42.13 3.85
899 1174 4.085204 ACCGCGGCCCGTCAAATA 62.085 61.111 28.58 0.00 34.38 1.40
906 1181 1.202651 CGGCCCGTCAAATATTCTCCT 60.203 52.381 0.00 0.00 0.00 3.69
927 1205 2.898343 AAAGACGGGCGCAACGTT 60.898 55.556 26.09 15.24 45.68 3.99
997 1307 4.100084 CTGCACCCCGAGCATGGA 62.100 66.667 0.00 0.00 41.82 3.41
1061 1376 1.002868 GCCTCTTGCAAGCTCTCCA 60.003 57.895 21.99 2.18 40.77 3.86
1064 1379 1.675415 CCTCTTGCAAGCTCTCCACTC 60.675 57.143 21.99 0.00 0.00 3.51
1067 1382 0.322975 TTGCAAGCTCTCCACTCTCC 59.677 55.000 0.00 0.00 0.00 3.71
1090 1413 4.238761 TGAGCTATACATTACACGAGCC 57.761 45.455 0.00 0.00 0.00 4.70
1409 1750 1.133458 GTACGTCCGTCCGTCAGTC 59.867 63.158 0.00 0.00 42.00 3.51
1410 1751 1.301637 TACGTCCGTCCGTCAGTCA 60.302 57.895 0.00 0.00 42.00 3.41
1411 1752 0.884259 TACGTCCGTCCGTCAGTCAA 60.884 55.000 0.00 0.00 42.00 3.18
1412 1753 1.211969 CGTCCGTCCGTCAGTCAAT 59.788 57.895 0.00 0.00 0.00 2.57
1413 1754 0.797249 CGTCCGTCCGTCAGTCAATC 60.797 60.000 0.00 0.00 0.00 2.67
1414 1755 0.242825 GTCCGTCCGTCAGTCAATCA 59.757 55.000 0.00 0.00 0.00 2.57
1415 1756 0.526211 TCCGTCCGTCAGTCAATCAG 59.474 55.000 0.00 0.00 0.00 2.90
1416 1757 0.243907 CCGTCCGTCAGTCAATCAGT 59.756 55.000 0.00 0.00 0.00 3.41
1417 1758 1.618861 CGTCCGTCAGTCAATCAGTC 58.381 55.000 0.00 0.00 0.00 3.51
1418 1759 1.068541 CGTCCGTCAGTCAATCAGTCA 60.069 52.381 0.00 0.00 0.00 3.41
1419 1760 2.600731 GTCCGTCAGTCAATCAGTCAG 58.399 52.381 0.00 0.00 0.00 3.51
1420 1761 2.029828 GTCCGTCAGTCAATCAGTCAGT 60.030 50.000 0.00 0.00 0.00 3.41
1421 1762 2.229062 TCCGTCAGTCAATCAGTCAGTC 59.771 50.000 0.00 0.00 0.00 3.51
1422 1763 2.029918 CCGTCAGTCAATCAGTCAGTCA 60.030 50.000 0.00 0.00 0.00 3.41
1423 1764 3.240884 CGTCAGTCAATCAGTCAGTCAG 58.759 50.000 0.00 0.00 0.00 3.51
1424 1765 3.304996 CGTCAGTCAATCAGTCAGTCAGT 60.305 47.826 0.00 0.00 0.00 3.41
1425 1766 4.233789 GTCAGTCAATCAGTCAGTCAGTC 58.766 47.826 0.00 0.00 0.00 3.51
1426 1767 3.891366 TCAGTCAATCAGTCAGTCAGTCA 59.109 43.478 0.00 0.00 0.00 3.41
1427 1768 4.022503 TCAGTCAATCAGTCAGTCAGTCAG 60.023 45.833 0.00 0.00 0.00 3.51
1428 1769 3.894427 AGTCAATCAGTCAGTCAGTCAGT 59.106 43.478 0.00 0.00 0.00 3.41
1462 1855 2.159517 GCTGCCTTGATTAACCGAAGTG 60.160 50.000 0.00 0.00 0.00 3.16
1615 2008 3.068024 TCAATTGACAGGGTGAGCAAAAC 59.932 43.478 3.38 0.00 0.00 2.43
1631 2028 2.671130 AAACCGCAAATTATGGCCTG 57.329 45.000 3.32 0.00 0.00 4.85
1633 2030 1.067916 CCGCAAATTATGGCCTGCC 59.932 57.895 3.32 0.00 0.00 4.85
1786 2213 7.535139 CCTGATCCAAATAAGCTTTCGTTTTA 58.465 34.615 3.20 0.00 0.00 1.52
1852 2280 3.507233 TGATTGCTTTGCCGAAGAGATTT 59.493 39.130 0.00 0.00 37.57 2.17
1863 2292 4.574013 GCCGAAGAGATTTGTTCTGATGAT 59.426 41.667 0.00 0.00 33.74 2.45
1864 2293 5.755375 GCCGAAGAGATTTGTTCTGATGATA 59.245 40.000 0.00 0.00 33.74 2.15
1881 2317 7.013178 TCTGATGATAAAATAATTCCTTGCGCA 59.987 33.333 5.66 5.66 0.00 6.09
2104 2540 3.467226 CGGGTGCCTGGATACGGT 61.467 66.667 0.00 0.00 43.49 4.83
2273 2709 4.035792 ACTTCGCTAGCTAGACAGTGTATG 59.964 45.833 25.15 6.18 0.00 2.39
2274 2710 2.879026 TCGCTAGCTAGACAGTGTATGG 59.121 50.000 25.15 0.00 0.00 2.74
2279 2715 1.860399 GCTAGACAGTGTATGGACGCG 60.860 57.143 3.53 3.53 41.20 6.01
2287 2723 3.615056 CAGTGTATGGACGCGTTATGAAA 59.385 43.478 15.53 0.00 41.20 2.69
2309 2745 9.109393 TGAAAAAGTGTCTATACTTATGCCATC 57.891 33.333 0.00 0.00 39.86 3.51
2357 2793 9.424319 GTGATCAGTTGATTCGTATGGTAATAT 57.576 33.333 0.00 0.00 34.37 1.28
2371 2807 9.309516 CGTATGGTAATATGACTAAGTTGTTGT 57.690 33.333 0.00 0.00 0.00 3.32
2412 2848 9.491675 TTTGAATAAAATCACATTGCATCAACT 57.508 25.926 0.00 0.00 0.00 3.16
2413 2849 8.468720 TGAATAAAATCACATTGCATCAACTG 57.531 30.769 0.00 0.00 0.00 3.16
2414 2850 7.546316 TGAATAAAATCACATTGCATCAACTGG 59.454 33.333 0.00 0.00 0.00 4.00
2415 2851 4.877378 AAATCACATTGCATCAACTGGT 57.123 36.364 0.00 0.00 0.00 4.00
2428 2864 6.039829 TGCATCAACTGGTTTGTTATGTTGTA 59.960 34.615 0.00 0.00 39.03 2.41
2432 2868 7.798801 TCAACTGGTTTGTTATGTTGTATACG 58.201 34.615 0.00 0.00 39.03 3.06
2439 2875 7.428183 GGTTTGTTATGTTGTATACGCAAGATG 59.572 37.037 0.00 0.00 43.62 2.90
2441 2877 7.835634 TGTTATGTTGTATACGCAAGATGAA 57.164 32.000 0.00 0.00 43.62 2.57
2460 2896 1.861982 AGTATAACAGGCCGACCAGT 58.138 50.000 0.00 0.00 37.25 4.00
2464 2900 2.107041 TAACAGGCCGACCAGTGTGG 62.107 60.000 0.00 0.00 45.02 4.17
2474 2910 3.706055 CCAGTGTGGTAGCTGTGTT 57.294 52.632 0.00 0.00 31.35 3.32
2507 2943 4.564821 GGGGAAAGTGTGATAGCTGTGTTA 60.565 45.833 0.00 0.00 0.00 2.41
2515 2951 3.612860 GTGATAGCTGTGTTACTTGTCCG 59.387 47.826 0.00 0.00 0.00 4.79
2517 2953 2.150397 AGCTGTGTTACTTGTCCGAC 57.850 50.000 0.00 0.00 0.00 4.79
