Multiple sequence alignment - TraesCS1D01G203500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G203500 chr1D 100.000 2328 0 0 726 3053 288147213 288149540 0.000000e+00 4300.0
1 TraesCS1D01G203500 chr1D 100.000 456 0 0 1 456 288146488 288146943 0.000000e+00 843.0
2 TraesCS1D01G203500 chr1A 94.791 2342 90 17 726 3053 359689224 359691547 0.000000e+00 3620.0
3 TraesCS1D01G203500 chr1A 91.593 226 16 1 1 226 359654192 359654414 2.960000e-80 309.0
4 TraesCS1D01G203500 chr1A 92.473 93 6 1 1894 1986 525837409 525837500 6.870000e-27 132.0
5 TraesCS1D01G203500 chr1B 94.660 2341 107 8 726 3053 389734855 389737190 0.000000e+00 3615.0
6 TraesCS1D01G203500 chr1B 87.838 74 8 1 332 404 637533535 637533608 5.420000e-13 86.1
7 TraesCS1D01G203500 chr2D 85.268 224 33 0 1 224 650604844 650605067 6.580000e-57 231.0
8 TraesCS1D01G203500 chr6B 85.321 218 32 0 1 218 4819294 4819077 3.060000e-55 226.0
9 TraesCS1D01G203500 chr7B 92.473 93 6 1 1894 1986 684164031 684164122 6.870000e-27 132.0
10 TraesCS1D01G203500 chr5A 92.473 93 6 1 1894 1986 146515870 146515779 6.870000e-27 132.0
11 TraesCS1D01G203500 chr4A 92.473 93 6 1 1894 1986 196784980 196785071 6.870000e-27 132.0
12 TraesCS1D01G203500 chr2A 92.473 93 6 1 1894 1986 484993959 484993868 6.870000e-27 132.0
13 TraesCS1D01G203500 chr2A 91.398 93 7 1 1894 1986 101128038 101127947 3.200000e-25 126.0
14 TraesCS1D01G203500 chr5D 92.208 77 5 1 330 405 156629453 156629377 1.160000e-19 108.0
15 TraesCS1D01G203500 chr4D 88.158 76 7 2 332 405 416135204 416135129 4.190000e-14 89.8
16 TraesCS1D01G203500 chr4D 100.000 28 0 0 246 273 455756140 455756113 6.000000e-03 52.8
17 TraesCS1D01G203500 chr7D 86.154 65 7 2 343 405 577599119 577599055 5.460000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G203500 chr1D 288146488 288149540 3052 False 2571.5 4300 100.000 1 3053 2 chr1D.!!$F1 3052
1 TraesCS1D01G203500 chr1A 359689224 359691547 2323 False 3620.0 3620 94.791 726 3053 1 chr1A.!!$F2 2327
2 TraesCS1D01G203500 chr1B 389734855 389737190 2335 False 3615.0 3615 94.660 726 3053 1 chr1B.!!$F1 2327

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 438 0.038343 CCAACAATCCGCCAAACCAG 60.038 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2258 2285 0.605589 TGGCAAGGGCAAAATTACCG 59.394 50.0 0.0 0.0 43.71 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.519540 CCCATCATTTTGAAAACCGACT 57.480 40.909 0.00 0.00 0.00 4.18
22 23 4.236935 CCCATCATTTTGAAAACCGACTG 58.763 43.478 0.00 0.00 0.00 3.51
23 24 4.261994 CCCATCATTTTGAAAACCGACTGT 60.262 41.667 0.00 0.00 0.00 3.55
24 25 5.288804 CCATCATTTTGAAAACCGACTGTT 58.711 37.500 0.00 0.00 39.43 3.16
25 26 5.402270 CCATCATTTTGAAAACCGACTGTTC 59.598 40.000 0.00 0.00 35.67 3.18
26 27 5.828299 TCATTTTGAAAACCGACTGTTCT 57.172 34.783 0.00 0.00 35.67 3.01
27 28 6.202516 TCATTTTGAAAACCGACTGTTCTT 57.797 33.333 0.00 0.00 35.67 2.52
28 29 6.626302 TCATTTTGAAAACCGACTGTTCTTT 58.374 32.000 0.00 0.00 35.67 2.52
29 30 7.093992 TCATTTTGAAAACCGACTGTTCTTTT 58.906 30.769 0.00 0.00 35.67 2.27
30 31 7.600752 TCATTTTGAAAACCGACTGTTCTTTTT 59.399 29.630 0.00 0.00 35.67 1.94
48 49 4.543590 TTTTTGGCTTCTGTGTTTGGAA 57.456 36.364 0.00 0.00 0.00 3.53
49 50 4.543590 TTTTGGCTTCTGTGTTTGGAAA 57.456 36.364 0.00 0.00 0.00 3.13
50 51 4.543590 TTTGGCTTCTGTGTTTGGAAAA 57.456 36.364 0.00 0.00 0.00 2.29
51 52 4.543590 TTGGCTTCTGTGTTTGGAAAAA 57.456 36.364 0.00 0.00 0.00 1.94
69 70 4.701956 AAAAAGTGTGTTGACAGGTCAG 57.298 40.909 2.01 0.00 41.13 3.51
70 71 1.668419 AAGTGTGTTGACAGGTCAGC 58.332 50.000 9.04 9.04 41.13 4.26
71 72 0.833287 AGTGTGTTGACAGGTCAGCT 59.167 50.000 15.63 3.32 40.76 4.24
72 73 1.202580 AGTGTGTTGACAGGTCAGCTC 60.203 52.381 15.63 12.83 40.76 4.09
73 74 1.123077 TGTGTTGACAGGTCAGCTCT 58.877 50.000 15.63 0.00 40.76 4.09
74 75 1.202568 TGTGTTGACAGGTCAGCTCTG 60.203 52.381 15.63 0.00 40.76 3.35
75 76 0.394192 TGTTGACAGGTCAGCTCTGG 59.606 55.000 15.63 0.00 40.76 3.86
76 77 0.394565 GTTGACAGGTCAGCTCTGGT 59.605 55.000 8.75 0.00 41.13 4.00
77 78 0.394192 TTGACAGGTCAGCTCTGGTG 59.606 55.000 5.94 0.00 41.13 4.17
78 79 1.294780 GACAGGTCAGCTCTGGTGG 59.705 63.158 5.94 0.00 36.62 4.61
79 80 1.152247 ACAGGTCAGCTCTGGTGGA 60.152 57.895 5.94 0.00 36.62 4.02
80 81 0.546267 ACAGGTCAGCTCTGGTGGAT 60.546 55.000 5.94 0.00 36.62 3.41
81 82 0.177604 CAGGTCAGCTCTGGTGGATC 59.822 60.000 0.00 0.00 0.00 3.36
82 83 0.042431 AGGTCAGCTCTGGTGGATCT 59.958 55.000 0.00 0.00 0.00 2.75
83 84 1.289231 AGGTCAGCTCTGGTGGATCTA 59.711 52.381 0.00 0.00 0.00 1.98
84 85 2.111384 GGTCAGCTCTGGTGGATCTAA 58.889 52.381 0.00 0.00 0.00 2.10
85 86 2.501723 GGTCAGCTCTGGTGGATCTAAA 59.498 50.000 0.00 0.00 0.00 1.85
86 87 3.431486 GGTCAGCTCTGGTGGATCTAAAG 60.431 52.174 0.00 0.00 0.00 1.85
87 88 3.449018 GTCAGCTCTGGTGGATCTAAAGA 59.551 47.826 0.00 0.00 0.00 2.52
88 89 4.081420 GTCAGCTCTGGTGGATCTAAAGAA 60.081 45.833 0.00 0.00 0.00 2.52
89 90 4.161189 TCAGCTCTGGTGGATCTAAAGAAG 59.839 45.833 0.00 0.00 0.00 2.85
90 91 3.454082 AGCTCTGGTGGATCTAAAGAAGG 59.546 47.826 0.00 0.00 0.00 3.46
91 92 3.452627 GCTCTGGTGGATCTAAAGAAGGA 59.547 47.826 0.00 0.00 0.00 3.36
92 93 4.442753 GCTCTGGTGGATCTAAAGAAGGAG 60.443 50.000 0.00 0.00 0.00 3.69
93 94 4.033709 TCTGGTGGATCTAAAGAAGGAGG 58.966 47.826 0.00 0.00 0.00 4.30
94 95 2.505819 TGGTGGATCTAAAGAAGGAGGC 59.494 50.000 0.00 0.00 0.00 4.70
95 96 2.483889 GGTGGATCTAAAGAAGGAGGCG 60.484 54.545 0.00 0.00 0.00 5.52
96 97 2.168728 GTGGATCTAAAGAAGGAGGCGT 59.831 50.000 0.00 0.00 0.00 5.68
97 98 2.838202 TGGATCTAAAGAAGGAGGCGTT 59.162 45.455 0.00 0.00 0.00 4.84
98 99 3.198872 GGATCTAAAGAAGGAGGCGTTG 58.801 50.000 0.00 0.00 0.00 4.10
99 100 3.118738 GGATCTAAAGAAGGAGGCGTTGA 60.119 47.826 0.00 0.00 0.00 3.18
100 101 4.504858 GATCTAAAGAAGGAGGCGTTGAA 58.495 43.478 0.00 0.00 0.00 2.69
101 102 4.553330 TCTAAAGAAGGAGGCGTTGAAT 57.447 40.909 0.00 0.00 0.00 2.57
102 103 4.253685 TCTAAAGAAGGAGGCGTTGAATG 58.746 43.478 0.00 0.00 0.00 2.67
103 104 2.568623 AAGAAGGAGGCGTTGAATGT 57.431 45.000 0.00 0.00 0.00 2.71
104 105 2.100605 AGAAGGAGGCGTTGAATGTC 57.899 50.000 0.00 0.00 0.00 3.06
