Multiple sequence alignment - TraesCS1D01G194200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G194200 chr1D 100.000 3668 0 0 1 3668 270229393 270233060 0.000000e+00 6774.0
1 TraesCS1D01G194200 chr1A 92.239 2474 76 34 663 3073 343674036 343676456 0.000000e+00 3398.0
2 TraesCS1D01G194200 chr1A 81.930 570 45 34 18 546 343673470 343674022 2.620000e-116 429.0
3 TraesCS1D01G194200 chr1A 83.541 401 19 11 3121 3491 343676540 343676923 7.590000e-87 331.0
4 TraesCS1D01G194200 chr1B 95.376 1276 42 10 1668 2943 344002030 344003288 0.000000e+00 2013.0
5 TraesCS1D01G194200 chr1B 91.061 1018 36 16 663 1661 344001003 344001984 0.000000e+00 1325.0
6 TraesCS1D01G194200 chr1B 81.972 355 33 18 217 559 344000669 344001004 4.670000e-69 272.0
7 TraesCS1D01G194200 chr1B 88.889 171 8 8 18 186 344000443 344000604 2.230000e-47 200.0
8 TraesCS1D01G194200 chr1B 87.943 141 11 3 3111 3251 344003843 344003977 1.050000e-35 161.0
9 TraesCS1D01G194200 chr5D 78.404 213 35 10 1752 1960 381036627 381036422 1.070000e-25 128.0
10 TraesCS1D01G194200 chr5B 78.302 212 37 8 1752 1960 457134689 457134484 1.070000e-25 128.0
11 TraesCS1D01G194200 chr5B 83.333 78 9 4 1891 1966 535700252 535700327 6.570000e-08 69.4
12 TraesCS1D01G194200 chr5A 78.302 212 37 8 1752 1960 481903720 481903515 1.070000e-25 128.0
13 TraesCS1D01G194200 chr5A 91.379 58 3 2 1016 1072 645726285 645726341 1.090000e-10 78.7
14 TraesCS1D01G194200 chr4B 76.378 254 49 10 1717 1966 643311326 643311080 3.850000e-25 126.0
15 TraesCS1D01G194200 chr4B 77.333 225 36 11 1750 1970 103056202 103055989 6.430000e-23 119.0
16 TraesCS1D01G194200 chr3D 76.889 225 37 12 1750 1970 515776707 515776920 2.990000e-21 113.0
17 TraesCS1D01G194200 chr3A 76.786 224 39 11 1750 1970 650056445 650056658 2.990000e-21 113.0
18 TraesCS1D01G194200 chr4D 75.000 252 52 9 1719 1966 500023997 500023753 5.010000e-19 106.0
19 TraesCS1D01G194200 chr3B 76.000 225 39 12 1750 1970 678548568 678548781 6.480000e-18 102.0
20 TraesCS1D01G194200 chr2A 86.747 83 8 3 3584 3665 723883552 723883472 5.050000e-14 89.8
21 TraesCS1D01G194200 chr6A 82.075 106 13 5 1751 1853 599622018 599622120 6.530000e-13 86.1
22 TraesCS1D01G194200 chr2B 73.991 223 45 10 1749 1966 794867064 794866850 1.090000e-10 78.7
23 TraesCS1D01G194200 chr7D 79.787 94 19 0 3571 3664 107404282 107404375 6.570000e-08 69.4
24 TraesCS1D01G194200 chr4A 77.778 108 16 5 1751 1851 744524718 744524612 3.960000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G194200 chr1D 270229393 270233060 3667 False 6774.0 6774 100.000000 1 3668 1 chr1D.!!$F1 3667
1 TraesCS1D01G194200 chr1A 343673470 343676923 3453 False 1386.0 3398 85.903333 18 3491 3 chr1A.!!$F1 3473
2 TraesCS1D01G194200 chr1B 344000443 344003977 3534 False 794.2 2013 89.048200 18 3251 5 chr1B.!!$F1 3233

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
587 649 0.032952 TTCTTACTCACCGTGCGCTT 59.967 50.0 9.73 0.0 0.00 4.68 F
645 707 0.039618 CCCTGTTAGTTGGCCACCAT 59.960 55.0 3.88 0.0 31.53 3.55 F
652 714 0.188342 AGTTGGCCACCATTCCTGTT 59.812 50.0 3.88 0.0 31.53 3.16 F
1915 2057 0.250727 GCTGGTGTTCTACAAGGGCA 60.251 55.0 0.00 0.0 30.41 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1559 1662 0.035458 AAAAGCGAGAGGGGTGACTG 59.965 55.0 0.00 0.0 0.0 3.51 R
1560 1663 0.035458 CAAAAGCGAGAGGGGTGACT 59.965 55.0 0.00 0.0 0.0 3.41 R
2500 2651 1.020861 ATGCATTGAGAACTCGCGCA 61.021 50.0 8.75 12.4 35.9 6.09 R
3575 4258 0.036388 GTCTTCCGCATCCTTGTCCA 60.036 55.0 0.00 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 0.786581 GTACGCGGCTGATGATGATG 59.213 55.000 12.47 0.00 0.00 3.07
52 53 0.673437 TACGCGGCTGATGATGATGA 59.327 50.000 12.47 0.00 0.00 2.92
53 54 0.034476 ACGCGGCTGATGATGATGAT 59.966 50.000 12.47 0.00 0.00 2.45
61 62 6.401903 GCGGCTGATGATGATGATAAACTTAG 60.402 42.308 0.00 0.00 0.00 2.18
112 113 0.460987 GGATCTTGGTGACAGCGGAG 60.461 60.000 0.00 1.12 44.54 4.63
137 138 5.070981 TGAACCCATATTCAAAACCAAAGCA 59.929 36.000 0.00 0.00 35.65 3.91
139 140 3.925913 CCCATATTCAAAACCAAAGCACG 59.074 43.478 0.00 0.00 0.00 5.34
142 143 5.571357 CCATATTCAAAACCAAAGCACGTAC 59.429 40.000 0.00 0.00 0.00 3.67
143 144 4.640789 ATTCAAAACCAAAGCACGTACA 57.359 36.364 0.00 0.00 0.00 2.90
144 145 3.684103 TCAAAACCAAAGCACGTACAG 57.316 42.857 0.00 0.00 0.00 2.74
145 146 3.011119 TCAAAACCAAAGCACGTACAGT 58.989 40.909 0.00 0.00 0.00 3.55
146 147 4.190001 TCAAAACCAAAGCACGTACAGTA 58.810 39.130 0.00 0.00 0.00 2.74
147 148 4.817464 TCAAAACCAAAGCACGTACAGTAT 59.183 37.500 0.00 0.00 0.00 2.12
148 149 4.742438 AAACCAAAGCACGTACAGTATG 57.258 40.909 0.00 0.00 46.00 2.39
158 159 4.605594 GCACGTACAGTATGAAACAAAACG 59.394 41.667 6.81 0.00 39.69 3.60
173 174 1.385528 AAACGGCACTTTCGAACCTT 58.614 45.000 0.00 0.00 0.00 3.50