2520 2956 2.828877 CTGTGTTACTTGTCCGACCAA 58.171 47.619 0.00 0.00 0.00 3.67
2521 2957 2.542595 CTGTGTTACTTGTCCGACCAAC 59.457 50.000 0.00 0.00 0.00 3.77
2536 2972 0.250124 CCAACAGTGGCCTTACGTCA 60.250 55.000 3.32 0.00 38.35 4.35
2541 2977 0.606604 AGTGGCCTTACGTCACGAAT 59.393 50.000 2.91 0.00 36.60 3.34
2546 2982 2.284417 GGCCTTACGTCACGAATCAATC 59.716 50.000 2.91 0.00 0.00 2.67
2547 2983 2.284417 GCCTTACGTCACGAATCAATCC 59.716 50.000 2.91 0.00 0.00 3.01
2548 2984 3.517602 CCTTACGTCACGAATCAATCCA 58.482 45.455 2.91 0.00 0.00 3.41
2551 2987 2.279741 ACGTCACGAATCAATCCATGG 58.720 47.619 2.91 4.97 0.00 3.66
2554 2990 3.485711 CGTCACGAATCAATCCATGGTTG 60.486 47.826 12.58 15.04 30.63 3.77
2574 3010 3.636679 TGGATGGTTTGAAGGACACAAA 58.363 40.909 0.00 0.00 35.34 2.83
2579 3015 6.349363 GGATGGTTTGAAGGACACAAAGATAC 60.349 42.308 0.00 0.00 37.80 2.24
2586 3022 6.640518 TGAAGGACACAAAGATACTGGTATC 58.359 40.000 11.52 11.52 41.63 2.24
2587 3023 5.615925 AGGACACAAAGATACTGGTATCC 57.384 43.478 14.77 2.05 42.13 2.59
2607 3043 1.691196 CCAGCTCAACAGGGTTCAAA 58.309 50.000 0.00 0.00 0.00 2.69
2609 3045 2.229784 CCAGCTCAACAGGGTTCAAATC 59.770 50.000 0.00 0.00 0.00 2.17
2610 3046 3.152341 CAGCTCAACAGGGTTCAAATCT 58.848 45.455 0.00 0.00 0.00 2.40
2611 3047 3.571401 CAGCTCAACAGGGTTCAAATCTT 59.429 43.478 0.00 0.00 0.00 2.40
2613 3049 5.006386 AGCTCAACAGGGTTCAAATCTTAG 58.994 41.667 0.00 0.00 0.00 2.18
2625 3061 7.809806 GGGTTCAAATCTTAGACTTGACATTTG 59.190 37.037 5.57 1.26 34.11 2.32
2626 3062 8.567948 GGTTCAAATCTTAGACTTGACATTTGA 58.432 33.333 5.57 3.57 38.08 2.69
2643 3079 6.204359 ACATTTGATGCTCGCATTATTTCTC 58.796 36.000 5.79 0.00 36.70 2.87
2644 3080 5.816449 TTTGATGCTCGCATTATTTCTCA 57.184 34.783 5.79 0.00 36.70 3.27
2656 3092 9.734620 TCGCATTATTTCTCAATTTATTTCAGG 57.265 29.630 0.00 0.00 0.00 3.86
2664 3100 7.519032 TCTCAATTTATTTCAGGTTTTCGGT 57.481 32.000 0.00 0.00 0.00 4.69
2671 3107 4.993029 TTTCAGGTTTTCGGTGATGTTT 57.007 36.364 0.00 0.00 0.00 2.83
2684 3120 2.554032 GTGATGTTTGTTCAGTGGGAGG 59.446 50.000 0.00 0.00 0.00 4.30
2687 3123 1.142870 TGTTTGTTCAGTGGGAGGAGG 59.857 52.381 0.00 0.00 0.00 4.30
2689 3125 2.111999 TTGTTCAGTGGGAGGAGGCG 62.112 60.000 0.00 0.00 0.00 5.52
2701 3137 2.183555 GAGGCGTTCCCGTCGATT 59.816 61.111 0.00 0.00 45.26 3.34
2702 3138 2.125673 AGGCGTTCCCGTCGATTG 60.126 61.111 0.00 0.00 45.26 2.67
2703 3139 3.861263 GGCGTTCCCGTCGATTGC 61.861 66.667 0.00 0.00 36.15 3.56
2704 3140 4.204891 GCGTTCCCGTCGATTGCG 62.205 66.667 0.00 0.00 36.15 4.85
2705 3141 2.505337 CGTTCCCGTCGATTGCGA 60.505 61.111 0.00 0.00 45.71 5.10
2719 3155 2.125673 GCGAGGTGCGTGTGGTAT 60.126 61.111 0.00 0.00 43.41 2.73
2721 3157 1.693083 GCGAGGTGCGTGTGGTATTC 61.693 60.000 0.00 0.00 43.41 1.75
2722 3158 1.410737 CGAGGTGCGTGTGGTATTCG 61.411 60.000 0.00 0.00 34.64 3.34
2736 3173 7.010183 CGTGTGGTATTCGTAAAATCTCAAGAT 59.990 37.037 0.00 0.00 36.07 2.40
2737 3174 8.116753 GTGTGGTATTCGTAAAATCTCAAGATG 58.883 37.037 0.00 0.00 34.49 2.90
2744 3181 7.853377 TCGTAAAATCTCAAGATGCTATACG 57.147 36.000 14.45 14.45 35.79 3.06
2745 3182 7.423199 TCGTAAAATCTCAAGATGCTATACGT 58.577 34.615 17.24 0.00 35.86 3.57
2746 3183 7.378728 TCGTAAAATCTCAAGATGCTATACGTG 59.621 37.037 17.24 0.00 35.86 4.49
2747 3184 6.851222 AAAATCTCAAGATGCTATACGTGG 57.149 37.500 0.00 0.00 34.49 4.94
2759 3196 2.398252 ATACGTGGTCAGTCTCTCGA 57.602 50.000 0.00 0.00 0.00 4.04
2761 3198 1.315690 ACGTGGTCAGTCTCTCGAAA 58.684 50.000 0.00 0.00 0.00 3.46
2763 3200 1.704070 GTGGTCAGTCTCTCGAAAGC 58.296 55.000 0.00 0.00 0.00 3.51
2767 3204 0.169230 TCAGTCTCTCGAAAGCGCTC 59.831 55.000 12.06 0.00 37.46 5.03
2774 3211 0.385751 CTCGAAAGCGCTCATAGGGA 59.614 55.000 12.06 1.71 37.46 4.20
2779 3216 1.270907 AAGCGCTCATAGGGATAGGG 58.729 55.000 12.06 0.00 0.00 3.53
2787 3224 2.158430 TCATAGGGATAGGGTGTGCGTA 60.158 50.000 0.00 0.00 0.00 4.42
2788 3225 1.696063 TAGGGATAGGGTGTGCGTAC 58.304 55.000 0.00 0.00 0.00 3.67
2789 3226 1.066918 GGGATAGGGTGTGCGTACG 59.933 63.158 11.84 11.84 0.00 3.67
2800 3237 2.090041 GTGTGCGTACGTGTGTTCATAG 59.910 50.000 17.90 0.00 0.00 2.23
2803 3240 1.135315 GCGTACGTGTGTTCATAGGGA 60.135 52.381 17.90 0.00 0.00 4.20
2805 3242 3.113322 CGTACGTGTGTTCATAGGGATG 58.887 50.000 7.22 0.00 0.00 3.51
2813 3250 4.142249 TGTGTTCATAGGGATGAGTGTACG 60.142 45.833 0.00 0.00 43.03 3.67
2814 3251 3.181479 TGTTCATAGGGATGAGTGTACGC 60.181 47.826 0.00 0.00 43.03 4.42
2816 3253 2.885266 TCATAGGGATGAGTGTACGCTC 59.115 50.000 26.18 26.18 37.15 5.03
2825 3262 3.002102 TGAGTGTACGCTCGTGTATGTA 58.998 45.455 26.76 8.11 38.28 2.29
2835 3272 3.360765 GCTCGTGTATGTAAGCGATTTCG 60.361 47.826 0.00 0.00 43.27 3.46
