Multiple sequence alignment - TraesCS1D01G195000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G195000 | chr1D | 100.000 | 4707 | 0 | 0 | 1 | 4707 | 273810664 | 273815370 | 0.000000e+00 | 8693 |
1 | TraesCS1D01G195000 | chr1A | 93.527 | 1514 | 66 | 19 | 3210 | 4707 | 345785982 | 345787479 | 0.000000e+00 | 2224 |
2 | TraesCS1D01G195000 | chr1A | 88.395 | 1508 | 122 | 40 | 1708 | 3184 | 345784372 | 345785857 | 0.000000e+00 | 1766 |
3 | TraesCS1D01G195000 | chr1A | 91.624 | 788 | 44 | 10 | 584 | 1351 | 345783267 | 345784052 | 0.000000e+00 | 1070 |
4 | TraesCS1D01G195000 | chr1A | 89.454 | 531 | 34 | 9 | 9 | 518 | 345782620 | 345783149 | 0.000000e+00 | 651 |
5 | TraesCS1D01G195000 | chr1B | 88.801 | 1509 | 90 | 39 | 3205 | 4682 | 373143057 | 373144517 | 0.000000e+00 | 1777 |
6 | TraesCS1D01G195000 | chr1B | 88.954 | 1358 | 101 | 31 | 1780 | 3103 | 373141660 | 373143002 | 0.000000e+00 | 1631 |
7 | TraesCS1D01G195000 | chr1B | 87.141 | 1252 | 64 | 43 | 463 | 1711 | 373140400 | 373141557 | 0.000000e+00 | 1330 |
8 | TraesCS1D01G195000 | chr1B | 94.971 | 517 | 21 | 3 | 3 | 514 | 373139882 | 373140398 | 0.000000e+00 | 806 |
9 | TraesCS1D01G195000 | chr1B | 80.769 | 182 | 19 | 6 | 120 | 285 | 338994466 | 338994647 | 1.370000e-25 | 128 |
10 | TraesCS1D01G195000 | chr7D | 82.022 | 178 | 17 | 7 | 123 | 285 | 307073218 | 307073041 | 2.280000e-28 | 137 |
11 | TraesCS1D01G195000 | chr4D | 81.768 | 181 | 18 | 7 | 120 | 285 | 123569423 | 123569603 | 2.280000e-28 | 137 |
12 | TraesCS1D01G195000 | chr4D | 81.215 | 181 | 19 | 7 | 120 | 285 | 123358481 | 123358661 | 1.060000e-26 | 132 |
13 | TraesCS1D01G195000 | chr3B | 82.022 | 178 | 17 | 7 | 123 | 285 | 575693550 | 575693373 | 2.280000e-28 | 137 |
14 | TraesCS1D01G195000 | chr3D | 81.818 | 176 | 17 | 7 | 125 | 285 | 202602790 | 202602965 | 2.950000e-27 | 134 |
15 | TraesCS1D01G195000 | chr4B | 80.899 | 178 | 19 | 7 | 123 | 285 | 209158733 | 209158556 | 4.940000e-25 | 126 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1D01G195000 | chr1D | 273810664 | 273815370 | 4706 | False | 8693.00 | 8693 | 100.00000 | 1 | 4707 | 1 | chr1D.!!$F1 | 4706 |
1 | TraesCS1D01G195000 | chr1A | 345782620 | 345787479 | 4859 | False | 1427.75 | 2224 | 90.75000 | 9 | 4707 | 4 | chr1A.!!$F1 | 4698 |
2 | TraesCS1D01G195000 | chr1B | 373139882 | 373144517 | 4635 | False | 1386.00 | 1777 | 89.96675 | 3 | 4682 | 4 | chr1B.!!$F2 | 4679 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
533 | 607 | 1.140589 | CCTAGTCAGGAGCAGCGTG | 59.859 | 63.158 | 0.0 | 0.0 | 45.91 | 5.34 | F |
991 | 1112 | 1.768077 | CCTCTCCCACTCCCATCCC | 60.768 | 68.421 | 0.0 | 0.0 | 0.00 | 3.85 | F |
1373 | 1494 | 0.035458 | CTGTGTCCCTCGCCTTTCTT | 59.965 | 55.000 | 0.0 | 0.0 | 0.00 | 2.52 | F |
3144 | 3394 | 0.104120 | TTCCTATGGCGGTGATGACG | 59.896 | 55.000 | 0.0 | 0.0 | 0.00 | 4.35 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1354 | 1475 | 0.035458 | AAGAAAGGCGAGGGACACAG | 59.965 | 55.0 | 0.0 | 0.0 | 0.00 | 3.66 | R |
2219 | 2442 | 1.279496 | AGTACAGCAAGATCAGGGCA | 58.721 | 50.0 | 0.0 | 0.0 | 0.00 | 5.36 | R |
3340 | 3704 | 0.031314 | AGTATCTCGCCGCTGACATG | 59.969 | 55.0 | 0.0 | 0.0 | 0.00 | 3.21 | R |
4522 | 4920 | 0.320374 | CAGTCAGGTGGCGTTCCTAA | 59.680 | 55.0 | 0.0 | 0.0 | 33.54 | 2.69 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
31 | 32 | 3.754850 | TCTCGTGACGATGACCTCTTTTA | 59.245 | 43.478 | 8.60 | 0.00 | 34.61 | 1.52 |
43 | 44 | 8.715998 | CGATGACCTCTTTTAGATGAATTATGG | 58.284 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
96 | 105 | 7.113965 | CCTTTGATATGTATTGAAATTGCGAGC | 59.886 | 37.037 | 0.00 | 0.00 | 0.00 | 5.03 |
250 | 261 | 9.942850 | CCTAAATGGGAAACATGAAAAGTAATT | 57.057 | 29.630 | 0.00 | 0.00 | 40.44 | 1.40 |
533 | 607 | 1.140589 | CCTAGTCAGGAGCAGCGTG | 59.859 | 63.158 | 0.00 | 0.00 | 45.91 | 5.34 |
539 | 613 | 2.163390 | CAGGAGCAGCGTGACATCG | 61.163 | 63.158 | 0.00 | 0.00 | 34.35 | 3.84 |
572 | 646 | 7.787084 | ACTTTTACGGAGTTACGTTTTACATC | 58.213 | 34.615 | 0.00 | 0.00 | 46.25 | 3.06 |
573 | 647 | 6.704512 | TTTACGGAGTTACGTTTTACATCC | 57.295 | 37.500 | 0.00 | 0.00 | 46.25 | 3.51 |
574 | 648 | 3.588955 | ACGGAGTTACGTTTTACATCCC | 58.411 | 45.455 | 0.00 | 0.00 | 46.25 | 3.85 |
575 | 649 | 2.931969 | CGGAGTTACGTTTTACATCCCC | 59.068 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
620 | 720 | 4.943705 | TGAAATTCGGAATGAAGGAGAAGG | 59.056 | 41.667 | 3.59 | 0.00 | 40.65 | 3.46 |
621 | 721 | 3.567478 | ATTCGGAATGAAGGAGAAGGG | 57.433 | 47.619 | 1.68 | 0.00 | 40.65 | 3.95 |
622 | 722 | 1.952621 | TCGGAATGAAGGAGAAGGGT | 58.047 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
623 | 723 | 1.831736 | TCGGAATGAAGGAGAAGGGTC | 59.168 | 52.381 | 0.00 | 0.00 | 0.00 | 4.46 |
624 | 724 | 1.834263 | CGGAATGAAGGAGAAGGGTCT | 59.166 | 52.381 | 0.00 | 0.00 | 36.55 | 3.85 |
625 | 725 | 2.419297 | CGGAATGAAGGAGAAGGGTCTG | 60.419 | 54.545 | 0.00 | 0.00 | 32.80 | 3.51 |
626 | 726 | 2.573915 | GGAATGAAGGAGAAGGGTCTGT | 59.426 | 50.000 | 0.00 | 0.00 | 32.80 | 3.41 |
627 | 727 | 3.775316 | GGAATGAAGGAGAAGGGTCTGTA | 59.225 | 47.826 | 0.00 | 0.00 | 32.80 | 2.74 |
628 | 728 | 4.141824 | GGAATGAAGGAGAAGGGTCTGTAG | 60.142 | 50.000 | 0.00 | 0.00 | 32.80 | 2.74 |
629 | 729 | 2.821437 | TGAAGGAGAAGGGTCTGTAGG | 58.179 | 52.381 | 0.00 | 0.00 | 32.80 | 3.18 |
672 | 773 | 5.823045 | CCATAAATTGTACCCCTCTGAGTTC | 59.177 | 44.000 | 3.66 | 0.00 | 0.00 | 3.01 |
700 | 801 | 4.708177 | AGAGTTGCAGCTTTGAACTAAGA | 58.292 | 39.130 | 3.97 | 0.00 | 30.01 | 2.10 |
720 | 821 | 8.462016 | ACTAAGATCCAAAATAAATGTCACAGC | 58.538 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
748 | 865 | 9.529325 | TTGAACTAAGATTCGGAGTACATATTG | 57.471 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
870 | 988 | 6.870971 | ACATAAACTTGCTTCCGTTTTCTA | 57.129 | 33.333 | 0.00 | 0.00 | 35.25 | 2.10 |
991 | 1112 | 1.768077 | CCTCTCCCACTCCCATCCC | 60.768 | 68.421 | 0.00 | 0.00 | 0.00 | 3.85 |
1354 | 1475 | 3.434319 | CCATGGTGCGCACACTCC | 61.434 | 66.667 | 38.60 | 23.92 | 46.57 | 3.85 |
1355 | 1476 | 2.359107 | CATGGTGCGCACACTCCT | 60.359 | 61.111 | 38.60 | 16.92 | 46.57 | 3.69 |
1356 | 1477 | 2.359107 | ATGGTGCGCACACTCCTG | 60.359 | 61.111 | 38.60 | 0.00 | 46.57 | 3.86 |
1366 | 1487 | 2.262915 | CACTCCTGTGTCCCTCGC | 59.737 | 66.667 | 0.00 | 0.00 | 39.24 | 5.03 |
1367 | 1488 | 2.997897 | ACTCCTGTGTCCCTCGCC | 60.998 | 66.667 | 0.00 | 0.00 | 0.00 | 5.54 |
1368 | 1489 | 2.681778 | CTCCTGTGTCCCTCGCCT | 60.682 | 66.667 | 0.00 | 0.00 | 0.00 | 5.52 |
1369 | 1490 | 2.203788 | TCCTGTGTCCCTCGCCTT | 60.204 | 61.111 | 0.00 | 0.00 | 0.00 | 4.35 |
1370 | 1491 | 1.831652 | CTCCTGTGTCCCTCGCCTTT | 61.832 | 60.000 | 0.00 | 0.00 | 0.00 | 3.11 |
1371 | 1492 | 1.376037 | CCTGTGTCCCTCGCCTTTC | 60.376 | 63.158 | 0.00 | 0.00 | 0.00 | 2.62 |
1372 | 1493 | 1.674057 | CTGTGTCCCTCGCCTTTCT | 59.326 | 57.895 | 0.00 | 0.00 | 0.00 | 2.52 |
