>input_sequence_62098
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----------------------------------------ATGGCCCCGACCGTCGCCTCCCCAGCCACGGGCGCCGTCG
CCTCGCCCATCGCGAGCGACCTCGGGAAGGCCGCGCGCTCCGTCGGGCTCGGGCTCCCCGCGCTGCCGCCGCTGCCCGGC
CTCGCGTCCCACGGCCAGCCCCGCGTCGCGTCCTTCTGTGAGTGTGGCTCTGAGAACTTGCGCG----TGCAGCGGCATG
GGACGTGGATCTAAGAAGAGTTGTTTTC-AGGCAAAAGGCTAGCGAGGAACGTGGTGTCAATGGCCGCCGGTGAGCCGGC
GGCGCCGCTGGCCGACAACGCCGAGCTTACCGAGTTCTTCAACGGCTTGAAACAAGAGGTACGTAC----GTGGCACGTT
GGAGTTCATTAGTTGTGGCGCGAGTGACTGACACCTCGTCACGGCGTG--------CAGTGGGACAGGGTGGAGGACAAG
TACGCGGTGACCACGCTTGCCGTCGCCGCCACCCTCGGCATGTGGAGCGCCGGCGGAGTAGTATCGGTACTGAAGACGCT
TACCTCAACTGTTTGTGGAACAAGTTGTTTAAAAAATCACTGAGTTGATGGGGTAGCTGAAGGTGACTTTGGTGTTAACC
TTGCAGGCAATCGACAGGCTCCCCGTGGTTCCAGGTCTCATGGAGGTCGTTGGCATTGGCTACAGCGGGGTAAGAAAGAT
CCACAGCTCAACAGAACCTCGATACCGTGATAACGTTTGCTATTCGCAAAATGCAATGTGCCTAAGATTGATTTTACTGG
TCAATCTGGTCATTAATTTGATCATGCTGTACAAGTCTGCCATTCTTCCATCGCTGCCAATTTTC----TAAGAGTTTCC
CATTTTGATCCGTTCTTCTGAATTTCTAATACATGCAGTGGTTTGCGTACAAGAACCTGCTATTCAAGCCCGACAGGTAT
TGAAACACAGCCTTTGTACCGAACCTGCAAAATGCTCCTATAAGATTCTTTAGATAAGGAGGGCTCCAGGCGCTCAAAGA
ATTTCAATGGATTTTGCAGGAAAGCGTTCTTCGCCAAGGTCAGGAACATTTACGAGGATATAATCAGCGGCTAG------
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>chr1D_1_TraesCS1D01G203500
CCCATCATTTTGAAAACCGACTGTTCTTTTTTGGCTTCTGTGTTTGGAAAAAAGTGTGTTGACAGGTCAGCTCTGGTGGA
TCTAAAGAAGGAGGCGTTGAATGTCTCTAAGTTGATGGTGGGTATAAAGATAGTCAAGATTAATAGGAGGGCTAATATGA
TGACTCACGAGATTGCAAATTTTAGTTTTGATAGTAGGTCCGATGGTATTCTTTTTAACACTGTACTTGGCTAATTTTGT
AATACGAAAAAGGGTTTTCCCTCGCTTTATATATTATAAAGCAACAGCCCCAAGCATCCAACAACACGGTTTAAAGTACA
GGTATCAAGTACGTGGCTAATTTTGTAATGAACGATTGTATGAACATTTTAAATTAATTAATATATGGTGCGGTTTTCAA
AAAAACTTTTATAAAAATCCAACAATCCGCCAAACCAGCTTAAGGAAAAAAAACAGNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTAAACACCAGAAACTCCCGATACCGCAAACGGAAACATCCAGGCCATACAGAGCCCACCCCAAACCCCATCTTAT
CGTTCTTCCGCGCGCAATCGTGTGGCGCCCATCCCACGCATCCCCACTTTATCTTTGCGCGCCCAAACCCGGCCGCTCCC
TAACCTCCCGCAGGACGCCGTCCCACCGACCTCGAGGCCGTTATTAGCCTCGGACGAACGCGCTTAACGAGCAAGTGGTG
GTGGAGGTGAGGCGTACACTGACCGAAGGCATCGATCTCCATGGCCCCGACCGTCGCCTCCCCAGCCACGGGCGCCGTCG
CCTCGCCCATCGCGAGCGACCTCGGGAAGGCCGCGCGCTCCGTCGGGCTCGGGCTCCCCGCGCTGCCGCCGCTGCCCGGC
CTCGCGTCCCACGGCCAGCCCCGCGTCGCGTCCTTCTGTGAGTGTGGCTCTGAGAACTTGCGCG----TGCAGCGGCATG
GGACGTGGATCTAAGAAGAGTTGTTTTC-AGGCAAAAGGCTAGCGAGGAACGTGGTGTCAATGGCCGCCGGTGAGCCGGC