2852 3289 8.875803 AGCGATTTCGATTGTACTATGTAAAAA 58.124 29.630 3.77 0.00 43.02 1.94
2873 3310 5.763876 AAAGAAGCAGTACCCTTATGTCT 57.236 39.130 0.00 0.00 0.00 3.41
2874 3311 5.346181 AAGAAGCAGTACCCTTATGTCTC 57.654 43.478 0.00 0.00 0.00 3.36
2900 3337 2.817396 GCAGCCTCGCCTGAAGAC 60.817 66.667 2.39 0.00 34.77 3.01
2909 3346 0.666274 CGCCTGAAGACAGCGTTGTA 60.666 55.000 4.38 0.00 42.25 2.41
2910 3347 0.790814 GCCTGAAGACAGCGTTGTAC 59.209 55.000 4.38 0.92 42.25 2.90
2913 3350 3.676324 GCCTGAAGACAGCGTTGTACTAT 60.676 47.826 4.38 0.00 42.25 2.12
2914 3351 3.859961 CCTGAAGACAGCGTTGTACTATG 59.140 47.826 4.38 0.00 42.25 2.23
2917 3357 4.022676 TGAAGACAGCGTTGTACTATGTCA 60.023 41.667 4.38 3.34 42.11 3.58
2920 3360 3.782046 ACAGCGTTGTACTATGTCATCC 58.218 45.455 1.89 0.00 35.25 3.51
2924 3364 3.308866 GCGTTGTACTATGTCATCCCAAC 59.691 47.826 0.00 0.00 0.00 3.77
2925 3365 4.500127 CGTTGTACTATGTCATCCCAACA 58.500 43.478 13.03 3.37 32.39 3.33
2929 3369 3.650281 ACTATGTCATCCCAACATGCA 57.350 42.857 0.00 0.00 37.86 3.96
2932 3372 0.697658 TGTCATCCCAACATGCAGGA 59.302 50.000 4.84 0.00 0.00 3.86
2936 3376 1.133575 CATCCCAACATGCAGGAGGAT 60.134 52.381 4.84 10.77 33.29 3.24
2938 3378 0.256752 CCCAACATGCAGGAGGATGA 59.743 55.000 4.84 0.00 45.45 2.92
2939 3379 1.133575 CCCAACATGCAGGAGGATGAT 60.134 52.381 4.84 0.00 45.45 2.45
2940 3380 2.228059 CCAACATGCAGGAGGATGATC 58.772 52.381 4.84 0.00 45.45 2.92
2941 3381 2.422377 CCAACATGCAGGAGGATGATCA 60.422 50.000 4.84 0.00 45.45 2.92
3060 3509 9.904647 CAAAAACACTCTCACATAAAACATTTG 57.095 29.630 0.00 0.00 0.00 2.32
3061 3510 9.868277 AAAAACACTCTCACATAAAACATTTGA 57.132 25.926 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.312443 AGAGAGCGATTTGACGGTAAAAA 58.688 39.130 0.00 0.00 43.81 1.94
9 10 3.921677 AGAGAGCGATTTGACGGTAAAA 58.078 40.909 0.00 0.00 43.81 1.52
10 11 3.587797 AGAGAGCGATTTGACGGTAAA 57.412 42.857 0.00 0.00 43.81 2.01
11 12 3.587797 AAGAGAGCGATTTGACGGTAA 57.412 42.857 0.00 0.00 43.81 2.85
12 13 3.587797 AAAGAGAGCGATTTGACGGTA 57.412 42.857 0.00 0.00 43.81 4.02
13 14 2.457366 AAAGAGAGCGATTTGACGGT 57.543 45.000 0.00 0.00 46.35 4.83
14 15 3.433615 AGAAAAAGAGAGCGATTTGACGG 59.566 43.478 0.00 0.00 0.00 4.79
15 16 4.653806 AGAAAAAGAGAGCGATTTGACG 57.346 40.909 0.00 0.00 0.00 4.35
16 17 5.180304 AGGAAGAAAAAGAGAGCGATTTGAC 59.820 40.000 0.00 0.00 0.00 3.18
17 18 5.308825 AGGAAGAAAAAGAGAGCGATTTGA 58.691 37.500 0.00 0.00 0.00 2.69
18 19 5.619625 AGGAAGAAAAAGAGAGCGATTTG 57.380 39.130 0.00 0.00 0.00 2.32
19 20 6.641169 AAAGGAAGAAAAAGAGAGCGATTT 57.359 33.333 0.00 0.00 0.00 2.17
20 21 7.929941 ATAAAGGAAGAAAAAGAGAGCGATT 57.070 32.000 0.00 0.00 0.00 3.34
21 22 7.929941 AATAAAGGAAGAAAAAGAGAGCGAT 57.070 32.000 0.00 0.00 0.00 4.58
22 23 7.228706 ACAAATAAAGGAAGAAAAAGAGAGCGA 59.771 33.333 0.00 0.00 0.00 4.93
23 24 7.363431 ACAAATAAAGGAAGAAAAAGAGAGCG 58.637 34.615 0.00 0.00 0.00 5.03
24 25 9.186323 GAACAAATAAAGGAAGAAAAAGAGAGC 57.814 33.333 0.00 0.00 0.00 4.09
32 33 8.630037 GGTTGAGAGAACAAATAAAGGAAGAAA 58.370 33.333 0.00 0.00 0.00 2.52
33 34 7.777910 TGGTTGAGAGAACAAATAAAGGAAGAA 59.222 33.333 0.00 0.00 0.00 2.52
34 35 7.287061 TGGTTGAGAGAACAAATAAAGGAAGA 58.713 34.615 0.00 0.00 0.00 2.87
35 36 7.510549 TGGTTGAGAGAACAAATAAAGGAAG 57.489 36.000 0.00 0.00 0.00 3.46
36 37 7.889873 TTGGTTGAGAGAACAAATAAAGGAA 57.110 32.000 0.00 0.00 0.00 3.36
37 38 7.889873 TTTGGTTGAGAGAACAAATAAAGGA 57.110 32.000 0.00 0.00 0.00 3.36
38 39 8.197439 AGTTTTGGTTGAGAGAACAAATAAAGG 58.803 33.333 0.00 0.00 33.40 3.11
39 40 9.023967 CAGTTTTGGTTGAGAGAACAAATAAAG 57.976 33.333 0.00 0.00 33.40 1.85
40 41 8.527810 ACAGTTTTGGTTGAGAGAACAAATAAA 58.472 29.630 0.00 0.00 33.40 1.40
41 42 8.062065 ACAGTTTTGGTTGAGAGAACAAATAA 57.938 30.769 0.00 0.00 33.40 1.40
42 43 7.639113 ACAGTTTTGGTTGAGAGAACAAATA 57.361 32.000 0.00 0.00 33.40 1.40
43 44 6.530019 ACAGTTTTGGTTGAGAGAACAAAT 57.470 33.333 0.00 0.00 33.40 2.32
44 45 5.975693 ACAGTTTTGGTTGAGAGAACAAA 57.024 34.783 0.00 0.00 0.00 2.83
45 46 5.105917 GGAACAGTTTTGGTTGAGAGAACAA 60.106 40.000 0.00 0.00 0.00 2.83
46 47 4.398044 GGAACAGTTTTGGTTGAGAGAACA 59.602 41.667 0.00 0.00 0.00 3.18
47 48 4.640647 AGGAACAGTTTTGGTTGAGAGAAC 59.359 41.667 0.00 0.00 0.00 3.01
48 49 4.855340 AGGAACAGTTTTGGTTGAGAGAA 58.145 39.130 0.00 0.00 0.00 2.87
49 50 4.451900 GAGGAACAGTTTTGGTTGAGAGA 58.548 43.478 0.00 0.00 0.00 3.10
50 51 3.248602 CGAGGAACAGTTTTGGTTGAGAG 59.751 47.826 0.00 0.00 0.00 3.20
51 52 3.202906 CGAGGAACAGTTTTGGTTGAGA 58.797 45.455 0.00 0.00 0.00 3.27
52 53 2.290641 CCGAGGAACAGTTTTGGTTGAG 59.709 50.000 0.00 0.00 0.00 3.02
53 54 2.092861 TCCGAGGAACAGTTTTGGTTGA 60.093 45.455 0.00 0.00 0.00 3.18