105 106 1.625818 AGAAGGAGGCGTTGAATGTCT 59.374 47.619 0.00 0.00 0.00 3.41
106 107 2.003301 GAAGGAGGCGTTGAATGTCTC 58.997 52.381 10.43 10.43 35.19 3.36
107 108 1.270907 AGGAGGCGTTGAATGTCTCT 58.729 50.000 17.48 2.63 36.18 3.10
108 109 2.457598 AGGAGGCGTTGAATGTCTCTA 58.542 47.619 17.48 0.00 36.18 2.43
109 110 2.832129 AGGAGGCGTTGAATGTCTCTAA 59.168 45.455 17.48 0.00 36.18 2.10
110 111 3.118956 AGGAGGCGTTGAATGTCTCTAAG 60.119 47.826 17.48 0.00 36.18 2.18
111 112 3.368531 GGAGGCGTTGAATGTCTCTAAGT 60.369 47.826 17.48 0.00 36.18 2.24
112 113 4.246458 GAGGCGTTGAATGTCTCTAAGTT 58.754 43.478 11.54 0.00 33.24 2.66
113 114 3.997021 AGGCGTTGAATGTCTCTAAGTTG 59.003 43.478 0.00 0.00 0.00 3.16
114 115 3.994392 GGCGTTGAATGTCTCTAAGTTGA 59.006 43.478 0.00 0.00 0.00 3.18
115 116 4.631813 GGCGTTGAATGTCTCTAAGTTGAT 59.368 41.667 0.00 0.00 0.00 2.57
116 117 5.446473 GGCGTTGAATGTCTCTAAGTTGATG 60.446 44.000 0.00 0.00 0.00 3.07
117 118 5.446473 GCGTTGAATGTCTCTAAGTTGATGG 60.446 44.000 0.00 0.00 0.00 3.51
118 119 5.639506 CGTTGAATGTCTCTAAGTTGATGGT 59.360 40.000 0.00 0.00 0.00 3.55
119 120 6.401474 CGTTGAATGTCTCTAAGTTGATGGTG 60.401 42.308 0.00 0.00 0.00 4.17
120 121 5.491070 TGAATGTCTCTAAGTTGATGGTGG 58.509 41.667 0.00 0.00 0.00 4.61
121 122 3.981071 TGTCTCTAAGTTGATGGTGGG 57.019 47.619 0.00 0.00 0.00 4.61
122 123 3.248024 TGTCTCTAAGTTGATGGTGGGT 58.752 45.455 0.00 0.00 0.00 4.51
123 124 4.422057 TGTCTCTAAGTTGATGGTGGGTA 58.578 43.478 0.00 0.00 0.00 3.69
124 125 5.030147 TGTCTCTAAGTTGATGGTGGGTAT 58.970 41.667 0.00 0.00 0.00 2.73
125 126 6.199376 TGTCTCTAAGTTGATGGTGGGTATA 58.801 40.000 0.00 0.00 0.00 1.47
126 127 6.670464 TGTCTCTAAGTTGATGGTGGGTATAA 59.330 38.462 0.00 0.00 0.00 0.98
127 128 7.181305 TGTCTCTAAGTTGATGGTGGGTATAAA 59.819 37.037 0.00 0.00 0.00 1.40
128 129 7.711339 GTCTCTAAGTTGATGGTGGGTATAAAG 59.289 40.741 0.00 0.00 0.00 1.85
129 130 7.622081 TCTCTAAGTTGATGGTGGGTATAAAGA 59.378 37.037 0.00 0.00 0.00 2.52
130 131 8.331931 TCTAAGTTGATGGTGGGTATAAAGAT 57.668 34.615 0.00 0.00 0.00 2.40
131 132 9.442062 TCTAAGTTGATGGTGGGTATAAAGATA 57.558 33.333 0.00 0.00 0.00 1.98
132 133 9.712305 CTAAGTTGATGGTGGGTATAAAGATAG 57.288 37.037 0.00 0.00 0.00 2.08
133 134 7.691993 AGTTGATGGTGGGTATAAAGATAGT 57.308 36.000 0.00 0.00 0.00 2.12
134 135 7.736893 AGTTGATGGTGGGTATAAAGATAGTC 58.263 38.462 0.00 0.00 0.00 2.59
135 136 7.347222 AGTTGATGGTGGGTATAAAGATAGTCA 59.653 37.037 0.00 0.00 0.00 3.41
136 137 7.684317 TGATGGTGGGTATAAAGATAGTCAA 57.316 36.000 0.00 0.00 0.00 3.18
137 138 7.735917 TGATGGTGGGTATAAAGATAGTCAAG 58.264 38.462 0.00 0.00 0.00 3.02
138 139 7.567250 TGATGGTGGGTATAAAGATAGTCAAGA 59.433 37.037 0.00 0.00 0.00 3.02
139 140 7.931015 TGGTGGGTATAAAGATAGTCAAGAT 57.069 36.000 0.00 0.00 0.00 2.40
140 141 8.331931 TGGTGGGTATAAAGATAGTCAAGATT 57.668 34.615 0.00 0.00 0.00 2.40
141 142 9.442062 TGGTGGGTATAAAGATAGTCAAGATTA 57.558 33.333 0.00 0.00 0.00 1.75
151 152 7.489239 AGATAGTCAAGATTAATAGGAGGGC 57.511 40.000 0.00 0.00 0.00 5.19
152 153 7.252678 AGATAGTCAAGATTAATAGGAGGGCT 58.747 38.462 0.00 0.00 0.00 5.19
153 154 8.402683 AGATAGTCAAGATTAATAGGAGGGCTA 58.597 37.037 0.00 0.00 0.00 3.93
154 155 8.974292 ATAGTCAAGATTAATAGGAGGGCTAA 57.026 34.615 0.00 0.00 0.00 3.09
155 156 7.880265 AGTCAAGATTAATAGGAGGGCTAAT 57.120 36.000 0.00 0.00 0.00 1.73
156 157 8.974292 AGTCAAGATTAATAGGAGGGCTAATA 57.026 34.615 0.00 0.00 0.00 0.98
157 158 9.567702 AGTCAAGATTAATAGGAGGGCTAATAT 57.432 33.333 0.00 0.00 0.00 1.28
158 159 9.606631 GTCAAGATTAATAGGAGGGCTAATATG 57.393 37.037 0.00 0.00 0.00 1.78
159 160 9.560860 TCAAGATTAATAGGAGGGCTAATATGA 57.439 33.333 0.00 0.00 0.00 2.15
162 163 9.735362 AGATTAATAGGAGGGCTAATATGATGA 57.265 33.333 0.00 0.00 0.00 2.92
163 164 9.771534 GATTAATAGGAGGGCTAATATGATGAC 57.228 37.037 0.00 0.00 0.00 3.06
164 165 8.917414 TTAATAGGAGGGCTAATATGATGACT 57.083 34.615 0.00 0.00 0.00 3.41
165 166 7.430760 AATAGGAGGGCTAATATGATGACTC 57.569 40.000 0.00 0.00 0.00 3.36
166 167 4.756564 AGGAGGGCTAATATGATGACTCA 58.243 43.478 0.00 0.00 35.41 3.41
167 168 4.530161 AGGAGGGCTAATATGATGACTCAC 59.470 45.833 0.00 0.00 33.22 3.51
168 169 4.489810 GAGGGCTAATATGATGACTCACG 58.510 47.826 0.00 0.00 33.22 4.35
169 170 4.152647 AGGGCTAATATGATGACTCACGA 58.847 43.478 0.00 0.00 33.22 4.35
170 171 4.219507 AGGGCTAATATGATGACTCACGAG 59.780 45.833 0.00 0.00 33.22 4.18
171 172 4.218635 GGGCTAATATGATGACTCACGAGA 59.781 45.833 0.00 0.00 33.22 4.04
172 173 5.105554 GGGCTAATATGATGACTCACGAGAT 60.106 44.000 0.00 0.00 33.22 2.75
173 174 6.393990 GGCTAATATGATGACTCACGAGATT 58.606 40.000 0.00 0.00 33.22 2.40
174 175 6.309980 GGCTAATATGATGACTCACGAGATTG 59.690 42.308 0.00 0.00 33.22 2.67
175 176 6.183360 GCTAATATGATGACTCACGAGATTGC 60.183 42.308 0.00 0.00 33.22 3.56
176 177 3.531934 ATGATGACTCACGAGATTGCA 57.468 42.857 0.00 0.00 33.22 4.08
177 178 3.317603 TGATGACTCACGAGATTGCAA 57.682 42.857 0.00 0.00 0.00 4.08
178 179 3.663025 TGATGACTCACGAGATTGCAAA 58.337 40.909 1.71 0.00 0.00 3.68
179 180 4.256110 TGATGACTCACGAGATTGCAAAT 58.744 39.130 1.71 0.00 0.00 2.32
180 181 4.696877 TGATGACTCACGAGATTGCAAATT 59.303 37.500 1.71 0.00 0.00 1.82
181 182 5.181811 TGATGACTCACGAGATTGCAAATTT 59.818 36.000 1.71 0.00 0.00 1.82
182 183 5.437289 TGACTCACGAGATTGCAAATTTT 57.563 34.783 1.71 0.00 0.00 1.82
183 184 6.552859 TGACTCACGAGATTGCAAATTTTA 57.447 33.333 1.71 0.00 0.00 1.52
184 185 6.602179 TGACTCACGAGATTGCAAATTTTAG 58.398 36.000 1.71 0.00 0.00 1.85
185 186 6.204688 TGACTCACGAGATTGCAAATTTTAGT 59.795 34.615 1.71 1.54 0.00 2.24
186 187 6.970484 ACTCACGAGATTGCAAATTTTAGTT 58.030 32.000 1.71 0.00 0.00 2.24
187 188 7.425606 ACTCACGAGATTGCAAATTTTAGTTT 58.574 30.769 1.71 0.00 0.00 2.66
188 189 7.920682 ACTCACGAGATTGCAAATTTTAGTTTT 59.079 29.630 1.71 0.00 0.00 2.43
189 190 8.060020 TCACGAGATTGCAAATTTTAGTTTTG 57.940 30.769 1.71 0.00 37.18 2.44
190 191 7.918033 TCACGAGATTGCAAATTTTAGTTTTGA 59.082 29.630 1.71 0.00 36.40 2.69
191 192 8.702438 CACGAGATTGCAAATTTTAGTTTTGAT 58.298 29.630 1.71 0.00 36.40 2.57
192 193 9.906660 ACGAGATTGCAAATTTTAGTTTTGATA 57.093 25.926 1.71 0.00 36.40 2.15
200 201 9.569167 GCAAATTTTAGTTTTGATAGTAGGTCC 57.431 33.333 0.61 0.00 36.40 4.46
