>input_sequence_54715
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-----------------------------CTATAAGTACCGGTGCAAA-----CCAAGCAGCAGCTTCATCACACAGGCC
TCTTGCAAGCTCTCCACTCTCCTTGAGCTATA--------CATTACACGAGCCGATCAGCTGTAGGTG--AGCTAGTGAG
C--ATGGCGCGGTTTGCTGCGCT------------CGCCGCGCTTCTGCTCGCCGTGGCGGTGGGCGGCGCCGCGGCGCA
GGGCGTGGGCTCCGTCATCACGCAGTCGATGTACGCGAGCATGCTGCCCAACCGCGACAACTCGCTGTGCCCGGCCAGGG
GGTTCTACACGTACGACGCCTTCATCGCCGCCGCCAACACCTTCCCGGGCTTCGGCACCACCGGCAGCGCCGACGACGTC
AAGCGCGAGCTCGCCGCCTTCTTCGGCCAGACCTCACACGAGACCACCGGTACG--TCCGTCCGTCAGTCAATCAGTCAG
TCAGTCAGTGTTGATTTCGG-----------------------------GGCTGCCTTGATTAACCGAA-----------
------------GTGCGTGTTTGTGCATGCCGTGCCAACGTGTAGGCGGGACGAGAGGCGCCGCCGACCAGTTCCAGTGG
GGCTACTGCTTCAAGGAGGAGATAAACAAGGCCACGTCCCCACCCTACTATGGACGGGGACCCATTCAATTGACAGGGTG
AGCAAAACCGCAAATTA-TG---GCCTGCC---------TTGAAGCATCT------------TCCACATG-----CAAAA
TGATATATTGGTCAACACAAATATCACAGACTCAAATAATCTGTAG-A--AGAAATCTGCTTGAAAAGTACAGCAGTGTT
GACATTCTAGCTAGCCGCTAAA-CCGGCCTGATCCAAATAAGCTTTCGTTTTAGCGTGCAAT-AATTGTTAATAACAACA
AATACCCAGCTGGGTCTTGATTGCTTTGCCGAAGAGATTTGTTCT-GATGATAAAATAA---TTCCTTGCGC----AATT
GACCAGGCAGTCCAACTACGATCTTGCCGGGAGAGCGATCGGGAAGGACCTGGTGAGCAACCCGGACCTGGTCTCCACGG
ACGCGGTGGTGTCCTTCAGGACCGCGATGTGGTTCTGGATGACGGCGCAGGGCAACAAGCCTTCGAGCCACGACGTCGCC
CTAGGCCGCTGGACGCCGACCGCCGCCGACACCGCTGCTGGTCGGGTGCCTGGATACGGTGTAATCACTAATATCATCAA
CGGCGGGCTCGAGTGCGGCATGGGCCGGAACGATGCCAACGTTGATCGCATCGGCTACTACATGCGCTACTGCGGCATGC
TTGGCACGGCCACCGGAGGCAACCTCGAATGCTACACACAGCGGAACTTCGCTAGCTAGACAGTGTATGGACGCGTTATG
AAAAAGTGTCTATACTTATGCCATCGTGGA--------------------------------------------------
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>chr1D_1_TraesCS1D01G207000
TGACTTTTTTTTTACCGTCAAATCGCTCTCTTTTTCTTCCTTTATTTGTTCTCTCAACCAAAACTGTTCCTCGGAGTGAT
ACGTGAATGGATAAATTTACAACCATACTAAAATATCAAAAGATAAAAACATATTTAACAAAGAACATTTCCACATCACA
TTCGACATGAAAGTTATTGTGCATGACCGACTGGGAACAAAGGCAACGATGACTTACCAGTTGATCTCTTCCCCATGGTT
GGGGCGGGGTTGGAGATGCCCTTACTACTGGCAAGCGAGATGTACATCTTTTGCGTCTCTTACCTACACATTTGCCT---
-------------------------------GTCTAGTTTGTTCAACGCAAATTTTGGTCCGATTACTACCATGTTTTAT
CTACTGTATCAAATTTAAATAAAACAGAACAGGAAATTCCTCTTGTTGTCGAAACGCTGATCTCTTCCCTGCTCCAACCA
CCTATCTTTACCGAGTCCCAATCCATGTGATATTTGATGGCTTCGTGTTCGGTCTGGATTCGACCATTGGACGCCCAGCT
AGAGTTTTTCCACCAGCCGTCGACGACGTAGAAGCTTCTTCCAGTCCCCCCATCCATGCGCTGTACAAGCCTGACCAACG
CGAGGCACTGCGCCAAAAGAATTTAACCAGTACTAGTACAACCACATGATGTTCCGCAGCCCCCGGCCGCTGCACTGCTA
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CAGCAGCAGCCATGTGTATCTGTACACCGTCCC
AAGAAGTCTGCGCGTATATCCAACGCCCTGAAAAGAACTTGTTTGTGCAGACGTGTGGAATTCACGTAGAGATATGTAGT
TGTACATGGGAGGCCACATGCGTCTGCAAGCACGCGGCTGCGACAGTGATAACGATACGCC-------------------
