>input_sequence_28979
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ATGGCGCTCGCCTCCACCACCGCCTCCCGCCTCATCAGCCGCCGCCTCGCCGCTCCCCTCCCGCCTCCTCCTTCCTCTTC
CTGCGCCGCGCCGCGAGGAGGGGCCAGGCCAGGGCCGCGCCGGTTCGCGGTGCGCTGGGAGGGCAGGCCGAGAGCGCTGT
TGGGAGGATTCTCGGACGCCGGCGAAGATGCCAGCGACGACGAGGACGAGGAGGATGGCCCCGGCGCGCTCAGCGGTGGG
CCGCCGAGGCAGGAGAAGGGGTGCGAGGACGTCATCGAGCTCGCCGCCGCTGCCTTCTCCGGGCCCGAGCGCTGGGACGT
GCTCGGACTCGGCCAGGCCATGGTGCGCACACTCCTGTGTCCCTCGCCTTTCTTTCTCACTTTGATACCAATTTGCAAAC
GAACAGTAGCTTGAACATAAGAAACTGGAAACTTCCACAATAGAAACGTAGGGCATTGACTAGGTTAGGACTCTGAGAAC
ATTTTGGTGCTGTTGTTATTGTAAGTGATTCAACATTTCAACTTGCGCAAGTTTGAAGATGCTCACTAGTTACTACTGAC
CTGTGTGTGCTCAACGCGTGAGTGTTTCTGCCTATGTTTTTGGCGGTTCCAAACGTGCAACTGACCATCACTACACTGTA
TTTGTACTATATTGTTCCCTGTAATTGGTTAAGTAAAAAGTCGAACTGAAGTTGTTGTCCTGATGCCAAATGGTGCCAGT
AA------------------------------------------------------------------------------
---GCTGTGGTGGCTGTTACTAGTGTCACCGATCCATCTGGTGGTTGTATGTTCATGATTATTTGCTGCTTGTTCCTCTG
TGAAAATACAACTTATTTGACAA--TTGTTGTTTGGTGCCAAATATGTAATGGGCATC-------GGTATGCCATAATAA
--------GATTAGCTCTTTGGATCAGTGGTA---ACTTATGAATGGCTTCTTGCTCAAATAGGTTGACTTCTCAGGCAT
GGTGGACGATGAATTCCTCGAGAGATTGGGCATAGAGAAGGGTACCAGGAAGGTCGTTAACCATGAGGAGAGGGGACGGG
TCTTGCGTGCCATGGATGGTTGCACCTACAAGGCCGCTGCCGGAGGCTCACTGTCCAACTCGCTTGTGGCTCTAGCAAGG
CTTGGTAGTAGTCGGGCCAGCAGCTACCCTGAGCTTAGAATAGCAATGGCTGGCAGTGTGGGCAGTGACCCACTAGGTAG
TTTCTACAGGT-AAATTCACTACTCTGACAATATTTTCACTTGCCCTGATCTTGCTGTACTATTGCTGCCAATAAGGTTT
TTGGACATTATCTGACATCAAACTGCTGTTTGGATCACGCTGTTAGGCAAAAGTTGCATCGTGCTAATGTGCAATTCTTG
TCCAAGCCGGTTAAAGATGGGACTACTGGGACTGTGATTGTTCTAACAACTCCAGATGCACAACGAACTATGCTTGCATA
CCAGGTTAGTTTCTTCACTAATGGCTTTCCTGCTTTTTACAATAGTTGGTAAACTTGTCTGGATTATGCTGTATCCTTAG
ACATAAGTTTATATGATCTTTACTCTTTGGGTACTTCAGAGTTGTGGTAATGC------CTTCCTGGAAATGTAGCAATT
CATTGTTTGGCTTCTTAAGAGCGTATATTATACA-------------CACTGT-TTATTTGAAGTATG--GATAACATTG
AGAAAATCCATCTTATATCAATTTTTTCTTGGACAAGTATAGTTTACTTTGTTGGTCATTTATGTAGAAATTCTCCTGGC
ACTACCTTATTCTCTAACGATGCCCTGTAACTTGTCTTGCAGGGTACATCTTCAACTTTGGCTTACGATTCAGACTTGGC
TGAGATAGTATCCAAGTCAAATCTACTGATAGTGGAAGGGTACCTATTCGAGTTTAGTCATACAATTGAAGCCATCAAAC
AGGCATGTGAAGATGCTAAGAAGAATGGTGCACTTATTGCTGTTTCAGCATCAGATGTGTCATGCATCAAGCGTTGCCAC
AGTGATTTTTGGTGAGACTAGCCTCCGTGCAGACGA-TTCCTGTTTCTATGGCACTTGCAATTATCTCGTTCAGTTG---
CACACACTACAGTC-ATAAGTCATCGTCCATTTCCTTTGAACTAACAAGAGATCCAAGTTATAAATCAGGAAAAAGAGGT
GGCTTTCCACTTGCTTCCTATGGCGGTGATGACGTGCGTCTGCTCTGAAAAGTGCTACATTAGTGGGCTACATATGGCAT
AATGAACGACATCTAGTTCTATGT--------------------------------------------------------
---------------------------------------------------------ATTCCCAGCAGTACTGACTCCGA
TCCTAAACA-TTTCAGGGATATCGTAGGAAACTATGCAGACATATTGTTCGCCAATGCCAATGAAGCAAGGGCGTTCTGC
GAGCTAACCTCGGAAGAGAGTACCATGTCAGCGGCGAGATACTTGAGCCATTCTATCCCTCTAGTGTCTGTTACAGATGG
TATGCACGGTTCCTACATCGGTGTGAAAGGTGAAGCAATATACATCCCCCCGCCGGCATGTATACCTGTGGACACCTGCG
GAGCTGGTGATGCATACGCATCAGGAATCCTGTACGGTATCCTCCGGGGCGCATCGGACTTGAAGGGCATCGGCCTTCTG
GCTGCGCAGGTAGCCGCTGTTGTCGTCGGGCAGCAAGGCACGCGCTTGAGGGTTAAGGATGCTGACAGATTGGCTGAATC