174 175 0.661020 AACGGCACTTTCGAACCTTG 59.339 50.000 0.00 0.00 0.00 3.61
175 176 1.082104 CGGCACTTTCGAACCTTGC 60.082 57.895 13.83 13.83 0.00 4.01
177 178 1.082104 GCACTTTCGAACCTTGCCG 60.082 57.895 11.92 0.00 0.00 5.69
179 180 2.258726 ACTTTCGAACCTTGCCGCC 61.259 57.895 0.00 0.00 0.00 6.13
180 181 3.308878 CTTTCGAACCTTGCCGCCG 62.309 63.158 0.00 0.00 0.00 6.46
206 233 4.814900 GCCTCGCGATTCAGAAGA 57.185 55.556 10.36 0.00 0.00 2.87
208 235 0.926846 GCCTCGCGATTCAGAAGAAG 59.073 55.000 10.36 0.00 37.14 2.85
210 237 2.881074 CCTCGCGATTCAGAAGAAGAA 58.119 47.619 10.36 0.00 37.14 2.52
211 238 3.452474 CCTCGCGATTCAGAAGAAGAAT 58.548 45.455 10.36 0.00 37.14 2.40
214 241 5.051374 CCTCGCGATTCAGAAGAAGAATAAC 60.051 44.000 10.36 0.00 37.14 1.89
215 242 4.499399 TCGCGATTCAGAAGAAGAATAACG 59.501 41.667 3.71 0.00 37.14 3.18
216 243 4.509891 GCGATTCAGAAGAAGAATAACGC 58.490 43.478 0.00 0.00 39.65 4.84
217 244 4.032900 GCGATTCAGAAGAAGAATAACGCA 59.967 41.667 13.50 0.00 42.90 5.24
305 349 3.800628 GCAAGCAGCGAAAGGAAAT 57.199 47.368 0.00 0.00 0.00 2.17
395 439 1.374125 GGTTTTGGAATGGCGTGCC 60.374 57.895 3.30 3.30 0.00 5.01
418 462 4.116328 CGACCTTCTCGCCTCGCA 62.116 66.667 0.00 0.00 35.06 5.10
419 463 2.261671 GACCTTCTCGCCTCGCAA 59.738 61.111 0.00 0.00 0.00 4.85
420 464 1.807573 GACCTTCTCGCCTCGCAAG 60.808 63.158 0.00 0.00 0.00 4.01
421 465 2.262915 CCTTCTCGCCTCGCAAGT 59.737 61.111 0.00 0.00 39.48 3.16
422 466 1.807573 CCTTCTCGCCTCGCAAGTC 60.808 63.158 0.00 0.00 39.48 3.01
423 467 1.214062 CTTCTCGCCTCGCAAGTCT 59.786 57.895 0.00 0.00 39.48 3.24
425 469 1.524008 TTCTCGCCTCGCAAGTCTCA 61.524 55.000 0.00 0.00 39.48 3.27
426 470 1.080501 CTCGCCTCGCAAGTCTCAA 60.081 57.895 0.00 0.00 39.48 3.02
427 471 0.667487 CTCGCCTCGCAAGTCTCAAA 60.667 55.000 0.00 0.00 39.48 2.69
428 472 0.944311 TCGCCTCGCAAGTCTCAAAC 60.944 55.000 0.00 0.00 39.48 2.93
429 473 1.869690 GCCTCGCAAGTCTCAAACC 59.130 57.895 0.00 0.00 39.48 3.27
431 475 0.035458 CCTCGCAAGTCTCAAACCCT 59.965 55.000 0.00 0.00 39.48 4.34
432 476 1.543429 CCTCGCAAGTCTCAAACCCTT 60.543 52.381 0.00 0.00 39.48 3.95
433 477 2.222027 CTCGCAAGTCTCAAACCCTTT 58.778 47.619 0.00 0.00 39.48 3.11
434 478 2.218603 TCGCAAGTCTCAAACCCTTTC 58.781 47.619 0.00 0.00 39.48 2.62
458 516 4.557205 CTCCTCTATATAAACGGCACCAC 58.443 47.826 0.00 0.00 0.00 4.16
471 529 1.966451 CACCACGCCCTTCACTTCC 60.966 63.158 0.00 0.00 0.00 3.46
483 541 0.121197 TCACTTCCTCCCTCCCCAAT 59.879 55.000 0.00 0.00 0.00 3.16
484 542 0.548510 CACTTCCTCCCTCCCCAATC 59.451 60.000 0.00 0.00 0.00 2.67
485 543 0.624795 ACTTCCTCCCTCCCCAATCC 60.625 60.000 0.00 0.00 0.00 3.01
486 544 0.624500 CTTCCTCCCTCCCCAATCCA 60.625 60.000 0.00 0.00 0.00 3.41
487 545 0.624500 TTCCTCCCTCCCCAATCCAG 60.625 60.000 0.00 0.00 0.00 3.86
488 546 2.761465 CCTCCCTCCCCAATCCAGC 61.761 68.421 0.00 0.00 0.00 4.85
489 547 3.089874 TCCCTCCCCAATCCAGCG 61.090 66.667 0.00 0.00 0.00 5.18
497 555 2.203126 CAATCCAGCGCCTCCTCC 60.203 66.667 2.29 0.00 0.00 4.30
498 556 2.366167 AATCCAGCGCCTCCTCCT 60.366 61.111 2.29 0.00 0.00 3.69
509 567 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
510 568 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
511 569 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
513 571 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
514 572 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
519 577 2.197324 CCTCCTCCTCCTCCTCCG 59.803 72.222 0.00 0.00 0.00 4.63
523 581 4.465446 CTCCTCCTCCTCCGGCCA 62.465 72.222 2.24 0.00 0.00 5.36
526 584 3.237741 CTCCTCCTCCGGCCATCC 61.238 72.222 2.24 0.00 0.00 3.51
527 585 4.880426 TCCTCCTCCGGCCATCCC 62.880 72.222 2.24 0.00 0.00 3.85
555 617 2.499205 CCGCCGCCAACATCTCTA 59.501 61.111 0.00 0.00 0.00 2.43
556 618 1.592669 CCGCCGCCAACATCTCTAG 60.593 63.158 0.00 0.00 0.00 2.43
557 619 2.240500 CGCCGCCAACATCTCTAGC 61.241 63.158 0.00 0.00 0.00 3.42
558 620 1.144936 GCCGCCAACATCTCTAGCT 59.855 57.895 0.00 0.00 0.00 3.32
559 621 0.389391 GCCGCCAACATCTCTAGCTA 59.611 55.000 0.00 0.00 0.00 3.32
560 622 1.604185 GCCGCCAACATCTCTAGCTAG 60.604 57.143 15.01 15.01 0.00 3.42
561 623 1.604185 CCGCCAACATCTCTAGCTAGC 60.604 57.143 16.35 6.62 0.00 3.42
562 624 1.339610 CGCCAACATCTCTAGCTAGCT 59.660 52.381 23.12 23.12 0.00 3.32
563 625 2.606795 CGCCAACATCTCTAGCTAGCTC 60.607 54.545 23.26 0.61 0.00 4.09
564 626 2.288763 GCCAACATCTCTAGCTAGCTCC 60.289 54.545 23.26 0.00 0.00 4.70
565 627 2.961741 CCAACATCTCTAGCTAGCTCCA 59.038 50.000 23.26 8.00 0.00 3.86
566 628 3.243704 CCAACATCTCTAGCTAGCTCCAC 60.244 52.174 23.26 0.00 0.00 4.02
567 629 2.593026 ACATCTCTAGCTAGCTCCACC 58.407 52.381 23.26 0.00 0.00 4.61
568 630 2.176798 ACATCTCTAGCTAGCTCCACCT 59.823 50.000 23.26 1.54 0.00 4.00