---------------ACATGCGTCCATCGTTCAGTCACCGCGGCCCGTCAAATATTCTCCTCGCA---AAGACGGGCGCA
ACGTTGAAAAGTATACGCGCGCGAC-----------------------GGACCGTGCGTCGACACCGCGTTATCC-----
----CCGCACTGCACCCCGAGCATGGAAGCTATAAGTACCGGTGCAAA-----CCAAGCAGCAGCTTCATCACACAGGCC
TCTTGCAAGCTCTCCACTCTCCTTGAGCTATA--------CATTACACGAGCCGATCAGCTGTAGGTG--AGCTAGTGAG
C--ATGGCGCGGTTTGCTGCGCT------------CGCCGCGCTTCTGCTCGCCGTGGCGGTGGGCGGCGCCGCGGCGCA
GGGCGTGGGCTCCGTCATCACGCAGTCGATGTACGCGAGCATGCTGCCCAACCGCGACAACTCGCTGTGCCCGGCCAGGG
GGTTCTACACGTACGACGCCTTCATCGCCGCCGCCAACACCTTCCCGGGCTTCGGCACCACCGGCAGCGCCGACGACGTC
AAGCGCGAGCTCGCCGCCTTCTTCGGCCAGACCTCACACGAGACCACCGGTACG--TCCGTCCGTCAGTCAATCAGTCAG
TCAGTCAGTGTTGATTTCGG-----------------------------GGCTGCCTTGATTAACCGAA-----------
------------GTGCGTGTTTGTGCATGCCGTGCCAACGTGTAGGCGGGACGAGAGGCGCCGCCGACCAGTTCCAGTGG
GGCTACTGCTTCAAGGAGGAGATAAACAAGGCCACGTCCCCACCCTACTATGGACGGGGACCCATTCAATTGACAGGGTG
AGCAAAACCGCAAATTA-TG---GCCTGCC---------TTGAAGCATCT------------TCCACATG-----CAAAA
TGATATATTGGTCAACACAAATATCACAGACTCAAATAATCTGTAG-A--AGAAATCTGCTTGAAAAGTACAGCAGTGTT
GACATTCTAGCTAGCCGCTAAA-CCGGCCTGATCCAAATAAGCTTTCGTTTTAGCGTGCAAT-AATTGTTAATAACAACA
AATACCCAGCTGGGTCTTGATTGCTTTGCCGAAGAGATTTGTTCT-GATGATAAAATAA---TTCCTTGCGC----AATT
GACCAGGCAGTCCAACTACGATCTTGCCGGGAGAGCGATCGGGAAGGACCTGGTGAGCAACCCGGACCTGGTCTCCACGG
ACGCGGTGGTGTCCTTCAGGACCGCGATGTGGTTCTGGATGACGGCGCAGGGCAACAAGCCTTCGAGCCACGACGTCGCC
CTAGGCCGCTGGACGCCGACCGCCGCCGACACCGCTGCTGGTCGGGTGCCTGGATACGGTGTAATCACTAATATCATCAA
CGGCGGGCTCGAGTGCGGCATGGGCCGGAACGATGCCAACGTTGATCGCATCGGCTACTACATGCGCTACTGCGGCATGC
TTGGCACGGCCACCGGAGGCAACCTCGAATGCTACACACAGCGGAACTTCGCTAGCTAGACAGTGTATGGACGCGTTATG
AAAAAGTGTCTATACTTATGCCATCGTGGAATAAATAATTCAACATGTGATCAGTTGATTCGTATGGTAATATGACTAAG
TTGTTGTAACAAATTATGAAATTTGAATAAAATCACATTGCATCAACTGGTTTGTTATGTTGTATACGCAAGATGAAGTA
TAACAGGCCGACCAGTGTGGTAGCTGTGTTTTTTTTCCCGGGGAAAGTGTGATAGCTGTGTTACTTGTCCGACCAACAGT
GGCCTTACGTCACGAATCAATCCATGGTTGGATGGTTTGAAGGACACAAAGATACTGGTATCCCCAGCTCAACAGGGTTC
AAATCTTAGACTTGACATTTGATGCTCGCATTATTTCTCAATTTATTTCAGGTTTTCGGTGATGTTTGTTCAGTGGGAGG
AGGCGTTCCCGTCGATTGCGAGGTGCGTGTGGTATTCG-TAAAATCTCAAGATGCTATACGTGGTCAGTCTCTCGAAAGC
GCTCATAGGGATAGGGTGTGCGTACGTGTGTTCATAGGGATGAGTGTACGCTCGTGTATGTAAGCGATTTCGATTGTACT
ATGTAAAAAAGAAGCAGTACCCTTATGTCTCGCTATAGGGCAGCCTCGCCTGAAGACAGCGTTGTACTATG---TCATCC
CAACATGCAGGAGGATGATCATTTTTTTCCC-TTTTCCATCTTTATTGTTTTTACCTTTTGCTTTC-TTTTTTACTTTTA
TTTATACATCCAAATATTCTAAAC-------ATATATATTACCAAAAACACTCTCACATAAAACATTTGAAAAATGTTAC
TCAAGTATTTAAAAA-TATTAAATATGTATAGAAAAATGTTGTTCATGTATATGAAAAATTTATACAAAAAC-TATATAG
TGTGTGTTAAAAAATTTGATCATGTATTCAAAAAATGTTAATCCAAAGCATTTGAAAAGAATATTAATCCAAAGCATTTG
AAAAAATGTTAATCAAATATTGGAAAAATATCAATCAAGCATTTAAAAATGTTAATATGTATATAAAAAATGATTCTCAT
GTATA
>chr1B_239