1373 | 1494 | 0.035458 | CTGTGTCCCTCGCCTTTCTT | 59.965 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1374 | 1495 | 0.472471 | TGTGTCCCTCGCCTTTCTTT | 59.528 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1375 | 1496 | 1.157585 | GTGTCCCTCGCCTTTCTTTC | 58.842 | 55.000 | 0.00 | 0.00 | 0.00 | 2.62 |
1376 | 1497 | 1.056660 | TGTCCCTCGCCTTTCTTTCT | 58.943 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1377 | 1498 | 1.002087 | TGTCCCTCGCCTTTCTTTCTC | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
1378 | 1499 | 1.002087 | GTCCCTCGCCTTTCTTTCTCA | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
1379 | 1500 | 1.002087 | TCCCTCGCCTTTCTTTCTCAC | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
1380 | 1501 | 1.002544 | CCCTCGCCTTTCTTTCTCACT | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
1381 | 1502 | 2.551071 | CCCTCGCCTTTCTTTCTCACTT | 60.551 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1382 | 1503 | 3.142174 | CCTCGCCTTTCTTTCTCACTTT | 58.858 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
1383 | 1504 | 3.058639 | CCTCGCCTTTCTTTCTCACTTTG | 60.059 | 47.826 | 0.00 | 0.00 | 0.00 | 2.77 |
1384 | 1505 | 3.804036 | TCGCCTTTCTTTCTCACTTTGA | 58.196 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
1386 | 1507 | 5.547465 | TCGCCTTTCTTTCTCACTTTGATA | 58.453 | 37.500 | 0.00 | 0.00 | 0.00 | 2.15 |
1388 | 1509 | 5.390991 | CGCCTTTCTTTCTCACTTTGATACC | 60.391 | 44.000 | 0.00 | 0.00 | 0.00 | 2.73 |
1398 | 1519 | 7.048629 | TCTCACTTTGATACCAATTTGCAAA | 57.951 | 32.000 | 15.44 | 15.44 | 31.46 | 3.68 |
1400 | 1521 | 5.689514 | TCACTTTGATACCAATTTGCAAACG | 59.310 | 36.000 | 15.41 | 8.74 | 31.46 | 3.60 |
1402 | 1523 | 6.199908 | CACTTTGATACCAATTTGCAAACGAA | 59.800 | 34.615 | 15.41 | 5.22 | 31.46 | 3.85 |
1412 | 1533 | 3.332761 | TTGCAAACGAACAGTAGCTTG | 57.667 | 42.857 | 0.00 | 0.00 | 35.72 | 4.01 |
1415 | 1536 | 3.242608 | TGCAAACGAACAGTAGCTTGAAC | 60.243 | 43.478 | 0.00 | 0.00 | 35.72 | 3.18 |
1416 | 1537 | 3.242608 | GCAAACGAACAGTAGCTTGAACA | 60.243 | 43.478 | 0.00 | 0.00 | 33.07 | 3.18 |
1417 | 1538 | 4.554723 | GCAAACGAACAGTAGCTTGAACAT | 60.555 | 41.667 | 0.00 | 0.00 | 33.07 | 2.71 |
1418 | 1539 | 5.333798 | GCAAACGAACAGTAGCTTGAACATA | 60.334 | 40.000 | 0.00 | 0.00 | 33.07 | 2.29 |
1419 | 1540 | 6.655062 | CAAACGAACAGTAGCTTGAACATAA | 58.345 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
1420 | 1541 | 6.467723 | AACGAACAGTAGCTTGAACATAAG | 57.532 | 37.500 | 0.00 | 0.00 | 0.00 | 1.73 |
1423 | 1544 | 6.704493 | ACGAACAGTAGCTTGAACATAAGAAA | 59.296 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
1424 | 1545 | 7.010023 | CGAACAGTAGCTTGAACATAAGAAAC | 58.990 | 38.462 | 0.00 | 0.00 | 0.00 | 2.78 |
1426 | 1547 | 7.426929 | ACAGTAGCTTGAACATAAGAAACTG | 57.573 | 36.000 | 0.00 | 14.01 | 42.03 | 3.16 |
1427 | 1548 | 6.428159 | ACAGTAGCTTGAACATAAGAAACTGG | 59.572 | 38.462 | 17.26 | 6.88 | 41.39 | 4.00 |
1428 | 1549 | 6.650807 | CAGTAGCTTGAACATAAGAAACTGGA | 59.349 | 38.462 | 0.00 | 0.00 | 37.79 | 3.86 |
1429 | 1550 | 7.173218 | CAGTAGCTTGAACATAAGAAACTGGAA | 59.827 | 37.037 | 0.00 | 0.00 | 37.79 | 3.53 |
1430 | 1551 | 6.959639 | AGCTTGAACATAAGAAACTGGAAA | 57.040 | 33.333 | 0.00 | 0.00 | 0.00 | 3.13 |
1431 | 1552 | 6.739112 | AGCTTGAACATAAGAAACTGGAAAC | 58.261 | 36.000 | 0.00 | 0.00 | 0.00 | 2.78 |
1432 | 1553 | 6.547510 | AGCTTGAACATAAGAAACTGGAAACT | 59.452 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
1433 | 1554 | 7.068716 | AGCTTGAACATAAGAAACTGGAAACTT | 59.931 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
1434 | 1555 | 7.379797 | GCTTGAACATAAGAAACTGGAAACTTC | 59.620 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
1461 | 1582 | 5.864418 | ATAGAAACGTAGGGCATTGACTA | 57.136 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
1476 | 1597 | 5.451242 | GCATTGACTAGGTTAGGACTCTGAG | 60.451 | 48.000 | 2.45 | 2.45 | 0.00 | 3.35 |
1479 | 1600 | 5.254901 | TGACTAGGTTAGGACTCTGAGAAC | 58.745 | 45.833 | 12.44 | 5.11 | 0.00 | 3.01 |
1494 | 1615 | 4.044336 | TGAGAACATTTTGGTGCTGTTG | 57.956 | 40.909 | 0.00 | 0.00 | 33.46 | 3.33 |
1498 | 1619 | 6.160576 | AGAACATTTTGGTGCTGTTGTTAT | 57.839 | 33.333 | 0.00 | 0.00 | 33.46 | 1.89 |
1502 | 1623 | 6.810911 | ACATTTTGGTGCTGTTGTTATTGTA | 58.189 | 32.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1504 | 1625 | 7.437862 | ACATTTTGGTGCTGTTGTTATTGTAAG | 59.562 | 33.333 | 0.00 | 0.00 | 0.00 | 2.34 |
1510 | 1631 | 6.801862 | GGTGCTGTTGTTATTGTAAGTGATTC | 59.198 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
1525 | 1646 | 6.833342 | AAGTGATTCAACATTTCAACTTGC | 57.167 | 33.333 | 0.00 | 0.00 | 0.00 | 4.01 |
1541 | 1662 | 1.717645 | CTTGCGCAAGTTTGAAGATGC | 59.282 | 47.619 | 36.23 | 0.00 | 41.68 | 3.91 |
1542 | 1663 | 0.953727 | TGCGCAAGTTTGAAGATGCT | 59.046 | 45.000 | 8.16 | 0.00 | 36.67 | 3.79 |
1543 | 1664 | 1.069022 | TGCGCAAGTTTGAAGATGCTC | 60.069 | 47.619 | 8.16 | 0.00 | 36.67 | 4.26 |
1544 | 1665 | 1.069022 | GCGCAAGTTTGAAGATGCTCA | 60.069 | 47.619 | 0.30 | 0.00 | 36.67 | 4.26 |
1545 | 1666 | 2.578495 | CGCAAGTTTGAAGATGCTCAC | 58.422 | 47.619 | 0.00 | 0.00 | 36.67 | 3.51 |
1546 | 1667 | 2.225019 | CGCAAGTTTGAAGATGCTCACT | 59.775 | 45.455 | 0.00 | 0.00 | 36.67 | 3.41 |
1547 | 1668 | 3.433274 | CGCAAGTTTGAAGATGCTCACTA | 59.567 | 43.478 | 0.00 | 0.00 | 36.67 | 2.74 |
1548 | 1669 | 4.435253 | CGCAAGTTTGAAGATGCTCACTAG | 60.435 | 45.833 | 0.00 | 0.00 | 36.67 | 2.57 |
1555 | 1676 | 8.030106 | AGTTTGAAGATGCTCACTAGTTACTAC | 58.970 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
1573 | 1694 | 0.541392 | ACTGACCTGTGTGTGCTCAA | 59.459 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1574 | 1695 | 0.940126 | CTGACCTGTGTGTGCTCAAC | 59.060 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1575 | 1696 | 0.809636 | TGACCTGTGTGTGCTCAACG | 60.810 | 55.000 | 0.00 | 0.00 | 0.00 | 4.10 |
1595 | 1716 | 1.394917 | GCGTGAGTGTTTCTGCCTATG | 59.605 | 52.381 | 0.00 | 0.00 | 0.00 | 2.23 |
1596 | 1717 | 2.688507 | CGTGAGTGTTTCTGCCTATGT | 58.311 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
1597 | 1718 | 3.067106 | CGTGAGTGTTTCTGCCTATGTT | 58.933 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
1622 | 1743 | 0.591236 | CGGTTCCAAACGTGCAACTG | 60.591 | 55.000 | 0.00 | 0.00 | 31.75 | 3.16 |
1625 | 1746 | 0.736053 | TTCCAAACGTGCAACTGACC | 59.264 | 50.000 | 0.00 | 0.00 | 31.75 | 4.02 |
1638 | 1759 | 3.803715 | GCAACTGACCATCACTACACTGT | 60.804 | 47.826 | 0.00 | 0.00 | 0.00 | 3.55 |
1643 | 1764 | 6.166279 | ACTGACCATCACTACACTGTATTTG | 58.834 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1669 | 1790 | 9.623000 | GTACTATATTGTTCCCTGTAATTGGTT | 57.377 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
1678 | 1799 | 9.198475 | TGTTCCCTGTAATTGGTTAAGTAAAAA | 57.802 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
1681 | 1802 | 9.070179 | TCCCTGTAATTGGTTAAGTAAAAAGTC | 57.930 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
1685 | 1806 | 9.934190 | TGTAATTGGTTAAGTAAAAAGTCGAAC | 57.066 | 29.630 | 0.00 | 0.00 | 0.00 | 3.95 |