569 631 3.230134 CATCTCTAGCTAGCTCCACCTT 58.770 50.000 23.26 0.00 0.00 3.50
570 632 2.938838 TCTCTAGCTAGCTCCACCTTC 58.061 52.381 23.26 0.00 0.00 3.46
571 633 2.512056 TCTCTAGCTAGCTCCACCTTCT 59.488 50.000 23.26 0.00 0.00 2.85
572 634 3.053245 TCTCTAGCTAGCTCCACCTTCTT 60.053 47.826 23.26 0.00 0.00 2.52
573 635 4.166337 TCTCTAGCTAGCTCCACCTTCTTA 59.834 45.833 23.26 0.00 0.00 2.10
574 636 4.208746 TCTAGCTAGCTCCACCTTCTTAC 58.791 47.826 23.26 0.00 0.00 2.34
575 637 3.108847 AGCTAGCTCCACCTTCTTACT 57.891 47.619 12.68 0.00 0.00 2.24
576 638 3.028130 AGCTAGCTCCACCTTCTTACTC 58.972 50.000 12.68 0.00 0.00 2.59
577 639 2.761208 GCTAGCTCCACCTTCTTACTCA 59.239 50.000 7.70 0.00 0.00 3.41
578 640 3.429684 GCTAGCTCCACCTTCTTACTCAC 60.430 52.174 7.70 0.00 0.00 3.51
579 641 1.903183 AGCTCCACCTTCTTACTCACC 59.097 52.381 0.00 0.00 0.00 4.02
580 642 1.404315 GCTCCACCTTCTTACTCACCG 60.404 57.143 0.00 0.00 0.00 4.94
581 643 1.893801 CTCCACCTTCTTACTCACCGT 59.106 52.381 0.00 0.00 0.00 4.83
582 644 1.616865 TCCACCTTCTTACTCACCGTG 59.383 52.381 0.00 0.00 0.00 4.94
583 645 1.429463 CACCTTCTTACTCACCGTGC 58.571 55.000 0.00 0.00 0.00 5.34
584 646 0.038526 ACCTTCTTACTCACCGTGCG 60.039 55.000 0.00 0.00 0.00 5.34
585 647 1.352156 CCTTCTTACTCACCGTGCGC 61.352 60.000 0.00 0.00 0.00 6.09
586 648 0.388649 CTTCTTACTCACCGTGCGCT 60.389 55.000 9.73 0.00 0.00 5.92
587 649 0.032952 TTCTTACTCACCGTGCGCTT 59.967 50.000 9.73 0.00 0.00 4.68
588 650 0.666274 TCTTACTCACCGTGCGCTTG 60.666 55.000 9.73 0.00 0.00 4.01
589 651 0.666274 CTTACTCACCGTGCGCTTGA 60.666 55.000 9.73 5.18 0.00 3.02
590 652 0.942410 TTACTCACCGTGCGCTTGAC 60.942 55.000 9.73 0.00 0.00 3.18
591 653 2.758770 TACTCACCGTGCGCTTGACC 62.759 60.000 9.73 0.00 0.00 4.02
594 656 4.373116 ACCGTGCGCTTGACCGAT 62.373 61.111 9.73 0.00 0.00 4.18
595 657 3.554692 CCGTGCGCTTGACCGATC 61.555 66.667 9.73 0.00 0.00 3.69
596 658 3.554692 CGTGCGCTTGACCGATCC 61.555 66.667 9.73 0.00 0.00 3.36
597 659 2.125512 GTGCGCTTGACCGATCCT 60.126 61.111 9.73 0.00 0.00 3.24
598 660 2.167861 GTGCGCTTGACCGATCCTC 61.168 63.158 9.73 0.00 0.00 3.71
599 661 2.184322 GCGCTTGACCGATCCTCA 59.816 61.111 0.00 0.00 0.00 3.86
600 662 2.167861 GCGCTTGACCGATCCTCAC 61.168 63.158 0.00 0.00 0.00 3.51
601 663 1.215382 CGCTTGACCGATCCTCACA 59.785 57.895 0.00 0.00 0.00 3.58
602 664 0.389817 CGCTTGACCGATCCTCACAA 60.390 55.000 0.00 0.00 0.00 3.33
603 665 1.740380 CGCTTGACCGATCCTCACAAT 60.740 52.381 0.00 0.00 0.00 2.71
604 666 1.936547 GCTTGACCGATCCTCACAATC 59.063 52.381 0.00 0.00 0.00 2.67
605 667 2.677902 GCTTGACCGATCCTCACAATCA 60.678 50.000 0.00 0.00 0.00 2.57
606 668 3.599343 CTTGACCGATCCTCACAATCAA 58.401 45.455 0.00 0.00 0.00 2.57
607 669 3.912496 TGACCGATCCTCACAATCAAT 57.088 42.857 0.00 0.00 0.00 2.57
608 670 3.797039 TGACCGATCCTCACAATCAATC 58.203 45.455 0.00 0.00 0.00 2.67
609 671 3.197549 TGACCGATCCTCACAATCAATCA 59.802 43.478 0.00 0.00 0.00 2.57
610 672 4.191544 GACCGATCCTCACAATCAATCAA 58.808 43.478 0.00 0.00 0.00 2.57
611 673 4.194640 ACCGATCCTCACAATCAATCAAG 58.805 43.478 0.00 0.00 0.00 3.02
612 674 3.003068 CCGATCCTCACAATCAATCAAGC 59.997 47.826 0.00 0.00 0.00 4.01
613 675 3.875727 CGATCCTCACAATCAATCAAGCT 59.124 43.478 0.00 0.00 0.00 3.74
614 676 4.025061 CGATCCTCACAATCAATCAAGCTC 60.025 45.833 0.00 0.00 0.00 4.09
615 677 4.564782 TCCTCACAATCAATCAAGCTCT 57.435 40.909 0.00 0.00 0.00 4.09
616 678 4.914983 TCCTCACAATCAATCAAGCTCTT 58.085 39.130 0.00 0.00 0.00 2.85
617 679 5.319453 TCCTCACAATCAATCAAGCTCTTT 58.681 37.500 0.00 0.00 0.00 2.52
618 680 6.475504 TCCTCACAATCAATCAAGCTCTTTA 58.524 36.000 0.00 0.00 0.00 1.85
619 681 6.596888 TCCTCACAATCAATCAAGCTCTTTAG 59.403 38.462 0.00 0.00 0.00 1.85
628 690 4.035435 GCTCTTTAGCTAGCGCCC 57.965 61.111 9.55 0.00 45.85 6.13
629 691 1.443828 GCTCTTTAGCTAGCGCCCT 59.556 57.895 9.55 0.00 45.85 5.19
630 692 0.878086 GCTCTTTAGCTAGCGCCCTG 60.878 60.000 9.55 0.00 45.85 4.45
631 693 0.461961 CTCTTTAGCTAGCGCCCTGT 59.538 55.000 9.55 0.00 36.60 4.00
632 694 0.902531 TCTTTAGCTAGCGCCCTGTT 59.097 50.000 9.55 0.00 36.60 3.16
633 695 2.100916 CTCTTTAGCTAGCGCCCTGTTA 59.899 50.000 9.55 0.00 36.60 2.41
634 696 2.100916 TCTTTAGCTAGCGCCCTGTTAG 59.899 50.000 9.55 0.00 36.60 2.34
635 697 1.481871 TTAGCTAGCGCCCTGTTAGT 58.518 50.000 9.55 0.00 34.17 2.24
636 698 1.481871 TAGCTAGCGCCCTGTTAGTT 58.518 50.000 9.55 0.00 34.17 2.24
637 699 0.108138 AGCTAGCGCCCTGTTAGTTG 60.108 55.000 9.55 0.00 34.17 3.16
638 700 1.090052 GCTAGCGCCCTGTTAGTTGG 61.090 60.000 2.29 0.00 34.17 3.77
639 701 1.078708 TAGCGCCCTGTTAGTTGGC 60.079 57.895 2.29 0.00 41.85 4.52
640 702 2.530958 TAGCGCCCTGTTAGTTGGCC 62.531 60.000 2.29 0.00 42.29 5.36
641 703 2.033448 CGCCCTGTTAGTTGGCCA 59.967 61.111 0.00 0.00 42.29 5.36
642 704 2.332654 CGCCCTGTTAGTTGGCCAC 61.333 63.158 3.88 0.00 42.29 5.01