TTGAGG--------------------------------------------------------------------------
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---GCGGGGTTGGAGATGCCCTTACTACTGGCAAGTGAGATGTACATTTTTTGTGTCTCTTATCTACACATTTGCCT---
-------------------------------GTCTAGTTTGTTCAACGCAAATTTTGGTCCGATTACTACCATGTTTTAT
CTACAGTATTAAATTTAATTAAAACACAACTGGAAATTCCTCTTGTTGACGAAACGCTGATCTCTTCCCTGCTC--ACCA
CCTATCTTTACCGAGTCCCGATCCATGTGATATTTGATGGCTTCGTGTTCGGTCTGGATTCGACCATTGGACGCCCAGCT
AGAGTTTTTCCACCAGCCGTCGACGACGTAGAAGCTTCTTCCAGTCCCCCCATCCATTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATCAGCAGCAACCATGTGTATCTGTACACCGTCGC
AGGAAGTCTGCGCGTATCACCAACGCCCTGAAAAGAACTTGTTTGTGCAGACGTGTGGAATTCACGTAGAAGTA--TA--
--TACATGGGAGGCCATATGCGTCTGCAAGCACGCGGCTGCGAGAGTGATAACGAGACGCC-------------------
---------------ACATGCGTCCATCGTCCAGTCACCGCGGCCCGTCAAATTTTCTCCCCGCA---AAGATGGGCGCA
ACGTGGAAAAGTATAGGCGCGCGAT-----------------------GGACCGTGCATCGTCACCGCGTTATCC-----
----CCGCGCTGCACCCCGAGCATGGCAGCTATAAGTACCGGTGCAAA-----CCAAGCAGCAGCTTCATCACACAGGCC
TCTTGCAAGCTCTCCT-------TGAGCTATAC--------ATTACACGAGC-GATCTGCTGTACGTG--AGCTAGTGAG
C--ATGGCGCGGTTTGCTGCGCT------------CGCCGCGCTTCTGCTCGCCGTGGCGGTGGGCGGCGCCGCCGCGCA
GGGCGTGGGATCCGTCATCACGCAGTCCATGTATGCGAGCATGCTGCCCAACCGCGACAACTCGCTGTGCCCGGCC-AGG
GGTTCTACACGTACGACGCCTTCATCGCCGCTGCCAACACCTTCCCGGGCTTCGGAACCACCGGCAGCGCGGACGATGTC
AAGCGCGAGCTCGCCGCCTTCTTCGGCCAGACCTCCCACGAGACCACCGGTACG--TCAGTCTGTCAGT-----------
---------GTTGATTTCGATTGTTGTTTTCAAC------GGAATTCGTGGCTGTCTTGATTAACCGAA-----------
------------GTACGTGTTTGTGCATTCCGTGCCAACGTGCAGGCGGGACGAGAGGCGCTGCCGACCAGTTCCAGTGG
GGCTACTGCTTCAAGGAGGAGATAAACAAGGCCACCTCTCCACCCTAATATGGGAGGGGACCCATTCAATTGACAGGGTG
AGCAAAATCGCAAATTA-TTATAGCT---TA------CTCTGAAGCATCT------------TCGACATG-----CAAAA
TGATATATAGGTCAACGAAAATATCACAGACTCAAATAATCTGTAG-A--AGAAATAACAACAAAGACCTGATCCAA---
--------------------------ACCTGATCCAAATAAGCTTTCGTTTTCGCGTGCAATTAATTGTTAATAACAACA
AAGACCCGGCTGGGTCTTGGTTGCTTTGCCGAAAAGGTT-GTTCT-GATGAACCAGTAA---TTCCTCGTGC----GAAT
GACCAGGCAGTCCAACTACGATCTCGCCGGGAGAGCGATCTGGAAGGACCTCGTGAGCAACCCGGGCCTAGTGTCCACGG
ATGCGGTGGTGTCCTTCAGGACGGCCATGTGGTTCTGGATGACGGCGCAAGGCAACAAGCCATCGTCCCACGACGTCGCC
CTCCGCCGCTGGACGCCGACGGCCGCCGATACCGCTGCCGGTCGGGTGCCTAGATACGGCGTAATCACCAATATCATCAA
CGGCGGGCTCGAGTGTGGCATGGGCCAGAACGATGCCAACGTCGATCGCATCGGCTACTACATGCGCTACTGTGGCATGC
TCGGCACAGACACTGGAGGCAACCTCGACTGCTACACCCAACGAAACTTCGCTAGCTAGAAGT-----------------
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>chr1A_241
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GGGGCGGGGTTGGAGATGCCCTTACTACTGGCAAGCGAGATGTACATATTTTGCGTCACTTATCTACACATTTGCCAGTC
TAGTTTGTTCAACGCAAATTGTCATTTGCCAGTCTAGTTTGTTCAACGCAAAATTTGGTCCGATTACTACCATGTTTTAT