201 202 9.769093 CAAATTTTAGTTTTGATAGTAGGTCCG 57.231 33.333 0.00 0.00 36.40 4.79
202 203 9.729281 AAATTTTAGTTTTGATAGTAGGTCCGA 57.271 29.630 0.00 0.00 0.00 4.55
203 204 9.901172 AATTTTAGTTTTGATAGTAGGTCCGAT 57.099 29.630 0.00 0.00 0.00 4.18
204 205 8.712285 TTTTAGTTTTGATAGTAGGTCCGATG 57.288 34.615 0.00 0.00 0.00 3.84
205 206 5.277857 AGTTTTGATAGTAGGTCCGATGG 57.722 43.478 0.00 0.00 0.00 3.51
206 207 4.715297 AGTTTTGATAGTAGGTCCGATGGT 59.285 41.667 0.00 0.00 0.00 3.55
207 208 5.895534 AGTTTTGATAGTAGGTCCGATGGTA 59.104 40.000 0.00 0.00 0.00 3.25
208 209 6.553852 AGTTTTGATAGTAGGTCCGATGGTAT 59.446 38.462 0.00 0.00 0.00 2.73
209 210 6.989155 TTTGATAGTAGGTCCGATGGTATT 57.011 37.500 0.00 0.00 0.00 1.89
210 211 6.585695 TTGATAGTAGGTCCGATGGTATTC 57.414 41.667 0.00 0.00 0.00 1.75
211 212 5.888901 TGATAGTAGGTCCGATGGTATTCT 58.111 41.667 0.00 0.00 0.00 2.40
212 213 6.312529 TGATAGTAGGTCCGATGGTATTCTT 58.687 40.000 0.00 0.00 0.00 2.52
213 214 6.781014 TGATAGTAGGTCCGATGGTATTCTTT 59.219 38.462 0.00 0.00 0.00 2.52
214 215 5.952347 AGTAGGTCCGATGGTATTCTTTT 57.048 39.130 0.00 0.00 0.00 2.27
215 216 6.309389 AGTAGGTCCGATGGTATTCTTTTT 57.691 37.500 0.00 0.00 0.00 1.94
216 217 7.427989 AGTAGGTCCGATGGTATTCTTTTTA 57.572 36.000 0.00 0.00 0.00 1.52
217 218 7.854337 AGTAGGTCCGATGGTATTCTTTTTAA 58.146 34.615 0.00 0.00 0.00 1.52
218 219 6.997239 AGGTCCGATGGTATTCTTTTTAAC 57.003 37.500 0.00 0.00 0.00 2.01
219 220 6.478129 AGGTCCGATGGTATTCTTTTTAACA 58.522 36.000 0.00 0.00 0.00 2.41
220 221 6.373495 AGGTCCGATGGTATTCTTTTTAACAC 59.627 38.462 0.00 0.00 0.00 3.32
221 222 6.373495 GGTCCGATGGTATTCTTTTTAACACT 59.627 38.462 0.00 0.00 0.00 3.55
222 223 7.241376 GTCCGATGGTATTCTTTTTAACACTG 58.759 38.462 0.00 0.00 0.00 3.66
223 224 6.938030 TCCGATGGTATTCTTTTTAACACTGT 59.062 34.615 0.00 0.00 0.00 3.55
224 225 8.095792 TCCGATGGTATTCTTTTTAACACTGTA 58.904 33.333 0.00 0.00 0.00 2.74
225 226 8.173130 CCGATGGTATTCTTTTTAACACTGTAC 58.827 37.037 0.00 0.00 0.00 2.90
226 227 8.932791 CGATGGTATTCTTTTTAACACTGTACT 58.067 33.333 0.00 0.00 0.00 2.73
229 230 8.842280 TGGTATTCTTTTTAACACTGTACTTGG 58.158 33.333 0.00 0.00 0.00 3.61
230 231 7.806487 GGTATTCTTTTTAACACTGTACTTGGC 59.194 37.037 0.00 0.00 0.00 4.52
231 232 7.582667 ATTCTTTTTAACACTGTACTTGGCT 57.417 32.000 0.00 0.00 0.00 4.75
232 233 8.685838 ATTCTTTTTAACACTGTACTTGGCTA 57.314 30.769 0.00 0.00 0.00 3.93
233 234 8.508883 TTCTTTTTAACACTGTACTTGGCTAA 57.491 30.769 0.00 0.00 0.00 3.09
234 235 8.685838 TCTTTTTAACACTGTACTTGGCTAAT 57.314 30.769 0.00 0.00 0.00 1.73
235 236 9.127277 TCTTTTTAACACTGTACTTGGCTAATT 57.873 29.630 0.00 0.00 0.00 1.40
236 237 9.744468 CTTTTTAACACTGTACTTGGCTAATTT 57.256 29.630 0.00 0.00 0.00 1.82
238 239 9.522804 TTTTAACACTGTACTTGGCTAATTTTG 57.477 29.630 0.00 0.00 0.00 2.44
239 240 6.709018 AACACTGTACTTGGCTAATTTTGT 57.291 33.333 0.00 0.00 0.00 2.83
240 241 7.811117 AACACTGTACTTGGCTAATTTTGTA 57.189 32.000 0.00 0.00 0.00 2.41
241 242 7.811117 ACACTGTACTTGGCTAATTTTGTAA 57.189 32.000 0.00 0.00 0.00 2.41
242 243 8.404107 ACACTGTACTTGGCTAATTTTGTAAT 57.596 30.769 0.00 0.00 0.00 1.89
243 244 9.509956 ACACTGTACTTGGCTAATTTTGTAATA 57.490 29.630 0.00 0.00 0.00 0.98
244 245 9.769093 CACTGTACTTGGCTAATTTTGTAATAC 57.231 33.333 0.00 0.00 0.00 1.89
245 246 8.662141 ACTGTACTTGGCTAATTTTGTAATACG 58.338 33.333 0.00 0.00 0.00 3.06
246 247 8.774890 TGTACTTGGCTAATTTTGTAATACGA 57.225 30.769 0.00 0.00 0.00 3.43
247 248 9.217278 TGTACTTGGCTAATTTTGTAATACGAA 57.783 29.630 0.00 0.00 0.00 3.85
250 251 9.968870 ACTTGGCTAATTTTGTAATACGAAAAA 57.031 25.926 9.61 1.21 35.32 1.94
252 253 8.973835 TGGCTAATTTTGTAATACGAAAAAGG 57.026 30.769 9.61 4.69 35.32 3.11
253 254 8.030106 TGGCTAATTTTGTAATACGAAAAAGGG 58.970 33.333 9.61 3.26 35.32 3.95
254 255 8.030692 GGCTAATTTTGTAATACGAAAAAGGGT 58.969 33.333 9.61 0.00 35.32 4.34
255 256 9.414295 GCTAATTTTGTAATACGAAAAAGGGTT 57.586 29.630 9.61 2.90 35.32 4.11
259 260 8.645730 TTTTGTAATACGAAAAAGGGTTTTCC 57.354 30.769 3.46 0.00 46.69 3.13
260 261 7.710044 TTTTGTAATACGAAAAAGGGTTTTCCC 59.290 33.333 3.46 0.00 46.69 3.97
291 292 9.815306 TTTATATATTATAAAGCAACAGCCCCA 57.185 29.630 0.00 0.00 0.00 4.96
292 293 9.815306 TTATATATTATAAAGCAACAGCCCCAA 57.185 29.630 0.00 0.00 0.00 4.12
293 294 6.655078 ATATTATAAAGCAACAGCCCCAAG 57.345 37.500 0.00 0.00 0.00 3.61
294 295 0.897621 ATAAAGCAACAGCCCCAAGC 59.102 50.000 0.00 0.00 44.25 4.01
303 304 3.790223 GCCCCAAGCATCCAACAA 58.210 55.556 0.00 0.00 42.97 2.83
304 305 1.293179 GCCCCAAGCATCCAACAAC 59.707 57.895 0.00 0.00 42.97 3.32
305 306 1.470996 GCCCCAAGCATCCAACAACA 61.471 55.000 0.00 0.00 42.97 3.33
306 307 0.318120 CCCCAAGCATCCAACAACAC 59.682 55.000 0.00 0.00 0.00 3.32
307 308 0.039256 CCCAAGCATCCAACAACACG 60.039 55.000 0.00 0.00 0.00 4.49
308 309 0.039256 CCAAGCATCCAACAACACGG 60.039 55.000 0.00 0.00 0.00 4.94
309 310 0.667993 CAAGCATCCAACAACACGGT 59.332 50.000 0.00 0.00 0.00 4.83
310 311 1.066908 CAAGCATCCAACAACACGGTT 59.933 47.619 0.00 0.00 0.00 4.44
311 312 1.398692 AGCATCCAACAACACGGTTT 58.601 45.000 0.00 0.00 0.00 3.27
312 313 2.577700 AGCATCCAACAACACGGTTTA 58.422 42.857 0.00 0.00 0.00 2.01
313 314 2.952978 AGCATCCAACAACACGGTTTAA 59.047 40.909 0.00 0.00 0.00 1.52
314 315 3.381908 AGCATCCAACAACACGGTTTAAA 59.618 39.130 0.00 0.00 0.00 1.52
315 316 3.733727 GCATCCAACAACACGGTTTAAAG 59.266 43.478 0.00 0.00 0.00 1.85
316 317 4.735283 GCATCCAACAACACGGTTTAAAGT 60.735 41.667 0.00 0.00 0.00 2.66
317 318 5.505985 GCATCCAACAACACGGTTTAAAGTA 60.506 40.000 0.00 0.00 0.00 2.24
318 319 5.482686 TCCAACAACACGGTTTAAAGTAC 57.517 39.130 0.00 0.00 0.00 2.73
319 320 4.940046 TCCAACAACACGGTTTAAAGTACA 59.060 37.500 0.00 0.00 0.00 2.90
320 321 5.064962 TCCAACAACACGGTTTAAAGTACAG 59.935 40.000 0.00 0.00 0.00 2.74
321 322 5.267776 CAACAACACGGTTTAAAGTACAGG 58.732 41.667 0.00 0.00 0.00 4.00
322 323 4.516323 ACAACACGGTTTAAAGTACAGGT 58.484 39.130 0.00 0.00 0.00 4.00
323 324 5.669477 ACAACACGGTTTAAAGTACAGGTA 58.331 37.500 0.00 0.00 0.00 3.08
324 325 6.290605 ACAACACGGTTTAAAGTACAGGTAT 58.709 36.000 0.00 0.00 0.00 2.73
325 326 6.424812 ACAACACGGTTTAAAGTACAGGTATC 59.575 38.462 0.00 0.00 0.00 2.24