54 55 2.290641 CTCCGAGGAACAGTTTTGGTTG 59.709 50.000 0.00 0.00 0.00 3.77
55 56 2.092592 ACTCCGAGGAACAGTTTTGGTT 60.093 45.455 0.00 0.00 0.00 3.67
56 57 1.489230 ACTCCGAGGAACAGTTTTGGT 59.511 47.619 0.00 0.00 0.00 3.67
57 58 1.873591 CACTCCGAGGAACAGTTTTGG 59.126 52.381 0.00 0.00 0.00 3.28
58 59 2.833794 TCACTCCGAGGAACAGTTTTG 58.166 47.619 0.00 0.00 0.00 2.44
59 60 3.771577 ATCACTCCGAGGAACAGTTTT 57.228 42.857 0.00 0.00 0.00 2.43
60 61 3.367087 CGTATCACTCCGAGGAACAGTTT 60.367 47.826 0.00 0.00 0.00 2.66
61 62 2.163815 CGTATCACTCCGAGGAACAGTT 59.836 50.000 0.00 0.00 0.00 3.16
62 63 1.743958 CGTATCACTCCGAGGAACAGT 59.256 52.381 0.00 0.00 0.00 3.55
63 64 1.743958 ACGTATCACTCCGAGGAACAG 59.256 52.381 0.00 0.00 0.00 3.16
64 65 1.471287 CACGTATCACTCCGAGGAACA 59.529 52.381 0.00 0.00 0.00 3.18
65 66 1.741706 TCACGTATCACTCCGAGGAAC 59.258 52.381 0.00 0.00 0.00 3.62
66 67 2.118313 TCACGTATCACTCCGAGGAA 57.882 50.000 0.00 0.00 0.00 3.36
67 68 2.118313 TTCACGTATCACTCCGAGGA 57.882 50.000 0.00 0.00 0.00 3.71
68 69 2.543861 CCATTCACGTATCACTCCGAGG 60.544 54.545 0.00 0.00 0.00 4.63
69 70 2.357952 TCCATTCACGTATCACTCCGAG 59.642 50.000 0.00 0.00 0.00 4.63
70 71 2.371306 TCCATTCACGTATCACTCCGA 58.629 47.619 0.00 0.00 0.00 4.55
71 72 2.863401 TCCATTCACGTATCACTCCG 57.137 50.000 0.00 0.00 0.00 4.63
72 73 7.730364 AATTTATCCATTCACGTATCACTCC 57.270 36.000 0.00 0.00 0.00 3.85
74 75 9.607988 TGTAAATTTATCCATTCACGTATCACT 57.392 29.630 0.31 0.00 0.00 3.41
77 78 9.659830 GGTTGTAAATTTATCCATTCACGTATC 57.340 33.333 0.31 0.00 0.00 2.24
78 79 9.179909 TGGTTGTAAATTTATCCATTCACGTAT 57.820 29.630 0.31 0.00 0.00 3.06
79 80 8.563123 TGGTTGTAAATTTATCCATTCACGTA 57.437 30.769 0.31 0.00 0.00 3.57
80 81 7.455641 TGGTTGTAAATTTATCCATTCACGT 57.544 32.000 0.31 0.00 0.00 4.49
81 82 9.445786 GTATGGTTGTAAATTTATCCATTCACG 57.554 33.333 24.03 0.00 37.03 4.35
132 133 9.260002 GTGATGTGGAAATGTTCTTTGTTAAAT 57.740 29.630 0.00 0.00 0.00 1.40
133 134 8.253810 TGTGATGTGGAAATGTTCTTTGTTAAA 58.746 29.630 0.00 0.00 0.00 1.52
134 135 7.776107 TGTGATGTGGAAATGTTCTTTGTTAA 58.224 30.769 0.00 0.00 0.00 2.01
135 136 7.340122 TGTGATGTGGAAATGTTCTTTGTTA 57.660 32.000 0.00 0.00 0.00 2.41
136 137 6.219417 TGTGATGTGGAAATGTTCTTTGTT 57.781 33.333 0.00 0.00 0.00 2.83
137 138 5.850557 TGTGATGTGGAAATGTTCTTTGT 57.149 34.783 0.00 0.00 0.00 2.83
138 139 6.088483 CGAATGTGATGTGGAAATGTTCTTTG 59.912 38.462 0.00 0.00 0.00 2.77
139 140 6.016360 TCGAATGTGATGTGGAAATGTTCTTT 60.016 34.615 0.00 0.00 0.00 2.52
140 141 5.473162 TCGAATGTGATGTGGAAATGTTCTT 59.527 36.000 0.00 0.00 0.00 2.52
141 142 5.003160 TCGAATGTGATGTGGAAATGTTCT 58.997 37.500 0.00 0.00 0.00 3.01
142 143 5.088739 GTCGAATGTGATGTGGAAATGTTC 58.911 41.667 0.00 0.00 0.00 3.18
143 144 4.518590 TGTCGAATGTGATGTGGAAATGTT 59.481 37.500 0.00 0.00 0.00 2.71
144 145 4.071423 TGTCGAATGTGATGTGGAAATGT 58.929 39.130 0.00 0.00 0.00 2.71
145 146 4.683501 TGTCGAATGTGATGTGGAAATG 57.316 40.909 0.00 0.00 0.00 2.32
146 147 4.943093 TCATGTCGAATGTGATGTGGAAAT 59.057 37.500 0.00 0.00 0.00 2.17
147 148 4.322567 TCATGTCGAATGTGATGTGGAAA 58.677 39.130 0.00 0.00 0.00 3.13
148 149 3.936564 TCATGTCGAATGTGATGTGGAA 58.063 40.909 0.00 0.00 0.00 3.53
149 150 3.608316 TCATGTCGAATGTGATGTGGA 57.392 42.857 0.00 0.00 0.00 4.02
150 151 4.154737 ACTTTCATGTCGAATGTGATGTGG 59.845 41.667 0.00 0.00 39.74 4.17
151 152 5.287170 ACTTTCATGTCGAATGTGATGTG 57.713 39.130 0.00 0.00 39.74 3.21
152 153 5.947228 AACTTTCATGTCGAATGTGATGT 57.053 34.783 0.00 0.00 40.19 3.06
153 154 7.964559 ACAATAACTTTCATGTCGAATGTGATG 59.035 33.333 0.00 0.00 40.19 3.07
154 155 7.964559 CACAATAACTTTCATGTCGAATGTGAT 59.035 33.333 0.00 0.00 40.19 3.06
155 156 7.297391 CACAATAACTTTCATGTCGAATGTGA 58.703 34.615 0.00 0.00 40.19 3.58
156 157 6.032775 GCACAATAACTTTCATGTCGAATGTG 59.967 38.462 0.00 0.00 40.19 3.21
157 158 6.086222 GCACAATAACTTTCATGTCGAATGT 58.914 36.000 0.00 0.00 42.22 2.71
158 159 6.085573 TGCACAATAACTTTCATGTCGAATG 58.914 36.000 0.00 0.00 35.42 2.67
159 160 6.252967 TGCACAATAACTTTCATGTCGAAT 57.747 33.333 0.00 0.00 32.32 3.34
160 161 5.681337 TGCACAATAACTTTCATGTCGAA 57.319 34.783 0.00 0.00 0.00 3.71
161 162 5.411053 TCATGCACAATAACTTTCATGTCGA 59.589 36.000 0.00 0.00 34.56 4.20
162 163 5.509272 GTCATGCACAATAACTTTCATGTCG 59.491 40.000 0.00 0.00 34.56 4.35
163 164 5.801947 GGTCATGCACAATAACTTTCATGTC 59.198 40.000 0.00 0.00 34.56 3.06
164 165 5.619757 CGGTCATGCACAATAACTTTCATGT 60.620 40.000 0.00 0.00 34.56 3.21
165 166 4.794762 CGGTCATGCACAATAACTTTCATG 59.205 41.667 0.00 0.00 34.32 3.07
166 167 4.699735 TCGGTCATGCACAATAACTTTCAT 59.300 37.500 0.00 0.00 0.00 2.57