CTAATGTGTTAAATTTAAAATAC----AACAGGAAATTCCTCTTGTTGACGAAACGCTGATCTCTTCCCTGCTCCAACCA
CCTATCTTTACCGAGTCCCAATCCATGTGATATTTGATGGCTTCGTGTTCGGTCTGGATTCGACCATTGGACGCCGAGCT
GGAGTTTTTCCACGAGCCGTCGACGACGTAGAAGCTTCTTCCAGTCCTCCCATTCATGCGCTGTACAAGGCTGACCAACG
CGAGGCACTGCACCCCCAAAA---AAACAGTAGCAGTACAACCACATGATGTT---------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------CAGCAGCCATGTGTATCTGTACACCGTCCC
AAGAAGTCTGCGCGTATCGCCAACGCCCTGAAAAGAACTTGTTTGTGCAGACGTGTGGAATTCACGTAGAGATATGTA--
--TACATGGGAGGCCACATGCGTCTGCAAGCACGCGGCTGCGAGAGTGATAACGATACG-CCACATGCCTCTTGTTTAAA
AAAAAAAGATACGCCACATGCCTCCATCGTCCTGACACCGCGGCCCGTCAAATTTTCGCCCCGCA---AAGACGGGCGCA
ACGTGGAAAAGTATACGCCCGCGAC-----------------------GAACCGTGCATAATCACCGCGTTATCC-----
----CCGCGCTGCACCC-GAGCAGAGCTGCTATAAGTACCGCTGCAGA-----CC---CAGCAGCTTCGTCACACAGGCC
TCTCTCCA-CTCTCCT-------TGAGCTATACTA-----CATTACACGAGCTGGTCAGCTGTAGGTG--AGCTAGTGAG
C--ATGGCGCGGTTTGCTGCGCT------------CGCCGCGCTTCTGCTCGCCGTGGCGGTGGGCGGCGCCGCGGCGCA
GGGCGTGGGCTCCGTCATCACGCAGTCCATGTACGCGAGCATGCTGCCCAACCGCGACAACTCGCTGTGCCCGGCCAGGG
GGTTCTACACGTACGACGCCTTCATCGCCGCCGCCAACACCTTCCCGGGCTTCGGCACCACCGGCAGCGCCGACGATGTC
AAGCGCGAGCTCGCCGCCTTCTTCGGCCAGACCTCACACGAGACCACCGGTATG--TCAGTT----AGT-----------
---------GTTGATTTCGATTGTTGTTTTCAAT------GGAATTCGTGGCTGCCTTGATTAACTGAA-----------
------------GTACGTGTTTGTGCATGCCGTGTCAACGTGCAGGCGGGACGAGAGGCGCCGCCGACCAGTTCCAGTGG
GGCTACTGCTTCAAGGAGGAGATAAACAAGGCCACGTCCCCACCCTACTATGGACGGGGACCCATCCAATTGACAGGGTG
AGCAAAATCGCAAATTA-TG---GCCTACTA------CTTTGAAGCATCT------------TCCACATG-----CAAAA
TGATAC-TTGGTCAACCCAAATATCACAGGCTCAAATAATCTGTAG-A--A-AAATCTGGTTGAAAAGTACAGCAGTGTT
GACATTCTAGCTAGCCGCTAATCCCGACCTGATCCAAATAAGCTTTCGTTTTCGCGTGCAAC-AATTGTTAATAACAGCA
AATACCCAGCTGGGTCTTGGTTGCTTTGCCGAAAAGATT-GTTCT-GATGAACCAGTAA---TTCCTCGTGC----GAAT
GACCAGGCAGTCCAACTACGATCTCGCCGGGAGAGCCATCGGGAAGGACCTGGTGAGCAACCCGGACCTGGTCTCTACGG
ACGCGGTGGTGTCGTTCAGGACGGCGATGTGGTTCTGGATGACGGCGCAGGGCAACAAGCCGTCAAGCCACGACGTCGCC
CTAGGCCGCTGGACGCCGACGGCCGCCGACACCGCTGCCGGTCGGGTGCCCGGATACGGCGTGATCACTAATATCATCAA
CGGCGGGCTCGAGTGTGGCATTGGCCAGAACGATGCCAACGTCGATCGCATCGGCTACTACATGCGCTACTGCAGCATAC
TCGGCACGGCCACCGGGGGCAACCTCGACTGCTACACCCAGCGAAACTTCGCTAGTTAGACAGTGTATCCACGCCTTATG
AATAAGTGTCTATACTTATGCCATTGTGGAATAAATAATTCAACATGTGATCAGTTGATTCGTATGGTAATACGACTAAG
TTGTTGCAACAAATTATGGAAATTAAATAAAATCAGATGATA---------TTGTTATGTTGTGTACACAAGATAATGTA
TAACAGGCCGACCAGAGTGATAGCTGTGTGTTTTTTTCCGGGGAAAGTATGATAGCTGTGTTGCTTGTCCAATCAGTAGT
GCCCTCATGTCGCGAACCAATTTGTGATTAGATGGTTAGAAGGACACAAGGATAGTGGTAT--CCAGCTCATCAGGGTTC
AAGTTCCATACTTGACATTTTGTGCTCGCATTATTTCTGGATTTATTTCAGTTCTCCGGCGATGTTCGTTCAGTGGGAGA
AGACATTCGGTCAACTGCGAGACGTCTATGGTGACTTTATAAAATCTCAAGACACTATACCAACTCAGTCTCTCGGAGGT
GCTTATAGGGGTAGGATGTGCGTGT-TGTGTTCATAAGGGTAAGTGTACTTTAGTGTATGTGAGCGATTTCAATTGTACT