GTTCGAGTTCCACCTTGACAACTTGGAGTTCTGTTCAGATGCTGGAACGGACCAGGTTCCCAACTTATGA----------
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>chr1D_1_TraesCS1D01G195000
TCGTACAGGTCTCGTGACGATGACCTCTTTTAGATGAATTATGGTTGTT-----TCA---TGAAAATTTGAACTTCTACC
TTTGATATGTATTGAAATTGCGAGCATATGATCATATTTGTTTGAATTCTTGTCCGCCCATTTCTTTATCACCGCTTTGG
TCTTTTATTAGTCAATGATTTATAGATG-GAGGACACCCTAACA-TACCGATTTAGCATTCCATTATCGGATCTCCTAAA
TGGGAAACATGAAAAGTAATTGAAATCTTGTGCCAACGGGCCATACGGAATTCACTTGTGATAAATCCCAATGATAGTTT
GAATGTGAAGAAGAGATATATAGCCAA----------TAGGCAAGCAATTTTAGACTTGATGTTGGAGTAGAGAAATGAT
TCCTAAGACTTATCCCTATTATACATAAAACTGCTTTTTAGTCACAATTTTTGGGTAACCTACCAGAGATACTCTTACCG
ACTGCCATAACTCAAGGCATGAGCAG-----------------------------------------------------A
TGCCATAGTTAGGTTTTATGATTTATGTCCTAGTCAGGAGCAGCGTGACATCGACGACTGACTTTTACGGAGTTACGTTT
TACATCCCCCCACCCACC----------------CCCGCACACACTTGAAATTCGGAATGAAGGAGAA----------GG
GTCTGTAGGACTTTTCATTGGATCCATCCATAAATTGTACCC-CTCTGAGTTCAAAAAAGAGTTGCAGCTTTGAACTAAG
ATCCAAAATAAATGTCACAGCTTTGAACTAAGATTCGGA----------------GTACATATTGTTCTTATAATAGTGT
GATGCATTTTTCTCATGCGTTTAGCGAAGATTTCCCAGAAAAGCTAGGAGCATGTGGTAAATTCTTATCCGGTCGGA-CC
GGCAACATAAACTTGCTTCCGTTTTCTATTTCTCAGCCTGGCCGTGGCCGGCCGCACGAGCTCCACGTCCTCTTCTCCCT
CCCCCACACCCTAATCCACTCCATTTCCCTGCTCCGAACACGGCACGGCTCCTC---TCCCACTCCCATCCCCCTCTCCA
ATGGCGCTCGCCTCCACCACCGCCTCCCGCCTCATCAGCCGCCGCCTCGCCGCTCCCCTCCCGCCTCCTCCTTCCTCTTC
CTGCGCCGCGCCGCGAGGAGGGGCCAGGCCAGGGCCGCGCCGGTTCGCGGTGCGCTGGGAGGGCAGGCCGAGAGCGCTGT
TGGGAGGATTCTCGGACGCCGGCGAAGATGCCAGCGACGACGAGGACGAGGAGGATGGCCCCGGCGCGCTCAGCGGTGGG
CCGCCGAGGCAGGAGAAGGGGTGCGAGGACGTCATCGAGCTCGCCGCCGCTGCCTTCTCCGGGCCCGAGCGCTGGGACGT
GCTCGGACTCGGCCAGGCCATGGTGCGCACACTCCTGTGTCCCTCGCCTTTCTTTCTCACTTTGATACCAATTTGCAAAC
GAACAGTAGCTTGAACATAAGAAACTGGAAACTTCCACAATAGAAACGTAGGGCATTGACTAGGTTAGGACTCTGAGAAC
ATTTTGGTGCTGTTGTTATTGTAAGTGATTCAACATTTCAACTTGCGCAAGTTTGAAGATGCTCACTAGTTACTACTGAC
CTGTGTGTGCTCAACGCGTGAGTGTTTCTGCCTATGTTTTTGGCGGTTCCAAACGTGCAACTGACCATCACTACACTGTA
TTTGTACTATATTGTTCCCTGTAATTGGTTAAGTAAAAAGTCGAACTGAAGTTGTTGTCCTGATGCCAAATGGTGCCAGT
AA------------------------------------------------------------------------------
---GCTGTGGTGGCTGTTACTAGTGTCACCGATCCATCTGGTGGTTGTATGTTCATGATTATTTGCTGCTTGTTCCTCTG
TGAAAATACAACTTATTTGACAA--TTGTTGTTTGGTGCCAAATATGTAATGGGCATC-------GGTATGCCATAATAA
--------GATTAGCTCTTTGGATCAGTGGTA---ACTTATGAATGGCTTCTTGCTCAAATAGGTTGACTTCTCAGGCAT
GGTGGACGATGAATTCCTCGAGAGATTGGGCATAGAGAAGGGTACCAGGAAGGTCGTTAACCATGAGGAGAGGGGACGGG
TCTTGCGTGCCATGGATGGTTGCACCTACAAGGCCGCTGCCGGAGGCTCACTGTCCAACTCGCTTGTGGCTCTAGCAAGG
CTTGGTAGTAGTCGGGCCAGCAGCTACCCTGAGCTTAGAATAGCAATGGCTGGCAGTGTGGGCAGTGACCCACTAGGTAG
TTTCTACAGGT-AAATTCACTACTCTGACAATATTTTCACTTGCCCTGATCTTGCTGTACTATTGCTGCCAATAAGGTTT
TTGGACATTATCTGACATCAAACTGCTGTTTGGATCACGCTGTTAGGCAAAAGTTGCATCGTGCTAATGTGCAATTCTTG
TCCAAGCCGGTTAAAGATGGGACTACTGGGACTGTGATTGTTCTAACAACTCCAGATGCACAACGAACTATGCTTGCATA
CCAGGTTAGTTTCTTCACTAATGGCTTTCCTGCTTTTTACAATAGTTGGTAAACTTGTCTGGATTATGCTGTATCCTTAG
ACATAAGTTTATATGATCTTTACTCTTTGGGTACTTCAGAGTTGTGGTAATGC------CTTCCTGGAAATGTAGCAATT
CATTGTTTGGCTTCTTAAGAGCGTATATTATACA-------------CACTGT-TTATTTGAAGTATG--GATAACATTG