167 168 4.068599 TCGGTCATGCACAATAACTTTCA 58.931 39.130 0.00 0.00 0.00 2.69
168 169 4.154195 AGTCGGTCATGCACAATAACTTTC 59.846 41.667 0.00 0.00 0.00 2.62
169 170 4.072131 AGTCGGTCATGCACAATAACTTT 58.928 39.130 0.00 0.00 0.00 2.66
170 171 3.436704 CAGTCGGTCATGCACAATAACTT 59.563 43.478 0.00 0.00 0.00 2.66
171 172 3.002791 CAGTCGGTCATGCACAATAACT 58.997 45.455 0.00 0.00 0.00 2.24
172 173 2.095853 CCAGTCGGTCATGCACAATAAC 59.904 50.000 0.00 0.00 0.00 1.89
173 174 2.355197 CCAGTCGGTCATGCACAATAA 58.645 47.619 0.00 0.00 0.00 1.40
174 175 1.406751 CCCAGTCGGTCATGCACAATA 60.407 52.381 0.00 0.00 0.00 1.90
175 176 0.677731 CCCAGTCGGTCATGCACAAT 60.678 55.000 0.00 0.00 0.00 2.71
176 177 1.302431 CCCAGTCGGTCATGCACAA 60.302 57.895 0.00 0.00 0.00 3.33
177 178 1.763546 TTCCCAGTCGGTCATGCACA 61.764 55.000 0.00 0.00 0.00 4.57
178 179 1.003839 TTCCCAGTCGGTCATGCAC 60.004 57.895 0.00 0.00 0.00 4.57
179 180 1.003839 GTTCCCAGTCGGTCATGCA 60.004 57.895 0.00 0.00 0.00 3.96
180 181 0.605319 TTGTTCCCAGTCGGTCATGC 60.605 55.000 0.00 0.00 0.00 4.06
181 182 1.806542 CTTTGTTCCCAGTCGGTCATG 59.193 52.381 0.00 0.00 0.00 3.07
182 183 1.271379 CCTTTGTTCCCAGTCGGTCAT 60.271 52.381 0.00 0.00 0.00 3.06
183 184 0.107831 CCTTTGTTCCCAGTCGGTCA 59.892 55.000 0.00 0.00 0.00 4.02
184 185 1.235281 GCCTTTGTTCCCAGTCGGTC 61.235 60.000 0.00 0.00 0.00 4.79
185 186 1.228154 GCCTTTGTTCCCAGTCGGT 60.228 57.895 0.00 0.00 0.00 4.69
186 187 0.821711 TTGCCTTTGTTCCCAGTCGG 60.822 55.000 0.00 0.00 0.00 4.79
187 188 0.310854 GTTGCCTTTGTTCCCAGTCG 59.689 55.000 0.00 0.00 0.00 4.18
188 189 0.310854 CGTTGCCTTTGTTCCCAGTC 59.689 55.000 0.00 0.00 0.00 3.51
189 190 0.106918 TCGTTGCCTTTGTTCCCAGT 60.107 50.000 0.00 0.00 0.00 4.00
190 191 1.068333 CATCGTTGCCTTTGTTCCCAG 60.068 52.381 0.00 0.00 0.00 4.45
191 192 0.958091 CATCGTTGCCTTTGTTCCCA 59.042 50.000 0.00 0.00 0.00 4.37
192 193 1.068541 GTCATCGTTGCCTTTGTTCCC 60.069 52.381 0.00 0.00 0.00 3.97
193 194 1.880027 AGTCATCGTTGCCTTTGTTCC 59.120 47.619 0.00 0.00 0.00 3.62
194 195 3.626028 AAGTCATCGTTGCCTTTGTTC 57.374 42.857 0.00 0.00 0.00 3.18
195 196 3.252458 GGTAAGTCATCGTTGCCTTTGTT 59.748 43.478 0.00 0.00 0.00 2.83
196 197 2.812011 GGTAAGTCATCGTTGCCTTTGT 59.188 45.455 0.00 0.00 0.00 2.83
197 198 2.811431 TGGTAAGTCATCGTTGCCTTTG 59.189 45.455 0.00 0.00 31.36 2.77
198 199 3.074412 CTGGTAAGTCATCGTTGCCTTT 58.926 45.455 0.00 0.00 31.36 3.11
199 200 2.038557 ACTGGTAAGTCATCGTTGCCTT 59.961 45.455 0.00 0.00 31.36 4.35
200 201 1.623811 ACTGGTAAGTCATCGTTGCCT 59.376 47.619 0.00 0.00 31.36 4.75
201 202 2.094762 ACTGGTAAGTCATCGTTGCC 57.905 50.000 0.00 0.00 26.77 4.52
202 203 3.064207 TCAACTGGTAAGTCATCGTTGC 58.936 45.455 0.00 0.00 34.77 4.17
203 204 5.171476 AGATCAACTGGTAAGTCATCGTTG 58.829 41.667 0.00 0.00 34.77 4.10
204 205 5.186021 AGAGATCAACTGGTAAGTCATCGTT 59.814 40.000 0.00 0.00 34.77 3.85
205 206 4.707448 AGAGATCAACTGGTAAGTCATCGT 59.293 41.667 0.00 0.00 34.77 3.73
206 207 5.255710 AGAGATCAACTGGTAAGTCATCG 57.744 43.478 0.00 0.00 34.77 3.84
207 208 6.045955 GGAAGAGATCAACTGGTAAGTCATC 58.954 44.000 0.00 0.00 34.77 2.92
208 209 5.104735 GGGAAGAGATCAACTGGTAAGTCAT 60.105 44.000 0.00 0.00 34.77 3.06
209 210 4.223032 GGGAAGAGATCAACTGGTAAGTCA 59.777 45.833 0.00 0.00 34.77 3.41
210 211 4.383226 GGGGAAGAGATCAACTGGTAAGTC 60.383 50.000 0.00 0.00 34.77 3.01
211 212 3.519913 GGGGAAGAGATCAACTGGTAAGT 59.480 47.826 0.00 0.00 38.71 2.24
212 213 3.519510 TGGGGAAGAGATCAACTGGTAAG 59.480 47.826 0.00 0.00 0.00 2.34
213 214 3.526899 TGGGGAAGAGATCAACTGGTAA 58.473 45.455 0.00 0.00 0.00 2.85
214 215 3.199442 TGGGGAAGAGATCAACTGGTA 57.801 47.619 0.00 0.00 0.00 3.25
215 216 2.044793 TGGGGAAGAGATCAACTGGT 57.955 50.000 0.00 0.00 0.00 4.00
216 217 2.422519 CCATGGGGAAGAGATCAACTGG 60.423 54.545 2.85 0.00 35.59 4.00
217 218 2.240667 ACCATGGGGAAGAGATCAACTG 59.759 50.000 18.09 0.00 38.05 3.16
218 219 2.566746 ACCATGGGGAAGAGATCAACT 58.433 47.619 18.09 0.00 38.05 3.16
219 220 3.019564 CAACCATGGGGAAGAGATCAAC 58.980 50.000 18.09 0.00 38.05 3.18
220 221 2.025037 CCAACCATGGGGAAGAGATCAA 60.025 50.000 18.09 0.00 43.51 2.57
221 222 1.565759 CCAACCATGGGGAAGAGATCA 59.434 52.381 18.09 0.00 43.51 2.92
222 223 2.355010 CCAACCATGGGGAAGAGATC 57.645 55.000 18.09 0.00 43.51 2.75
233 234 4.694987 AACCCCGCCCCAACCATG 62.695 66.667 0.00 0.00 0.00 3.66
234 235 4.694987 CAACCCCGCCCCAACCAT 62.695 66.667 0.00 0.00 0.00 3.55
287 288 4.304110 TGTGTAGGTAAGAGACGCAAAAG 58.696 43.478 0.00 0.00 31.00 2.27
302 303 4.207891 ACTAGACAGGCAAATGTGTAGG 57.792 45.455 18.20 6.57 46.20 3.18
392 427 5.560953 CGACAACAAGAGGAATTTCCTGTTC 60.561 44.000 22.64 11.13 45.88 3.18
414 449 1.135083 GGGAAGAGATCAGCGTTTCGA 60.135 52.381 0.00 0.00 0.00 3.71