GTGTTAAAGAAAAGCAGTACCCTTATGTCCGGCTATAGGGCAGCCTCGCCTAAAGAGAGCGTTGTTGTACTGCATCGTCA
CAATGTGCGGGTGGAGATGATTTTTTTTCTTTTTTTCAATGTTTATTGTTTTTACCTTTTCCTTTATTTTTTTACTTTTA
TTTATACTTCCAAATATTCCAAACATATTTGATATATATTACCAAAAACACTCTCACATAAAACATTTCGAAAATGTTAA
TCAAGTATTTAAAAAATATTAAATGTGTATAGAAAAATGTTGCTCGTGTATATGGAAAATGTATACAGAAAAATACATAA
TGTGTATTAAAAAAGTTGATCATGTATTCAAA------------------------------------------------
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>chr5D_838
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-------------------------------------CTGCGTGAGTGAGAACGATACG-C-------------------
---------------ACATGCGTCCATCGCCCTGTCACCGCGGCCCGTCAAATTTTCTCCCTGCAAAGAAGATGGGCGCA
AAGTAGAAAAGTATACGTGACGGCCTGGCGGGACAGACGCGTGGAGTGGAACCGTGCATCGTCACCGCGTT-TCCTCTGC
GCAGCTGCGCTGCACCC-GAGCAGAGCAGCTATAAATACCTCTGCAACAACCTCC---AAAATTCTTCATCACACAGGCA
TTTTACAAACCTCCCTGAGTTATACTATAAG----------ATTACACTAGCTGATCAGCTGAAGGAGCTGG----TTAG
C--ATGGTGCGTTCTGTCGCGCTCGCCGTGTGCGCCGCCGCGCTTCTGCTCGCCATGGCGGCCGGCGGTGCGGCGGCGCA
GGGCGTGGGCTCGGTCATCACGCGGGCGGTGTACGAGACCATGCTGCCAAACCGGGACAACTCGATCTGCCCGGCCAAGG
GGTTTTACACGTACGACGCCTTCATCGCCGCCGCCGGCACCTTCCCGGGGTTCGGCACCACCGGCAGCGCGGACGACGTG
AAGCGCGAGCTCGCCGCCTTCTTCGGCCAGACCTCCCACGAGACCACCGGTACG--TCCATCAGTCAGT-----------
---------GTGGATTGCGGTTATTTGTTTATTATAAACAGAAATTCGTGGCACTTTTGATTCGGACATGACTA--TACC
TTGATTAGTC--GTATATGTTTGTGCATGGCGTGTCAACGTGCAGGAGGGCC---------------CCAGTTTCAATGG
GGCTACTGCTTTAAGGAAGAGAAAACCATGGCCACGTCTCCACCCTACTATGGACGGGGACCGATTCAATTAACAGGGTA
AGCAAAATCACAAGTTA-TTACAGCCTATAGGGCAATACTATTTTCTAGAATATACTAGTACTCCAGATG-----CAAAA
CGATGTATTGGTCAACACGAATATCGCAGGCTAAAAATATCTGTAGAA--A-AAAACTGCTCGAAAAGTACAGCAGTGCT
GACATGCAAAC-----------------------------------------------------------AATAAGCACA
GAAACCCGGCTGTGTCTTGGTTGCTCTGCCGACAAGATT-GTTCT-GATGAACCAATGA---TTCGTCGTATGATTGATT
GAGCAGGCAGTCCAACTACGATCTCGCCGGGAAAGCGCTGAAACTGGATCTGGTAAGCAACCCGAACCTGGTGTCGACGG
ACGCCGAGGTGTCCTTCAGGACGGCCATGTGGTTCTGGATGACGGCGCAGGGCAACAAGCCGTCGTGCCACGACGTCGCC
CTCCGCCGCTGGACGCCGACGGCCGCCGATACGGCCGCTGGGCGGGTTCCCGGCTACGGCGTGATCACCAACATCATTAA
CGGCGGAAGGGAGTGTGGCAAAGGCATGAACCCGGAGAACGTTGACCGCATCGGCTACTACACGCGCTACTGCGGCATAC
TCGGCACGGCCACCGGGGACAACCTCGACTGCTACACCCAGCAGAACTTCGCTACCTAGA--------------------
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>chr1B_954
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-----------------------------------------------------GTGCATCGTCAGCGCATT-TCC-----
----GTGCGCTGCACCC-AAGCTGAGCAGCTATAAATACAGCTGCAAA-----CCA------AGCTTCATCACACAAGCG
TCCTGCAAGCTCTCCTCTTGCGCTATACCACACAGGAGTGCATTACACGAGCTGATTAGCTGAAGGTG--GG----TTGG
C--ATGGCGAGGTTTGCTGCCCTCGCCGTGTGCGCCGCCGCGCTCCTGCTCGCCGTGGCGGTGGGCGGCGCCGCGGCACA