643 705 1.977009 GCCCTGTTAGTTGGCCACC 60.977 63.158 3.88 0.00 39.30 4.61
644 706 1.458486 CCCTGTTAGTTGGCCACCA 59.542 57.895 3.88 0.00 0.00 4.17
645 707 0.039618 CCCTGTTAGTTGGCCACCAT 59.960 55.000 3.88 0.00 31.53 3.55
646 708 1.549950 CCCTGTTAGTTGGCCACCATT 60.550 52.381 3.88 0.00 31.53 3.16
647 709 1.818674 CCTGTTAGTTGGCCACCATTC 59.181 52.381 3.88 0.00 31.53 2.67
648 710 1.818674 CTGTTAGTTGGCCACCATTCC 59.181 52.381 3.88 0.00 31.53 3.01
649 711 1.427368 TGTTAGTTGGCCACCATTCCT 59.573 47.619 3.88 0.00 31.53 3.36
650 712 1.818674 GTTAGTTGGCCACCATTCCTG 59.181 52.381 3.88 0.00 31.53 3.86
651 713 1.072266 TAGTTGGCCACCATTCCTGT 58.928 50.000 3.88 0.00 31.53 4.00
652 714 0.188342 AGTTGGCCACCATTCCTGTT 59.812 50.000 3.88 0.00 31.53 3.16
653 715 0.603065 GTTGGCCACCATTCCTGTTC 59.397 55.000 3.88 0.00 31.53 3.18
654 716 0.541764 TTGGCCACCATTCCTGTTCC 60.542 55.000 3.88 0.00 31.53 3.62
655 717 1.076549 GGCCACCATTCCTGTTCCA 59.923 57.895 0.00 0.00 0.00 3.53
656 718 0.324645 GGCCACCATTCCTGTTCCAT 60.325 55.000 0.00 0.00 0.00 3.41
657 719 1.106285 GCCACCATTCCTGTTCCATC 58.894 55.000 0.00 0.00 0.00 3.51
658 720 1.616725 GCCACCATTCCTGTTCCATCA 60.617 52.381 0.00 0.00 0.00 3.07
659 721 2.806434 CCACCATTCCTGTTCCATCAA 58.194 47.619 0.00 0.00 0.00 2.57
660 722 2.756760 CCACCATTCCTGTTCCATCAAG 59.243 50.000 0.00 0.00 0.00 3.02
661 723 3.424703 CACCATTCCTGTTCCATCAAGT 58.575 45.455 0.00 0.00 0.00 3.16
915 998 1.129917 CATCATCTGCTCCTCCTGGT 58.870 55.000 0.00 0.00 34.23 4.00
916 999 1.070445 CATCATCTGCTCCTCCTGGTC 59.930 57.143 0.00 0.00 34.23 4.02
917 1000 0.689080 TCATCTGCTCCTCCTGGTCC 60.689 60.000 0.00 0.00 34.23 4.46
918 1001 0.690411 CATCTGCTCCTCCTGGTCCT 60.690 60.000 0.00 0.00 34.23 3.85
919 1002 0.690411 ATCTGCTCCTCCTGGTCCTG 60.690 60.000 0.00 0.00 34.23 3.86
920 1003 2.284921 TGCTCCTCCTGGTCCTGG 60.285 66.667 8.53 8.53 34.23 4.45
1170 1263 4.439057 AGTTGCCAGGTACATACATAACG 58.561 43.478 0.00 0.00 0.00 3.18
1214 1311 3.188254 TCTGTATTTCAACATGCCACACG 59.812 43.478 0.00 0.00 0.00 4.49
1230 1327 1.464608 ACACGTTCATTCATGCTTCGG 59.535 47.619 0.00 0.00 0.00 4.30
1298 1400 3.578456 CCGCATGGTGTTCACCTC 58.422 61.111 20.48 10.24 0.00 3.85
1301 1403 1.021390 CGCATGGTGTTCACCTCTCC 61.021 60.000 20.48 7.64 0.00 3.71
1540 1643 4.277476 ACTTGTTCTCCAAATCACCACAA 58.723 39.130 0.00 0.00 31.20 3.33
1541 1644 4.339247 ACTTGTTCTCCAAATCACCACAAG 59.661 41.667 7.44 7.44 43.40 3.16
1542 1645 4.163441 TGTTCTCCAAATCACCACAAGA 57.837 40.909 0.00 0.00 0.00 3.02
1543 1646 4.531854 TGTTCTCCAAATCACCACAAGAA 58.468 39.130 0.00 0.00 0.00 2.52
1544 1647 4.952957 TGTTCTCCAAATCACCACAAGAAA 59.047 37.500 0.00 0.00 0.00 2.52
1545 1648 5.598005 TGTTCTCCAAATCACCACAAGAAAT 59.402 36.000 0.00 0.00 0.00 2.17
1546 1649 6.775142 TGTTCTCCAAATCACCACAAGAAATA 59.225 34.615 0.00 0.00 0.00 1.40
1547 1650 7.286546 TGTTCTCCAAATCACCACAAGAAATAA 59.713 33.333 0.00 0.00 0.00 1.40
1548 1651 7.831691 TCTCCAAATCACCACAAGAAATAAA 57.168 32.000 0.00 0.00 0.00 1.40
1549 1652 8.421249 TCTCCAAATCACCACAAGAAATAAAT 57.579 30.769 0.00 0.00 0.00 1.40
1550 1653 8.869109 TCTCCAAATCACCACAAGAAATAAATT 58.131 29.630 0.00 0.00 0.00 1.82
1553 1656 9.927668 CCAAATCACCACAAGAAATAAATTAGT 57.072 29.630 0.00 0.00 0.00 2.24
1559 1662 9.353999 CACCACAAGAAATAAATTAGTAAAGCC 57.646 33.333 0.00 0.00 0.00 4.35
1560 1663 9.084533 ACCACAAGAAATAAATTAGTAAAGCCA 57.915 29.630 0.00 0.00 0.00 4.75
1573 1676 1.831652 AAAGCCAGTCACCCCTCTCG 61.832 60.000 0.00 0.00 0.00 4.04
1574 1677 4.459089 GCCAGTCACCCCTCTCGC 62.459 72.222 0.00 0.00 0.00 5.03
1615 1718 5.810587 ACAGCCAATTACAGTAATCAGTACG 59.189 40.000 6.26 0.00 37.81 3.67
1632 1735 2.185004 ACGCAGTTAACTCTGGCATT 57.815 45.000 4.77 0.00 37.78 3.56
1633 1736 2.076863 ACGCAGTTAACTCTGGCATTC 58.923 47.619 4.77 0.00 37.78 2.67
1634 1737 1.398390 CGCAGTTAACTCTGGCATTCC 59.602 52.381 4.77 0.00 36.12 3.01
1635 1738 2.716217 GCAGTTAACTCTGGCATTCCT 58.284 47.619 4.77 0.00 36.12 3.36
1656 1759 4.220821 CCTAACCTTCTCTGCACTCAACTA 59.779 45.833 0.00 0.00 0.00 2.24
1661 1764 5.246203 ACCTTCTCTGCACTCAACTATACAA 59.754 40.000 0.00 0.00 0.00 2.41
1663 1766 6.091441 CCTTCTCTGCACTCAACTATACAAAC 59.909 42.308 0.00 0.00 0.00 2.93
1664 1767 6.346477 TCTCTGCACTCAACTATACAAACT 57.654 37.500 0.00 0.00 0.00 2.66
1665 1768 6.159293 TCTCTGCACTCAACTATACAAACTG 58.841 40.000 0.00 0.00 0.00 3.16
1666 1769 5.237815 TCTGCACTCAACTATACAAACTGG 58.762 41.667 0.00 0.00 0.00 4.00
1671 1813 6.371548 GCACTCAACTATACAAACTGGAATGA 59.628 38.462 0.00 0.00 0.00 2.57
1696 1838 7.794041 AGAATGAGAATGCTAAGATTCAGAGT 58.206 34.615 0.00 0.00 35.16 3.24
1703 1845 4.960938 TGCTAAGATTCAGAGTTGTGTGT 58.039 39.130 0.00 0.00 0.00 3.72
1915 2057 0.250727 GCTGGTGTTCTACAAGGGCA 60.251 55.000 0.00 0.00 30.41 5.36