595 630 4.680237 TGCCTCGCGTTGGTCAGG 62.680 66.667 18.60 12.67 0.00 3.86
617 652 8.107399 ACTAGTACTGGTTAAATTCTTTTGGC 57.893 34.615 5.98 0.00 0.00 4.52
622 657 9.716531 GGTTGTACTAGTACTGGTTAAATTCTT 57.283 33.333 28.56 0.00 37.00 2.52
624 659 8.929746 GTGGTTGTACTAGTACTGGTTAAATTC 58.070 37.037 28.56 13.09 37.00 2.17
627 662 7.358770 TGTGGTTGTACTAGTACTGGTTAAA 57.641 36.000 28.56 14.06 37.00 1.52
628 663 6.975196 TGTGGTTGTACTAGTACTGGTTAA 57.025 37.500 28.56 14.69 37.00 2.01
629 664 6.720748 TCATGTGGTTGTACTAGTACTGGTTA 59.279 38.462 28.56 14.14 37.00 2.85
632 667 5.654603 TCATGTGGTTGTACTAGTACTGG 57.345 43.478 28.56 4.89 37.00 4.00
638 673 4.566759 CGGAACATCATGTGGTTGTACTAG 59.433 45.833 8.99 0.00 0.00 2.57
639 674 4.500127 CGGAACATCATGTGGTTGTACTA 58.500 43.478 8.99 0.00 0.00 1.82
672 707 2.816958 CTGGTAGCAGTGCAGCGG 60.817 66.667 19.20 13.60 40.15 5.52
673 708 3.494336 GCTGGTAGCAGTGCAGCG 61.494 66.667 22.21 10.09 41.89 5.18
683 718 1.077930 ACATGGCTGCTGCTGGTAG 60.078 57.895 15.64 4.36 39.59 3.18
684 719 1.377594 CACATGGCTGCTGCTGGTA 60.378 57.895 15.64 0.64 39.59 3.25
685 720 2.128290 TACACATGGCTGCTGCTGGT 62.128 55.000 15.64 8.30 39.59 4.00
686 721 0.750546 ATACACATGGCTGCTGCTGG 60.751 55.000 15.64 7.69 39.59 4.85
737 978 1.886542 GTTCTTTTCAGGGCGTTGGAT 59.113 47.619 0.00 0.00 0.00 3.41
738 979 1.133915 AGTTCTTTTCAGGGCGTTGGA 60.134 47.619 0.00 0.00 0.00 3.53
798 1039 0.037590 TGTGGCCTCCCATGTACAAC 59.962 55.000 3.32 0.00 44.51 3.32
799 1040 0.998928 ATGTGGCCTCCCATGTACAA 59.001 50.000 3.32 0.00 44.51 2.41
800 1041 0.255604 CATGTGGCCTCCCATGTACA 59.744 55.000 17.37 0.00 44.51 2.90
801 1042 1.103398 GCATGTGGCCTCCCATGTAC 61.103 60.000 22.87 10.48 44.51 2.90
843 1084 2.804647 TGTGGCGTATCGTTATCACTG 58.195 47.619 0.00 0.00 0.00 3.66
899 1174 0.108138 CCCGTCTTTGCGAGGAGAAT 60.108 55.000 0.00 0.00 0.00 2.40
927 1205 0.797629 TCGCGCGCGTATACTTTTCA 60.798 50.000 46.54 25.37 40.74 2.69
957 1258 1.875364 GGGATAACGCGGTGTCGAC 60.875 63.158 14.96 9.11 39.00 4.20
979 1289 4.415150 CCATGCTCGGGGTGCAGT 62.415 66.667 0.00 0.00 44.04 4.40
997 1307 3.899052 TTGCACCGGTACTTATAGCTT 57.101 42.857 6.87 0.00 0.00 3.74
1061 1376 6.238786 CGTGTAATGTATAGCTCAAGGAGAGT 60.239 42.308 0.00 0.00 46.47 3.24
1064 1379 6.073327 TCGTGTAATGTATAGCTCAAGGAG 57.927 41.667 0.00 0.00 0.00 3.69
1067 1382 4.681942 GGCTCGTGTAATGTATAGCTCAAG 59.318 45.833 0.00 0.00 0.00 3.02
1090 1413 0.743688 AGCTCACCTACAGCTGATCG 59.256 55.000 23.35 8.91 45.85 3.69
1402 1743 3.240884 CTGACTGACTGATTGACTGACG 58.759 50.000 0.00 0.00 0.00 4.35
1409 1750 3.987547 ACACTGACTGACTGACTGATTG 58.012 45.455 0.00 0.00 0.00 2.67
1410 1751 4.100035 TCAACACTGACTGACTGACTGATT 59.900 41.667 0.00 0.00 0.00 2.57
1411 1752 3.638627 TCAACACTGACTGACTGACTGAT 59.361 43.478 0.00 0.00 0.00 2.90
1412 1753 3.023832 TCAACACTGACTGACTGACTGA 58.976 45.455 0.00 0.00 0.00 3.41
1413 1754 3.443099 TCAACACTGACTGACTGACTG 57.557 47.619 0.00 0.00 0.00 3.51
1414 1755 4.679373 AATCAACACTGACTGACTGACT 57.321 40.909 0.00 0.00 33.30 3.41
1415 1756 4.084849 CGAAATCAACACTGACTGACTGAC 60.085 45.833 0.00 0.00 33.30 3.51
1416 1757 4.051237 CGAAATCAACACTGACTGACTGA 58.949 43.478 0.00 0.00 33.30 3.41
1417 1758 3.185188 CCGAAATCAACACTGACTGACTG 59.815 47.826 0.00 0.00 33.30 3.51
1418 1759 3.393800 CCGAAATCAACACTGACTGACT 58.606 45.455 0.00 0.00 33.30 3.41
1419 1760 2.480419 CCCGAAATCAACACTGACTGAC 59.520 50.000 0.00 0.00 33.30 3.51
1420 1761 2.549992 CCCCGAAATCAACACTGACTGA 60.550 50.000 0.00 0.00 33.30 3.41
1421 1762 1.806542 CCCCGAAATCAACACTGACTG 59.193 52.381 0.00 0.00 33.30 3.51
1422 1763 1.882352 GCCCCGAAATCAACACTGACT 60.882 52.381 0.00 0.00 33.30 3.41
1423 1764 0.521735 GCCCCGAAATCAACACTGAC 59.478 55.000 0.00 0.00 33.30 3.51
1424 1765 0.400213 AGCCCCGAAATCAACACTGA 59.600 50.000 0.00 0.00 35.56 3.41
1425 1766 0.523072 CAGCCCCGAAATCAACACTG 59.477 55.000 0.00 0.00 0.00 3.66
1426 1767 1.244019 GCAGCCCCGAAATCAACACT 61.244 55.000 0.00 0.00 0.00 3.55
1427 1768 1.212751 GCAGCCCCGAAATCAACAC 59.787 57.895 0.00 0.00 0.00 3.32
1428 1769 1.976474 GGCAGCCCCGAAATCAACA 60.976 57.895 0.00 0.00 0.00 3.33
1462 1855 3.098958 CGGCATGCACAAACACGC 61.099 61.111 21.36 0.00 0.00 5.34
1615 2008 1.067916 GGCAGGCCATAATTTGCGG 59.932 57.895 5.01 0.00 37.43 5.69
1631 2028 1.538047 TGTGGAAGATGCTTCAAGGC 58.462 50.000 9.16 0.00 0.00 4.35
1756 2182 1.750682 GCTTATTTGGATCAGGCCGGT 60.751 52.381 1.90 0.00 0.00 5.28
1760 2187 3.378427 ACGAAAGCTTATTTGGATCAGGC 59.622 43.478 0.00 0.00 0.00 4.85
1832 2260 3.256631 ACAAATCTCTTCGGCAAAGCAAT 59.743 39.130 0.00 0.00 34.76 3.56