GGGCGTGGGCTCGGTTATCACGCGGTCGGTGTACGCGAGCATGCTGCCCAACCGCGACAACCCGCAGTGCCCGGCCAGGG
GGTTCTACACGTACGATGCCTTCATCGCCGCCGCCAACACCTTCCCGGGTTTCGGCACCACCGGCAGCTCGGACGACATC
AAGCGCGAGCTCGCTGCCTTCTTCGGCCAGACCTCACACGAGACCACCGGTACG--TCAATCAGCCACT-----------
---------GTTGATTTCGATTGCTGTTTTCAAC------GGATTTCGTGGCACTTTTGATTTGGACAT----CGCTGCC
TTGGTTAATCGTGTACGTGCTTGTGCATGCCGTGTCAACGTGTAGGAGGGACGAGAGGCGCCGCCGACCAGTTCCAATGA
GGCTACTGCTTCAAGGAAGAGATAAGCAAGGCCACGTCTCCACCCTACTATGGACGGGGACCCATCCAATTGACAGGGTA
AGCAAAATCCCAAATTG-TG---GCCTATATGACAATCTCTATAGCATCT------------TCCACATG-----AAAAA
CAGTATATTGGTCAACACTGATATCACAGACTGAAATAATCTGTAG-AAAA-AAATCTGCTTGAAAAGTACTGCTGTGTT
GACATTCTAGCTAGCCGCTAATCACGACCTGATCCAAATAAGCTTTTGTTTTCGCGTGTAAT-AATTGTTAATAACAACA
AAAACCCAGTTG------GGTTGCTTTGCCGAAGAGATT-GTTCTCGATGAACAAATAA---TTCCTTGTGC----CAAT
GACCAGGCGGTCCAACTACGATCTCGCCGGGAGAGCCATCGGGAAGGACCTGGTGAGCAACCCGGACCTGGTGTCCACGG
ACGCGGTGGTGTCCTTCAGGACGGCCATGTGGTTCTGGATGACGGCGCAGGGCAACAAGCCGTCGAGCCACAACGTCGCC
CTACGCCGCTGGACGCCAACGGCCGCCGACACCGCTGCCGGTCGGGTGCCCGGGTACGGCGTAATCACCAACATCATCAA
CGGTGGGCTCGAGTGCGGCATGGGCCGGAACGACGCCAACGTCGACCGTATCGGTTACTACACGCGCTACTGCAGCATGC
TCGGCACGTCCACCGGGGGCAACCTCGACTGCTACACCCAGAGGAACTTCGGTAGCTAGAAGT-----------------
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>chr1A_955
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------------------------------------------------------TGCATCGCCAGCGCATT-TCC-----
----CTGCGCTGCACCC-GAGCCGAGCAGCTATAAATACAGCTGCAAA-----CC---AAGCAGCTTCATCACACAAGCG
TCCTGCAAGCCCTCCTCCTGCGCTACACCGCACAGGAGTGCATTACACGAGCTGATCAGCTGAAGGTG--AG----TTGG
CCTATGGCGAGGTTTGCTGCCCTCGCCGTGTGCGCCGCCGCGCTCCTGCTCGCCGTGGCGGCGGGGGGTGCCGCGGCGCA
GGGCGTGGGCTCGGTCATCACGCGGTCGGTGTACGCGAGCATGCTGCCCAACCGCGACAACTCGCTGTGCCCGGCCAGAG
GGTTCTACACGTACGACGCCTTCATCGCCGCCGCCAACACCTTCCCGGGCTTCGGCACCACCGGCAGCGCCGACGAAATC
AAGCGCGACCTCGCCGCCTTCTTCGGCCAGACCTCCCACGAGACCACCGGTACG--TCAGTCAGCCACT-----------
---------GTTGATTTCGTTTGATGTTTTCAAC------GGATTTCGTGGCACTTTTGATTTGGACATGCATCGCTGCC
TTGGTTAATCGTGTTCGTGCTTGTGCATGCCGTGTCAACGTGTAGGAGGGACGAGAGGCGCTGCCGACCAGTTCCAGTGG
GGCTACTGCTTCAAGGAAGAGATAAGCAAGGCCACGTCCCCACCATACTATGGACGGGGACCCATCCAATTGACAGGGTA
AGCAAGATCCCAAGTTTATG---GTCTATAAGACGATCTCTGAAACACCA------------TCCACATG-----AAAAA
CAGTATATTGGTCAACACTGATATCACAGACTGAAATAATCTGTAG-AAAA-AAATCTGCTTGAAAAGTACAGCTGTGTT
GACATTCTAGCTATCCGCTAATCACGACCTGATCCAAATAAGCTTTCGTTTTCGCGTGCAAT-AGTTATTGATAATAACA
AAGACACGGTTGGGCCTTGGTTGCCTTGGCGATGAGATT-GTTCT-GATGAACCAATAACTCTTCCTCGTGC----GATT
GACCAGGCGGTCCAACTACGATCTTGCCGGGAGAGCGATCGGGAAGGACCTGGTGAGCAACCCAGACCTAGTGTCCACGG
ACGCGGTGGTGTCCTTCAGGACGGCCATGTGGTTCTGGATGACGGCGCAGGGAAACAAGCCGTCGTGCCACAACGTCGCC
CTACGCCGCTGGACGCCGACGGCCGCCGACACCGCTGCCGGCAGGGTGCCCGGATACGGAGTGATCACCAATATCATCAA