2422 2570 2.249309 CGCTCTGCACCAACAACG 59.751 61.111 0.00 0.00 0.00 4.10
2436 2584 2.030562 AACGCCTTCTCCACCACG 59.969 61.111 0.00 0.00 0.00 4.94
2500 2651 1.000145 AATCCCCCGTCGCCATTTT 60.000 52.632 0.00 0.00 0.00 1.82
2522 2673 2.410774 GCGCGAGTTCTCAATGCATATC 60.411 50.000 12.10 0.00 0.00 1.63
2523 2674 2.796593 CGCGAGTTCTCAATGCATATCA 59.203 45.455 0.00 0.00 0.00 2.15
2524 2675 3.431233 CGCGAGTTCTCAATGCATATCAT 59.569 43.478 0.00 0.00 36.87 2.45
2525 2676 4.622740 CGCGAGTTCTCAATGCATATCATA 59.377 41.667 0.00 0.00 34.33 2.15
2526 2677 5.290400 CGCGAGTTCTCAATGCATATCATAT 59.710 40.000 0.00 0.00 34.33 1.78
2567 2718 3.003763 GGAGCTCTGGAACCCGGT 61.004 66.667 14.64 0.00 0.00 5.28
2607 2758 4.437587 ATGCTGTGCAGGGAGGCC 62.438 66.667 0.00 0.00 43.65 5.19
2727 2878 4.963276 TCGGCAACAGAGGAAATAATTG 57.037 40.909 0.00 0.00 0.00 2.32
3011 3174 2.035832 GGGCGATGTAAAATTCCCCATG 59.964 50.000 0.00 0.00 0.00 3.66
3019 3182 7.040062 CGATGTAAAATTCCCCATGGCTATTAA 60.040 37.037 6.09 0.00 0.00 1.40
3020 3183 8.740616 ATGTAAAATTCCCCATGGCTATTAAT 57.259 30.769 6.09 0.00 0.00 1.40
3021 3184 9.836179 ATGTAAAATTCCCCATGGCTATTAATA 57.164 29.630 6.09 0.00 0.00 0.98
3022 3185 9.836179 TGTAAAATTCCCCATGGCTATTAATAT 57.164 29.630 6.09 0.00 0.00 1.28
3073 3236 9.790344 CTTTAGAAAATGGAGGATACATCATCT 57.210 33.333 4.10 0.00 37.71 2.90
3082 3245 5.821470 GGAGGATACATCATCTATGCATTGG 59.179 44.000 3.54 0.00 39.39 3.16
3098 3261 0.888736 TTGGTTGATGCACAGGGTCG 60.889 55.000 0.00 0.00 0.00 4.79
3104 3267 1.009829 GATGCACAGGGTCGTGAATC 58.990 55.000 0.00 0.00 43.14 2.52
3105 3268 0.615331 ATGCACAGGGTCGTGAATCT 59.385 50.000 0.00 0.00 39.34 2.40
3106 3269 0.037326 TGCACAGGGTCGTGAATCTC 60.037 55.000 0.00 0.00 39.34 2.75
3107 3270 0.037326 GCACAGGGTCGTGAATCTCA 60.037 55.000 0.00 0.00 39.34 3.27
3108 3271 1.406069 GCACAGGGTCGTGAATCTCAT 60.406 52.381 0.00 0.00 39.34 2.90
3118 3733 5.220739 GGTCGTGAATCTCATTTGATTCCTG 60.221 44.000 12.73 6.98 46.97 3.86
3147 3801 6.716173 ACATGTTTGGTTAGGGTTACGTTAAT 59.284 34.615 0.00 0.00 0.00 1.40
3153 3807 5.048852 TGGTTAGGGTTACGTTAATGCAAAC 60.049 40.000 0.00 0.16 0.00 2.93
3188 3842 4.261801 AGGTTACACTACATTGTGGATGC 58.738 43.478 7.20 0.00 41.84 3.91
3189 3843 4.006989 GGTTACACTACATTGTGGATGCA 58.993 43.478 7.20 0.00 41.84 3.96
3190 3844 4.457603 GGTTACACTACATTGTGGATGCAA 59.542 41.667 7.20 0.00 41.84 4.08
3191 3845 5.125417 GGTTACACTACATTGTGGATGCAAT 59.875 40.000 7.20 0.00 41.84 3.56
3260 3914 3.707316 ACAGAGAGAAGGACTACATGCT 58.293 45.455 0.00 0.00 0.00 3.79
3302 3956 4.468153 AGAGAGAAGGACTACATGGGAAAC 59.532 45.833 0.00 0.00 0.00 2.78
3387 4070 6.299805 TCACTTAGCAACAATACCTCTCAT 57.700 37.500 0.00 0.00 0.00 2.90
3504 4187 9.909644 AGAAGCATAACTAGTAACATATTACGG 57.090 33.333 0.00 0.00 44.69 4.02
3505 4188 8.530269 AAGCATAACTAGTAACATATTACGGC 57.470 34.615 0.00 0.00 44.69 5.68
3506 4189 7.663827 AGCATAACTAGTAACATATTACGGCA 58.336 34.615 0.00 0.00 44.69 5.69
3507 4190 8.311836 AGCATAACTAGTAACATATTACGGCAT 58.688 33.333 0.00 0.00 44.69 4.40
3508 4191 8.592998 GCATAACTAGTAACATATTACGGCATC 58.407 37.037 0.00 0.00 44.69 3.91
3509 4192 9.856488 CATAACTAGTAACATATTACGGCATCT 57.144 33.333 0.00 0.00 44.69 2.90
3511 4194 6.921914 ACTAGTAACATATTACGGCATCTCC 58.078 40.000 0.00 0.00 44.69 3.71
3512 4195 5.801531 AGTAACATATTACGGCATCTCCA 57.198 39.130 0.00 0.00 44.69 3.86
3513 4196 6.169557 AGTAACATATTACGGCATCTCCAA 57.830 37.500 0.00 0.00 44.69 3.53
3514 4197 6.769512 AGTAACATATTACGGCATCTCCAAT 58.230 36.000 0.00 0.00 44.69 3.16
3515 4198 5.947228 AACATATTACGGCATCTCCAATG 57.053 39.130 0.00 0.00 34.01 2.82
3516 4199 3.753272 ACATATTACGGCATCTCCAATGC 59.247 43.478 1.40 1.40 43.85 3.56
3521 4204 3.425422 GCATCTCCAATGCCGACC 58.575 61.111 0.00 0.00 39.01 4.79
3522 4205 2.189499 GCATCTCCAATGCCGACCC 61.189 63.158 0.00 0.00 39.01 4.46
3523 4206 1.889105 CATCTCCAATGCCGACCCG 60.889 63.158 0.00 0.00 0.00 5.28
3524 4207 2.367202 ATCTCCAATGCCGACCCGT 61.367 57.895 0.00 0.00 0.00 5.28
3525 4208 1.046472 ATCTCCAATGCCGACCCGTA 61.046 55.000 0.00 0.00 0.00 4.02
3526 4209 1.219664 CTCCAATGCCGACCCGTAA 59.780 57.895 0.00 0.00 0.00 3.18
3527 4210 0.391927 CTCCAATGCCGACCCGTAAA 60.392 55.000 0.00 0.00 0.00 2.01
3528 4211 0.253610 TCCAATGCCGACCCGTAAAT 59.746 50.000 0.00 0.00 0.00 1.40
3529 4212 0.661020 CCAATGCCGACCCGTAAATC 59.339 55.000 0.00 0.00 0.00 2.17
3530 4213 0.661020 CAATGCCGACCCGTAAATCC 59.339 55.000 0.00 0.00 0.00 3.01
3531 4214 0.253610 AATGCCGACCCGTAAATCCA 59.746 50.000 0.00 0.00 0.00 3.41
3532 4215 0.463116 ATGCCGACCCGTAAATCCAC 60.463 55.000 0.00 0.00 0.00 4.02
3533 4216 1.816679 GCCGACCCGTAAATCCACC 60.817 63.158 0.00 0.00 0.00 4.61
3534 4217 1.153309 CCGACCCGTAAATCCACCC 60.153 63.158 0.00 0.00 0.00 4.61