GGCGCCGCTGGCCGACAACGCCGAGCTTACCGAGTTCTTCAACGGCTTGAAACAAGAGGTACGTAC----GTGGCACGTT
GGAGTTCATTAGTTGTGGCGCGAGTGACTGACACCTCGTCACGGCGTG--------CAGTGGGACAGGGTGGAGGACAAG
TACGCGGTGACCACGCTTGCCGTCGCCGCCACCCTCGGCATGTGGAGCGCCGGCGGAGTAGTATCGGTACTGAAGACGCT
TACCTCAACTGTTTGTGGAACAAGTTGTTTAAAAAATCACTGAGTTGATGGGGTAGCTGAAGGTGACTTTGGTGTTAACC
TTGCAGGCAATCGACAGGCTCCCCGTGGTTCCAGGTCTCATGGAGGTCGTTGGCATTGGCTACAGCGGGGTAAGAAAGAT
CCACAGCTCAACAGAACCTCGATACCGTGATAACGTTTGCTATTCGCAAAATGCAATGTGCCTAAGATTGATTTTACTGG
TCAATCTGGTCATTAATTTGATCATGCTGTACAAGTCTGCCATTCTTCCATCGCTGCCAATTTTC----TAAGAGTTTCC
CATTTTGATCCGTTCTTCTGAATTTCTAATACATGCAGTGGTTTGCGTACAAGAACCTGCTATTCAAGCCCGACAGGTAT
TGAAACACAGCCTTTGTACCGAACCTGCAAAATGCTCCTATAAGATTCTTTAGATAAGGAGGGCTCCAGGCGCTCAAAGA
ATTTCAATGGATTTTGCAGGAAAGCGTTCTTCGCCAAGGTCAGGAACATTTACGAGGATATAATCAGCGGCTAGACGATG
AAGCACTTGAAGAGGCGCATCCCAATTGAGAGAAGCACAAAGTACTCAAAACGGAGACGTGCAATTACTGTAT----ATC
TGTACTGTATATTTGAGCATAGCATCTAATATAATCCTTACTCAAT-GTATATCTAAATAAGTTGGACATATTGACGCAA
AAAACTTTTGATGTGTTTAGCCACCTTCTCCCAGAATTTTCAAACGGTAATTTTGCCCTTGCCATTAATTGGTTGCATAT
AAAATTAATAGCATGGTCCGTTCCGAAAGATGATTGTTCCGTAATTGTCGGTCGGGCATAGGGATCTATTGCCGCCAACG
CACCCTGCTCCCTGATCTATGTCTACGGTGTGAGGCGTTCCTGTTGATCACGCCATGCACCTCTCTTTCACCCGTTCAAA
TTCAATCCACAAACGTCTTTCGTGTACACTAGCTAGGGCACATGATCATACAACACCGACTCTTCCCTAGGGTTTTTGTG
AGGGGTAGCAGAGCAGGGGATGCATCGAGGATGTCAAAGGCATCATGAAGGGGCTCATGTTATCAGCTAAGGAGAGGAGG
GGAGTGAAGGTAGGGACAACATGCACGGGAAAGAAGATGATGTGGGGGATCCCGACGCCCAGGCAGCGGGCTTACTTTTC
TCAGATCGGTCAACGCATGCTTCGGTGGTAGGGAAAACACTATATGGTGCCCGATCAAGGGGTGGGGATGAAAGGAGCTT
GTAGATAATACCTTTTTATACACTTTCCGACAGGAGTTGGGGTGAAGGAGCGCACTGGAAGAAGGGCCATGGGGGTTTGA
TAAGGAGCTTTTGGTAATGGGGAAATTTGACGCAGATAAAACAGTTGAGGAGTATGACTTCAATATAATTCCGATGTGGA
TTAGGGTCTTCGGTCTGCCTCTCGGATCCATGAACATGCCCACGGGTGAGCTCATTGCGAAAAATTTCGATGAGTTGGTG
GGTGCGGATGTTTGACCATATGGTACATTGATAGATAAA
>chr1A_726
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-----TAAACACCAGAAACTCCCGATACCGCAGACGGAAACATCCAGGCCATACAGAGCCCACCCCAAACCCCATCTTAT
CGTTCTTCCGCGCGCAATCGTGTGGCGCCCATCTCACGCATCCCCACTTTATCTTTGCGCGCCTGAACCCGGCCG-TCCC
TAACCTCCCGCAGGACGCCGTCCCGACGACCTCGCGGTCGTTATTAGCATCCGCCCAACGCGCTTAACGCGCAAGTGGTG
GTGGTGGTGAGGCGTACACTGACCGAAGGCATCGATCTCCATGGCCCCGACCGTCGCCTCCCCAGCCACGGGCGCCGTCC
CCTCGCCGATCGCGAGCGACCTCGGGAAGGCCGCGCGCTCCGTCGGGCTCGGGCTCCCCGCGCTGCCGCCGCTGCCCGGC