CGGCGGGCTCGAGTGCGGAATGGGCCGGAACGACGCCAACGTCGACCGCATCGGCTACTACACGCGCTACTGCGGCATGC
TCGGCACGGCCACCGGAGGCAACCTCGACTGCTACACCCAGAGGAACTTCGCTAGCTAGAAGT-----------------
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>chr1D_973
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------------------------------------------------------------------------TCC-----
----CTGCGCTGCACCC-GAGTTGAGCAGCTATAAGTACAGCTGCAAA-----CC---AAGCAGCTTCATCACACAAGCG
TCCTGCAAGCTCTCCTCTTGCGCTATACCACACAGGAGAGCATTACACGAGCTGATTTGCTGAAGGTG--AG----TTGG
C--ATGGCGAGGTTTGCTGCCCTCGCCGTGTGCGCCGCTGCGCTTCTGCTCGCCGTGGCGGTGGGCGGCGCCGCGGCGCA
GGGCGTGGGCTCGGTCATCACGCGGTCGGTGTACGCGAGCATGCTGCCCAACCGCGACAACTCGCTGTGCCCGGCCCGGG
GGTTCTACACGTACGACGCCTTCATCGCCGCCGCCAACACCTTCCCGGGCTTCGGCACCACCGGCAGCGCCGACGACATC
AAGCGCGACCTCGCTGCCTTCTTCGGCCAGACCTCGCACGAGACCACCGGTACGAGTCAGTCAGCCACT-----------
---------GTTGATTTCGGTTGCTGTTTTTAAC------GGATTTCGTGGCACTTTTGATTTGGACAT----CGCTGCC
TTGGTTAATCGTGTACGTGCTTGTGCATGCCGTGCCAACGTGTAGGAGGGACGAGAGGCGCTGCCGACCAGTTCCAATGG
GGCTACTGCTTCAAGGAAGAGATAAGCAAGGCCACGTCTCCACCCTACTATGGACGGGGACCCATCCAATTGACAGGGTA
AGCAAAATCCCAAGTTTATG---GCCTATAAGACGATCTCTCAAACATCA------------TCCACATGAAAAAAAAAA
CAGTATATTGGTCAACACTGATATCACAGACTGAAATAATCTGTAG-AAAA-AAATCTGCTTGAAAAGTACAGCAGTGTT
GACATTCTAGCTAGCCGCTAATCACGACCTGGTCCAAGTAAGCTTTCGTTTTCGCGTGTAAT-AATTATAAATAACAAGA
AAAGCCCAGTTG------GGTTGCTTTGCCGAAGAGATT-GTTCT-GATGAACAAATAA---TTCATTGTGC----GATT
GACCAGGCGGTCCAACTACGATCTCGCCGGGAGAGCCATTGGGAAGGACCTGGTGAGCAACCCGGACCTAGTGTCCACGG
ACGCGGTGGTGTCCTTCAGGACGGCCATGTGGTTCTGGATGACGGCGCAGGGCAACAAGCCGTCGAGCCACAACGTCGCC
CTACGCCGCTGGACACCGACGGCCGCTGACACCGCTGCCGGCCGGGTGCCCGGATACGGAGTAATCACCAATATCATCAA
CGGCGGGCTCGAGTGCGGCATGGGCCGGAACGACGCTAACGTCGACCGCATCGGCTACTACACGCGCTACTGCAGCATGC
TCGGCACGTCGACCGGGGGCAACCTCGACTGCTACACACAGAGGAACTTCGCTAGCTAGAAGT-----------------
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>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
-----------------------------------------------S--------------S-----------------
--------------------------------------------------------------------------------
---------S----------------S---------------------S-------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
-----------S--SSS-S--SSS--S-----SS-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
S-------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------SS-----------------------------------------------------------SS
SS-----------------------------------------S------------------------------------
------------------------------S----------------------S------S-------------------
----S----------------------------------------------------S---S------------------