3535 4218 1.153309 CGACCCGTAAATCCACCCC 60.153 63.158 0.00 0.00 0.00 4.95
3536 4219 1.619807 CGACCCGTAAATCCACCCCT 61.620 60.000 0.00 0.00 0.00 4.79
3537 4220 0.179702 GACCCGTAAATCCACCCCTC 59.820 60.000 0.00 0.00 0.00 4.30
3538 4221 0.253020 ACCCGTAAATCCACCCCTCT 60.253 55.000 0.00 0.00 0.00 3.69
3539 4222 0.468648 CCCGTAAATCCACCCCTCTC 59.531 60.000 0.00 0.00 0.00 3.20
3540 4223 0.468648 CCGTAAATCCACCCCTCTCC 59.531 60.000 0.00 0.00 0.00 3.71
3541 4224 0.468648 CGTAAATCCACCCCTCTCCC 59.531 60.000 0.00 0.00 0.00 4.30
3542 4225 0.844660 GTAAATCCACCCCTCTCCCC 59.155 60.000 0.00 0.00 0.00 4.81
3543 4226 0.328158 TAAATCCACCCCTCTCCCCC 60.328 60.000 0.00 0.00 0.00 5.40
3544 4227 2.446337 AAATCCACCCCTCTCCCCCA 62.446 60.000 0.00 0.00 0.00 4.96
3545 4228 2.227928 AATCCACCCCTCTCCCCCAT 62.228 60.000 0.00 0.00 0.00 4.00
3546 4229 2.644628 ATCCACCCCTCTCCCCCATC 62.645 65.000 0.00 0.00 0.00 3.51
3547 4230 2.774351 CACCCCTCTCCCCCATCC 60.774 72.222 0.00 0.00 0.00 3.51
3548 4231 4.499116 ACCCCTCTCCCCCATCCG 62.499 72.222 0.00 0.00 0.00 4.18
3549 4232 4.499116 CCCCTCTCCCCCATCCGT 62.499 72.222 0.00 0.00 0.00 4.69
3550 4233 2.844839 CCCTCTCCCCCATCCGTC 60.845 72.222 0.00 0.00 0.00 4.79
3551 4234 2.844839 CCTCTCCCCCATCCGTCC 60.845 72.222 0.00 0.00 0.00 4.79
3552 4235 2.041922 CTCTCCCCCATCCGTCCA 60.042 66.667 0.00 0.00 0.00 4.02
3553 4236 2.365105 TCTCCCCCATCCGTCCAC 60.365 66.667 0.00 0.00 0.00 4.02
3554 4237 3.849951 CTCCCCCATCCGTCCACG 61.850 72.222 0.00 0.00 39.44 4.94
3564 4247 2.261671 CGTCCACGGACAGGGAAG 59.738 66.667 16.23 0.00 44.77 3.46
3565 4248 2.663196 GTCCACGGACAGGGAAGG 59.337 66.667 11.43 0.00 44.02 3.46
3566 4249 1.911766 GTCCACGGACAGGGAAGGA 60.912 63.158 11.43 0.00 44.02 3.36
3567 4250 1.911766 TCCACGGACAGGGAAGGAC 60.912 63.158 0.00 0.00 0.00 3.85
3568 4251 2.261671 CACGGACAGGGAAGGACG 59.738 66.667 0.00 0.00 0.00 4.79
3569 4252 2.203596 ACGGACAGGGAAGGACGT 60.204 61.111 0.00 0.00 0.00 4.34
3570 4253 2.261671 CGGACAGGGAAGGACGTG 59.738 66.667 0.00 0.00 0.00 4.49
3571 4254 2.571216 CGGACAGGGAAGGACGTGT 61.571 63.158 0.00 0.00 41.63 4.49
3572 4255 4.990288 GACAGGGAAGGACGTGTC 57.010 61.111 0.00 3.71 45.30 3.67
3573 4256 2.352817 GACAGGGAAGGACGTGTCT 58.647 57.895 0.00 0.00 46.87 3.41
3574 4257 1.542492 GACAGGGAAGGACGTGTCTA 58.458 55.000 0.00 0.00 46.87 2.59
3575 4258 2.100989 GACAGGGAAGGACGTGTCTAT 58.899 52.381 0.00 0.00 46.87 1.98
3576 4259 1.825474 ACAGGGAAGGACGTGTCTATG 59.175 52.381 0.00 0.00 34.70 2.23
3577 4260 1.137086 CAGGGAAGGACGTGTCTATGG 59.863 57.143 0.00 0.00 0.00 2.74
3578 4261 1.006758 AGGGAAGGACGTGTCTATGGA 59.993 52.381 0.00 0.00 0.00 3.41
3579 4262 1.136500 GGGAAGGACGTGTCTATGGAC 59.864 57.143 1.56 1.56 42.42 4.02
3589 4272 1.871080 GTCTATGGACAAGGATGCGG 58.129 55.000 4.04 0.00 41.75 5.69
3590 4273 1.412710 GTCTATGGACAAGGATGCGGA 59.587 52.381 4.04 0.00 41.75 5.54
3591 4274 2.115427 TCTATGGACAAGGATGCGGAA 58.885 47.619 0.00 0.00 0.00 4.30
3592 4275 2.103094 TCTATGGACAAGGATGCGGAAG 59.897 50.000 0.00 0.00 0.00 3.46
3593 4276 0.911769 ATGGACAAGGATGCGGAAGA 59.088 50.000 0.00 0.00 0.00 2.87
3594 4277 0.036388 TGGACAAGGATGCGGAAGAC 60.036 55.000 0.00 0.00 0.00 3.01
3596 4279 1.079127 ACAAGGATGCGGAAGACGG 60.079 57.895 0.00 0.00 44.51 4.79
3597 4280 1.079127 CAAGGATGCGGAAGACGGT 60.079 57.895 0.00 0.00 44.51 4.83
3598 4281 1.084370 CAAGGATGCGGAAGACGGTC 61.084 60.000 0.00 0.00 44.51 4.79
3599 4282 1.541310 AAGGATGCGGAAGACGGTCA 61.541 55.000 11.27 0.00 44.51 4.02
3600 4283 1.144057 GGATGCGGAAGACGGTCAT 59.856 57.895 11.27 0.00 44.51 3.06
3601 4284 0.876342 GGATGCGGAAGACGGTCATC 60.876 60.000 11.27 7.91 44.51 2.92
3602 4285 0.103208 GATGCGGAAGACGGTCATCT 59.897 55.000 11.27 0.00 44.51 2.90
3603 4286 1.337071 GATGCGGAAGACGGTCATCTA 59.663 52.381 11.27 0.15 44.51 1.98
3604 4287 1.179152 TGCGGAAGACGGTCATCTAA 58.821 50.000 11.27 0.00 44.51 2.10
3605 4288 1.754803 TGCGGAAGACGGTCATCTAAT 59.245 47.619 11.27 0.00 44.51 1.73
3606 4289 2.128035 GCGGAAGACGGTCATCTAATG 58.872 52.381 11.27 1.81 44.51 1.90
3607 4290 2.128035 CGGAAGACGGTCATCTAATGC 58.872 52.381 11.27 0.00 39.42 3.56
3608 4291 2.223829 CGGAAGACGGTCATCTAATGCT 60.224 50.000 11.27 0.00 39.42 3.79
3609 4292 3.126831 GGAAGACGGTCATCTAATGCTG 58.873 50.000 11.27 0.00 0.00 4.41
3610 4293 2.231215 AGACGGTCATCTAATGCTGC 57.769 50.000 11.27 0.00 0.00 5.25
3611 4294 1.202580 AGACGGTCATCTAATGCTGCC 60.203 52.381 11.27 0.00 0.00 4.85
3612 4295 0.179045 ACGGTCATCTAATGCTGCCC 60.179 55.000 0.00 0.00 0.00 5.36
3613 4296 1.224069 CGGTCATCTAATGCTGCCCG 61.224 60.000 0.00 0.00 0.00 6.13
3614 4297 1.510480 GGTCATCTAATGCTGCCCGC 61.510 60.000 0.00 0.00 39.77 6.13
3622 4305 4.335214 TGCTGCCCGCATACATTT 57.665 50.000 0.00 0.00 45.47 2.32