AGAAAATCCATCTTATATCAATTTTTTCTTGGACAAGTATAGTTTACTTTGTTGGTCATTTATGTAGAAATTCTCCTGGC
ACTACCTTATTCTCTAACGATGCCCTGTAACTTGTCTTGCAGGGTACATCTTCAACTTTGGCTTACGATTCAGACTTGGC
TGAGATAGTATCCAAGTCAAATCTACTGATAGTGGAAGGGTACCTATTCGAGTTTAGTCATACAATTGAAGCCATCAAAC
AGGCATGTGAAGATGCTAAGAAGAATGGTGCACTTATTGCTGTTTCAGCATCAGATGTGTCATGCATCAAGCGTTGCCAC
AGTGATTTTTGGTGAGACTAGCCTCCGTGCAGACGA-TTCCTGTTTCTATGGCACTTGCAATTATCTCGTTCAGTTG---
CACACACTACAGTC-ATAAGTCATCGTCCATTTCCTTTGAACTAACAAGAGATCCAAGTTATAAATCAGGAAAAAGAGGT
GGCTTTCCACTTGCTTCCTATGGCGGTGATGACGTGCGTCTGCTCTGAAAAGTGCTACATTAGTGGGCTACATATGGCAT
AATGAACGACATCTAGTTCTATGT--------------------------------------------------------
---------------------------------------------------------ATTCCCAGCAGTACTGACTCCGA
TCCTAAACA-TTTCAGGGATATCGTAGGAAACTATGCAGACATATTGTTCGCCAATGCCAATGAAGCAAGGGCGTTCTGC
GAGCTAACCTCGGAAGAGAGTACCATGTCAGCGGCGAGATACTTGAGCCATTCTATCCCTCTAGTGTCTGTTACAGATGG
TATGCACGGTTCCTACATCGGTGTGAAAGGTGAAGCAATATACATCCCCCCGCCGGCATGTATACCTGTGGACACCTGCG
GAGCTGGTGATGCATACGCATCAGGAATCCTGTACGGTATCCTCCGGGGCGCATCGGACTTGAAGGGCATCGGCCTTCTG
GCTGCGCAGGTAGCCGCTGTTGTCGTCGGGCAGCAAGGCACGCGCTTGAGGGTTAAGGATGCTGACAGATTGGCTGAATC
GTTCGAGTTCCACCTTGACAACTTGGAGTTCTGTTCAGATGCTGGAACGGACCAGGTTCCCAACTTATGATTTTTCCTCC
CCCTCAAGTC--AAGTCCTCAACAGGCGGCGACGATGGGAACTACCGAGGGCCGAAGTGGGCTGTGCCCCCTTCTCTAGA
AGATCTCTTGAGCAATTGTTTAGTTTTACCACTCAGACTCAGGTTCTATATAAAATGGTAAACCAGCACCTCCTTCCTTG
GAAGAGCATACTAGCAGGTAAATTCCATCAGATTGCCGGCCCTTCAACTTCAAGCCCCACCGCGACAGGTCGTAGGCACA
TTCACTTGTATATAGCATCTCATTCCTTTAGTCCTAGCTCATTGTCAGCTCTCTCGGCCTCTGTCACCATTCCATTGCTT
ACATTTTTGCACGGGAAGGATGCTACATACATTGATACAC-------------GGGTATTTTTATTTCAAAAAAGGAACA
TGATATCATATGTTTGGCTGTAATGTAATG----CAGTCGAAAGACAAATGCCATCTTGGTCTAGAATGTGAATAAACTT
CTTTCGGCGGAACCTGTGTGTCCACTGACCGAATTCGCGTCAAAGGGGATATGCTTATCATCAAAACTGTAATGCGATCG
----TCCGACTTTGTTGGATGGGATTGGGATTCGATTGTGGTTGGGTGGGACGTCGCCTTCAGCAGCGAAAGGTATAATA
TCTTGAGCTA--CTAGTCAGAGCTGCACTGCAACCAAGTGCAGTTCAGTGACCCAGATTCTCTTCTTTCTGCTAGCC---
TATATATATGG--TACTTGTTCTGCTAGCTTTGTTTCTA---GCTTGTTAATTTTT-TGGATGCTGCGTGGCGTGGAGCA
CACGTATGCTTGCTTGTTTGCAAACTTTTTTTGTTTGATTTAGGAACGCCACCTGACTGTAACATGTTTTCCTAGAAATA
CGTGTCGACCTGCTGAGCCATTGGCTC-AACAGTTGGCGAGAGCTGTAGACTGTAGAGAGTAGAGTAGATAGCACCATTT
GAGCAGCTCCACCCCATGATAAAGAAAAAGTTTTACATATATACTCCCTTTGAAAACTAATATAA
>chr1B_3
--GTACTGGTCTCGTGACGATGACCTCTTTTGGATGAACTATGCTTGTTTAGTCTCA---TGAAATTTTGAACTTCTACC
TTTGATATGTATTGAAATTGCGAGGATATGATCATATTTGTTTGAATTCTTGCCCGTCCGTTTCTTTATCACCGCTTTGG
TCTTTTATTAGTCAATGATTTATAGATG-GAGGACACCCTAACA-TACCAAGTTAGCATTCAATTATCAGATCTCCTAAA
TGGGAAACATGAAAAGTAATCGAAATCTTGTGCCAACGGGCCATACGAAATTCACTTGTGATAAATCCCAATGACAGTTT
GAATGTGAAGAAGAGATATATAGCCAA----------TAGGCAAGCAATTTTAGACTTGATGTTGGAGTAGAAAAATGAT
TCCTAAGACTTATCCCTACTATACATAAAACTGCTTTTTAGTCACCATTTTTGGGTAACCTACCAAAGATACTCTTACCG
ACTGCCATAACTCAAGGCATGAGCAAATGCCATAGTTAGGTTTTATGATTTATGATGCCATAACTCAAGGCATGAGCAAA
TGCCATAGTTAGGTTTTATGATTTATGTCCTAGTTAGGAGCAGCGTTACATCCACGACTGACTTTTACACCCCCACCACA
--------------------------------------CACACACTTGAAATTCGGAATGAAGGAGAA----------G-