CTCGCGTCCCACGGCCAGCCCCGCGTCGCCTCCTTCTGTGAGTGTGGCTTTGAGAACTTGCGCGTGCGTGCAGCGGCATG
GGGCGTGGATCTAAGAAGAGTTGTTTTCCAGGTAAAAGGCTCGCGAGGAACGTGGTGTCAATGGCCGCCGGTGAGCCGGC
CGCGCCGCTGGCCGACAACGCCGAGCTTACAGAGTTCTTCAACGGCTTGAAACAAGAGGTACGTAC----GTGGCACGTT
GGAGTTCATTAGTTATGGAGCGAGTGACTGACACCTAGTTGCGCGGTTGCGCCGCACAGTGGGACAGAGTGGAGGACAAG
TACGCGGTGACCACGCTCGCCGTCGCCGCCACGCTCGGCATGTGGAGCGCCGGCGGAGTAGTATCGGTACTGAAGACGCT
TACCTCAACTGTCTGTCGAACAAGTTGTTTAAAAAATCACCGAGTTGATGGGGTAGCTGAAGGTGATTTTGGTGTTAACC
TTGCAGGCAATCGACAGGCTCCCCGTGGTTCCAGGTCTCATGGAGGTCGTTGGCATTGGTTACAGCGGGGTAAGAAAGAT
CCACAGCTCAACAGAACCT---TACCGTGATAACTTTTGCTATTCGCAAACTGCAACGTGCCTAAGATTGAATTTACTGG
TCAATCTGGTCATTAATTTGATCATGCTGTACAAGTCTGCCATTCTTCCATCGCTGTCAATTTTC----TAAGAGTTTCC
CATTTTGATCCGTTCTTCTGAATTTCTAATACATGCAGTGGTTTGCGTACAAGAACCTGCTATTCAAGCCCGACAGGTAT
TGAAACACAGCCTTTGTACCGAACCTGCAAAATGCTACTATAAGATTCTT-AGATAAGGAGGGCTCTAGTCGTTCAAACA
ATTTCAATGGATTTTGCAGGAAAGCGTTCTTCGCTAAGGTCAGGAACATTTACGAGGATATAATCAGCGGCTAGACGATG
AAGCACTTGAAAAGGTGCATCCCAGTTGAGAGAAGCACAAAGTACTCAAAACGGAGACGTGCAATTACTGTAT----ATC
TGTACTATATATTTGAGCATAGCATCTAATATAATCCTTACTCAATTGTATATCTAAATAAGTTGGACATATTGACGCAA
AAAACTTTTGATGTGTTTAGCCACCATCTCCCAGAATTTTCAAA-GGTAATTTTGCCCTTGCCATTAATTGGTTGCATAT
AAAATTAATAGCACGGTCCGTTCCGAAAGATGATTGT-----------CGGTCGGACATAGGGTTCTATTGCCGCCAGCG
CACCCTGCTCCCTGATCTATGTCTACGATGTGAGGCGTTCCTGTTGATCACGCCACGCACCTCTCTTTCACCCGTTCAAA
TCCAATCCACAAACGTCTTTCGTGTACACTAGCTAGGGCACACGATCATACAACAACTACTCTTCCCTAGGGTTTTTGTG
AGGGGTAACAGAGCAGGGGATGCATCGAGGATGTCAAAGGCATGATGAAGGGGCTCATGTTATCAGCTAGGGAGAGGAGG
GGAGTGAAGGTAGGGACAACATACACGGGGAAGGAGATGATGTTGGGGATCCCGATGCCCAGGCAGCGGGCATACTTTTC
TCGGATCGGCCAGCGCATGCTTCGGTGGTAGGGCAAACACTATATGGTGT-CGATCAAGGGGTAGAGATGAAAGGAGCTT
GTAGATAATATCTTTTTATACACTTTTCGGCAGGAGTTGGGGTGAAGGAGCGCACTGGAAGAAGGGCCATGGGGGTTTGA
TAAGGAGCTTTTGGTAATGGAGAAATTTGACGCGGATAAGACAATTGAGGAGTATGACTTCAATATAATTCCGATGTGGA
TTAGGGTCTTGGGTCTGCCTCTCGGATCCATGAACATGACCACGGGTGAGCTCATTGCGCAAAATTTCGATGAGTTGGTG
GCTGTGGATGTTTGACCATATGGTACATTGATAGATAAA
>chr1B_726
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-----TAAACACCAGAAACTCCAGATACCGCAGACGGAAACATCCAGGCCATACAGAGCCCACCCCAAACCCCATCTTAT
CGTTCTTCCGCGCGCAATCGTGTGGCGCCCATC-CACGCATCCCCACTTTATCTTTGCGCGCCTGAGCCCGGCCGCTCCC
TAACCTCCCGCAGGACGCCGTCCCAACAACCTCGCGGCCGTTATTAGCCTCTGACCAACGCGCTTAACGCGCAAGTGGTG
GTGGTGGTGAGGCGTACACTGACCGAAGACATCGATATCCATGGCCCCGACCGTCATCTCCCCAGCCACGGGCGCCGTCG