326 327 6.100404 ACACGGTTTAAAGTACAGGTATCA 57.900 37.500 0.00 0.00 0.00 2.15
327 328 6.523840 ACACGGTTTAAAGTACAGGTATCAA 58.476 36.000 0.00 0.00 0.00 2.57
328 329 6.647895 ACACGGTTTAAAGTACAGGTATCAAG 59.352 38.462 0.00 0.00 0.00 3.02
329 330 6.647895 CACGGTTTAAAGTACAGGTATCAAGT 59.352 38.462 0.00 0.00 0.00 3.16
330 331 7.814107 CACGGTTTAAAGTACAGGTATCAAGTA 59.186 37.037 0.00 0.00 0.00 2.24
331 332 7.814587 ACGGTTTAAAGTACAGGTATCAAGTAC 59.185 37.037 0.00 0.00 38.65 2.73
332 333 7.008628 CGGTTTAAAGTACAGGTATCAAGTACG 59.991 40.741 0.00 0.00 42.12 3.67
333 334 7.814587 GGTTTAAAGTACAGGTATCAAGTACGT 59.185 37.037 0.00 0.00 42.12 3.57
337 338 2.961526 CAGGTATCAAGTACGTGGCT 57.038 50.000 8.98 0.00 42.59 4.75
339 340 4.380841 CAGGTATCAAGTACGTGGCTAA 57.619 45.455 8.98 0.00 42.59 3.09
340 341 4.945246 CAGGTATCAAGTACGTGGCTAAT 58.055 43.478 8.98 0.00 42.59 1.73
341 342 5.357257 CAGGTATCAAGTACGTGGCTAATT 58.643 41.667 8.98 0.00 42.59 1.40
342 343 5.815740 CAGGTATCAAGTACGTGGCTAATTT 59.184 40.000 8.98 0.00 42.59 1.82
343 344 6.315393 CAGGTATCAAGTACGTGGCTAATTTT 59.685 38.462 8.98 0.00 42.59 1.82
344 345 6.315393 AGGTATCAAGTACGTGGCTAATTTTG 59.685 38.462 8.98 0.00 33.94 2.44
345 346 6.093082 GGTATCAAGTACGTGGCTAATTTTGT 59.907 38.462 8.98 0.00 33.94 2.83
346 347 7.278424 GGTATCAAGTACGTGGCTAATTTTGTA 59.722 37.037 8.98 0.00 33.94 2.41
347 348 7.675962 ATCAAGTACGTGGCTAATTTTGTAA 57.324 32.000 8.98 0.00 0.00 2.41
348 349 7.675962 TCAAGTACGTGGCTAATTTTGTAAT 57.324 32.000 8.98 0.00 0.00 1.89
349 350 7.523219 TCAAGTACGTGGCTAATTTTGTAATG 58.477 34.615 8.98 0.00 0.00 1.90
350 351 7.388224 TCAAGTACGTGGCTAATTTTGTAATGA 59.612 33.333 8.98 0.00 0.00 2.57
351 352 7.675962 AGTACGTGGCTAATTTTGTAATGAA 57.324 32.000 0.00 0.00 0.00 2.57
352 353 7.524065 AGTACGTGGCTAATTTTGTAATGAAC 58.476 34.615 0.00 0.00 0.00 3.18
353 354 5.387279 ACGTGGCTAATTTTGTAATGAACG 58.613 37.500 0.00 0.00 0.00 3.95
354 355 5.179742 ACGTGGCTAATTTTGTAATGAACGA 59.820 36.000 0.00 0.00 0.00 3.85
355 356 6.128117 ACGTGGCTAATTTTGTAATGAACGAT 60.128 34.615 0.00 0.00 0.00 3.73
356 357 6.745450 CGTGGCTAATTTTGTAATGAACGATT 59.255 34.615 0.00 0.00 0.00 3.34
357 358 7.253288 CGTGGCTAATTTTGTAATGAACGATTG 60.253 37.037 0.00 0.00 0.00 2.67
358 359 7.540745 GTGGCTAATTTTGTAATGAACGATTGT 59.459 33.333 0.00 0.00 0.00 2.71
359 360 8.731605 TGGCTAATTTTGTAATGAACGATTGTA 58.268 29.630 0.00 0.00 0.00 2.41
360 361 9.730420 GGCTAATTTTGTAATGAACGATTGTAT 57.270 29.630 0.00 0.00 0.00 2.29
401 402 9.877178 AATTAATATATGGTGCGGTTTTCAAAA 57.123 25.926 0.00 0.00 0.00 2.44
402 403 9.877178 ATTAATATATGGTGCGGTTTTCAAAAA 57.123 25.926 0.00 0.00 0.00 1.94
429 430 8.474006 ACTTTTATAAAAATCCAACAATCCGC 57.526 30.769 11.62 0.00 0.00 5.54
430 431 7.547722 ACTTTTATAAAAATCCAACAATCCGCC 59.452 33.333 11.62 0.00 0.00 6.13
431 432 6.531503 TTATAAAAATCCAACAATCCGCCA 57.468 33.333 0.00 0.00 0.00 5.69
432 433 3.760580 AAAAATCCAACAATCCGCCAA 57.239 38.095 0.00 0.00 0.00 4.52
433 434 3.760580 AAAATCCAACAATCCGCCAAA 57.239 38.095 0.00 0.00 0.00 3.28
434 435 2.741759 AATCCAACAATCCGCCAAAC 57.258 45.000 0.00 0.00 0.00 2.93
435 436 0.894835 ATCCAACAATCCGCCAAACC 59.105 50.000 0.00 0.00 0.00 3.27
436 437 0.468214 TCCAACAATCCGCCAAACCA 60.468 50.000 0.00 0.00 0.00 3.67
437 438 0.038343 CCAACAATCCGCCAAACCAG 60.038 55.000 0.00 0.00 0.00 4.00
438 439 0.667184 CAACAATCCGCCAAACCAGC 60.667 55.000 0.00 0.00 0.00 4.85
439 440 0.827507 AACAATCCGCCAAACCAGCT 60.828 50.000 0.00 0.00 0.00 4.24
440 441 0.827507 ACAATCCGCCAAACCAGCTT 60.828 50.000 0.00 0.00 0.00 3.74
441 442 1.173043 CAATCCGCCAAACCAGCTTA 58.827 50.000 0.00 0.00 0.00 3.09
442 443 1.543802 CAATCCGCCAAACCAGCTTAA 59.456 47.619 0.00 0.00 0.00 1.85
443 444 1.463674 ATCCGCCAAACCAGCTTAAG 58.536 50.000 0.00 0.00 0.00 1.85
444 445 0.608035 TCCGCCAAACCAGCTTAAGG 60.608 55.000 4.29 0.00 0.00 2.69
445 446 0.608035 CCGCCAAACCAGCTTAAGGA 60.608 55.000 4.29 0.00 0.00 3.36
446 447 1.243902 CGCCAAACCAGCTTAAGGAA 58.756 50.000 4.29 0.00 0.00 3.36
447 448 1.611491 CGCCAAACCAGCTTAAGGAAA 59.389 47.619 4.29 0.00 0.00 3.13
448 449 2.035321 CGCCAAACCAGCTTAAGGAAAA 59.965 45.455 4.29 0.00 0.00 2.29
449 450 3.491792 CGCCAAACCAGCTTAAGGAAAAA 60.492 43.478 4.29 0.00 0.00 1.94
752 753 0.899720 AGAAACTCCCGATACCGCAA 59.100 50.000 0.00 0.00 0.00 4.85
833 834 4.856801 ATCGTGTGGCGCCCATCC 62.857 66.667 26.77 9.88 41.07 3.51
863 864 0.523335 CACTTTATCTTTGCGCGCCC 60.523 55.000 30.77 1.83 0.00 6.13
864 865 0.958382 ACTTTATCTTTGCGCGCCCA 60.958 50.000 30.77 13.07 0.00 5.36
935 936 0.938168 GCCGTTATTAGCCTCGGACG 60.938 60.000 6.63 0.00 44.86 4.79
964 965 1.978455 AACGAGCAAGTGGTGGTGGA 61.978 55.000 0.00 0.00 38.34 4.02
1169 1170 0.681733 TCCTTCTGTGAGTGTGGCTC 59.318 55.000 0.00 0.00 44.36 4.70
1236 1242 3.704061 AGTTGTTTTCAGGCAAAAGGCTA 59.296 39.130 0.00 0.00 44.01 3.93
1569 1587 0.912486 ATGGGGTAGCTGAAGGTGAC 59.088 55.000 0.00 0.00 0.00 3.67
1935 1957 0.598065 ACCGAACCTGCAAAATGCTC 59.402 50.000 3.78 0.00 45.31 4.26
1949 1971 8.297470 TGCAAAATGCTCCTATAAGATTCTTT 57.703 30.769 3.86 0.00 45.31 2.52
1977 1999 3.130160 GGCTCCAGGCGCTCAAAG 61.130 66.667 7.64 1.42 42.94 2.77
2141 2167 7.648112 ACGTGCAATTACTGTATATCTGTACTG 59.352 37.037 0.00 0.00 31.84 2.74
2239 2266 4.215109 ACTTTTGATGTGTTTAGCCACCT 58.785 39.130 0.00 0.00 34.35 4.00
2258 2285 5.509670 CCACCTTCTCCCAGAATTTTCAAAC 60.510 44.000 0.00 0.00 33.13 2.93
2332 2359 3.682858 TCCGTTCCGAAAGATGATTGTTC 59.317 43.478 0.00 0.00 0.00 3.18
2357 2384 2.836360 GTCGGTCGGGCATAGGGA 60.836 66.667 0.00 0.00 0.00 4.20
2371 2398 1.429930 TAGGGATCTATTGCCGCCAA 58.570 50.000 0.00 0.00 41.66 4.52
2455 2482 3.821033 CCTCTCTTTCACCCGTTCAAATT 59.179 43.478 0.00 0.00 0.00 1.82
2496 2523 2.431057 GTGTACACTAGCTAGGGCACAT 59.569 50.000 27.70 10.34 41.70 3.21
2577 2604 2.315925 TCGAGGATGTCAAAGGCATC 57.684 50.000 3.11 3.11 41.30 3.91
2603 2630 3.048600 AGGGGCTCATGTTATCAGCTAA 58.951 45.455 3.65 0.00 0.00 3.09
2636 2663 3.600388 GAGTGAAGGTAGGGACAACATG 58.400 50.000 0.00 0.00 0.00 3.21
2643 2670 1.195442 TAGGGACAACATGCACGGGA 61.195 55.000 0.00 0.00 0.00 5.14