---------ACTTTTCATTGGATCCATCCATAAATTGTACCC-CTGTGAGTCAAAAAAAT-GTTGCAGCTTTGAACTAAG
GTCCAAAATAAATTTCACAGTTTTGAACTAAGATTCGGA----------------GTACATATTTTTCTTATAATAGTGT
GATGCATTTTTCTCATGCGTTTAGCGAAGATTTCCCAGAAAAGCTAGGAGCACGTGGTAAATCCTTATCCGGTCGGACCC
GGCAACATAAACTTGCTTCCGTTTTTACTTTCCCAGCCTGGCCGTGGCCGGCCGCACGAGCTCCACGTCCTCTTCTCCCT
CGCCCACACCCTAATCCACTCCATTTCCCTGCTCCGAACACGGCACGGCTCCTC---TCCCACTCCCATCCTCCTCTCCA
ATGGCGCTCGCCTCCACCACCGCCTCCCGCCTCATCAGCCGACGCCTCGTCGCTCCCCTCCCGCCTCCTCCTTCCTCTTC
CTGCGCCGCGCCGCGAGGAGGAGCCAGGCCAGGGCCGCGCCGGTTCGCGGTGCGCTGGGAGGGCAGGCCGAGAGCGCTGT
TGGGAGGATTCTCGGACGCCGACGAAGATGTCAGCGACGACGAGGACGAGGAGGACGGCCCCGGCGCGCTCAGCGGTGGG
CCGCCGCGGCAGCAGCAGGGGTGCGAGGACGTCATCGAGCTCGCCGCCGCTGCCTTCTCCGGGCCCGAGCGCTGGGACGT
GCTCGGACTCGGCCAGGCCATGGTGCGCACACTCACCTCTCTGTCTTACAGT-------------TGCTAATTTGCTATC
AACCAGTAGCTTCAAGCCTTCAACAT------------------AACGTAGGGCATTGACT-GGTTAGGACTCTGACAAG
ATTTTGGTGCTATTTCTACTGTTAATGATTTAACATTTCGACTTGTGCAAGTTTGACGAT--------------------
---TGCTTGCTAATGACCTGAGTGTTTCCTCCTATA--TTTGGCGGTGCCAAACGTGCAACTAACTATCACTACACTGCA
TTTCTACTATATTGTTTCCTGTAATTGGTAAGT--AAATGTGGAATTGAAGGTGGTTTCCTAATGCCAAATTGCAAGA--
------------------AACATTGACCCCTTCCATGCACCACAAATGCAGAATACACTTTAGCTAGTAATTGGTGTGAA
TAG-------------TAACTGGTGTCAGGGATTCGTCTCGTGGCC--------------ATTTGCTGCTTGTATG--TG
CGCAATTACAATTTATTTGTCATACGTGTTG-GTGGTGTCAAATATGTAATGGACACC-------AGTACAGACATTCGA
TCTATTTGGATAAGCTCTTGGGATCAATGGTACTAACTTATGAATGGTTTCTTGCTCAAGTAGGTTGACTTCTCAGGCAT
GGTGGATGATAAATTCCTCGAGCGACTGGGCATAGAGAAGGGTACTAGAAAGGTCGTTAACCATGAGGAGAGGGGACGGG
TCTTGCGTGCCATGGATGGCTGCACCTACAAGGCCGCTGCTGGAGGCTCACTGTCCAACTCGCTCGTGGCTCTAGCAAGG
CTTGGTAGTAGTCGGGCCAGCAGCTACCCTGAGCTTAGAATAGCAATGGCTGGCAGTGTGGGCAGTGACCCACTTGGTAG
TTTCTATAGGT-AAATTCACTAATCAGACAATATCCTGACTGCCTTTGATCTTGTTGTACTATTGCTACCAATAAGGCTT
TTGAACATTGTCTGACATCAAACTG---TTTGGATCACCCTGCTAGGCAAAAGTTGCATCGTGCGAATGTGCAATTCTTG
TCCAAGCCGGTCAAAGATGGGACTACTGGGACTGTGATTGTTCTAACAACTCCAGATGCACAGCGAACTATGCTTGCATA
CCAGGTTAGTTTCTTCACTAATGGCTTT-CCTGTTCTACGATCA-TTGGTAAACTTGTCCGGGTTACGAAGTATACTTAG
ACAAAAGTTTATGTGTTCTTTACTCTTTGGATACTTCGGAGTTG------TGC------CTTCCTGGAAATGTAGCAATT
CACTATTTGGCTTCTTAAGAGTGTATCCATATATTTGAATAACTATGCATGGTCTTATTTGAATTATGGATATAGCATTG
AGAACATCCATGTCATATCAATTTTTCCTTGGACAAGTACAATTTATTTTATTGGCCATTTATGTAGAGATTCTCCTGGC
TCTACCTTGTTCTCTAATGATGCCTTGTAACTTGTCTTGCAGGGTACATCTTCAACTTTGGCTTATGATTCAGACTTGGC
AGAGATAGTATCCAAGTCAAATCTACTGATAGTGGAAGGGTACCTATTCGAATTTAGTCATACAATTGAAGCCATCAAGC
AGGCATGTGAAGATGCTAAGAAGAATGGTGCACTTATTGCTGTTTCGGCATCAGATGTGTCATGCATCAAGCGTTGCCAC
AGTGATTTTTGGTGAGACTAGCCTCCGTGCGGAAGATTTCCTGTTACTATGGCACTTGCAATTATCTTGTCCCAGTTGCA
CACACTCTACAGTC-ATAAGTCATCTTTCATTTCCGTTCAAGTAACAAGAGGTCTGAGTTATAAATCAGGAATAAC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------TATGCTTTTTTG
TGATTGCAAGTGTACATTTGCCCCA-------TATTATGGTAGTATAGTGCTATGTAATTCCCAGCCGTACTAACTCTGG
TCCTAAACATTTTCAGGGATATTGTAGGAAACTATGCGGACATATTGTTCGCCAATGCCAACGAAGCAAGGGCGTTCTGC
GAGCTAACTTCAGAAGAGAGCACGGTGTCAGCTGCGAGATACTTGAGCCATTCTATTCCTCTAGTATCCGTTACCGATGG