CCTCGCCCATCGCGAGCGACCTCGGGAAGGCCGCGCGCTCCGTCGGACTCGGGCTCCCCGCGCTGCCGCCGCTGCCCGGC
CTCGCATCCCACGGCCAGCCCCGCGTCGCGTCCTTTTGTGAGTGTGGCTTTGAGAACTTGCGCGTGC----AGCGGCATG
GGACGTGGATCTAAGAAGAGTTGTTTTCCAGGCAAAAGGCTCGCGAGGAACGTGGTGTCAATGGCCGCCGGTGAGCCGGC
CGCGCCGCTGGCCGACAACGCCGAGCTTACCGAGTTCTTCAACTCCTTGAAACAAGAGGTACGTACATATGTGGCACATT
GGAGTTCATTGGTTGTGGCGCGAGTGACTGACACCTCGTCGCGGTGCG--------CAGTGGGACAGGGTGGAGGACAAG
TACGCGGTGACCACGCTCGCCGTCGCCGCCACGCTCGGCATGTGGAGCGCCGGCGGAGTAGTATCGGTACTGAAGACGCT
TACCTCAACTGTTTGTGGAACAAGTTGTTTAAAAAATCACTGAGTTGATGGGGTAGCTGAAGGTGATTTTGGTGTTGACC
TTGCAGGCAATCGACAGGCTCCCCGTGGTTCCAGGTCTCATGGAGGTCGTTGGCATTGGCTACAGCGGGGTAAGAAAGAT
CCACAGCTCAACAGAACCTCGATACCGTGATAACGTTTGCTATTCGCAAACTGCAACGTGCCTAAGATTGATTTTACTGG
TTAATGTGGTCATCAATTTGATCATGCTGTACAAGTCTGCCATTCTTCCATCGCTGCCAATTTTCTAAGTAAGAGTTTCC
CTTTTTGATCCGTTCTTCTGAATTTCTAATGCATGCAGTGGTTTGCGTACAAGAACCTGCTATTCAAGCCCGACAGGTAT
TGAAACACAGCCTTTGTACCGAACCTGCAAAATGCTACAATAAGATTCTT-AGATAAGGAGGGCTCCAGGCGTTCAAACA
ATTTTAATGGATTTTGCAGGAAAGCGTTCTTCGCTAAGGTCAGGAACATTTACGAGGATATAATCAGCGGCTAGACGATG
AAGCACTTGAAGAGGCACATCCCAATTGAGAGAAGCACAAAGTACTCAAAACGGAGACGTGCAATTACTGTATATCAATC
TGTACTATATATTTGAGCATAGCATCTAATATAATCCTTACTAAA-TGTACATCTAAATAAGTTGGACATATTGACGCAA
AAAACTTTTGATGTCTTTAGCCACCATGTGCCAGAATGTTCAAA-GGTAATTTTGCCCTTGCCAATAACTGGTTGC--AT
AAAATTAATAGCACGGTCCGTTCCGAAAGATGATTGTTTCGTAATTGTCGGTTGGGCATAGGGTTCTATTGCGGCCAGCG
CACCCTGCTCCTTCATCTATGTCTAAGGTGTGGGGCGTTCCTGTTGATCACGCCATGTACCTCTCTTTCACCCGTTCAAA
TCCAATCCACAAACGTCTTTCGTGTACACTAGCTAGGGCACACAATCATACAACACCGACTCTTCCCTAGGGTTTTTGTG
AGGGGTGGCAGAGCAGGGGATGCATCGAGGATGTCAAAGGCATGATGAAGGGGCTCATGTTATCAGCTACGGAGAGGAGG
GGAGTGAATGTAGGGACAACATACACGGGGAAGGAGATGATGTGGGGGATCCCAACGCCCAGGCAGCGGGCAAACTTTTC
TCGGATCAGCCAACGCATGGTTCGGTGGTAGGGCAAATACTATATGGTGCCCGATCAAGGGGTAGAGATGAAAGGAGCTT
GTAGATAATATCTTTTTATACACTTCACGGCAGGAGTTGGTGTGAAGGAGCGCACCGGAAGAAGGGCCATGGGGGTTTCA
TAAGGAGCTTTTGGTAATGGAGAAATTTGACGCGGATAAGACAGTTGAGGAGTATGACTTCAATATAATTCCGATGTGGA
TTAGGGTCTTTGATCTGCGTCTCGGATCCATGAACATGCCCACGGGTGAGCTCATTGCGCAAAATTTTGATGAGTTGGTG
GGTGCGGTTGTCTGACCATGTGGTACATTGATAGATAAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS---------------------------S-----------------------------------------------
---------------------------------S-----------------------------SS---------------
-------------------------S--------S----------------S---S-------------S----------
----S---------------------------------------------------------------------------
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-------------------------------------------------S------------------------------
-----------------------------------------S--------------------------------------
S-------------------------------------------------------------------------------
----------------------------------------S---S-----------------------------------
-----------------S--------------S-----------------------------------------------
------------------------------------------------------------------S-------------
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--------------------------------------------------S-----S-----------------------
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------------------------------------S-------------S---------------------S-----S-
----------------------------------S---------------------------------------------
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------S-------------------------------------------------------------------------
-------------------------S------------------S-----------------------------------
-------------S------------------------S------------------------S-------------S--
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-S----------------------------------------S-------------------------------------
-------------------------------------------S-------------------------S----------
----------------------S------S---S-------------------------------------S--------
--S------S-----------------------S-----------------------------S-S--------------
----------S---------------S--S--------------------------------------------------
--------------------S------------S-----S----------------------------------------
----------S------------------------------------------------S--------------------
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>forward_438
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------------------CCAACAATCCGCCAAACCAG------------------------------------------
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>reverse_2285
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--------------------------------------------CGGTAATTTTGCCCTTGCCA----------------
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