1878 2310 1.503542 GACTGCCTGGTCAATTGCG 59.496 57.895 0.00 0.00 36.35 4.85
1881 2317 1.145738 AGTTGGACTGCCTGGTCAATT 59.854 47.619 0.00 0.00 37.91 2.32
1987 2423 0.460109 TCATCCAGAACCACATCGCG 60.460 55.000 0.00 0.00 0.00 5.87
2104 2540 6.364976 CGCCGTTGATGATATTAGTGATTACA 59.635 38.462 0.00 0.00 0.00 2.41
2233 2669 0.321671 AGTTCCGCTGTGTGTAGCAT 59.678 50.000 0.00 0.00 43.87 3.79
2273 2709 3.185797 AGACACTTTTTCATAACGCGTCC 59.814 43.478 14.44 0.00 0.00 4.79
2274 2710 4.385244 AGACACTTTTTCATAACGCGTC 57.615 40.909 14.44 0.00 0.00 5.19
2287 2723 6.701841 CACGATGGCATAAGTATAGACACTTT 59.298 38.462 0.00 0.00 39.45 2.66
2309 2745 9.734620 ATCACATGTTGAATTATTTATTCCACG 57.265 29.630 0.00 0.00 40.19 4.94
2386 2822 9.491675 AGTTGATGCAATGTGATTTTATTCAAA 57.508 25.926 0.00 0.00 0.00 2.69
2389 2825 7.546667 ACCAGTTGATGCAATGTGATTTTATTC 59.453 33.333 0.00 0.00 0.00 1.75
2400 2836 5.927689 ACATAACAAACCAGTTGATGCAATG 59.072 36.000 0.00 0.00 39.87 2.82
2403 2839 5.163468 ACAACATAACAAACCAGTTGATGCA 60.163 36.000 10.18 0.00 41.41 3.96
2404 2840 5.288804 ACAACATAACAAACCAGTTGATGC 58.711 37.500 10.18 0.00 41.41 3.91
2405 2841 9.554724 GTATACAACATAACAAACCAGTTGATG 57.445 33.333 10.18 0.00 41.41 3.07
2407 2843 7.571613 GCGTATACAACATAACAAACCAGTTGA 60.572 37.037 10.18 0.00 41.41 3.18
2408 2844 6.521821 GCGTATACAACATAACAAACCAGTTG 59.478 38.462 3.32 0.00 43.71 3.16
2409 2845 6.205076 TGCGTATACAACATAACAAACCAGTT 59.795 34.615 3.32 0.00 35.55 3.16
2410 2846 5.701750 TGCGTATACAACATAACAAACCAGT 59.298 36.000 3.32 0.00 0.00 4.00
2411 2847 6.171932 TGCGTATACAACATAACAAACCAG 57.828 37.500 3.32 0.00 0.00 4.00
2412 2848 6.427242 TCTTGCGTATACAACATAACAAACCA 59.573 34.615 3.32 0.00 0.00 3.67
2413 2849 6.833839 TCTTGCGTATACAACATAACAAACC 58.166 36.000 3.32 0.00 0.00 3.27
2414 2850 8.172484 TCATCTTGCGTATACAACATAACAAAC 58.828 33.333 3.32 0.00 0.00 2.93
2415 2851 8.257830 TCATCTTGCGTATACAACATAACAAA 57.742 30.769 3.32 0.00 0.00 2.83
2428 2864 5.696724 GCCTGTTATACTTCATCTTGCGTAT 59.303 40.000 0.00 0.00 0.00 3.06
2432 2868 3.248602 CGGCCTGTTATACTTCATCTTGC 59.751 47.826 0.00 0.00 0.00 4.01
2439 2875 2.167900 ACTGGTCGGCCTGTTATACTTC 59.832 50.000 13.43 0.00 43.21 3.01
2441 2877 1.480954 CACTGGTCGGCCTGTTATACT 59.519 52.381 16.74 0.00 43.79 2.12
2481 2917 0.463833 GCTATCACACTTTCCCCGGG 60.464 60.000 15.80 15.80 0.00 5.73
2493 2929 3.612860 CGGACAAGTAACACAGCTATCAC 59.387 47.826 0.00 0.00 0.00 3.06
2507 2943 0.179056 CCACTGTTGGTCGGACAAGT 60.179 55.000 10.76 5.01 38.23 3.16
2517 2953 2.540145 GACGTAAGGCCACTGTTGG 58.460 57.895 5.01 0.00 42.36 3.77
2530 2966 3.118920 ACCATGGATTGATTCGTGACGTA 60.119 43.478 21.47 0.00 0.00 3.57
2532 2968 2.279741 ACCATGGATTGATTCGTGACG 58.720 47.619 21.47 0.00 0.00 4.35
2547 2983 3.056607 GTCCTTCAAACCATCCAACCATG 60.057 47.826 0.00 0.00 0.00 3.66
2548 2984 3.165071 GTCCTTCAAACCATCCAACCAT 58.835 45.455 0.00 0.00 0.00 3.55
2551 2987 2.955660 TGTGTCCTTCAAACCATCCAAC 59.044 45.455 0.00 0.00 0.00 3.77
2554 2990 3.888930 TCTTTGTGTCCTTCAAACCATCC 59.111 43.478 0.00 0.00 32.48 3.51
2562 2998 4.974645 ACCAGTATCTTTGTGTCCTTCA 57.025 40.909 0.00 0.00 0.00 3.02
2596 3032 5.998363 GTCAAGTCTAAGATTTGAACCCTGT 59.002 40.000 0.00 0.00 39.33 4.00
2607 3043 6.257411 CGAGCATCAAATGTCAAGTCTAAGAT 59.743 38.462 0.00 0.00 33.17 2.40
2609 3045 5.726138 GCGAGCATCAAATGTCAAGTCTAAG 60.726 44.000 0.00 0.00 33.17 2.18
2610 3046 4.093408 GCGAGCATCAAATGTCAAGTCTAA 59.907 41.667 0.00 0.00 33.17 2.10
2611 3047 3.618594 GCGAGCATCAAATGTCAAGTCTA 59.381 43.478 0.00 0.00 33.17 2.59
2613 3049 2.160219 TGCGAGCATCAAATGTCAAGTC 59.840 45.455 0.00 0.00 33.17 3.01
2625 3061 8.961294 ATAAATTGAGAAATAATGCGAGCATC 57.039 30.769 11.26 0.00 35.31 3.91
2626 3062 9.754382 AAATAAATTGAGAAATAATGCGAGCAT 57.246 25.926 4.52 4.52 38.46 3.79
2643 3079 7.598493 ACATCACCGAAAACCTGAAATAAATTG 59.402 33.333 0.00 0.00 0.00 2.32
2644 3080 7.666623 ACATCACCGAAAACCTGAAATAAATT 58.333 30.769 0.00 0.00 0.00 1.82
2656 3092 4.499040 CACTGAACAAACATCACCGAAAAC 59.501 41.667 0.00 0.00 0.00 2.43
2658 3094 3.066064 CCACTGAACAAACATCACCGAAA 59.934 43.478 0.00 0.00 0.00 3.46
2660 3096 2.217750 CCACTGAACAAACATCACCGA 58.782 47.619 0.00 0.00 0.00 4.69
2664 3100 2.441375 TCCTCCCACTGAACAAACATCA 59.559 45.455 0.00 0.00 0.00 3.07
2671 3107 2.583441 CGCCTCCTCCCACTGAACA 61.583 63.158 0.00 0.00 0.00 3.18
2689 3125 2.165301 CCTCGCAATCGACGGGAAC 61.165 63.158 0.00 0.00 40.21 3.62
2693 3129 3.554692 GCACCTCGCAATCGACGG 61.555 66.667 0.00 0.00 40.21 4.79
2694 3130 3.902063 CGCACCTCGCAATCGACG 61.902 66.667 0.00 0.00 42.60 5.12
2695 3131 2.809601 ACGCACCTCGCAATCGAC 60.810 61.111 0.00 0.00 42.60 4.20
2696 3132 2.809174 CACGCACCTCGCAATCGA 60.809 61.111 0.00 0.00 42.60 3.59