2647 2674 1.234821 GACAACATGCACGGGAAAGA 58.765 50.000 0.00 0.00 0.00 2.52
2696 2723 1.808411 CAGCGGGCTTACTTTTCTCA 58.192 50.000 0.00 0.00 0.00 3.27
2703 2730 3.369576 GGGCTTACTTTTCTCAGATCGGT 60.370 47.826 0.00 0.00 0.00 4.69
2727 2754 1.904771 CATGCTTCGGTGGTAGGGA 59.095 57.895 0.00 0.00 0.00 4.20
2784 2811 7.604545 GGGATGAAAGGAGCTTGTAGATAATAC 59.395 40.741 0.00 0.00 0.00 1.89
2874 2901 5.200483 TGATAAGGAGCTTTTGGTAATGGG 58.800 41.667 0.00 0.00 0.00 4.00
2887 2914 2.494073 GGTAATGGGGAAATTTGACGCA 59.506 45.455 0.00 3.53 0.00 5.24
2893 2920 4.082845 TGGGGAAATTTGACGCAGATAAA 58.917 39.130 0.00 0.00 0.00 1.40
2944 2971 2.698797 TCCGATGTGGATTAGGGTCTTC 59.301 50.000 0.00 0.00 43.74 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.236935 CAGTCGGTTTTCAAAATGATGGG 58.763 43.478 0.00 0.00 0.00 4.00
1 2 4.870363 ACAGTCGGTTTTCAAAATGATGG 58.130 39.130 0.00 0.00 0.00 3.51
2 3 6.208644 AGAACAGTCGGTTTTCAAAATGATG 58.791 36.000 0.00 0.00 40.63 3.07
3 4 6.391227 AGAACAGTCGGTTTTCAAAATGAT 57.609 33.333 0.00 0.00 40.63 2.45
4 5 5.828299 AGAACAGTCGGTTTTCAAAATGA 57.172 34.783 0.00 0.00 40.63 2.57
5 6 6.885735 AAAGAACAGTCGGTTTTCAAAATG 57.114 33.333 0.00 0.00 40.63 2.32
6 7 7.899178 AAAAAGAACAGTCGGTTTTCAAAAT 57.101 28.000 0.00 0.00 40.63 1.82
27 28 4.543590 TTCCAAACACAGAAGCCAAAAA 57.456 36.364 0.00 0.00 0.00 1.94
28 29 4.543590 TTTCCAAACACAGAAGCCAAAA 57.456 36.364 0.00 0.00 0.00 2.44
29 30 4.543590 TTTTCCAAACACAGAAGCCAAA 57.456 36.364 0.00 0.00 0.00 3.28
30 31 4.543590 TTTTTCCAAACACAGAAGCCAA 57.456 36.364 0.00 0.00 0.00 4.52
48 49 3.119495 GCTGACCTGTCAACACACTTTTT 60.119 43.478 1.14 0.00 39.39 1.94
49 50 2.423538 GCTGACCTGTCAACACACTTTT 59.576 45.455 1.14 0.00 39.39 2.27
50 51 2.017049 GCTGACCTGTCAACACACTTT 58.983 47.619 1.14 0.00 39.39 2.66
51 52 1.210478 AGCTGACCTGTCAACACACTT 59.790 47.619 1.14 0.00 39.39 3.16
52 53 0.833287 AGCTGACCTGTCAACACACT 59.167 50.000 1.14 0.00 39.39 3.55
53 54 1.202580 AGAGCTGACCTGTCAACACAC 60.203 52.381 0.00 0.00 39.39 3.82
54 55 1.123077 AGAGCTGACCTGTCAACACA 58.877 50.000 0.00 0.00 39.39 3.72
55 56 1.506493 CAGAGCTGACCTGTCAACAC 58.494 55.000 0.00 0.00 39.39 3.32
56 57 0.394192 CCAGAGCTGACCTGTCAACA 59.606 55.000 0.00 0.00 39.39 3.33
57 58 0.394565 ACCAGAGCTGACCTGTCAAC 59.605 55.000 0.00 0.00 39.39 3.18
58 59 0.394192 CACCAGAGCTGACCTGTCAA 59.606 55.000 0.00 0.00 39.39 3.18
59 60 1.475169 CCACCAGAGCTGACCTGTCA 61.475 60.000 0.00 0.00 38.06 3.58
60 61 1.188219 TCCACCAGAGCTGACCTGTC 61.188 60.000 0.00 0.00 0.00 3.51
61 62 0.546267 ATCCACCAGAGCTGACCTGT 60.546 55.000 0.00 0.00 0.00 4.00
62 63 0.177604 GATCCACCAGAGCTGACCTG 59.822 60.000 0.00 0.00 0.00 4.00
63 64 0.042431 AGATCCACCAGAGCTGACCT 59.958 55.000 0.00 0.00 40.58 3.85
64 65 1.781786 TAGATCCACCAGAGCTGACC 58.218 55.000 0.00 0.00 42.55 4.02
65 66 3.449018 TCTTTAGATCCACCAGAGCTGAC 59.551 47.826 0.00 0.00 42.55 3.51
66 67 3.713003 TCTTTAGATCCACCAGAGCTGA 58.287 45.455 0.00 0.00 42.55 4.26
67 68 4.440880 CTTCTTTAGATCCACCAGAGCTG 58.559 47.826 0.00 0.00 42.55 4.24
68 69 3.454082 CCTTCTTTAGATCCACCAGAGCT 59.546 47.826 0.00 0.00 45.27 4.09
69 70 3.452627 TCCTTCTTTAGATCCACCAGAGC 59.547 47.826 0.00 0.00 0.00 4.09
70 71 4.100808 CCTCCTTCTTTAGATCCACCAGAG 59.899 50.000 0.00 0.00 0.00 3.35
71 72 4.033709 CCTCCTTCTTTAGATCCACCAGA 58.966 47.826 0.00 0.00 0.00 3.86
72 73 3.432890 GCCTCCTTCTTTAGATCCACCAG 60.433 52.174 0.00 0.00 0.00 4.00
73 74 2.505819 GCCTCCTTCTTTAGATCCACCA 59.494 50.000 0.00 0.00 0.00 4.17
74 75 2.483889 CGCCTCCTTCTTTAGATCCACC 60.484 54.545 0.00 0.00 0.00 4.61
75 76 2.168728 ACGCCTCCTTCTTTAGATCCAC 59.831 50.000 0.00 0.00 0.00 4.02
76 77 2.467880 ACGCCTCCTTCTTTAGATCCA 58.532 47.619 0.00 0.00 0.00 3.41
77 78 3.118738 TCAACGCCTCCTTCTTTAGATCC 60.119 47.826 0.00 0.00 0.00 3.36
78 79 4.124851 TCAACGCCTCCTTCTTTAGATC 57.875 45.455 0.00 0.00 0.00 2.75
79 80 4.553330 TTCAACGCCTCCTTCTTTAGAT 57.447 40.909 0.00 0.00 0.00 1.98
80 81 4.253685 CATTCAACGCCTCCTTCTTTAGA 58.746 43.478 0.00 0.00 0.00 2.10
81 82 4.003648 ACATTCAACGCCTCCTTCTTTAG 58.996 43.478 0.00 0.00 0.00 1.85
82 83 4.000988 GACATTCAACGCCTCCTTCTTTA 58.999 43.478 0.00 0.00 0.00 1.85
83 84 2.814336 GACATTCAACGCCTCCTTCTTT 59.186 45.455 0.00 0.00 0.00 2.52
84 85 2.039084 AGACATTCAACGCCTCCTTCTT 59.961 45.455 0.00 0.00 0.00 2.52
85 86 1.625818 AGACATTCAACGCCTCCTTCT 59.374 47.619 0.00 0.00 0.00 2.85
86 87 2.003301 GAGACATTCAACGCCTCCTTC 58.997 52.381 0.00 0.00 0.00 3.46
87 88 1.625818 AGAGACATTCAACGCCTCCTT 59.374 47.619 0.00 0.00 0.00 3.36
88 89 1.270907 AGAGACATTCAACGCCTCCT 58.729 50.000 0.00 0.00 0.00 3.69
89 90 2.961526 TAGAGACATTCAACGCCTCC 57.038 50.000 0.00 0.00 0.00 4.30
90 91 3.851098 ACTTAGAGACATTCAACGCCTC 58.149 45.455 0.00 0.00 0.00 4.70
91 92 3.963428 ACTTAGAGACATTCAACGCCT 57.037 42.857 0.00 0.00 0.00 5.52
92 93 3.994392 TCAACTTAGAGACATTCAACGCC 59.006 43.478 0.00 0.00 0.00 5.68
93 94 5.446473 CCATCAACTTAGAGACATTCAACGC 60.446 44.000 0.00 0.00 0.00 4.84
94 95 5.639506 ACCATCAACTTAGAGACATTCAACG 59.360 40.000 0.00 0.00 0.00 4.10
95 96 6.128172 CCACCATCAACTTAGAGACATTCAAC 60.128 42.308 0.00 0.00 0.00 3.18
96 97 5.939883 CCACCATCAACTTAGAGACATTCAA 59.060 40.000 0.00 0.00 0.00 2.69
97 98 5.491070 CCACCATCAACTTAGAGACATTCA 58.509 41.667 0.00 0.00 0.00 2.57
98 99 4.878397 CCCACCATCAACTTAGAGACATTC 59.122 45.833 0.00 0.00 0.00 2.67
99 100 4.289672 ACCCACCATCAACTTAGAGACATT 59.710 41.667 0.00 0.00 0.00 2.71
100 101 3.846588 ACCCACCATCAACTTAGAGACAT 59.153 43.478 0.00 0.00 0.00 3.06
101 102 3.248024 ACCCACCATCAACTTAGAGACA 58.752 45.455 0.00 0.00 0.00 3.41
102 103 3.983044 ACCCACCATCAACTTAGAGAC 57.017 47.619 0.00 0.00 0.00 3.36
103 104 7.622081 TCTTTATACCCACCATCAACTTAGAGA 59.378 37.037 0.00 0.00 0.00 3.10
104 105 7.792032 TCTTTATACCCACCATCAACTTAGAG 58.208 38.462 0.00 0.00 0.00 2.43
105 106 7.743116 TCTTTATACCCACCATCAACTTAGA 57.257 36.000 0.00 0.00 0.00 2.10
106 107 9.712305 CTATCTTTATACCCACCATCAACTTAG 57.288 37.037 0.00 0.00 0.00 2.18
107 108 9.220906 ACTATCTTTATACCCACCATCAACTTA 57.779 33.333 0.00 0.00 0.00 2.24
108 109 8.102484 ACTATCTTTATACCCACCATCAACTT 57.898 34.615 0.00 0.00 0.00 2.66