TATGCACGGTTCCTACATCGGTGTGAAAGGTGAAGCAATATACATCCCTCCACCGGCATGTATACCTGTGGACACCTGCG
GAGCTGGTGATGCATACGCATCAGGAATCCTGTACGGTATCCTCCGGGGTGCGTCAGACTTGAAGGGCATTGGCCTGCTG
GCTGCCCAGGTAGCTGCTGTTGTCGTCGGGCAGCAAGGCACACGCCTGAGGGTTAAGGATGCTGACAGATTGGCTGAATC
GTTCGAGTTCCACCTTGACAACTTGGAGTTCTGTTCAGATGCTGGAACGGACCAGGTTCCCAACTTATGATATTTCCTCC
CCCTCAAGTCCCAAGTCCTCGACAGGCGGCGGCGATGGGAACTACCGAGGGCCGAAAAGGGCCGTGCCCCCTTCTCTAGA
AGATCTCTTAAGCGATTGCTTAGTTTTACCACTCAGACTCAGGTTCTATATAAA-TGCTAAACCAGCACCTCCTTCGAAC
AGCAAAATGCTAGAAGGGTT-----CATCAGATTGATGCCCCTTCAACTTCAAGCCCGG-CGCGACAGGTCCTAGGCACA
TTCACTTGTATATAGCATCTCATTCCTTTAGTCCTAGCTCTTTGTCAGGCCTCTCGGCCTCTGTCACCATCCCATTACTT
ACATTTTTGCACTGCAAGGATGCTACATACTCCGACTTTTGGCCGAGCACATGGGGTATTTTTATGTCG---AAGGAGCA
TGATATCATACGTTTGGCTGTAATGTATAATGCACAGCCGAAAGACAATTGCCGTCTTGGTCTAGAATGTGAATAAACTT
CTTTCGGCAGCTCCTGTTGTCCACTGCC------------CAGAGGGGATATGCTTATCACCAAAACTGTAATGCGGTCG
----TCCGACTTTGTTGGATGGGGATTCGA------TGTGGTTGGGTGGAACGTCGCCTTCAGGAGCGAAAGGTATAATA
TCTCGAGCTA--TTAGTCAGAGCTGCACTGCAACCAAGTGCAGTTCAGTGACCCAGATTCTCCTCTTTCTTGGTAGCCTA
TATATATATATGCTACTTGTTCTGCTAGCTTTGTTTCTA---GCTTGTTAATTTTTTTGGATGCTGCGTGGCGTGGAGCA
CACGTATGCTTGCTTGTTTGCAGTGCCATTGCTTGTTT---------GCCACCTGACTGTAAAATGTTTCCCTATAGATA
CGTGTCGACCTGCTGAGCCATTGCCTCGAACAGTTGGCGAGAGCTGTAGACTGTAGAGTAT-------ATAGCACCATTT
GAGGAGCTCCACCCCATGATAAAGAAAA-GTTTTACATAT-------------------------
>chr1A_9
--------GTCTTGTGACGATGACCTCTTTTGGATGAATTATGCTTGTTTAATCTCAATTTGAAATTTTGAACTTCTAAC
TTTGATATGTATTGGAATTGTGAGGATATGATCATATTTTTTTGAATTCTTGTCCGCCCATTTATTTATCACCACTTTGG
TCTTTTATTAGTCAATGGTTTATAGATGAGAGGACACCCTAACAATATCGATTTAACATTCCATTATCGAATCTCCTAAA
TTGGAAACAGGAAAAGTAATCGAAATCTTGTGCCAAGGGGCCATACGAAATTCACTCGTGATAAATCCCGATGATAGTTT
GAATGTGAAGAAGAGATATATATAGCCAAATAAAAGGTAGGCAAGCAATTTTAGACTTGATGTTGGAGAAGAGAAATGAT
TCCTAAGACTCATCCCTTCTATACATAAAATTGCTTTTTGATCATCATTTTTGGGTAACCTACCAAAGATACTCTTACCG
ACTGCCATAACTCAAGGCATGAGCAAATGCCATAGTTAGGTTT-ATGATTTGTGATCCTGTAACGAGGAGAGGACTAGGA
CACCGATGTATA------------------TAGTCAGGAGCAACGTTACATCCATGACTGACTTTTATGGAGTTGCGTTT
TACATGTTTCTATGGCAAGTTTTGGGAAATGGAGCCCCCCCACACTTGAAATTCGGAGTGAAGAAAAAGGGTTTGTAGG-
---------ACTTTTCATTGGATTCACTCATAAATTGTATCCACTCTGATTTAAAACAAGTGTCGTAATTTTAAACTAAA
GTCCAAAATAAATGTCACAGATTTAAACTAATGTTAGGAGGAAGTAGCAATTTCGGTATAGATTTTTCTTATAATAGTGT
GGTGTATTTTTGTCATGCGTTTACCGAAGATTTCCTAGAAAAGCTAGGAGCATGTGGTAAATTCTTATCCGGTCGGA-CC
GGCAACATAAACTTGCTTCCGTTTTCTCTTTCTCAGCCTGGCCGTGGCCGGCCGCGCGAGCTCCACGTCCTCTTCTCCCT
CCCCCACACCCTAATCCACTCCATTTCCCTGCTCCGAACACGGCACGGCTCCTCCTCTCCCACTCCCATCCTCCTCTTCA
ATGGCGCTCGCCTCCACCACCGCCTCCCGCCTCATCAGCCGCCGCCTCGCCGCTCCCCTCCCGCCTCCTCCTTCCTCTTC
CTGCGCCGCGCCGCGAGGAGGAGCCAGGCCAGGGCTGCGCCGGTTCGCGGTGCGCTGGGAGGGCAGGCCGAGGGCGCTCC
TGGGAGGATTCTCGGACGCCGATGAAGATGCCAGCGACGACGAGGACGAGGAGGATGGCCCGGGCGCGCTCAGCGGTGGG
CCGCCGAGGCAGGAGCAGGAGTGCGAGGACGTCATCGAGCTCGCCGCCGCTGCCTTCTCCGGGCCCGAGCGCTGGGACGT
GCTCGGACTCGGCCAGGCCATGGTGCGCACAT-----------TCTTACCGT-------------TGCTAATCTGCAATC
AACCAGTAGCTTCAAGCCTTCGACAT------------------AACGTAGGGCATTGACT-GGTTAGGACTCTGACAAG
ATTTTGGTGTTGTTTTTACTGTTAATGATTTAACATTTCGACTTGTGCAAGTTTGACGGTGT-------TTACTAATGAC