3623 4306 2.105984 TGCTGCCCGCATACATTTC 58.894 52.632 0.00 0.00 45.47 2.17
3624 4307 0.679321 TGCTGCCCGCATACATTTCA 60.679 50.000 0.00 0.00 45.47 2.69
3625 4308 0.455410 GCTGCCCGCATACATTTCAA 59.545 50.000 0.00 0.00 38.92 2.69
3626 4309 1.798813 GCTGCCCGCATACATTTCAAC 60.799 52.381 0.00 0.00 38.92 3.18
3627 4310 0.449786 TGCCCGCATACATTTCAACG 59.550 50.000 0.00 0.00 0.00 4.10
3628 4311 0.730265 GCCCGCATACATTTCAACGA 59.270 50.000 0.00 0.00 0.00 3.85
3629 4312 1.531058 GCCCGCATACATTTCAACGAC 60.531 52.381 0.00 0.00 0.00 4.34
3630 4313 2.006888 CCCGCATACATTTCAACGACT 58.993 47.619 0.00 0.00 0.00 4.18
3631 4314 3.191669 CCCGCATACATTTCAACGACTA 58.808 45.455 0.00 0.00 0.00 2.59
3632 4315 3.807622 CCCGCATACATTTCAACGACTAT 59.192 43.478 0.00 0.00 0.00 2.12
3633 4316 4.272504 CCCGCATACATTTCAACGACTATT 59.727 41.667 0.00 0.00 0.00 1.73
3634 4317 5.220777 CCCGCATACATTTCAACGACTATTT 60.221 40.000 0.00 0.00 0.00 1.40
3635 4318 6.018588 CCCGCATACATTTCAACGACTATTTA 60.019 38.462 0.00 0.00 0.00 1.40
3636 4319 7.403421 CCGCATACATTTCAACGACTATTTAA 58.597 34.615 0.00 0.00 0.00 1.52
3637 4320 7.906010 CCGCATACATTTCAACGACTATTTAAA 59.094 33.333 0.00 0.00 0.00 1.52
3638 4321 8.721476 CGCATACATTTCAACGACTATTTAAAC 58.279 33.333 0.00 0.00 0.00 2.01
3639 4322 9.006215 GCATACATTTCAACGACTATTTAAACC 57.994 33.333 0.00 0.00 0.00 3.27
3642 4325 8.791355 ACATTTCAACGACTATTTAAACCAAC 57.209 30.769 0.00 0.00 0.00 3.77
3643 4326 7.863877 ACATTTCAACGACTATTTAAACCAACC 59.136 33.333 0.00 0.00 0.00 3.77
3644 4327 6.939132 TTCAACGACTATTTAAACCAACCA 57.061 33.333 0.00 0.00 0.00 3.67
3645 4328 6.303021 TCAACGACTATTTAAACCAACCAC 57.697 37.500 0.00 0.00 0.00 4.16
3646 4329 5.821470 TCAACGACTATTTAAACCAACCACA 59.179 36.000 0.00 0.00 0.00 4.17
3647 4330 5.678132 ACGACTATTTAAACCAACCACAC 57.322 39.130 0.00 0.00 0.00 3.82
3648 4331 4.211794 ACGACTATTTAAACCAACCACACG 59.788 41.667 0.00 0.00 0.00 4.49
3649 4332 4.448395 CGACTATTTAAACCAACCACACGA 59.552 41.667 0.00 0.00 0.00 4.35
3650 4333 5.050227 CGACTATTTAAACCAACCACACGAA 60.050 40.000 0.00 0.00 0.00 3.85
3651 4334 6.511444 CGACTATTTAAACCAACCACACGAAA 60.511 38.462 0.00 0.00 0.00 3.46
3652 4335 7.279750 ACTATTTAAACCAACCACACGAAAT 57.720 32.000 0.00 0.00 0.00 2.17
3653 4336 7.718525 ACTATTTAAACCAACCACACGAAATT 58.281 30.769 0.00 0.00 0.00 1.82
3654 4337 7.863877 ACTATTTAAACCAACCACACGAAATTC 59.136 33.333 0.00 0.00 0.00 2.17
3655 4338 2.766970 AACCAACCACACGAAATTCG 57.233 45.000 14.35 14.35 46.93 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 5.607939 ACCGGTTTTCAGAATTCCTTTTT 57.392 34.783 0.00 0.00 0.00 1.94
12 13 5.278120 CGTACCGGTTTTCAGAATTCCTTTT 60.278 40.000 15.04 0.00 0.00 2.27
13 14 4.214758 CGTACCGGTTTTCAGAATTCCTTT 59.785 41.667 15.04 0.00 0.00 3.11
14 15 3.749609 CGTACCGGTTTTCAGAATTCCTT 59.250 43.478 15.04 0.00 0.00 3.36
15 16 3.332034 CGTACCGGTTTTCAGAATTCCT 58.668 45.455 15.04 0.00 0.00 3.36
16 17 2.159612 GCGTACCGGTTTTCAGAATTCC 60.160 50.000 15.04 0.00 0.00 3.01
51 52 8.328864 CGGTTCAGCTGATTAACTAAGTTTATC 58.671 37.037 19.04 0.00 33.78 1.75
52 53 8.038944 TCGGTTCAGCTGATTAACTAAGTTTAT 58.961 33.333 19.04 0.00 0.00 1.40
53 54 7.380536 TCGGTTCAGCTGATTAACTAAGTTTA 58.619 34.615 19.04 0.00 0.00 2.01
61 62 2.678336 CCCTTCGGTTCAGCTGATTAAC 59.322 50.000 19.04 12.94 31.57 2.01
69 70 2.193087 TTAGCCCCCTTCGGTTCAGC 62.193 60.000 0.00 0.00 0.00 4.26
112 113 5.408299 GCTTTGGTTTTGAATATGGGTTCAC 59.592 40.000 0.00 0.00 37.80 3.18
137 138 4.318974 GCCGTTTTGTTTCATACTGTACGT 60.319 41.667 0.00 0.00 0.00 3.57
139 140 4.907582 GTGCCGTTTTGTTTCATACTGTAC 59.092 41.667 0.00 0.00 0.00 2.90
142 143 4.223320 AGTGCCGTTTTGTTTCATACTG 57.777 40.909 0.00 0.00 0.00 2.74
143 144 4.911514 AAGTGCCGTTTTGTTTCATACT 57.088 36.364 0.00 0.00 0.00 2.12
144 145 4.145756 CGAAAGTGCCGTTTTGTTTCATAC 59.854 41.667 0.00 0.00 0.00 2.39
145 146 4.035324 TCGAAAGTGCCGTTTTGTTTCATA 59.965 37.500 0.00 0.00 0.00 2.15
146 147 3.112580 CGAAAGTGCCGTTTTGTTTCAT 58.887 40.909 0.00 0.00 0.00 2.57
147 148 2.161808 TCGAAAGTGCCGTTTTGTTTCA 59.838 40.909 0.00 0.00 0.00 2.69
148 149 2.788030 TCGAAAGTGCCGTTTTGTTTC 58.212 42.857 0.00 0.00 0.00 2.78
158 159 4.944249 GCAAGGTTCGAAAGTGCC 57.056 55.556 14.80 6.14 0.00 5.01
194 202 4.032900 TGCGTTATTCTTCTTCTGAATCGC 59.967 41.667 12.39 12.39 42.32 4.58
195 203 5.702622 TGCGTTATTCTTCTTCTGAATCG 57.297 39.130 0.00 0.00 35.90 3.34
197 205 5.277058 GCGATGCGTTATTCTTCTTCTGAAT 60.277 40.000 0.00 0.00 37.78 2.57
205 232 1.332028 CGTGGCGATGCGTTATTCTTC 60.332 52.381 0.00 0.00 0.00 2.87
206 233 0.650512 CGTGGCGATGCGTTATTCTT 59.349 50.000 0.00 0.00 0.00 2.52
208 235 0.859232 ATCGTGGCGATGCGTTATTC 59.141 50.000 3.08 0.00 45.24 1.75
210 237 1.415374 GTATCGTGGCGATGCGTTAT 58.585 50.000 13.42 0.00 46.43 1.89