109 110 7.347222 TGACTATCTTTATACCCACCATCAACT 59.653 37.037 0.00 0.00 0.00 3.16
110 111 7.506114 TGACTATCTTTATACCCACCATCAAC 58.494 38.462 0.00 0.00 0.00 3.18
111 112 7.684317 TGACTATCTTTATACCCACCATCAA 57.316 36.000 0.00 0.00 0.00 2.57
112 113 7.567250 TCTTGACTATCTTTATACCCACCATCA 59.433 37.037 0.00 0.00 0.00 3.07
113 114 7.963532 TCTTGACTATCTTTATACCCACCATC 58.036 38.462 0.00 0.00 0.00 3.51
114 115 7.931015 TCTTGACTATCTTTATACCCACCAT 57.069 36.000 0.00 0.00 0.00 3.55
115 116 7.931015 ATCTTGACTATCTTTATACCCACCA 57.069 36.000 0.00 0.00 0.00 4.17
125 126 8.379331 GCCCTCCTATTAATCTTGACTATCTTT 58.621 37.037 0.00 0.00 0.00 2.52
126 127 7.737149 AGCCCTCCTATTAATCTTGACTATCTT 59.263 37.037 0.00 0.00 0.00 2.40
127 128 7.252678 AGCCCTCCTATTAATCTTGACTATCT 58.747 38.462 0.00 0.00 0.00 1.98
128 129 7.489239 AGCCCTCCTATTAATCTTGACTATC 57.511 40.000 0.00 0.00 0.00 2.08
129 130 8.974292 TTAGCCCTCCTATTAATCTTGACTAT 57.026 34.615 0.00 0.00 0.00 2.12
130 131 8.974292 ATTAGCCCTCCTATTAATCTTGACTA 57.026 34.615 0.00 0.00 0.00 2.59
131 132 7.880265 ATTAGCCCTCCTATTAATCTTGACT 57.120 36.000 0.00 0.00 0.00 3.41
132 133 9.606631 CATATTAGCCCTCCTATTAATCTTGAC 57.393 37.037 0.00 0.00 0.00 3.18
133 134 9.560860 TCATATTAGCCCTCCTATTAATCTTGA 57.439 33.333 0.00 0.00 0.00 3.02
136 137 9.735362 TCATCATATTAGCCCTCCTATTAATCT 57.265 33.333 0.00 0.00 0.00 2.40
137 138 9.771534 GTCATCATATTAGCCCTCCTATTAATC 57.228 37.037 0.00 0.00 0.00 1.75
138 139 9.512748 AGTCATCATATTAGCCCTCCTATTAAT 57.487 33.333 0.00 0.00 0.00 1.40
139 140 8.917414 AGTCATCATATTAGCCCTCCTATTAA 57.083 34.615 0.00 0.00 0.00 1.40
140 141 8.122481 TGAGTCATCATATTAGCCCTCCTATTA 58.878 37.037 0.00 0.00 0.00 0.98
141 142 6.962311 TGAGTCATCATATTAGCCCTCCTATT 59.038 38.462 0.00 0.00 0.00 1.73
142 143 6.382570 GTGAGTCATCATATTAGCCCTCCTAT 59.617 42.308 0.00 0.00 37.87 2.57
143 144 5.717178 GTGAGTCATCATATTAGCCCTCCTA 59.283 44.000 0.00 0.00 37.87 2.94
144 145 4.530161 GTGAGTCATCATATTAGCCCTCCT 59.470 45.833 0.00 0.00 37.87 3.69
145 146 4.619394 CGTGAGTCATCATATTAGCCCTCC 60.619 50.000 0.00 0.00 37.87 4.30
146 147 4.218635 TCGTGAGTCATCATATTAGCCCTC 59.781 45.833 0.00 0.00 37.87 4.30
147 148 4.152647 TCGTGAGTCATCATATTAGCCCT 58.847 43.478 0.00 0.00 37.87 5.19
148 149 4.218635 TCTCGTGAGTCATCATATTAGCCC 59.781 45.833 0.00 0.00 37.87 5.19
149 150 5.378292 TCTCGTGAGTCATCATATTAGCC 57.622 43.478 0.00 0.00 37.87 3.93
150 151 6.183360 GCAATCTCGTGAGTCATCATATTAGC 60.183 42.308 0.00 0.00 37.87 3.09
151 152 6.865205 TGCAATCTCGTGAGTCATCATATTAG 59.135 38.462 0.00 0.00 37.87 1.73
152 153 6.748132 TGCAATCTCGTGAGTCATCATATTA 58.252 36.000 0.00 0.00 37.87 0.98
153 154 5.604565 TGCAATCTCGTGAGTCATCATATT 58.395 37.500 0.00 0.00 37.87 1.28
154 155 5.205759 TGCAATCTCGTGAGTCATCATAT 57.794 39.130 0.00 0.00 37.87 1.78
155 156 4.654091 TGCAATCTCGTGAGTCATCATA 57.346 40.909 0.00 0.00 37.87 2.15
156 157 3.531934 TGCAATCTCGTGAGTCATCAT 57.468 42.857 0.00 0.00 37.87 2.45
157 158 3.317603 TTGCAATCTCGTGAGTCATCA 57.682 42.857 0.00 0.00 0.00 3.07
158 159 4.871993 ATTTGCAATCTCGTGAGTCATC 57.128 40.909 0.00 0.00 0.00 2.92
159 160 5.633830 AAATTTGCAATCTCGTGAGTCAT 57.366 34.783 0.00 0.00 0.00 3.06
160 161 5.437289 AAAATTTGCAATCTCGTGAGTCA 57.563 34.783 0.00 0.00 0.00 3.41
161 162 6.603095 ACTAAAATTTGCAATCTCGTGAGTC 58.397 36.000 0.00 0.00 0.00 3.36
162 163 6.560253 ACTAAAATTTGCAATCTCGTGAGT 57.440 33.333 0.00 0.00 0.00 3.41
163 164 7.858052 AAACTAAAATTTGCAATCTCGTGAG 57.142 32.000 0.00 0.00 0.00 3.51
164 165 7.918033 TCAAAACTAAAATTTGCAATCTCGTGA 59.082 29.630 0.00 0.00 37.62 4.35
165 166 8.060020 TCAAAACTAAAATTTGCAATCTCGTG 57.940 30.769 0.00 0.00 37.62 4.35
166 167 8.816640 ATCAAAACTAAAATTTGCAATCTCGT 57.183 26.923 0.00 0.00 37.62 4.18
174 175 9.569167 GGACCTACTATCAAAACTAAAATTTGC 57.431 33.333 0.00 0.00 37.62 3.68
175 176 9.769093 CGGACCTACTATCAAAACTAAAATTTG 57.231 33.333 0.00 0.00 38.76 2.32
176 177 9.729281 TCGGACCTACTATCAAAACTAAAATTT 57.271 29.630 0.00 0.00 0.00 1.82
177 178 9.901172 ATCGGACCTACTATCAAAACTAAAATT 57.099 29.630 0.00 0.00 0.00 1.82
178 179 9.326413 CATCGGACCTACTATCAAAACTAAAAT 57.674 33.333 0.00 0.00 0.00 1.82
179 180 7.767198 CCATCGGACCTACTATCAAAACTAAAA 59.233 37.037 0.00 0.00 0.00 1.52
180 181 7.093201 ACCATCGGACCTACTATCAAAACTAAA 60.093 37.037 0.00 0.00 0.00 1.85
181 182 6.381994 ACCATCGGACCTACTATCAAAACTAA 59.618 38.462 0.00 0.00 0.00 2.24
182 183 5.895534 ACCATCGGACCTACTATCAAAACTA 59.104 40.000 0.00 0.00 0.00 2.24
183 184 4.715297 ACCATCGGACCTACTATCAAAACT 59.285 41.667 0.00 0.00 0.00 2.66
184 185 5.019785 ACCATCGGACCTACTATCAAAAC 57.980 43.478 0.00 0.00 0.00 2.43
185 186 6.989155 ATACCATCGGACCTACTATCAAAA 57.011 37.500 0.00 0.00 0.00 2.44
186 187 6.781014 AGAATACCATCGGACCTACTATCAAA 59.219 38.462 0.00 0.00 0.00 2.69
187 188 6.312529 AGAATACCATCGGACCTACTATCAA 58.687 40.000 0.00 0.00 0.00 2.57
188 189 5.888901 AGAATACCATCGGACCTACTATCA 58.111 41.667 0.00 0.00 0.00 2.15
189 190 6.837471 AAGAATACCATCGGACCTACTATC 57.163 41.667 0.00 0.00 0.00 2.08
190 191 7.613551 AAAAGAATACCATCGGACCTACTAT 57.386 36.000 0.00 0.00 0.00 2.12
191 192 7.427989 AAAAAGAATACCATCGGACCTACTA 57.572 36.000 0.00 0.00 0.00 1.82
192 193 5.952347 AAAAGAATACCATCGGACCTACT 57.048 39.130 0.00 0.00 0.00 2.57
193 194 7.550196 TGTTAAAAAGAATACCATCGGACCTAC 59.450 37.037 0.00 0.00 0.00 3.18
194 195 7.550196 GTGTTAAAAAGAATACCATCGGACCTA 59.450 37.037 0.00 0.00 0.00 3.08
195 196 6.373495 GTGTTAAAAAGAATACCATCGGACCT 59.627 38.462 0.00 0.00 0.00 3.85
196 197 6.373495 AGTGTTAAAAAGAATACCATCGGACC 59.627 38.462 0.00 0.00 0.00 4.46
197 198 7.094933 ACAGTGTTAAAAAGAATACCATCGGAC 60.095 37.037 0.00 0.00 0.00 4.79
198 199 6.938030 ACAGTGTTAAAAAGAATACCATCGGA 59.062 34.615 0.00 0.00 0.00 4.55
199 200 7.141100 ACAGTGTTAAAAAGAATACCATCGG 57.859 36.000 0.00 0.00 0.00 4.18
200 201 8.932791 AGTACAGTGTTAAAAAGAATACCATCG 58.067 33.333 0.00 0.00 0.00 3.84
203 204 8.842280 CCAAGTACAGTGTTAAAAAGAATACCA 58.158 33.333 0.00 0.00 0.00 3.25
204 205 7.806487 GCCAAGTACAGTGTTAAAAAGAATACC 59.194 37.037 0.00 0.00 0.00 2.73
205 206 8.565416 AGCCAAGTACAGTGTTAAAAAGAATAC 58.435 33.333 0.00 0.00 0.00 1.89