CTGAATGTTTCCTCGATGTTTGGTCGTG----------------------------------------------------
---CTACTATATTGTTTC----------TAAGT--AAATGTGGAATTGAAGGTGGTTTCCCGATGCCAAATTGCAAGAAA
CCAGTAGCTGGGAAAACAAACATTGACCCCTTCCATGCACCACAAATGCAGAATACACATT-GCTAGTAATTGGTGTGAA
TAGGCTGTGGTGGCTGTCACTAGTGTCAGGGATTCGTCTTGTGGCCTATCTCGT-TGATTATTTGCTGCTTGTATG--TG
CACAAATACAATTTATTCGTCAT--GTGTTG-TTGGTGCCAAATATGTAATGTACACCAGTACAGAGTACAGACATTCGA
TCTATTTGGATAAGCTCTTGGGATCAATGGTACTAACTTATGAACGGTTTCTTGCTCAAATAGGTTGACTTCTCAGGCAT
GGTGGATGATGAATTCCTCGAGAGACTGGGCATAGAGAAGGGTACTAGAAAGGTCGTCAACCATGAGGAGAGGGGACGGG
TCTTGCGTGCCATGGATGGCTGCACCTACAAGGCCGCTGCCGGAGGCTCATTGTCCAACTCGCTTGTGGCTCTAGCAAGG
CTTGGTAGTAGTCGGGCCAGCAGCTACCCTGAGCTTAGAATAGCAATGGCCGGCAGTGTGGGCAGTGACCCACTTGGTAG
TTTCTACAGGTAAAATTCACTAA---GACAATATCTTCACTGCCTCTGATCTTGTTGTACTATTGCTACCAGTAAGGCTT
TTGAACATTGTCTGACATCAAACTGTTGTTTGGATCATGCTGTTAGGCAAAAGCTGCATCGTGCTAATGTGCAATTCTTG
TCCAAGCCGGTCAAAGATGGGACTACTGGCACTGTGATTGTTCTAACAACTCCAGATGCACAGCGAACTATGCTTGCTTA
CCAGGTTAGTTTCTTCACCAACGGCTTT-CTGCTTTTTACAATAGTTGGTAAACTTGTCCAGATTATGATGTATCGTTAG
ACATAA-TTTATATGCTCTTTAGTCTTTGGGTACTTCGGAGTTG------TGCTAATGCCTTCCGGAAGATGCATCAATT
CACTGTTTGGCTTCTTAAGACCGTATATTATACA-------------CATGATCTTATTTGAAGTACG--TATGGCATTG
TGAACATCCATCTTATATCAAAGATTCAATGGACAAGTATAATTTATTTTGCTGGCCATTTATGTAGAAATACTCCTGGT
ACTACCTTATTCTCTAATGATGCCTTGTAACTTGTCTTGCAGGGTACCTCTTCAACTTTGGCTTACGATTCAGACTTGGC
AGAGATAGTATCCAAGTCAAATTTACTGATAGTGGAAGGGTACCTTTTTGAGTTTAGTCATACAATTGAAGCCATCAAGC
AGGCATGTGAAGATGCTAAGAAGAATGGTGCACTTATTGCTGTTTCGGCATCAGATGTGTCATGCATCAAGCGTTGCCAC
AGTGATTTTTGGTGAGACTAACCTCCGGGC----GATTTCCTGTTTCTATGGCACTTGCAATTATCTCGTCCCAGTTGCA
CATCCTCTTCAGTCTATAAGTCATCCTCCATTTCCTTTTAATTAACAAGAGGTCCATGAG-TAGATCAGGGAAAGGTGTT
GCTTTT--ACTTGCTTCCTACGGTGGTGATGACATGTGCCTGCTCTAGAAAATGCTACATCAGTGGGCTACATGACATGG
-------------TAGTTCTATGTGTTGATCATGTGACTGACATCATCAACAGAGCCATATAGTTCTGTATGCTTGTTTG
TGATTGCAAGTGTATTTTTGCTCCACGTTCTCTATTATGGTAGCACAATGCTCTGTATATCCCAGCACCACTGACCTCGG
TCCTAAACATTTTCAGGGACATCGTAGGGAACTATGCAGACATACTGTTCGCCAATGCCAACGAAGCAAGGGCATTCTGC
GAGCTAACCTCAGAAGAGAGCACGGTCTCAGCTGCGAGATACTTGAGTCATTCTATCCCTCTAGTGTCTGTTACAGATGG
TATGCATGGTTCTTACATCGGTGTGAAAGGTGAAGCAATATACATCCCCCCGCCGGCATGTATACCTGTGGACACCTGCG
GAGCTGGTGATGCATACGCATCAGGAATCCTGTACGGTATCCTCCGGGGCGCATCGGATTTGAAGGGCATCGGCCTGCTG
GCGGCCCAGGTAGCCGCTGTTGTCGTCGGGCAGCAAGGCACGCGCCTGAGGGTTAAGGATGCTGACAGGTTGGCTGAATC
GTTCGAGTTCCACCTTGACAACTTGGAGTTCTGTTCAGATGCTGGAACGGACCAGGTTCCCAACTTATGATTTTTCCTCC
CCCTCAAGTCCCAAGTCCTCGACAGGCGGCGACGATGGGAACTACTGGGGGCCGAAGTGGGCTGTGCCCCCTTCTCTAGA
AGATCTCTTGAGCAATTGTTTAGTTTTACCACTCAGACTCAGGTTCTATATAAA-TGCTAAACCAGCATCTCCTTCCTTT
GAAAAGCATACTAGCAGGTAAATTCCATCAGATTGCCGGCCCTTCAACTTCAAGCCCCGCCGCGACAGGTCGTAGGCACA
TTCACTTGTATATAGCAGCTCATTCCTTTAGTCCTAGCTCATTGTCAGCTCTCTCGGCCTCTGTCACCATTTCATCACTT
ACATTTTTGCACGGGAAGGATGCTACATACAT-GATACAT-------------GGGTGTTTTTATTTCGAAAAAGGAACA
TGATATCATATGTTTGGCTGTAATGTAATG----CAGTCGAAAGACAAATGCCATCTTGGTCTAGAATGTGAATAAACTT
CTTTCGGCGGAACCCGTGTGTCCACTGACCGAATTCGCGTCAAAGGGGATATGCTTATCACCAAAACTGTAATGCGATCG