1691 | 1812 | 7.550196 | TGGTTAAGTAAAAAGTCGAACTGAAGT | 59.450 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
1694 | 1815 | 6.980051 | AGTAAAAAGTCGAACTGAAGTTGT | 57.020 | 33.333 | 0.00 | 0.00 | 38.56 | 3.32 |
1696 | 1817 | 7.241376 | AGTAAAAAGTCGAACTGAAGTTGTTG | 58.759 | 34.615 | 0.00 | 0.00 | 38.56 | 3.33 |
1711 | 1832 | 3.006110 | AGTTGTTGTCCTGATGCCAAATG | 59.994 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
1713 | 1834 | 1.895131 | GTTGTCCTGATGCCAAATGGT | 59.105 | 47.619 | 0.71 | 0.00 | 37.57 | 3.55 |
1714 | 1835 | 1.548081 | TGTCCTGATGCCAAATGGTG | 58.452 | 50.000 | 0.71 | 0.00 | 37.57 | 4.17 |
1715 | 1836 | 0.174162 | GTCCTGATGCCAAATGGTGC | 59.826 | 55.000 | 0.71 | 0.00 | 37.57 | 5.01 |
1716 | 1837 | 0.971959 | TCCTGATGCCAAATGGTGCC | 60.972 | 55.000 | 0.71 | 0.00 | 37.57 | 5.01 |
1718 | 1839 | 0.174845 | CTGATGCCAAATGGTGCCAG | 59.825 | 55.000 | 0.71 | 2.66 | 37.57 | 4.85 |
1719 | 1840 | 0.542467 | TGATGCCAAATGGTGCCAGT | 60.542 | 50.000 | 0.71 | 0.00 | 37.57 | 4.00 |
1720 | 1841 | 1.272369 | TGATGCCAAATGGTGCCAGTA | 60.272 | 47.619 | 0.71 | 0.00 | 37.57 | 2.74 |
1721 | 1842 | 1.824230 | GATGCCAAATGGTGCCAGTAA | 59.176 | 47.619 | 0.71 | 0.00 | 37.57 | 2.24 |
1736 | 1938 | 0.474184 | AGTAAGCTGTGGTGGCTGTT | 59.526 | 50.000 | 0.00 | 0.00 | 40.19 | 3.16 |
1747 | 1949 | 2.036733 | TGGTGGCTGTTACTAGTGTCAC | 59.963 | 50.000 | 5.39 | 6.38 | 0.00 | 3.67 |
1748 | 1950 | 2.612221 | GGTGGCTGTTACTAGTGTCACC | 60.612 | 54.545 | 16.30 | 16.30 | 36.97 | 4.02 |
1752 | 1954 | 3.436496 | GCTGTTACTAGTGTCACCGATC | 58.564 | 50.000 | 5.39 | 0.00 | 0.00 | 3.69 |
1754 | 1956 | 3.423749 | TGTTACTAGTGTCACCGATCCA | 58.576 | 45.455 | 5.39 | 0.00 | 0.00 | 3.41 |
1758 | 1960 | 2.690497 | ACTAGTGTCACCGATCCATCTG | 59.310 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1773 | 1975 | 3.684908 | CCATCTGGTGGTTGTATGTTCA | 58.315 | 45.455 | 0.00 | 0.00 | 43.44 | 3.18 |
1792 | 1994 | 6.457355 | TGTTCATGATTATTTGCTGCTTGTT | 58.543 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1793 | 1995 | 6.587226 | TGTTCATGATTATTTGCTGCTTGTTC | 59.413 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
1794 | 1996 | 5.653507 | TCATGATTATTTGCTGCTTGTTCC | 58.346 | 37.500 | 0.00 | 0.00 | 0.00 | 3.62 |
1795 | 1997 | 5.419788 | TCATGATTATTTGCTGCTTGTTCCT | 59.580 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1796 | 1998 | 5.314923 | TGATTATTTGCTGCTTGTTCCTC | 57.685 | 39.130 | 0.00 | 0.00 | 0.00 | 3.71 |
1799 | 2001 | 2.057137 | TTTGCTGCTTGTTCCTCTGT | 57.943 | 45.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1801 | 2003 | 0.469494 | TGCTGCTTGTTCCTCTGTGA | 59.531 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1810 | 2012 | 5.915196 | GCTTGTTCCTCTGTGAAAATACAAC | 59.085 | 40.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1818 | 2020 | 9.567776 | TCCTCTGTGAAAATACAACTTATTTGA | 57.432 | 29.630 | 0.00 | 0.00 | 38.73 | 2.69 |
1850 | 2054 | 5.115480 | GTTTGGTGCCAAATATGTAATGGG | 58.885 | 41.667 | 18.00 | 0.00 | 45.90 | 4.00 |
1855 | 2066 | 3.255395 | TGCCAAATATGTAATGGGCATCG | 59.745 | 43.478 | 0.00 | 0.00 | 45.69 | 3.84 |
1859 | 2070 | 5.652014 | CCAAATATGTAATGGGCATCGGTAT | 59.348 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
1860 | 2071 | 6.404623 | CCAAATATGTAATGGGCATCGGTATG | 60.405 | 42.308 | 0.00 | 0.00 | 36.09 | 2.39 |
1881 | 2100 | 9.454859 | GGTATGCCATAATAAGATTAGCTCTTT | 57.545 | 33.333 | 0.00 | 0.00 | 38.76 | 2.52 |
1906 | 2128 | 5.239525 | GGATCAGTGGTAACTTATGAATGGC | 59.760 | 44.000 | 0.00 | 0.00 | 32.98 | 4.40 |
1945 | 2167 | 0.326264 | ACTTCTCAGGCATGGTGGAC | 59.674 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1964 | 2186 | 3.254657 | GGACGATGAATTCCTCGAGAGAT | 59.745 | 47.826 | 31.29 | 14.44 | 40.84 | 2.75 |
2200 | 2423 | 9.363763 | GGTAGTTTCTACAGGTAAATTCACTAC | 57.636 | 37.037 | 8.78 | 0.00 | 0.00 | 2.73 |
2203 | 2426 | 9.091220 | AGTTTCTACAGGTAAATTCACTACTCT | 57.909 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
2219 | 2442 | 9.778741 | TTCACTACTCTGACAATATTTTCACTT | 57.221 | 29.630 | 0.03 | 0.00 | 0.00 | 3.16 |
2220 | 2443 | 9.208022 | TCACTACTCTGACAATATTTTCACTTG | 57.792 | 33.333 | 0.03 | 0.00 | 0.00 | 3.16 |
2222 | 2445 | 6.259550 | ACTCTGACAATATTTTCACTTGCC | 57.740 | 37.500 | 0.03 | 0.00 | 0.00 | 4.52 |
2232 | 2455 | 1.538047 | TTCACTTGCCCTGATCTTGC | 58.462 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
2245 | 2468 | 4.510711 | CCTGATCTTGCTGTACTATTGCTG | 59.489 | 45.833 | 0.00 | 0.00 | 0.00 | 4.41 |
2255 | 2478 | 5.110814 | TGTACTATTGCTGCCAATAAGGT | 57.889 | 39.130 | 0.00 | 0.82 | 41.88 | 3.50 |
2261 | 2484 | 3.399440 | TGCTGCCAATAAGGTTTTTGG | 57.601 | 42.857 | 7.39 | 7.39 | 44.29 | 3.28 |
2267 | 2490 | 6.672266 | TGCCAATAAGGTTTTTGGACATTA | 57.328 | 33.333 | 14.11 | 0.00 | 44.23 | 1.90 |
2283 | 2506 | 5.355071 | TGGACATTATCTGACATCAAACTGC | 59.645 | 40.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2349 | 2572 | 1.613437 | CAATTCTTGTCCAAGCCGGTT | 59.387 | 47.619 | 1.90 | 0.00 | 38.28 | 4.44 |
2400 | 2623 | 4.350368 | TCTAACAACTCCAGATGCACAA | 57.650 | 40.909 | 0.00 | 0.00 | 0.00 | 3.33 |
2446 | 2669 | 7.175119 | AGGTTAGTTTCTTCACTAATGGCTTTC | 59.825 | 37.037 | 0.00 | 0.00 | 40.55 | 2.62 |
2486 | 2709 | 6.151144 | AGTTGGTAAACTTGTCTGGATTATGC | 59.849 | 38.462 | 0.00 | 0.00 | 44.47 | 3.14 |
2535 | 2758 | 7.311092 | TGATCTTTACTCTTTGGGTACTTCA | 57.689 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2542 | 2765 | 4.409247 | ACTCTTTGGGTACTTCAGAGTTGT | 59.591 | 41.667 | 10.09 | 7.03 | 41.14 | 3.32 |
2543 | 2766 | 4.703897 | TCTTTGGGTACTTCAGAGTTGTG | 58.296 | 43.478 | 0.00 | 0.00 | 37.33 | 3.33 |
2544 | 2767 | 3.485463 | TTGGGTACTTCAGAGTTGTGG | 57.515 | 47.619 | 0.00 | 0.00 | 37.33 | 4.17 |
2545 | 2768 | 2.404559 | TGGGTACTTCAGAGTTGTGGT | 58.595 | 47.619 | 0.00 | 0.00 | 37.33 | 4.16 |
2546 | 2769 | 3.578978 | TGGGTACTTCAGAGTTGTGGTA | 58.421 | 45.455 | 0.00 | 0.00 | 37.33 | 3.25 |
2547 | 2770 | 3.968649 | TGGGTACTTCAGAGTTGTGGTAA | 59.031 | 43.478 | 0.00 | 0.00 | 37.33 | 2.85 |
2574 | 2803 | 5.361857 | CCTTCCTGGAAATGTAGCAATTCAT | 59.638 | 40.000 | 10.86 | 0.00 | 38.35 | 2.57 |
2691 | 2936 | 7.994334 | TGGACAAGTATAGTTTACTTTGTTGGT | 59.006 | 33.333 | 3.51 | 0.00 | 35.76 | 3.67 |
2733 | 2978 | 5.363005 | TCCTGGCACTACCTTATTCTCTAAC | 59.637 | 44.000 | 0.00 | 0.00 | 40.22 | 2.34 |
2740 | 2985 | 4.338379 | ACCTTATTCTCTAACGATGCCC | 57.662 | 45.455 | 0.00 | 0.00 | 0.00 | 5.36 |
2796 | 3041 | 2.622436 | GCTTACGATTCAGACTTGGCT | 58.378 | 47.619 | 0.00 | 0.00 | 0.00 | 4.75 |
2986 | 3231 | 1.304134 | TGAGACTAGCCTCCGTGCA | 60.304 | 57.895 | 3.37 | 0.00 | 32.32 | 4.57 |
2989 | 3234 | 1.139947 | GACTAGCCTCCGTGCAGAC | 59.860 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
3025 | 3271 | 3.081061 | TGGCACTTGCAATTATCTCGTT | 58.919 | 40.909 | 0.00 | 0.00 | 44.36 | 3.85 |
3027 | 3273 | 3.126858 | GGCACTTGCAATTATCTCGTTCA | 59.873 | 43.478 | 0.00 | 0.00 | 44.36 | 3.18 |