2697 3133 3.112075 ACACGCACCTCGCAATCG 61.112 61.111 0.00 0.00 42.60 3.34
2698 3134 2.476051 CACACGCACCTCGCAATC 59.524 61.111 0.00 0.00 42.60 2.67
2699 3135 2.443260 TACCACACGCACCTCGCAAT 62.443 55.000 0.00 0.00 42.60 3.56
2701 3137 2.443260 AATACCACACGCACCTCGCA 62.443 55.000 0.00 0.00 42.60 5.10
2702 3138 1.693083 GAATACCACACGCACCTCGC 61.693 60.000 0.00 0.00 43.23 5.03
2703 3139 1.410737 CGAATACCACACGCACCTCG 61.411 60.000 0.00 0.00 45.38 4.63
2704 3140 0.389426 ACGAATACCACACGCACCTC 60.389 55.000 0.00 0.00 0.00 3.85
2705 3141 0.889994 TACGAATACCACACGCACCT 59.110 50.000 0.00 0.00 0.00 4.00
2706 3142 1.712401 TTACGAATACCACACGCACC 58.288 50.000 0.00 0.00 0.00 5.01
2707 3143 3.791993 TTTTACGAATACCACACGCAC 57.208 42.857 0.00 0.00 0.00 5.34
2708 3144 4.247258 AGATTTTACGAATACCACACGCA 58.753 39.130 0.00 0.00 0.00 5.24
2709 3145 4.327898 TGAGATTTTACGAATACCACACGC 59.672 41.667 0.00 0.00 0.00 5.34
2711 3147 7.591006 TCTTGAGATTTTACGAATACCACAC 57.409 36.000 0.00 0.00 0.00 3.82
2712 3148 7.201609 GCATCTTGAGATTTTACGAATACCACA 60.202 37.037 0.00 0.00 31.21 4.17
2713 3149 7.011482 AGCATCTTGAGATTTTACGAATACCAC 59.989 37.037 0.00 0.00 31.21 4.16
2714 3150 7.047891 AGCATCTTGAGATTTTACGAATACCA 58.952 34.615 0.00 0.00 31.21 3.25
2719 3155 7.919091 ACGTATAGCATCTTGAGATTTTACGAA 59.081 33.333 18.47 0.00 31.21 3.85
2721 3157 7.358435 CCACGTATAGCATCTTGAGATTTTACG 60.358 40.741 14.03 14.03 31.21 3.18
2722 3158 7.438459 ACCACGTATAGCATCTTGAGATTTTAC 59.562 37.037 0.00 0.00 31.21 2.01
2736 3173 2.943690 GAGAGACTGACCACGTATAGCA 59.056 50.000 0.00 0.00 0.00 3.49
2737 3174 2.032722 CGAGAGACTGACCACGTATAGC 60.033 54.545 0.00 0.00 0.00 2.97
2744 3181 1.704070 GCTTTCGAGAGACTGACCAC 58.296 55.000 7.23 0.00 41.84 4.16
2745 3182 0.241213 CGCTTTCGAGAGACTGACCA 59.759 55.000 7.23 0.00 41.84 4.02
2746 3183 1.073768 GCGCTTTCGAGAGACTGACC 61.074 60.000 7.23 0.00 41.84 4.02
2747 3184 0.109504 AGCGCTTTCGAGAGACTGAC 60.110 55.000 2.64 0.00 41.84 3.51
2759 3196 1.625818 CCCTATCCCTATGAGCGCTTT 59.374 52.381 13.26 5.01 0.00 3.51
2761 3198 0.115349 ACCCTATCCCTATGAGCGCT 59.885 55.000 11.27 11.27 0.00 5.92
2763 3200 1.273606 CACACCCTATCCCTATGAGCG 59.726 57.143 0.00 0.00 0.00 5.03
2767 3204 1.048601 ACGCACACCCTATCCCTATG 58.951 55.000 0.00 0.00 0.00 2.23
2774 3211 0.108992 CACACGTACGCACACCCTAT 60.109 55.000 16.72 0.00 0.00 2.57
2779 3216 0.856641 ATGAACACACGTACGCACAC 59.143 50.000 16.72 3.13 0.00 3.82
2787 3224 2.832129 ACTCATCCCTATGAACACACGT 59.168 45.455 0.00 0.00 41.57 4.49
2788 3225 3.190079 CACTCATCCCTATGAACACACG 58.810 50.000 0.00 0.00 41.57 4.49
2789 3226 4.207891 ACACTCATCCCTATGAACACAC 57.792 45.455 0.00 0.00 41.57 3.82
2800 3237 0.525668 CACGAGCGTACACTCATCCC 60.526 60.000 11.28 0.00 36.42 3.85
2803 3240 2.422479 ACATACACGAGCGTACACTCAT 59.578 45.455 11.28 0.00 36.42 2.90
2805 3242 2.539346 ACATACACGAGCGTACACTC 57.461 50.000 0.53 0.53 0.00 3.51
2813 3250 3.360765 CGAAATCGCTTACATACACGAGC 60.361 47.826 0.00 0.00 38.04 5.03
2814 3251 4.033019 TCGAAATCGCTTACATACACGAG 58.967 43.478 0.00 0.00 38.04 4.18
2816 3253 4.948864 ATCGAAATCGCTTACATACACG 57.051 40.909 0.00 0.00 39.60 4.49
2825 3262 7.997107 TTACATAGTACAATCGAAATCGCTT 57.003 32.000 0.00 0.00 39.60 4.68
2852 3289 4.142138 CGAGACATAAGGGTACTGCTTCTT 60.142 45.833 0.00 0.00 0.00 2.52
2854 3291 3.707793 CGAGACATAAGGGTACTGCTTC 58.292 50.000 0.00 0.00 0.00 3.86
2873 3310 2.268802 CGAGGCTGCCCTATAGCGA 61.269 63.158 16.57 0.00 43.12 4.93
2874 3311 2.259818 CGAGGCTGCCCTATAGCG 59.740 66.667 16.57 6.19 43.12 4.26
2895 3332 4.482386 TGACATAGTACAACGCTGTCTTC 58.518 43.478 0.00 0.00 36.24 2.87
2900 3337 3.123804 GGGATGACATAGTACAACGCTG 58.876 50.000 0.00 0.00 0.00 5.18
2909 3346 3.548770 CTGCATGTTGGGATGACATAGT 58.451 45.455 0.00 0.00 36.04 2.12
2910 3347 2.882761 CCTGCATGTTGGGATGACATAG 59.117 50.000 0.00 0.00 36.04 2.23
2913 3350 0.697658 TCCTGCATGTTGGGATGACA 59.302 50.000 0.00 0.00 0.00 3.58
2914 3351 1.386533 CTCCTGCATGTTGGGATGAC 58.613 55.000 0.00 0.00 0.00 3.06
2917 3357 1.133575 CATCCTCCTGCATGTTGGGAT 60.134 52.381 0.00 0.00 34.36 3.85
2920 3360 2.228059 GATCATCCTCCTGCATGTTGG 58.772 52.381 0.00 0.00 0.00 3.77
2924 3364 5.531122 AAAAATGATCATCCTCCTGCATG 57.469 39.130 9.06 0.00 0.00 4.06
2950 3390 9.996554 AGGTAAAAACAATAAAGATGGAAAAGG 57.003 29.630 0.00 0.00 0.00 3.11
3183 3634 9.558396 TCTTTTCAAATGCTTTGGATTAACATT 57.442 25.926 8.23 0.00 40.98 2.71
3184 3635 9.558396 TTCTTTTCAAATGCTTTGGATTAACAT 57.442 25.926 8.23 0.00 40.98 2.71
3185 3636 8.954950 TTCTTTTCAAATGCTTTGGATTAACA 57.045 26.923 8.23 0.00 40.98 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.