ATCGTCCGACTTTGTTGGATGGGGATTCGA------TGTGGTTGGGTGGAACGTCGCCTTCAGCGGCGAAAGGTATAATA
TCTTGAGCTATACTAGTCAGAGCTGTACTGCAACCAAGTGCAGTTCAGTGCCCCAGATTCTCTTCTTTCTGGTAGCC---
TATATATATATGCTACTTGTTCTGCTAGCTTTGTTTCTACTAGCTTGTTAAATTTT-TGGATGCTGCGTGGCGTGGAGCA
CACGTATGCTTGCTTGTTTGCAAACTTTTCTTGTTTGATCTGGGAACGCCACCCGACTGTAAAATGTTTCCTTATAGATA
CGTGTCGACCTGCTGAGCCATTGCCTCGAACAGTTGGCGAGAGCTGTAGACTGTAGAGTTG-------TTAGCACCATTT
GAGGAGCTCCACCCCATGATAAAGAAAA-GTTTTACATATATACCCCCTCTGTAAATTAATATAA
>SNPs
SS----S------------------------S-----------S---------------------S--------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S--------------------------S--------------------------------
--------------------------------------------------------------------------------
------------------S--------------------------S-------------------S--------------
-------------------------S------------------------------------------------------
----------------------------------------------S-----S---------------------------
-----SSSS-S-SSSSSS-------------------S-----------------------------------------S
SSSSSSSSS-------------------------------------------S-------S-------------------
S-------------------S-------------------------------------------S---------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
---------------------S----------------------------------------------------------
---------------S----------------------------------------------------------------
----------------------------------SSS-S--SS--SSSSSSSSSSSSSSSSSSSS-S-S---------S-
S-S---------S--SSSSSS--SS-SSSSSSSSSSSSSSSSSS-----------------S--------------S--S
--------------S---S---S-S-----S--------S-----S----------S----SSSSSSSS------S----
-------------SSS------------SS-----SSS---------S--------------S--S------------S-
---S------------S------------S-SSSS---S--S---S-----S--S-S--------------S-SSSS-SS
SS------------------------------------------------------------------------------
-----------------S----------SS---S-S---S----SSSSSSSSSSS------------------SSSSS--
S-S--------S-------S--S--S-----S---------------------S--S--------S---SSSSSSSSSS-
-----------S-------S------S--------------------S--------------------------------
------S------------------S-------------------S--S-------------------------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------S-----
----------------------S--S--------S------SS-S---------S------------S---------S--
---S-----S---------------S------------------------------------------------------
-----------S--------------------------------------------------S-----------------
----------------------------S------------------------------S--------S-----------
---------------S---------------------S------SSSSSS------------------------------
--S----------------------------------------------SS-------------------S---S-----
----S---------------------S--------------S----S--------S------------------------
-----------------S------S-------------------------------------------------------
S-----------------------------------------------------------------------------S-