3028 | 3274 | 4.337763 | GCACTTGCAATTATCTCGTTCAG | 58.662 | 43.478 | 0.00 | 0.00 | 41.59 | 3.02 |
3029 | 3275 | 4.142816 | GCACTTGCAATTATCTCGTTCAGT | 60.143 | 41.667 | 0.00 | 0.00 | 41.59 | 3.41 |
3031 | 3277 | 5.791974 | CACTTGCAATTATCTCGTTCAGTTG | 59.208 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3037 | 3286 | 2.238942 | ATCTCGTTCAGTTGCACACA | 57.761 | 45.000 | 0.00 | 0.00 | 0.00 | 3.72 |
3056 | 3306 | 5.513141 | CACACACTACAGTCATAAGTCATCG | 59.487 | 44.000 | 0.00 | 0.00 | 0.00 | 3.84 |
3069 | 3319 | 6.316140 | TCATAAGTCATCGTCCATTTCCTTTG | 59.684 | 38.462 | 0.00 | 0.00 | 0.00 | 2.77 |
3072 | 3322 | 4.455877 | AGTCATCGTCCATTTCCTTTGAAC | 59.544 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
3082 | 3332 | 7.228706 | GTCCATTTCCTTTGAACTAACAAGAGA | 59.771 | 37.037 | 0.00 | 0.00 | 0.00 | 3.10 |
3109 | 3359 | 9.243105 | TCCAAGTTATAAATCAGGAAAAAGAGG | 57.757 | 33.333 | 5.01 | 0.00 | 0.00 | 3.69 |
3112 | 3362 | 8.581253 | AGTTATAAATCAGGAAAAAGAGGTGG | 57.419 | 34.615 | 0.00 | 0.00 | 0.00 | 4.61 |
3113 | 3363 | 5.921962 | ATAAATCAGGAAAAAGAGGTGGC | 57.078 | 39.130 | 0.00 | 0.00 | 0.00 | 5.01 |
3117 | 3367 | 3.222603 | TCAGGAAAAAGAGGTGGCTTTC | 58.777 | 45.455 | 0.00 | 0.00 | 37.12 | 2.62 |
3118 | 3368 | 2.297315 | CAGGAAAAAGAGGTGGCTTTCC | 59.703 | 50.000 | 4.59 | 4.59 | 44.76 | 3.13 |
3131 | 3381 | 2.041620 | TGGCTTTCCACTTGCTTCCTAT | 59.958 | 45.455 | 0.00 | 0.00 | 37.47 | 2.57 |
3134 | 3384 | 2.128771 | TTCCACTTGCTTCCTATGGC | 57.871 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3144 | 3394 | 0.104120 | TTCCTATGGCGGTGATGACG | 59.896 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
3147 | 3397 | 1.490693 | CTATGGCGGTGATGACGTGC | 61.491 | 60.000 | 0.00 | 0.00 | 0.00 | 5.34 |
3157 | 3407 | 1.409227 | GATGACGTGCGTCTGCTCTG | 61.409 | 60.000 | 22.54 | 0.00 | 44.80 | 3.35 |
3158 | 3408 | 1.866853 | ATGACGTGCGTCTGCTCTGA | 61.867 | 55.000 | 22.54 | 4.06 | 44.80 | 3.27 |
3162 | 3412 | 0.162507 | CGTGCGTCTGCTCTGAAAAG | 59.837 | 55.000 | 0.00 | 0.00 | 43.34 | 2.27 |
3171 | 3421 | 4.453819 | GTCTGCTCTGAAAAGTGCTACATT | 59.546 | 41.667 | 2.01 | 0.00 | 0.00 | 2.71 |
3184 | 3434 | 4.899457 | AGTGCTACATTAGTGGGCTACATA | 59.101 | 41.667 | 3.15 | 0.00 | 32.19 | 2.29 |
3185 | 3435 | 5.544176 | AGTGCTACATTAGTGGGCTACATAT | 59.456 | 40.000 | 3.15 | 0.00 | 32.19 | 1.78 |
3186 | 3436 | 5.639506 | GTGCTACATTAGTGGGCTACATATG | 59.360 | 44.000 | 3.15 | 8.58 | 32.19 | 1.78 |
3187 | 3437 | 5.178797 | GCTACATTAGTGGGCTACATATGG | 58.821 | 45.833 | 7.80 | 0.00 | 30.86 | 2.74 |
3188 | 3438 | 4.021102 | ACATTAGTGGGCTACATATGGC | 57.979 | 45.455 | 7.80 | 1.33 | 30.86 | 4.40 |
3189 | 3439 | 3.394274 | ACATTAGTGGGCTACATATGGCA | 59.606 | 43.478 | 7.80 | 0.00 | 32.95 | 4.92 |
3190 | 3440 | 4.043310 | ACATTAGTGGGCTACATATGGCAT | 59.957 | 41.667 | 4.88 | 4.88 | 32.95 | 4.40 |
3191 | 3441 | 5.250543 | ACATTAGTGGGCTACATATGGCATA | 59.749 | 40.000 | 10.07 | 10.07 | 32.95 | 3.14 |
3192 | 3442 | 5.834281 | TTAGTGGGCTACATATGGCATAA | 57.166 | 39.130 | 11.86 | 0.00 | 32.95 | 1.90 |
3193 | 3443 | 4.934797 | AGTGGGCTACATATGGCATAAT | 57.065 | 40.909 | 11.86 | 5.62 | 32.95 | 1.28 |
3194 | 3444 | 4.592942 | AGTGGGCTACATATGGCATAATG | 58.407 | 43.478 | 11.86 | 12.22 | 32.95 | 1.90 |
3195 | 3445 | 4.289410 | AGTGGGCTACATATGGCATAATGA | 59.711 | 41.667 | 11.86 | 0.00 | 32.95 | 2.57 |
3196 | 3446 | 5.009631 | GTGGGCTACATATGGCATAATGAA | 58.990 | 41.667 | 11.86 | 0.00 | 32.95 | 2.57 |
3197 | 3447 | 5.009631 | TGGGCTACATATGGCATAATGAAC | 58.990 | 41.667 | 11.86 | 1.78 | 32.95 | 3.18 |
3198 | 3448 | 4.094887 | GGGCTACATATGGCATAATGAACG | 59.905 | 45.833 | 11.86 | 0.06 | 32.95 | 3.95 |
3199 | 3449 | 4.935205 | GGCTACATATGGCATAATGAACGA | 59.065 | 41.667 | 11.86 | 0.00 | 32.95 | 3.85 |
3200 | 3450 | 5.163854 | GGCTACATATGGCATAATGAACGAC | 60.164 | 44.000 | 11.86 | 0.00 | 32.95 | 4.34 |
3201 | 3451 | 5.408299 | GCTACATATGGCATAATGAACGACA | 59.592 | 40.000 | 11.86 | 0.00 | 31.28 | 4.35 |
3202 | 3452 | 6.092670 | GCTACATATGGCATAATGAACGACAT | 59.907 | 38.462 | 11.86 | 0.00 | 34.87 | 3.06 |
3203 | 3453 | 6.486253 | ACATATGGCATAATGAACGACATC | 57.514 | 37.500 | 11.86 | 0.00 | 38.38 | 3.06 |
3298 | 3662 | 3.132646 | ACATATTGTTCGCCAATGCCAAT | 59.867 | 39.130 | 9.55 | 0.00 | 43.63 | 3.16 |
3349 | 3713 | 2.480416 | GGAAGAGAGTACCATGTCAGCG | 60.480 | 54.545 | 0.00 | 0.00 | 0.00 | 5.18 |
3735 | 4101 | 1.352083 | CCCCTCAAGTCAAGTCCTCA | 58.648 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3849 | 4215 | 8.696374 | CCACTCAGACTCAGGTTCTATATAAAA | 58.304 | 37.037 | 0.00 | 0.00 | 0.00 | 1.52 |
3852 | 4218 | 9.703892 | CTCAGACTCAGGTTCTATATAAAATGG | 57.296 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
3874 | 4240 | 0.111253 | AACCAGCACCTCCTTCCTTG | 59.889 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
3878 | 4244 | 0.695347 | AGCACCTCCTTCCTTGGAAG | 59.305 | 55.000 | 19.53 | 19.53 | 35.43 | 3.46 |
3933 | 4299 | 0.178964 | CCCTTCAACTTCAAGCCCCA | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
4031 | 4397 | 1.747355 | GCCTCTGTCACCATTCCATTG | 59.253 | 52.381 | 0.00 | 0.00 | 0.00 | 2.82 |
4067 | 4433 | 3.391296 | ACGGGAAGGATGCTACATACATT | 59.609 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
4074 | 4440 | 7.118390 | GGAAGGATGCTACATACATTGATACAC | 59.882 | 40.741 | 0.00 | 0.00 | 0.00 | 2.90 |
4238 | 4621 | 5.248640 | CGTCAAAGGGGATATGCTTATCAT | 58.751 | 41.667 | 18.36 | 4.32 | 36.68 | 2.45 |
4277 | 4664 | 1.060729 | TCCGACTTTGTTGGATGGGA | 58.939 | 50.000 | 2.73 | 0.00 | 40.82 | 4.37 |
4278 | 4665 | 1.633432 | TCCGACTTTGTTGGATGGGAT | 59.367 | 47.619 | 2.73 | 0.00 | 40.82 | 3.85 |
4280 | 4667 | 2.164219 | CCGACTTTGTTGGATGGGATTG | 59.836 | 50.000 | 0.00 | 0.00 | 39.36 | 2.67 |
4281 | 4668 | 2.164219 | CGACTTTGTTGGATGGGATTGG | 59.836 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4284 | 4671 | 3.246094 | ACTTTGTTGGATGGGATTGGGAT | 60.246 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
4285 | 4672 | 3.488355 | TTGTTGGATGGGATTGGGATT | 57.512 | 42.857 | 0.00 | 0.00 | 0.00 | 3.01 |
4286 | 4673 | 3.030873 | TGTTGGATGGGATTGGGATTC | 57.969 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
4287 | 4674 | 1.956477 | GTTGGATGGGATTGGGATTCG | 59.044 | 52.381 | 0.00 | 0.00 | 0.00 | 3.34 |
4288 | 4675 | 1.517238 | TGGATGGGATTGGGATTCGA | 58.483 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
4289 | 4676 | 2.065007 | TGGATGGGATTGGGATTCGAT | 58.935 | 47.619 | 0.00 | 0.00 | 0.00 | 3.59 |
4303 | 4690 | 0.538516 | TTCGATTGTGGTTGGGTGGG | 60.539 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
4403 | 4792 | 3.938334 | GACCCAGATTCTCTTCTTTCTGC | 59.062 | 47.826 | 0.00 | 0.00 | 35.38 | 4.26 |
4419 | 4811 | 9.979578 | CTTCTTTCTGCTAGCCTATATATATGG | 57.020 | 37.037 | 13.29 | 2.22 | 0.00 | 2.74 |
4545 | 4943 | 1.145803 | GAACGCCACCTGACTGTAAC | 58.854 | 55.000 | 0.00 | 0.00 | 0.00 | 2.50 |
4552 | 4950 | 3.317993 | GCCACCTGACTGTAACATGTTTT | 59.682 | 43.478 | 17.78 | 0.00 | 0.00 | 2.43 |