206 207 8.685838 AGCCAAGTACAGTGTTAAAAAGAATA 57.314 30.769 0.00 0.00 0.00 1.75
207 208 7.582667 AGCCAAGTACAGTGTTAAAAAGAAT 57.417 32.000 0.00 0.00 0.00 2.40
208 209 8.508883 TTAGCCAAGTACAGTGTTAAAAAGAA 57.491 30.769 0.00 0.00 0.00 2.52
209 210 8.685838 ATTAGCCAAGTACAGTGTTAAAAAGA 57.314 30.769 0.00 0.00 0.00 2.52
210 211 9.744468 AAATTAGCCAAGTACAGTGTTAAAAAG 57.256 29.630 0.00 0.00 0.00 2.27
212 213 9.522804 CAAAATTAGCCAAGTACAGTGTTAAAA 57.477 29.630 0.00 0.00 0.00 1.52
213 214 8.688151 ACAAAATTAGCCAAGTACAGTGTTAAA 58.312 29.630 0.00 0.00 0.00 1.52
214 215 8.228035 ACAAAATTAGCCAAGTACAGTGTTAA 57.772 30.769 0.00 0.00 0.00 2.01
215 216 7.811117 ACAAAATTAGCCAAGTACAGTGTTA 57.189 32.000 0.00 0.00 0.00 2.41
216 217 6.709018 ACAAAATTAGCCAAGTACAGTGTT 57.291 33.333 0.00 0.00 0.00 3.32
217 218 7.811117 TTACAAAATTAGCCAAGTACAGTGT 57.189 32.000 0.00 0.00 0.00 3.55
218 219 9.769093 GTATTACAAAATTAGCCAAGTACAGTG 57.231 33.333 0.00 0.00 0.00 3.66
219 220 8.662141 CGTATTACAAAATTAGCCAAGTACAGT 58.338 33.333 0.00 0.00 0.00 3.55
220 221 8.875803 TCGTATTACAAAATTAGCCAAGTACAG 58.124 33.333 0.00 0.00 0.00 2.74
221 222 8.774890 TCGTATTACAAAATTAGCCAAGTACA 57.225 30.769 0.00 0.00 0.00 2.90
224 225 9.968870 TTTTTCGTATTACAAAATTAGCCAAGT 57.031 25.926 0.00 0.00 0.00 3.16
226 227 9.413048 CCTTTTTCGTATTACAAAATTAGCCAA 57.587 29.630 0.00 0.00 0.00 4.52
227 228 8.030106 CCCTTTTTCGTATTACAAAATTAGCCA 58.970 33.333 0.00 0.00 0.00 4.75
228 229 8.030692 ACCCTTTTTCGTATTACAAAATTAGCC 58.969 33.333 0.00 0.00 0.00 3.93
229 230 8.975410 ACCCTTTTTCGTATTACAAAATTAGC 57.025 30.769 0.00 0.00 0.00 3.09
245 246 1.961394 AGCGAGGGAAAACCCTTTTTC 59.039 47.619 9.28 0.00 46.88 2.29
246 247 2.082140 AGCGAGGGAAAACCCTTTTT 57.918 45.000 9.28 0.00 40.79 1.94
247 248 2.082140 AAGCGAGGGAAAACCCTTTT 57.918 45.000 9.28 2.77 40.79 2.27
248 249 2.082140 AAAGCGAGGGAAAACCCTTT 57.918 45.000 9.28 0.00 40.79 3.11
249 250 2.963599 TAAAGCGAGGGAAAACCCTT 57.036 45.000 9.28 0.00 40.79 3.95
250 251 4.790718 ATATAAAGCGAGGGAAAACCCT 57.209 40.909 7.59 7.59 43.84 4.34
251 252 8.803397 ATAATATATAAAGCGAGGGAAAACCC 57.197 34.615 0.00 0.00 41.63 4.11
265 266 9.815306 TGGGGCTGTTGCTTTATAATATATAAA 57.185 29.630 3.35 3.35 39.59 1.40
266 267 9.815306 TTGGGGCTGTTGCTTTATAATATATAA 57.185 29.630 0.00 0.00 39.59 0.98
267 268 9.461312 CTTGGGGCTGTTGCTTTATAATATATA 57.539 33.333 0.00 0.00 39.59 0.86
268 269 7.093771 GCTTGGGGCTGTTGCTTTATAATATAT 60.094 37.037 0.00 0.00 39.59 0.86
269 270 6.208599 GCTTGGGGCTGTTGCTTTATAATATA 59.791 38.462 0.00 0.00 39.59 0.86
270 271 5.011023 GCTTGGGGCTGTTGCTTTATAATAT 59.989 40.000 0.00 0.00 39.59 1.28
271 272 4.340950 GCTTGGGGCTGTTGCTTTATAATA 59.659 41.667 0.00 0.00 39.59 0.98
272 273 3.132824 GCTTGGGGCTGTTGCTTTATAAT 59.867 43.478 0.00 0.00 39.59 1.28
273 274 2.495669 GCTTGGGGCTGTTGCTTTATAA 59.504 45.455 0.00 0.00 39.59 0.98
274 275 2.099405 GCTTGGGGCTGTTGCTTTATA 58.901 47.619 0.00 0.00 39.59 0.98
275 276 0.897621 GCTTGGGGCTGTTGCTTTAT 59.102 50.000 0.00 0.00 39.59 1.40
276 277 0.468958 TGCTTGGGGCTGTTGCTTTA 60.469 50.000 0.00 0.00 42.39 1.85
277 278 1.123246 ATGCTTGGGGCTGTTGCTTT 61.123 50.000 0.00 0.00 42.39 3.51
278 279 1.534717 ATGCTTGGGGCTGTTGCTT 60.535 52.632 0.00 0.00 42.39 3.91
279 280 1.980772 GATGCTTGGGGCTGTTGCT 60.981 57.895 0.00 0.00 42.39 3.91
280 281 2.575461 GATGCTTGGGGCTGTTGC 59.425 61.111 0.00 0.00 42.39 4.17
281 282 1.186917 TTGGATGCTTGGGGCTGTTG 61.187 55.000 0.00 0.00 42.39 3.33
282 283 1.155859 TTGGATGCTTGGGGCTGTT 59.844 52.632 0.00 0.00 42.39 3.16
283 284 1.607467 GTTGGATGCTTGGGGCTGT 60.607 57.895 0.00 0.00 42.39 4.40
284 285 1.186917 TTGTTGGATGCTTGGGGCTG 61.187 55.000 0.00 0.00 42.39 4.85
285 286 1.155859 TTGTTGGATGCTTGGGGCT 59.844 52.632 0.00 0.00 42.39 5.19
286 287 1.293179 GTTGTTGGATGCTTGGGGC 59.707 57.895 0.00 0.00 42.22 5.80
287 288 0.318120 GTGTTGTTGGATGCTTGGGG 59.682 55.000 0.00 0.00 0.00 4.96
288 289 0.039256 CGTGTTGTTGGATGCTTGGG 60.039 55.000 0.00 0.00 0.00 4.12
289 290 0.039256 CCGTGTTGTTGGATGCTTGG 60.039 55.000 0.00 0.00 0.00 3.61
290 291 0.667993 ACCGTGTTGTTGGATGCTTG 59.332 50.000 0.00 0.00 0.00 4.01
291 292 1.398692 AACCGTGTTGTTGGATGCTT 58.601 45.000 0.00 0.00 0.00 3.91
292 293 1.398692 AAACCGTGTTGTTGGATGCT 58.601 45.000 0.00 0.00 0.00 3.79
293 294 3.357166 TTAAACCGTGTTGTTGGATGC 57.643 42.857 0.00 0.00 0.00 3.91
294 295 4.927422 ACTTTAAACCGTGTTGTTGGATG 58.073 39.130 0.00 0.00 0.00 3.51
295 296 5.589452 TGTACTTTAAACCGTGTTGTTGGAT 59.411 36.000 0.00 0.00 0.00 3.41
296 297 4.940046 TGTACTTTAAACCGTGTTGTTGGA 59.060 37.500 0.00 0.00 0.00 3.53
297 298 5.232610 TGTACTTTAAACCGTGTTGTTGG 57.767 39.130 0.00 0.00 0.00 3.77
298 299 5.163733 ACCTGTACTTTAAACCGTGTTGTTG 60.164 40.000 0.00 0.00 0.00 3.33
299 300 4.943093 ACCTGTACTTTAAACCGTGTTGTT 59.057 37.500 0.00 0.00 0.00 2.83
300 301 4.516323 ACCTGTACTTTAAACCGTGTTGT 58.484 39.130 0.00 0.00 0.00 3.32
301 302 6.424509 TGATACCTGTACTTTAAACCGTGTTG 59.575 38.462 0.00 0.00 0.00 3.33
302 303 6.523840 TGATACCTGTACTTTAAACCGTGTT 58.476 36.000 0.00 0.00 0.00 3.32
303 304 6.100404 TGATACCTGTACTTTAAACCGTGT 57.900 37.500 0.00 0.00 0.00 4.49
304 305 6.647895 ACTTGATACCTGTACTTTAAACCGTG 59.352 38.462 0.00 0.00 0.00 4.94
305 306 6.762333 ACTTGATACCTGTACTTTAAACCGT 58.238 36.000 0.00 0.00 0.00 4.83
306 307 7.008628 CGTACTTGATACCTGTACTTTAAACCG 59.991 40.741 0.00 0.00 35.67 4.44
307 308 7.814587 ACGTACTTGATACCTGTACTTTAAACC 59.185 37.037 0.00 0.00 35.67 3.27
308 309 8.642020 CACGTACTTGATACCTGTACTTTAAAC 58.358 37.037 0.00 0.00 35.67 2.01
309 310 7.814107 CCACGTACTTGATACCTGTACTTTAAA 59.186 37.037 0.00 0.00 35.67 1.52
310 311 7.315142 CCACGTACTTGATACCTGTACTTTAA 58.685 38.462 0.00 0.00 35.67 1.52
311 312 6.625740 GCCACGTACTTGATACCTGTACTTTA 60.626 42.308 0.00 0.00 35.67 1.85
312 313 5.717119 CCACGTACTTGATACCTGTACTTT 58.283 41.667 0.00 0.00 35.67 2.66
313 314 4.381292 GCCACGTACTTGATACCTGTACTT 60.381 45.833 0.00 0.00 35.67 2.24
314 315 3.129988 GCCACGTACTTGATACCTGTACT 59.870 47.826 0.00 0.00 35.67 2.73
315 316 3.129988 AGCCACGTACTTGATACCTGTAC 59.870 47.826 0.00 0.00 34.80 2.90
316 317 3.359033 AGCCACGTACTTGATACCTGTA 58.641 45.455 0.00 0.00 0.00 2.74