--------S-----------------S-----------------------------------------------------
---------------S--S--S------------------------------S---------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S------SSSSSSSSSSS
SSSSSSSSS-----------------------------------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
-------S-------------------S-S--------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----S-------------------------S---------------------------
-------------------S-------------------S-----------SS----------------S------S---
--------------------------------------------------------------------------------
----------------------S--------------------------------------S------------------
--------------------S--------------------------------------S--------------------
--------------------------------------------------------------------------------
-S--------------------------S---------------------------------------SS----S-----
--S---------------------S-----------------------------------------------S-------
------S-----------S--S--S----------S--SSS-SSSSSSSSS------------S---S------S-S---
---------------S---S---------S------S-----------S-------------S-------S-S--SS---
-S---S-S---S----S----SSS--S--S-------S-----------S----S------SS--------S--------
--S-SSS-S-----------SS----------------SS-----------S-S-S---S------S------------S
--S-S---SSSSSSS-SSSSSSSSS-SSSS-SS-S-SS--------------SS------SSSS-----------S-S-S
---S------S----S-------SSS----------S--S-S-------SS-S--------S---------S--------
S---S---S-S------------------SS--------------------S----S--------SS--SS-----S--S
---SS---S--S---SSSSSS--------SS------S--S-------------------S----S--------------
-------S-----------S------------------------------------------------SS---------S
------------------------S-----------------S--S--------S-----S------S---S---S---S
-----S--------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_209
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-----------------------------ACTGGGAACAAAGGCAACGA-------------------------------
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>reverse_1765
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----TCAGTGTTGATTTCGGGGCT--------------------------------------------------------
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>forward_1755
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-------------------------------------------------------GTCCGTCCGTCAGTCAATCA-----
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>reverse_3211
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----------ATAGGGTGTGCGTACGTGTG--------------------------------------------------
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-----