4557 | 4955 | 6.147821 | CACCTGACTGTAACATGTTTTCCTAG | 59.852 | 42.308 | 17.78 | 10.34 | 0.00 | 3.02 |
4559 | 4957 | 6.934645 | CCTGACTGTAACATGTTTTCCTAGAA | 59.065 | 38.462 | 17.78 | 0.00 | 0.00 | 2.10 |
4586 | 4984 | 2.110967 | CGACCTGCTGAGCCATTGG | 61.111 | 63.158 | 0.23 | 0.00 | 0.00 | 3.16 |
4620 | 5019 | 3.787785 | CGAGAGCTGTAGACTGTAGAGA | 58.212 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
4621 | 5020 | 3.802139 | CGAGAGCTGTAGACTGTAGAGAG | 59.198 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
4623 | 5022 | 5.450826 | CGAGAGCTGTAGACTGTAGAGAGTA | 60.451 | 48.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4624 | 5023 | 5.914033 | AGAGCTGTAGACTGTAGAGAGTAG | 58.086 | 45.833 | 0.00 | 0.00 | 0.00 | 2.57 |
4625 | 5024 | 5.659525 | AGAGCTGTAGACTGTAGAGAGTAGA | 59.340 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
4626 | 5025 | 5.914033 | AGCTGTAGACTGTAGAGAGTAGAG | 58.086 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
4627 | 5026 | 5.424252 | AGCTGTAGACTGTAGAGAGTAGAGT | 59.576 | 44.000 | 0.00 | 0.00 | 0.00 | 3.24 |
4628 | 5027 | 6.608405 | AGCTGTAGACTGTAGAGAGTAGAGTA | 59.392 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
4629 | 5028 | 6.921857 | GCTGTAGACTGTAGAGAGTAGAGTAG | 59.078 | 46.154 | 0.00 | 0.00 | 0.00 | 2.57 |
4645 | 5044 | 4.954875 | AGAGTAGATAGCACCATTTGAGC | 58.045 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
4670 | 5069 | 4.466015 | GCTCCACCCCATGATAAAGAAAAA | 59.534 | 41.667 | 0.00 | 0.00 | 0.00 | 1.94 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 0.319813 | TCGTCACGAGACCTGTACGA | 60.320 | 55.000 | 7.43 | 0.00 | 41.87 | 3.43 |
1 | 2 | 0.725686 | ATCGTCACGAGACCTGTACG | 59.274 | 55.000 | 5.89 | 0.00 | 41.87 | 3.67 |
6 | 7 | 2.181584 | GGTCATCGTCACGAGACCT | 58.818 | 57.895 | 27.80 | 3.73 | 43.59 | 3.85 |
533 | 607 | 3.297461 | CGTAAAAGTCAGTCGTCGATGTC | 59.703 | 47.826 | 4.21 | 0.00 | 0.00 | 3.06 |
539 | 613 | 3.279853 | ACTCCGTAAAAGTCAGTCGTC | 57.720 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
580 | 654 | 4.579384 | AAGTGTGTGCGGGGGTGG | 62.579 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
581 | 655 | 3.286751 | CAAGTGTGTGCGGGGGTG | 61.287 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
582 | 656 | 2.559922 | TTTCAAGTGTGTGCGGGGGT | 62.560 | 55.000 | 0.00 | 0.00 | 0.00 | 4.95 |
583 | 657 | 1.178534 | ATTTCAAGTGTGTGCGGGGG | 61.179 | 55.000 | 0.00 | 0.00 | 0.00 | 5.40 |
584 | 658 | 0.673437 | AATTTCAAGTGTGTGCGGGG | 59.327 | 50.000 | 0.00 | 0.00 | 0.00 | 5.73 |
588 | 678 | 3.347958 | TTCCGAATTTCAAGTGTGTGC | 57.652 | 42.857 | 0.00 | 0.00 | 0.00 | 4.57 |
621 | 721 | 5.586643 | GGATCCAATGAAAAGTCCTACAGAC | 59.413 | 44.000 | 6.95 | 0.00 | 46.71 | 3.51 |
622 | 722 | 5.250543 | TGGATCCAATGAAAAGTCCTACAGA | 59.749 | 40.000 | 13.46 | 0.00 | 0.00 | 3.41 |
623 | 723 | 5.500234 | TGGATCCAATGAAAAGTCCTACAG | 58.500 | 41.667 | 13.46 | 0.00 | 0.00 | 2.74 |
624 | 724 | 5.512942 | TGGATCCAATGAAAAGTCCTACA | 57.487 | 39.130 | 13.46 | 0.00 | 0.00 | 2.74 |
625 | 725 | 5.532779 | GGATGGATCCAATGAAAAGTCCTAC | 59.467 | 44.000 | 20.67 | 0.00 | 46.38 | 3.18 |
626 | 726 | 5.694995 | GGATGGATCCAATGAAAAGTCCTA | 58.305 | 41.667 | 20.67 | 0.00 | 46.38 | 2.94 |
627 | 727 | 4.540715 | GGATGGATCCAATGAAAAGTCCT | 58.459 | 43.478 | 20.67 | 0.00 | 46.38 | 3.85 |
628 | 728 | 4.926140 | GGATGGATCCAATGAAAAGTCC | 57.074 | 45.455 | 20.67 | 14.59 | 46.38 | 3.85 |
680 | 781 | 4.457257 | GGATCTTAGTTCAAAGCTGCAACT | 59.543 | 41.667 | 1.02 | 5.37 | 34.68 | 3.16 |
700 | 801 | 7.669427 | TCAAAGCTGTGACATTTATTTTGGAT | 58.331 | 30.769 | 1.21 | 0.00 | 0.00 | 3.41 |
720 | 821 | 9.751542 | ATATGTACTCCGAATCTTAGTTCAAAG | 57.248 | 33.333 | 0.00 | 0.00 | 0.00 | 2.77 |
870 | 988 | 1.377725 | CACGGCCAGGCTGAGAAAT | 60.378 | 57.895 | 28.29 | 0.00 | 38.46 | 2.17 |
991 | 1112 | 2.203126 | GAGCGCCATTGGAGAGGG | 60.203 | 66.667 | 10.96 | 0.00 | 0.00 | 4.30 |
1181 | 1302 | 3.918220 | CGTCGCTGGCATCTTCGC | 61.918 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
1255 | 1376 | 3.692406 | GACGTCCTCGCACCCCTT | 61.692 | 66.667 | 3.51 | 0.00 | 41.18 | 3.95 |
1354 | 1475 | 0.035458 | AAGAAAGGCGAGGGACACAG | 59.965 | 55.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1355 | 1476 | 0.472471 | AAAGAAAGGCGAGGGACACA | 59.528 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
1356 | 1477 | 1.157585 | GAAAGAAAGGCGAGGGACAC | 58.842 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1358 | 1479 | 1.002087 | TGAGAAAGAAAGGCGAGGGAC | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 4.46 |
1361 | 1482 | 2.464157 | AGTGAGAAAGAAAGGCGAGG | 57.536 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1362 | 1483 | 3.809832 | TCAAAGTGAGAAAGAAAGGCGAG | 59.190 | 43.478 | 0.00 | 0.00 | 0.00 | 5.03 |
1365 | 1486 | 5.473504 | TGGTATCAAAGTGAGAAAGAAAGGC | 59.526 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1366 | 1487 | 7.510549 | TTGGTATCAAAGTGAGAAAGAAAGG | 57.489 | 36.000 | 0.00 | 0.00 | 0.00 | 3.11 |
1367 | 1488 | 9.971922 | AAATTGGTATCAAAGTGAGAAAGAAAG | 57.028 | 29.630 | 0.00 | 0.00 | 36.36 | 2.62 |
1368 | 1489 | 9.748708 | CAAATTGGTATCAAAGTGAGAAAGAAA | 57.251 | 29.630 | 0.00 | 0.00 | 36.36 | 2.52 |
1369 | 1490 | 7.867403 | GCAAATTGGTATCAAAGTGAGAAAGAA | 59.133 | 33.333 | 6.26 | 0.00 | 36.36 | 2.52 |
1370 | 1491 | 7.014134 | TGCAAATTGGTATCAAAGTGAGAAAGA | 59.986 | 33.333 | 6.26 | 0.00 | 36.36 | 2.52 |
1371 | 1492 | 7.147312 | TGCAAATTGGTATCAAAGTGAGAAAG | 58.853 | 34.615 | 6.26 | 0.00 | 36.36 | 2.62 |
1372 | 1493 | 7.048629 | TGCAAATTGGTATCAAAGTGAGAAA | 57.951 | 32.000 | 6.26 | 0.00 | 36.36 | 2.52 |
1373 | 1494 | 6.647334 | TGCAAATTGGTATCAAAGTGAGAA | 57.353 | 33.333 | 6.26 | 0.00 | 36.36 | 2.87 |
1374 | 1495 | 6.647334 | TTGCAAATTGGTATCAAAGTGAGA | 57.353 | 33.333 | 0.00 | 0.00 | 36.36 | 3.27 |
1375 | 1496 | 6.129115 | CGTTTGCAAATTGGTATCAAAGTGAG | 60.129 | 38.462 | 16.21 | 0.00 | 36.36 | 3.51 |
1376 | 1497 | 5.689514 | CGTTTGCAAATTGGTATCAAAGTGA | 59.310 | 36.000 | 16.21 | 0.00 | 36.36 | 3.41 |
1377 | 1498 | 5.689514 | TCGTTTGCAAATTGGTATCAAAGTG | 59.310 | 36.000 | 16.21 | 0.00 | 36.36 | 3.16 |
1378 | 1499 | 5.837437 | TCGTTTGCAAATTGGTATCAAAGT | 58.163 | 33.333 | 16.21 | 0.00 | 36.36 | 2.66 |
1379 | 1500 | 6.199908 | TGTTCGTTTGCAAATTGGTATCAAAG | 59.800 | 34.615 | 16.21 | 0.00 | 36.36 | 2.77 |
1380 | 1501 | 6.042777 | TGTTCGTTTGCAAATTGGTATCAAA | 58.957 | 32.000 | 16.21 | 0.00 | 36.36 | 2.69 |
1381 | 1502 | 5.592054 | TGTTCGTTTGCAAATTGGTATCAA | 58.408 | 33.333 | 16.21 | 0.00 | 37.28 | 2.57 |
1382 | 1503 | 5.188327 | TGTTCGTTTGCAAATTGGTATCA | 57.812 | 34.783 | 16.21 | 6.25 | 0.00 | 2.15 |
1383 | 1504 | 5.219633 | ACTGTTCGTTTGCAAATTGGTATC | 58.780 | 37.500 | 16.21 | 0.00 | 0.00 | 2.24 |
1384 | 1505 | 5.195001 | ACTGTTCGTTTGCAAATTGGTAT | 57.805 | 34.783 | 16.21 | 0.00 | 0.00 | 2.73 |
1386 | 1507 | 3.518634 | ACTGTTCGTTTGCAAATTGGT | 57.481 | 38.095 | 16.21 | 6.30 | 0.00 | 3.67 |
1388 | 1509 | 4.290155 | AGCTACTGTTCGTTTGCAAATTG | 58.710 | 39.130 | 16.21 | 11.34 | 0.00 | 2.32 |