317 318 2.176889 AGCCACGTACTTGATACCTGT 58.823 47.619 0.00 0.00 0.00 4.00
318 319 2.961526 AGCCACGTACTTGATACCTG 57.038 50.000 0.00 0.00 0.00 4.00
319 320 5.609533 AATTAGCCACGTACTTGATACCT 57.390 39.130 0.00 0.00 0.00 3.08
320 321 6.093082 ACAAAATTAGCCACGTACTTGATACC 59.907 38.462 0.00 0.00 0.00 2.73
321 322 7.068692 ACAAAATTAGCCACGTACTTGATAC 57.931 36.000 0.00 0.00 0.00 2.24
322 323 8.774890 TTACAAAATTAGCCACGTACTTGATA 57.225 30.769 0.00 0.00 0.00 2.15
323 324 7.675962 TTACAAAATTAGCCACGTACTTGAT 57.324 32.000 0.00 0.00 0.00 2.57
324 325 7.388224 TCATTACAAAATTAGCCACGTACTTGA 59.612 33.333 0.00 0.00 0.00 3.02
325 326 7.523219 TCATTACAAAATTAGCCACGTACTTG 58.477 34.615 0.00 0.00 0.00 3.16
326 327 7.675962 TCATTACAAAATTAGCCACGTACTT 57.324 32.000 0.00 0.00 0.00 2.24
327 328 7.524065 GTTCATTACAAAATTAGCCACGTACT 58.476 34.615 0.00 0.00 0.00 2.73
328 329 6.463576 CGTTCATTACAAAATTAGCCACGTAC 59.536 38.462 0.00 0.00 0.00 3.67
329 330 6.368243 TCGTTCATTACAAAATTAGCCACGTA 59.632 34.615 0.00 0.00 0.00 3.57
330 331 5.179742 TCGTTCATTACAAAATTAGCCACGT 59.820 36.000 0.00 0.00 0.00 4.49
331 332 5.623335 TCGTTCATTACAAAATTAGCCACG 58.377 37.500 0.00 0.00 0.00 4.94
332 333 7.540745 ACAATCGTTCATTACAAAATTAGCCAC 59.459 33.333 0.00 0.00 0.00 5.01
333 334 7.598278 ACAATCGTTCATTACAAAATTAGCCA 58.402 30.769 0.00 0.00 0.00 4.75
334 335 9.730420 ATACAATCGTTCATTACAAAATTAGCC 57.270 29.630 0.00 0.00 0.00 3.93
375 376 9.877178 TTTTGAAAACCGCACCATATATTAATT 57.123 25.926 0.00 0.00 0.00 1.40
376 377 9.877178 TTTTTGAAAACCGCACCATATATTAAT 57.123 25.926 0.00 0.00 0.00 1.40
403 404 8.931775 GCGGATTGTTGGATTTTTATAAAAGTT 58.068 29.630 10.40 3.45 0.00 2.66
404 405 7.547722 GGCGGATTGTTGGATTTTTATAAAAGT 59.452 33.333 10.40 8.09 0.00 2.66
405 406 7.547370 TGGCGGATTGTTGGATTTTTATAAAAG 59.453 33.333 10.40 0.00 0.00 2.27
406 407 7.386851 TGGCGGATTGTTGGATTTTTATAAAA 58.613 30.769 6.54 6.54 0.00 1.52
407 408 6.936279 TGGCGGATTGTTGGATTTTTATAAA 58.064 32.000 0.00 0.00 0.00 1.40
408 409 6.531503 TGGCGGATTGTTGGATTTTTATAA 57.468 33.333 0.00 0.00 0.00 0.98
409 410 6.531503 TTGGCGGATTGTTGGATTTTTATA 57.468 33.333 0.00 0.00 0.00 0.98
410 411 5.413309 TTGGCGGATTGTTGGATTTTTAT 57.587 34.783 0.00 0.00 0.00 1.40
411 412 4.873746 TTGGCGGATTGTTGGATTTTTA 57.126 36.364 0.00 0.00 0.00 1.52
412 413 3.760580 TTGGCGGATTGTTGGATTTTT 57.239 38.095 0.00 0.00 0.00 1.94
413 414 3.398406 GTTTGGCGGATTGTTGGATTTT 58.602 40.909 0.00 0.00 0.00 1.82
414 415 2.289382 GGTTTGGCGGATTGTTGGATTT 60.289 45.455 0.00 0.00 0.00 2.17
415 416 1.275010 GGTTTGGCGGATTGTTGGATT 59.725 47.619 0.00 0.00 0.00 3.01
416 417 0.894835 GGTTTGGCGGATTGTTGGAT 59.105 50.000 0.00 0.00 0.00 3.41
417 418 0.468214 TGGTTTGGCGGATTGTTGGA 60.468 50.000 0.00 0.00 0.00 3.53
418 419 0.038343 CTGGTTTGGCGGATTGTTGG 60.038 55.000 0.00 0.00 0.00 3.77
419 420 0.667184 GCTGGTTTGGCGGATTGTTG 60.667 55.000 0.00 0.00 0.00 3.33
420 421 0.827507 AGCTGGTTTGGCGGATTGTT 60.828 50.000 0.00 0.00 34.52 2.83
421 422 0.827507 AAGCTGGTTTGGCGGATTGT 60.828 50.000 0.00 0.00 34.52 2.71
422 423 1.173043 TAAGCTGGTTTGGCGGATTG 58.827 50.000 0.00 0.00 34.52 2.67
423 424 1.818674 CTTAAGCTGGTTTGGCGGATT 59.181 47.619 0.00 0.00 34.52 3.01
424 425 1.463674 CTTAAGCTGGTTTGGCGGAT 58.536 50.000 0.00 0.00 34.52 4.18
425 426 0.608035 CCTTAAGCTGGTTTGGCGGA 60.608 55.000 0.00 0.00 34.52 5.54
426 427 0.608035 TCCTTAAGCTGGTTTGGCGG 60.608 55.000 0.00 0.00 34.52 6.13
427 428 1.243902 TTCCTTAAGCTGGTTTGGCG 58.756 50.000 0.00 0.00 34.52 5.69
428 429 3.744238 TTTTCCTTAAGCTGGTTTGGC 57.256 42.857 0.00 0.00 0.00 4.52
752 753 0.039618 ATGGCCTGGATGTTTCCGTT 59.960 50.000 3.32 0.00 45.89 4.44
833 834 1.134098 AGATAAAGTGGGGATGCGTGG 60.134 52.381 0.00 0.00 0.00 4.94
931 932 1.995253 CTCGTTAAGCGCGTTCGTCC 61.995 60.000 8.43 0.00 41.07 4.79
949 950 2.078665 ACCTCCACCACCACTTGCT 61.079 57.895 0.00 0.00 0.00 3.91
964 965 1.533469 GGTCAGTGTACGCCTCACCT 61.533 60.000 1.98 0.00 36.58 4.00
1169 1170 2.171940 GCACGCGCAAGTTCTCAG 59.828 61.111 5.73 0.00 38.36 3.35
1236 1242 2.023414 TTGACACCACGTTCCTCGCT 62.023 55.000 0.00 0.00 44.19 4.93
1395 1405 3.941188 ACCCTGTCCCACTGCACG 61.941 66.667 0.00 0.00 0.00 5.34
1719 1737 6.245408 ACCAGTAAAATCAATCTTAGGCACA 58.755 36.000 0.00 0.00 0.00 4.57
1971 1993 8.090250 TGCAAAATCCATTGAAATTCTTTGAG 57.910 30.769 6.00 0.00 31.84 3.02
1977 1999 7.437793 TTTCCTGCAAAATCCATTGAAATTC 57.562 32.000 0.00 0.00 31.84 2.17
2013 2035 3.684788 CCTCGTAAATGTTCCTGACCTTG 59.315 47.826 0.00 0.00 0.00 3.61
2239 2266 4.211920 ACCGTTTGAAAATTCTGGGAGAA 58.788 39.130 0.00 0.00 38.78 2.87
2258 2285 0.605589 TGGCAAGGGCAAAATTACCG 59.394 50.000 0.00 0.00 43.71 4.02
2357 2384 1.451207 TGCGTTGGCGGCAATAGAT 60.451 52.632 28.07 0.00 44.10 1.98
2455 2482 3.870723 CGAAAGACGTTTGTGGATTGA 57.129 42.857 0.00 0.00 37.22 2.57
2496 2523 4.381612 GGAAGAGTCGGTGTTGTATGATCA 60.382 45.833 0.00 0.00 0.00 2.92
2603 2630 0.338120 CTTCACTCCCCTCCTCTCCT 59.662 60.000 0.00 0.00 0.00 3.69
2636 2663 2.096496 CACATCATCTTCTTTCCCGTGC 59.904 50.000 0.00 0.00 0.00 5.34
2643 2670 3.117360 GGATCCCCCACATCATCTTCTTT 60.117 47.826 0.00 0.00 34.14 2.52
2685 2712 4.921515 CGTTGACCGATCTGAGAAAAGTAA 59.078 41.667 0.00 0.00 39.56 2.24
2696 2723 0.391661 AAGCATGCGTTGACCGATCT 60.392 50.000 13.01 0.00 39.56 2.75
2703 2730 2.324330 CCACCGAAGCATGCGTTGA 61.324 57.895 20.95 0.00 32.87 3.18
2757 2784 2.505819 TCTACAAGCTCCTTTCATCCCC 59.494 50.000 0.00 0.00 0.00 4.81
2759 2786 7.604545 GGTATTATCTACAAGCTCCTTTCATCC 59.395 40.741 0.00 0.00 0.00 3.51
2784 2811 5.935789 TCCTGTCGGAAAGTGTATAAAAAGG 59.064 40.000 0.00 0.00 36.03 3.11
2800 2827 1.764571 TTCACCCCAACTCCTGTCGG 61.765 60.000 0.00 0.00 0.00 4.79
2803 2830 0.401395 TCCTTCACCCCAACTCCTGT 60.401 55.000 0.00 0.00 0.00 4.00
2874 2901 6.149633 ACTGTTTTATCTGCGTCAAATTTCC 58.850 36.000 0.00 0.00 0.00 3.13
2887 2914 8.140112 AGTCATACTCCTCAACTGTTTTATCT 57.860 34.615 0.00 0.00 0.00 1.98
2893 2920 5.808366 TGAAGTCATACTCCTCAACTGTT 57.192 39.130 0.00 0.00 0.00 3.16
2993 3020 4.343814 ACCCACCAACTCATCGAAATTTTT 59.656 37.500 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.