----------------------------------------------S---------------------------------
------------------------------S--S------------------------------------S-SSS-S---
-----S-------------------S------------S--S---------S------------------------S-S-
-SS---SS------------S--S---------S--S-S-------SS---S--------S------------SSSSSSS
SSSSSSSSSSSSS-------------------------------------------------------------------
-------------------------------------------------------------------------------S
-------------------------------------------------------------S------------------
-----------S--------S--SS-------S-----------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
-----S---------------------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
------------------------------------------------------S--S---------------------S
---S------------------------------------------------------S---------------------
----------------------------------------------------------------------------S---
--------------------------------S------S----------------------------S-----------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
-----------------------SS-SS--SSSSSS-------------S------------------------------
-----------------------------------------------------------------------S--------
---------SS---------------------------------------------------------------------
---------------------------------------S-S--------------------S------S----S-S---
-----------------------S----------------------------------SS-SSSSSSS------------
---S------------------------S---------------S----S--S---S--------
>forward_607
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CCTAGTCAGGAGCAGCGTG---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>reverse_1475
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CTGTGTCCCTCGCCTTTCTT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>forward_1112
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CCTCTCCCACTCCCATCCC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>reverse_2442
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TGCCCTGATCTTGCTGTACT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>forward_1494
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CTGTGTCCCTCGCCTTTCTT--------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>reverse_3704
--------------------------------------------------------------------------------
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-----------------------CATGTCAGCGGCGAGATACT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
>forward_3394
--------------------------------------------------------------------------------
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--------------TTCCTATGGCGGTGATGACG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------------------------------------------------
>reverse_4920
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------TTAGGAACGCCACCTGACTG---------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------