1398 | 1519 | 5.779922 | TCTTATGTTCAAGCTACTGTTCGT | 58.220 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
1400 | 1521 | 8.012241 | CAGTTTCTTATGTTCAAGCTACTGTTC | 58.988 | 37.037 | 0.00 | 0.00 | 34.91 | 3.18 |
1402 | 1523 | 6.428159 | CCAGTTTCTTATGTTCAAGCTACTGT | 59.572 | 38.462 | 0.00 | 0.00 | 36.25 | 3.55 |
1427 | 1548 | 6.128363 | CCCTACGTTTCTATTGTGGAAGTTTC | 60.128 | 42.308 | 0.00 | 0.00 | 0.00 | 2.78 |
1428 | 1549 | 5.704053 | CCCTACGTTTCTATTGTGGAAGTTT | 59.296 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
1429 | 1550 | 5.243207 | CCCTACGTTTCTATTGTGGAAGTT | 58.757 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
1430 | 1551 | 4.828829 | CCCTACGTTTCTATTGTGGAAGT | 58.171 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
1431 | 1552 | 3.621715 | GCCCTACGTTTCTATTGTGGAAG | 59.378 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
1432 | 1553 | 3.008157 | TGCCCTACGTTTCTATTGTGGAA | 59.992 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
1433 | 1554 | 2.568062 | TGCCCTACGTTTCTATTGTGGA | 59.432 | 45.455 | 0.00 | 0.00 | 0.00 | 4.02 |
1434 | 1555 | 2.980568 | TGCCCTACGTTTCTATTGTGG | 58.019 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
1435 | 1556 | 4.634004 | TCAATGCCCTACGTTTCTATTGTG | 59.366 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
1436 | 1557 | 4.634443 | GTCAATGCCCTACGTTTCTATTGT | 59.366 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
1437 | 1558 | 4.876107 | AGTCAATGCCCTACGTTTCTATTG | 59.124 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
1438 | 1559 | 5.099042 | AGTCAATGCCCTACGTTTCTATT | 57.901 | 39.130 | 0.00 | 0.00 | 0.00 | 1.73 |
1439 | 1560 | 4.755266 | AGTCAATGCCCTACGTTTCTAT | 57.245 | 40.909 | 0.00 | 0.00 | 0.00 | 1.98 |
1440 | 1561 | 4.098960 | CCTAGTCAATGCCCTACGTTTCTA | 59.901 | 45.833 | 0.00 | 0.00 | 0.00 | 2.10 |
1441 | 1562 | 3.118738 | CCTAGTCAATGCCCTACGTTTCT | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 2.52 |
1442 | 1563 | 3.195661 | CCTAGTCAATGCCCTACGTTTC | 58.804 | 50.000 | 0.00 | 0.00 | 0.00 | 2.78 |
1443 | 1564 | 2.570302 | ACCTAGTCAATGCCCTACGTTT | 59.430 | 45.455 | 0.00 | 0.00 | 0.00 | 3.60 |
1461 | 1582 | 6.234177 | CAAAATGTTCTCAGAGTCCTAACCT | 58.766 | 40.000 | 0.00 | 0.00 | 0.00 | 3.50 |
1476 | 1597 | 6.257630 | ACAATAACAACAGCACCAAAATGTTC | 59.742 | 34.615 | 0.00 | 0.00 | 35.04 | 3.18 |
1479 | 1600 | 7.437862 | ACTTACAATAACAACAGCACCAAAATG | 59.562 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
1498 | 1619 | 9.299963 | CAAGTTGAAATGTTGAATCACTTACAA | 57.700 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
1502 | 1623 | 5.459762 | CGCAAGTTGAAATGTTGAATCACTT | 59.540 | 36.000 | 7.16 | 0.00 | 0.00 | 3.16 |
1504 | 1625 | 4.375305 | GCGCAAGTTGAAATGTTGAATCAC | 60.375 | 41.667 | 7.16 | 0.00 | 41.68 | 3.06 |
1510 | 1631 | 3.492725 | CTTGCGCAAGTTGAAATGTTG | 57.507 | 42.857 | 36.23 | 12.15 | 41.68 | 3.33 |
1525 | 1646 | 2.225019 | AGTGAGCATCTTCAAACTTGCG | 59.775 | 45.455 | 0.00 | 0.00 | 40.00 | 4.85 |
1536 | 1657 | 6.687081 | GTCAGTAGTAACTAGTGAGCATCT | 57.313 | 41.667 | 0.00 | 0.00 | 44.07 | 2.90 |
1541 | 1662 | 5.706369 | ACACAGGTCAGTAGTAACTAGTGAG | 59.294 | 44.000 | 0.00 | 0.00 | 44.07 | 3.51 |
1542 | 1663 | 5.472478 | CACACAGGTCAGTAGTAACTAGTGA | 59.528 | 44.000 | 0.00 | 0.00 | 42.10 | 3.41 |
1543 | 1664 | 5.241064 | ACACACAGGTCAGTAGTAACTAGTG | 59.759 | 44.000 | 0.00 | 0.00 | 38.38 | 2.74 |
1544 | 1665 | 5.241064 | CACACACAGGTCAGTAGTAACTAGT | 59.759 | 44.000 | 0.00 | 0.00 | 33.48 | 2.57 |
1545 | 1666 | 5.700846 | CACACACAGGTCAGTAGTAACTAG | 58.299 | 45.833 | 0.00 | 0.00 | 33.48 | 2.57 |
1546 | 1667 | 4.022589 | GCACACACAGGTCAGTAGTAACTA | 60.023 | 45.833 | 0.00 | 0.00 | 33.48 | 2.24 |
1547 | 1668 | 3.243771 | GCACACACAGGTCAGTAGTAACT | 60.244 | 47.826 | 0.00 | 0.00 | 35.91 | 2.24 |
1548 | 1669 | 3.057734 | GCACACACAGGTCAGTAGTAAC | 58.942 | 50.000 | 0.00 | 0.00 | 0.00 | 2.50 |
1555 | 1676 | 0.940126 | GTTGAGCACACACAGGTCAG | 59.060 | 55.000 | 0.00 | 0.00 | 43.43 | 3.51 |
1573 | 1694 | 2.244651 | GGCAGAAACACTCACGCGT | 61.245 | 57.895 | 5.58 | 5.58 | 0.00 | 6.01 |
1574 | 1695 | 0.666274 | TAGGCAGAAACACTCACGCG | 60.666 | 55.000 | 3.53 | 3.53 | 0.00 | 6.01 |
1575 | 1696 | 1.394917 | CATAGGCAGAAACACTCACGC | 59.605 | 52.381 | 0.00 | 0.00 | 0.00 | 5.34 |
1589 | 1710 | 1.403647 | GGAACCGCCAAAAACATAGGC | 60.404 | 52.381 | 0.00 | 0.00 | 44.89 | 3.93 |
1607 | 1728 | 0.393132 | TGGTCAGTTGCACGTTTGGA | 60.393 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1622 | 1743 | 7.321153 | AGTACAAATACAGTGTAGTGATGGTC | 58.679 | 38.462 | 18.82 | 7.14 | 34.53 | 4.02 |
1643 | 1764 | 9.623000 | AACCAATTACAGGGAACAATATAGTAC | 57.377 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
1656 | 1777 | 8.019094 | CGACTTTTTACTTAACCAATTACAGGG | 58.981 | 37.037 | 0.00 | 0.00 | 0.00 | 4.45 |
1669 | 1790 | 8.483307 | ACAACTTCAGTTCGACTTTTTACTTA | 57.517 | 30.769 | 0.00 | 0.00 | 35.83 | 2.24 |
1671 | 1792 | 6.980051 | ACAACTTCAGTTCGACTTTTTACT | 57.020 | 33.333 | 0.00 | 0.00 | 35.83 | 2.24 |
1672 | 1793 | 7.019418 | ACAACAACTTCAGTTCGACTTTTTAC | 58.981 | 34.615 | 0.00 | 0.00 | 35.83 | 2.01 |
1673 | 1794 | 7.136289 | ACAACAACTTCAGTTCGACTTTTTA | 57.864 | 32.000 | 0.00 | 0.00 | 35.83 | 1.52 |
1674 | 1795 | 6.009115 | ACAACAACTTCAGTTCGACTTTTT | 57.991 | 33.333 | 0.00 | 0.00 | 35.83 | 1.94 |
1678 | 1799 | 3.118738 | AGGACAACAACTTCAGTTCGACT | 60.119 | 43.478 | 0.00 | 0.00 | 35.83 | 4.18 |
1681 | 1802 | 3.194861 | TCAGGACAACAACTTCAGTTCG | 58.805 | 45.455 | 0.00 | 0.00 | 35.83 | 3.95 |
1685 | 1806 | 2.227388 | GGCATCAGGACAACAACTTCAG | 59.773 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1691 | 1812 | 2.299582 | CCATTTGGCATCAGGACAACAA | 59.700 | 45.455 | 0.00 | 0.00 | 46.58 | 2.83 |
1694 | 1815 | 1.894466 | CACCATTTGGCATCAGGACAA | 59.106 | 47.619 | 6.62 | 0.00 | 44.80 | 3.18 |
1696 | 1817 | 0.174162 | GCACCATTTGGCATCAGGAC | 59.826 | 55.000 | 6.62 | 0.00 | 39.32 | 3.85 |
1718 | 1839 | 1.804748 | GTAACAGCCACCACAGCTTAC | 59.195 | 52.381 | 0.00 | 0.00 | 38.95 | 2.34 |
1719 | 1840 | 1.697432 | AGTAACAGCCACCACAGCTTA | 59.303 | 47.619 | 0.00 | 0.00 | 38.95 | 3.09 |
1720 | 1841 | 0.474184 | AGTAACAGCCACCACAGCTT | 59.526 | 50.000 | 0.00 | 0.00 | 38.95 | 3.74 |
1721 | 1842 | 1.276421 | CTAGTAACAGCCACCACAGCT | 59.724 | 52.381 | 0.00 | 0.00 | 42.70 | 4.24 |
1736 | 1938 | 3.883489 | CAGATGGATCGGTGACACTAGTA | 59.117 | 47.826 | 5.39 | 0.00 | 0.00 | 1.82 |
1754 | 1956 | 5.178096 | TCATGAACATACAACCACCAGAT | 57.822 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
1758 | 1960 | 7.222611 | GCAAATAATCATGAACATACAACCACC | 59.777 | 37.037 | 0.00 | 0.00 | 0.00 | 4.61 |
1763 | 1965 | 7.774134 | AGCAGCAAATAATCATGAACATACAA | 58.226 | 30.769 | 0.00 | 0.00 | 0.00 | 2.41 |
1764 | 1966 | 7.337480 | AGCAGCAAATAATCATGAACATACA | 57.663 | 32.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1765 | 1967 | 7.703621 | ACAAGCAGCAAATAATCATGAACATAC | 59.296 | 33.333 | 0.00 | 0.00 | 0.00 | 2.39 |
1766 | 1968 | 7.774134 | ACAAGCAGCAAATAATCATGAACATA | 58.226 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
1767 | 1969 | 6.636705 | ACAAGCAGCAAATAATCATGAACAT | 58.363 | 32.000 | 0.00 | 0.00 | 0.00 | 2.71 |
1768 | 1970 | 6.028146 | ACAAGCAGCAAATAATCATGAACA | 57.972 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
1769 | 1971 | 6.035327 | GGAACAAGCAGCAAATAATCATGAAC | 59.965 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
1770 | 1972 | 6.071221 | AGGAACAAGCAGCAAATAATCATGAA | 60.071 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
1771 | 1973 | 5.419788 | AGGAACAAGCAGCAAATAATCATGA | 59.580 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
1772 | 1974 | 5.657474 | AGGAACAAGCAGCAAATAATCATG | 58.343 | 37.500 | 0.00 | 0.00 | 0.00 | 3.07 |
1773 | 1975 | 5.655532 | AGAGGAACAAGCAGCAAATAATCAT | 59.344 | 36.000 | 0.00 | 0.00 | 0.00 | 2.45 |
1792 | 1994 | 9.567776 | TCAAATAAGTTGTATTTTCACAGAGGA | 57.432 | 29.630 | 0.00 | 0.00 | 38.47 | 3.71 |
1793 | 1995 | 9.612620 | GTCAAATAAGTTGTATTTTCACAGAGG | 57.387 | 33.333 | 0.00 | 0.00 | 38.47 | 3.69 |
1810 | 2012 | 7.125113 | GCACCAAACAACAATTGTCAAATAAG | 58.875 | 34.615 | 12.39 | 1.50 | 44.59 | 1.73 |
1818 | 2020 | 4.268359 | ATTTGGCACCAAACAACAATTGT | 58.732 | 34.783 | 16.76 | 4.92 | 46.80 | 2.71 |
1821 | 2023 | 5.619220 | ACATATTTGGCACCAAACAACAAT | 58.381 | 33.333 | 16.76 | 3.24 | 46.80 | 2.71 |
1822 | 2026 | 5.028549 | ACATATTTGGCACCAAACAACAA | 57.971 | 34.783 | 16.76 | 1.96 | 46.80 | 2.83 |
1853 | 2057 | 7.124298 | AGAGCTAATCTTATTATGGCATACCGA | 59.876 | 37.037 | 6.72 | 2.04 | 34.27 | 4.69 |
1873 | 2092 | 4.777896 | AGTTACCACTGATCCAAAGAGCTA | 59.222 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
1881 | 2100 | 6.356556 | CCATTCATAAGTTACCACTGATCCA | 58.643 | 40.000 | 0.00 | 0.00 | 31.60 | 3.41 |
1888 | 2107 | 6.555315 | CAAGAAGCCATTCATAAGTTACCAC | 58.445 | 40.000 | 0.00 | 0.00 | 37.94 | 4.16 |
1906 | 2128 | 6.429385 | AGAAGTCAACCTATTTGAGCAAGAAG | 59.571 | 38.462 | 0.00 | 0.00 | 45.23 | 2.85 |
1964 | 2186 | 2.124411 | GGTACCCTTCTCTATGCCCAA | 58.876 | 52.381 | 0.00 | 0.00 | 0.00 | 4.12 |
2038 | 2260 | 2.671619 | GCGGCCTTGTAGGTGCAA | 60.672 | 61.111 | 0.00 | 0.00 | 38.30 | 4.08 |
2173 | 2395 | 8.203681 | AGTGAATTTACCTGTAGAAACTACCT | 57.796 | 34.615 | 6.49 | 0.00 | 0.00 | 3.08 |
2200 | 2423 | 5.416952 | AGGGCAAGTGAAAATATTGTCAGAG | 59.583 | 40.000 | 8.66 | 3.52 | 30.16 | 3.35 |
2203 | 2426 | 5.076182 | TCAGGGCAAGTGAAAATATTGTCA | 58.924 | 37.500 | 4.07 | 4.07 | 30.16 | 3.58 |
2212 | 2435 | 1.888512 | GCAAGATCAGGGCAAGTGAAA | 59.111 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
2219 | 2442 | 1.279496 | AGTACAGCAAGATCAGGGCA | 58.721 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2220 | 2443 | 3.760580 | ATAGTACAGCAAGATCAGGGC | 57.239 | 47.619 | 0.00 | 0.00 | 0.00 | 5.19 |
2222 | 2445 | 4.510711 | CAGCAATAGTACAGCAAGATCAGG | 59.489 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
2232 | 2455 | 5.126067 | ACCTTATTGGCAGCAATAGTACAG | 58.874 | 41.667 | 0.00 | 0.00 | 40.22 | 2.74 |
2245 | 2468 | 7.492344 | CAGATAATGTCCAAAAACCTTATTGGC | 59.508 | 37.037 | 0.00 | 0.00 | 44.63 | 4.52 |
2255 | 2478 | 8.859090 | AGTTTGATGTCAGATAATGTCCAAAAA | 58.141 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
2261 | 2484 | 6.093219 | ACAGCAGTTTGATGTCAGATAATGTC | 59.907 | 38.462 | 0.00 | 0.00 | 44.55 | 3.06 |
2283 | 2506 | 2.416547 | CCTAACAGCGTGATCCAAACAG | 59.583 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2349 | 2572 | 4.030913 | CAGTCCCAGTAGTCCCATCTTTA | 58.969 | 47.826 | 0.00 | 0.00 | 0.00 | 1.85 |
2400 | 2623 | 3.198068 | CTGGTATGCAAGCATAGTTCGT | 58.802 | 45.455 | 14.57 | 0.00 | 39.29 | 3.85 |
2446 | 2669 | 8.357402 | AGTTTACCAACTATTGTAAAAAGCAGG | 58.643 | 33.333 | 0.00 | 0.00 | 41.81 | 4.85 |
2477 | 2700 | 6.994421 | TGTCTAAGGATACAGCATAATCCA | 57.006 | 37.500 | 12.19 | 0.00 | 43.55 | 3.41 |
2513 | 2736 | 7.235812 | ACTCTGAAGTACCCAAAGAGTAAAGAT | 59.764 | 37.037 | 13.50 | 0.00 | 44.35 | 2.40 |
2535 | 2758 | 2.644798 | AGGAAGGCATTACCACAACTCT | 59.355 | 45.455 | 0.00 | 0.00 | 43.14 | 3.24 |
2542 | 2765 | 3.245586 | ACATTTCCAGGAAGGCATTACCA | 60.246 | 43.478 | 1.07 | 0.00 | 43.14 | 3.25 |
2543 | 2766 | 3.365472 | ACATTTCCAGGAAGGCATTACC | 58.635 | 45.455 | 1.07 | 0.00 | 37.29 | 2.85 |
2544 | 2767 | 4.036852 | GCTACATTTCCAGGAAGGCATTAC | 59.963 | 45.833 | 1.07 | 0.00 | 37.29 | 1.89 |
2545 | 2768 | 4.207165 | GCTACATTTCCAGGAAGGCATTA | 58.793 | 43.478 | 1.07 | 0.00 | 37.29 | 1.90 |
2546 | 2769 | 3.026694 | GCTACATTTCCAGGAAGGCATT | 58.973 | 45.455 | 1.07 | 0.00 | 37.29 | 3.56 |
2547 | 2770 | 2.025037 | TGCTACATTTCCAGGAAGGCAT | 60.025 | 45.455 | 1.07 | 0.00 | 37.29 | 4.40 |
2574 | 2803 | 3.211045 | ACGCTCTTAAGAAGCCAAACAA | 58.789 | 40.909 | 6.63 | 0.00 | 0.00 | 2.83 |
2662 | 2907 | 9.841295 | AACAAAGTAAACTATACTTGTCCAAGA | 57.159 | 29.630 | 13.69 | 0.00 | 40.79 | 3.02 |
2691 | 2936 | 7.283127 | GTGCCAGGAGAATTTCTACATAAATGA | 59.717 | 37.037 | 11.22 | 0.00 | 26.62 | 2.57 |
2733 | 2978 | 2.386661 | AGACAAGTTACAGGGCATCG | 57.613 | 50.000 | 0.00 | 0.00 | 0.00 | 3.84 |
2740 | 2985 | 2.851195 | ACCCTGCAAGACAAGTTACAG | 58.149 | 47.619 | 0.00 | 0.00 | 34.07 | 2.74 |
2796 | 3041 | 9.647918 | AGTAGATTTGACTTGGATACTATCTCA | 57.352 | 33.333 | 0.00 | 0.00 | 37.61 | 3.27 |
2922 | 3167 | 2.413310 | TGCATGACACATCTGATGCT | 57.587 | 45.000 | 17.24 | 2.91 | 41.49 | 3.79 |
2986 | 3231 | 3.197766 | TGCCATAGAAACAGGAATCGTCT | 59.802 | 43.478 | 0.00 | 0.00 | 0.00 | 4.18 |
2989 | 3234 | 3.535561 | AGTGCCATAGAAACAGGAATCG | 58.464 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
3025 | 3271 | 2.167487 | TGACTGTAGTGTGTGCAACTGA | 59.833 | 45.455 | 0.00 | 0.00 | 38.04 | 3.41 |
3027 | 3273 | 2.979814 | TGACTGTAGTGTGTGCAACT | 57.020 | 45.000 | 0.00 | 0.00 | 38.04 | 3.16 |
3028 | 3274 | 4.750098 | ACTTATGACTGTAGTGTGTGCAAC | 59.250 | 41.667 | 0.00 | 0.00 | 37.35 | 4.17 |
3029 | 3275 | 4.956085 | ACTTATGACTGTAGTGTGTGCAA | 58.044 | 39.130 | 0.00 | 0.00 | 0.00 | 4.08 |
3031 | 3277 | 4.556233 | TGACTTATGACTGTAGTGTGTGC | 58.444 | 43.478 | 0.00 | 0.00 | 0.00 | 4.57 |
3037 | 3286 | 4.948004 | TGGACGATGACTTATGACTGTAGT | 59.052 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
3056 | 3306 | 7.228706 | TCTCTTGTTAGTTCAAAGGAAATGGAC | 59.771 | 37.037 | 0.00 | 0.00 | 34.13 | 4.02 |
3112 | 3362 | 2.424956 | CCATAGGAAGCAAGTGGAAAGC | 59.575 | 50.000 | 0.00 | 0.00 | 31.59 | 3.51 |
3113 | 3363 | 2.424956 | GCCATAGGAAGCAAGTGGAAAG | 59.575 | 50.000 | 0.00 | 0.00 | 31.59 | 2.62 |
3117 | 3367 | 1.097547 | CCGCCATAGGAAGCAAGTGG | 61.098 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3118 | 3368 | 0.392998 | ACCGCCATAGGAAGCAAGTG | 60.393 | 55.000 | 0.00 | 0.00 | 34.73 | 3.16 |
3134 | 3384 | 2.126463 | AGACGCACGTCATCACCG | 60.126 | 61.111 | 23.59 | 0.00 | 46.76 | 4.94 |
3144 | 3394 | 1.070309 | CACTTTTCAGAGCAGACGCAC | 60.070 | 52.381 | 0.00 | 0.00 | 42.27 | 5.34 |
3147 | 3397 | 1.506493 | AGCACTTTTCAGAGCAGACG | 58.494 | 50.000 | 0.00 | 0.00 | 38.99 | 4.18 |
3149 | 3399 | 3.751479 | TGTAGCACTTTTCAGAGCAGA | 57.249 | 42.857 | 0.00 | 0.00 | 38.99 | 4.26 |
3157 | 3407 | 4.010349 | AGCCCACTAATGTAGCACTTTTC | 58.990 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
3158 | 3408 | 4.034285 | AGCCCACTAATGTAGCACTTTT | 57.966 | 40.909 | 0.00 | 0.00 | 0.00 | 2.27 |
3162 | 3412 | 3.536956 | TGTAGCCCACTAATGTAGCAC | 57.463 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
3171 | 3421 | 5.487131 | TCATTATGCCATATGTAGCCCACTA | 59.513 | 40.000 | 1.24 | 0.00 | 0.00 | 2.74 |
3184 | 3434 | 5.858381 | ACTAGATGTCGTTCATTATGCCAT | 58.142 | 37.500 | 0.00 | 0.00 | 36.83 | 4.40 |
3185 | 3435 | 5.276461 | ACTAGATGTCGTTCATTATGCCA | 57.724 | 39.130 | 0.00 | 0.00 | 36.83 | 4.92 |
3186 | 3436 | 5.986135 | AGAACTAGATGTCGTTCATTATGCC | 59.014 | 40.000 | 9.51 | 0.00 | 41.40 | 4.40 |
3187 | 3437 | 8.642885 | CATAGAACTAGATGTCGTTCATTATGC | 58.357 | 37.037 | 9.51 | 0.00 | 41.40 | 3.14 |
3188 | 3438 | 9.684448 | ACATAGAACTAGATGTCGTTCATTATG | 57.316 | 33.333 | 9.51 | 10.71 | 41.40 | 1.90 |
3192 | 3442 | 9.900710 | GAATACATAGAACTAGATGTCGTTCAT | 57.099 | 33.333 | 9.51 | 0.05 | 41.40 | 2.57 |
3193 | 3443 | 8.350722 | GGAATACATAGAACTAGATGTCGTTCA | 58.649 | 37.037 | 9.51 | 0.00 | 41.40 | 3.18 |
3194 | 3444 | 7.808856 | GGGAATACATAGAACTAGATGTCGTTC | 59.191 | 40.741 | 0.00 | 0.00 | 39.74 | 3.95 |
3195 | 3445 | 7.287005 | TGGGAATACATAGAACTAGATGTCGTT | 59.713 | 37.037 | 0.00 | 0.00 | 37.47 | 3.85 |
3196 | 3446 | 6.776116 | TGGGAATACATAGAACTAGATGTCGT | 59.224 | 38.462 | 0.00 | 0.00 | 37.47 | 4.34 |
3197 | 3447 | 7.215719 | TGGGAATACATAGAACTAGATGTCG | 57.784 | 40.000 | 0.00 | 0.00 | 37.47 | 4.35 |
3198 | 3448 | 7.093992 | GCTGGGAATACATAGAACTAGATGTC | 58.906 | 42.308 | 0.00 | 0.00 | 37.47 | 3.06 |
3199 | 3449 | 6.554982 | TGCTGGGAATACATAGAACTAGATGT | 59.445 | 38.462 | 0.00 | 0.00 | 39.57 | 3.06 |
3200 | 3450 | 6.997655 | TGCTGGGAATACATAGAACTAGATG | 58.002 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3201 | 3451 | 6.784969 | ACTGCTGGGAATACATAGAACTAGAT | 59.215 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
3202 | 3452 | 6.136857 | ACTGCTGGGAATACATAGAACTAGA | 58.863 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3203 | 3453 | 6.412362 | ACTGCTGGGAATACATAGAACTAG | 57.588 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
3237 | 3600 | 7.079451 | ACGATATCCCTGAAATGTTTAGGAT | 57.921 | 36.000 | 0.00 | 0.00 | 37.80 | 3.24 |
3298 | 3662 | 2.260869 | GCAGAACGCCCTTGCTTCA | 61.261 | 57.895 | 0.00 | 0.00 | 34.43 | 3.02 |
3328 | 3692 | 2.480416 | CGCTGACATGGTACTCTCTTCC | 60.480 | 54.545 | 0.00 | 0.00 | 0.00 | 3.46 |
3337 | 3701 | 1.391933 | ATCTCGCCGCTGACATGGTA | 61.392 | 55.000 | 0.00 | 0.00 | 0.00 | 3.25 |
3340 | 3704 | 0.031314 | AGTATCTCGCCGCTGACATG | 59.969 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
3341 | 3705 | 0.747255 | AAGTATCTCGCCGCTGACAT | 59.253 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
3349 | 3713 | 2.139118 | GAATGGCTCAAGTATCTCGCC | 58.861 | 52.381 | 0.00 | 0.00 | 41.06 | 5.54 |
3562 | 3926 | 2.358737 | ACAACAGCGGCTACCTGC | 60.359 | 61.111 | 0.26 | 0.00 | 41.94 | 4.85 |
3602 | 3966 | 2.642311 | TGTCAGCATCCTTAACCCTCAA | 59.358 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
3849 | 4215 | 1.372501 | AGGAGGTGCTGGTTTACCAT | 58.627 | 50.000 | 1.37 | 0.00 | 46.46 | 3.55 |
3852 | 4218 | 1.351350 | AGGAAGGAGGTGCTGGTTTAC | 59.649 | 52.381 | 0.00 | 0.00 | 0.00 | 2.01 |
3874 | 4240 | 4.939052 | TTACCTGCTAGTATGCTCTTCC | 57.061 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
3878 | 4244 | 5.611374 | TGGAATTTACCTGCTAGTATGCTC | 58.389 | 41.667 | 0.00 | 0.00 | 0.00 | 4.26 |
4031 | 4397 | 2.715737 | TCCCGTGCAAAAATGTAAGC | 57.284 | 45.000 | 0.00 | 0.00 | 0.00 | 3.09 |
4238 | 4621 | 3.369756 | GGACGATCGCATTACAGTTTTGA | 59.630 | 43.478 | 16.60 | 0.00 | 0.00 | 2.69 |
4277 | 4664 | 2.760092 | CCAACCACAATCGAATCCCAAT | 59.240 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
4278 | 4665 | 2.166829 | CCAACCACAATCGAATCCCAA | 58.833 | 47.619 | 0.00 | 0.00 | 0.00 | 4.12 |
4280 | 4667 | 1.102978 | CCCAACCACAATCGAATCCC | 58.897 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4281 | 4668 | 1.472480 | CACCCAACCACAATCGAATCC | 59.528 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
4284 | 4671 | 0.538516 | CCCACCCAACCACAATCGAA | 60.539 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
4285 | 4672 | 1.074072 | CCCACCCAACCACAATCGA | 59.926 | 57.895 | 0.00 | 0.00 | 0.00 | 3.59 |
4286 | 4673 | 1.074072 | TCCCACCCAACCACAATCG | 59.926 | 57.895 | 0.00 | 0.00 | 0.00 | 3.34 |
4287 | 4674 | 1.241315 | CGTCCCACCCAACCACAATC | 61.241 | 60.000 | 0.00 | 0.00 | 0.00 | 2.67 |
4288 | 4675 | 1.228429 | CGTCCCACCCAACCACAAT | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 2.71 |
4289 | 4676 | 2.193517 | CGTCCCACCCAACCACAA | 59.806 | 61.111 | 0.00 | 0.00 | 0.00 | 3.33 |
4303 | 4690 | 3.482783 | GCTGCTGAAGGCGACGTC | 61.483 | 66.667 | 5.18 | 5.18 | 45.43 | 4.34 |
4418 | 4810 | 4.065789 | ACAAAGCTAGCAGAACAAGTACC | 58.934 | 43.478 | 18.83 | 0.00 | 0.00 | 3.34 |
4419 | 4811 | 5.674933 | AACAAAGCTAGCAGAACAAGTAC | 57.325 | 39.130 | 18.83 | 0.00 | 0.00 | 2.73 |
4522 | 4920 | 0.320374 | CAGTCAGGTGGCGTTCCTAA | 59.680 | 55.000 | 0.00 | 0.00 | 33.54 | 2.69 |
4524 | 4922 | 0.830444 | TACAGTCAGGTGGCGTTCCT | 60.830 | 55.000 | 0.00 | 0.00 | 35.45 | 3.36 |
4545 | 4943 | 6.309494 | TCGACACGTATTTCTAGGAAAACATG | 59.691 | 38.462 | 0.00 | 0.00 | 0.00 | 3.21 |
4552 | 4950 | 3.376234 | CAGGTCGACACGTATTTCTAGGA | 59.624 | 47.826 | 18.91 | 0.00 | 0.00 | 2.94 |
4557 | 4955 | 1.654105 | CAGCAGGTCGACACGTATTTC | 59.346 | 52.381 | 18.91 | 0.00 | 0.00 | 2.17 |
4559 | 4957 | 0.885879 | TCAGCAGGTCGACACGTATT | 59.114 | 50.000 | 18.91 | 0.00 | 0.00 | 1.89 |
4586 | 4984 | 1.905922 | GCTCTCGCCAACTGTTGAGC | 61.906 | 60.000 | 21.49 | 19.53 | 39.74 | 4.26 |
4620 | 5019 | 6.239176 | GCTCAAATGGTGCTATCTACTCTACT | 60.239 | 42.308 | 0.00 | 0.00 | 33.29 | 2.57 |
4621 | 5020 | 5.923684 | GCTCAAATGGTGCTATCTACTCTAC | 59.076 | 44.000 | 0.00 | 0.00 | 33.29 | 2.59 |
4623 | 5022 | 4.406972 | TGCTCAAATGGTGCTATCTACTCT | 59.593 | 41.667 | 0.00 | 0.00 | 36.94 | 3.24 |
4624 | 5023 | 4.697514 | TGCTCAAATGGTGCTATCTACTC | 58.302 | 43.478 | 0.00 | 0.00 | 36.94 | 2.59 |
4625 | 5024 | 4.701765 | CTGCTCAAATGGTGCTATCTACT | 58.298 | 43.478 | 0.00 | 0.00 | 36.94 | 2.57 |
4626 | 5025 | 3.249559 | GCTGCTCAAATGGTGCTATCTAC | 59.750 | 47.826 | 0.00 | 0.00 | 36.94 | 2.59 |
4627 | 5026 | 3.135348 | AGCTGCTCAAATGGTGCTATCTA | 59.865 | 43.478 | 0.00 | 0.00 | 36.94 | 1.98 |
4628 | 5027 | 2.092538 | AGCTGCTCAAATGGTGCTATCT | 60.093 | 45.455 | 0.00 | 0.00 | 36.94 | 1.98 |
4629 | 5028 | 2.290093 | GAGCTGCTCAAATGGTGCTATC | 59.710 | 50.000 | 24.02 | 0.00 | 36.94 | 2.08 |
4645 | 5044 | 2.173356 | TCTTTATCATGGGGTGGAGCTG | 59.827 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.