211 238 2.876052 GTATCGTGGCGATGCGTTA 58.124 52.632 13.42 0.00 46.43 3.18
215 242 3.702555 GGCGTATCGTGGCGATGC 61.703 66.667 13.42 11.15 46.43 3.91
216 243 3.036084 GGGCGTATCGTGGCGATG 61.036 66.667 13.42 0.21 46.43 3.84
257 301 6.721321 CAATTCACCACTAACTAAAACGTGT 58.279 36.000 0.00 0.00 0.00 4.49
262 306 4.216687 CGGGCAATTCACCACTAACTAAAA 59.783 41.667 0.00 0.00 0.00 1.52
266 310 1.349688 TCGGGCAATTCACCACTAACT 59.650 47.619 0.00 0.00 0.00 2.24
293 337 1.539827 CCCGTTTCATTTCCTTTCGCT 59.460 47.619 0.00 0.00 0.00 4.93
301 345 4.444388 GCACTTCTTTTCCCGTTTCATTTC 59.556 41.667 0.00 0.00 0.00 2.17
305 349 1.332375 CGCACTTCTTTTCCCGTTTCA 59.668 47.619 0.00 0.00 0.00 2.69
402 446 1.807573 CTTGCGAGGCGAGAAGGTC 60.808 63.158 0.00 0.00 42.27 3.85
411 455 1.578206 GGGTTTGAGACTTGCGAGGC 61.578 60.000 5.79 1.04 0.00 4.70
414 458 2.218603 GAAAGGGTTTGAGACTTGCGA 58.781 47.619 0.00 0.00 0.00 5.10
416 460 1.613925 GGGAAAGGGTTTGAGACTTGC 59.386 52.381 0.00 0.00 0.00 4.01
417 461 3.149981 GAGGGAAAGGGTTTGAGACTTG 58.850 50.000 0.00 0.00 0.00 3.16
418 462 2.108425 GGAGGGAAAGGGTTTGAGACTT 59.892 50.000 0.00 0.00 0.00 3.01
419 463 1.705745 GGAGGGAAAGGGTTTGAGACT 59.294 52.381 0.00 0.00 0.00 3.24
420 464 1.705745 AGGAGGGAAAGGGTTTGAGAC 59.294 52.381 0.00 0.00 0.00 3.36
421 465 1.985895 GAGGAGGGAAAGGGTTTGAGA 59.014 52.381 0.00 0.00 0.00 3.27
422 466 1.988846 AGAGGAGGGAAAGGGTTTGAG 59.011 52.381 0.00 0.00 0.00 3.02
423 467 2.133858 AGAGGAGGGAAAGGGTTTGA 57.866 50.000 0.00 0.00 0.00 2.69
425 469 7.419865 CGTTTATATAGAGGAGGGAAAGGGTTT 60.420 40.741 0.00 0.00 0.00 3.27
426 470 6.042897 CGTTTATATAGAGGAGGGAAAGGGTT 59.957 42.308 0.00 0.00 0.00 4.11
427 471 5.543020 CGTTTATATAGAGGAGGGAAAGGGT 59.457 44.000 0.00 0.00 0.00 4.34
428 472 5.046520 CCGTTTATATAGAGGAGGGAAAGGG 60.047 48.000 0.00 0.00 0.00 3.95
429 473 5.569026 GCCGTTTATATAGAGGAGGGAAAGG 60.569 48.000 4.89 0.00 0.00 3.11
431 475 4.903049 TGCCGTTTATATAGAGGAGGGAAA 59.097 41.667 4.89 0.00 0.00 3.13
432 476 4.282703 GTGCCGTTTATATAGAGGAGGGAA 59.717 45.833 4.89 0.00 0.00 3.97
433 477 3.830755 GTGCCGTTTATATAGAGGAGGGA 59.169 47.826 4.89 0.00 0.00 4.20
434 478 3.056035 GGTGCCGTTTATATAGAGGAGGG 60.056 52.174 4.89 0.39 0.00 4.30
458 516 2.245438 GAGGGAGGAAGTGAAGGGCG 62.245 65.000 0.00 0.00 0.00 6.13
463 521 0.104144 TTGGGGAGGGAGGAAGTGAA 60.104 55.000 0.00 0.00 0.00 3.18
471 529 2.922234 GCTGGATTGGGGAGGGAG 59.078 66.667 0.00 0.00 0.00 4.30
485 543 3.535962 GAGGAGGAGGAGGCGCTG 61.536 72.222 7.64 0.00 0.00 5.18
486 544 4.851214 GGAGGAGGAGGAGGCGCT 62.851 72.222 7.64 0.00 0.00 5.92
487 545 4.851214 AGGAGGAGGAGGAGGCGC 62.851 72.222 0.00 0.00 0.00 6.53
488 546 2.520741 GAGGAGGAGGAGGAGGCG 60.521 72.222 0.00 0.00 0.00 5.52
489 547 2.123033 GGAGGAGGAGGAGGAGGC 60.123 72.222 0.00 0.00 0.00 4.70
497 555 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
498 556 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
549 611 3.140144 AGAAGGTGGAGCTAGCTAGAGAT 59.860 47.826 25.15 9.05 0.00 2.75
555 617 3.028130 GAGTAAGAAGGTGGAGCTAGCT 58.972 50.000 19.45 19.45 0.00 3.32
556 618 2.761208 TGAGTAAGAAGGTGGAGCTAGC 59.239 50.000 6.62 6.62 0.00 3.42
557 619 3.131400 GGTGAGTAAGAAGGTGGAGCTAG 59.869 52.174 0.00 0.00 0.00 3.42
558 620 3.097614 GGTGAGTAAGAAGGTGGAGCTA 58.902 50.000 0.00 0.00 0.00 3.32
559 621 1.903183 GGTGAGTAAGAAGGTGGAGCT 59.097 52.381 0.00 0.00 0.00 4.09
560 622 1.404315 CGGTGAGTAAGAAGGTGGAGC 60.404 57.143 0.00 0.00 0.00 4.70
561 623 1.893801 ACGGTGAGTAAGAAGGTGGAG 59.106 52.381 0.00 0.00 0.00 3.86
562 624 1.616865 CACGGTGAGTAAGAAGGTGGA 59.383 52.381 0.74 0.00 0.00 4.02
563 625 1.939838 GCACGGTGAGTAAGAAGGTGG 60.940 57.143 13.29 0.00 0.00 4.61
564 626 1.429463 GCACGGTGAGTAAGAAGGTG 58.571 55.000 13.29 0.00 0.00 4.00
565 627 0.038526 CGCACGGTGAGTAAGAAGGT 60.039 55.000 13.29 0.00 0.00 3.50
566 628 1.352156 GCGCACGGTGAGTAAGAAGG 61.352 60.000 13.29 0.00 0.00 3.46
567 629 0.388649 AGCGCACGGTGAGTAAGAAG 60.389 55.000 13.29 0.00 0.00 2.85
568 630 0.032952 AAGCGCACGGTGAGTAAGAA 59.967 50.000 13.29 0.00 0.00 2.52
569 631 0.666274 CAAGCGCACGGTGAGTAAGA 60.666 55.000 13.29 0.00 0.00 2.10
570 632 0.666274 TCAAGCGCACGGTGAGTAAG 60.666 55.000 13.29 3.01 0.00 2.34
571 633 0.942410 GTCAAGCGCACGGTGAGTAA 60.942 55.000 13.29 0.00 0.00 2.24
572 634 1.372499 GTCAAGCGCACGGTGAGTA 60.372 57.895 13.29 0.00 0.00 2.59
573 635 2.661866 GTCAAGCGCACGGTGAGT 60.662 61.111 13.29 0.00 0.00 3.41
574 636 3.414700 GGTCAAGCGCACGGTGAG 61.415 66.667 13.29 10.27 0.00 3.51
577 639 4.373116 ATCGGTCAAGCGCACGGT 62.373 61.111 11.47 0.00 0.00 4.83
578 640 3.554692 GATCGGTCAAGCGCACGG 61.555 66.667 11.47 3.61 0.00 4.94
579 641 3.554692 GGATCGGTCAAGCGCACG 61.555 66.667 11.47 6.13 0.00 5.34
580 642 2.125512 AGGATCGGTCAAGCGCAC 60.126 61.111 11.47 0.00 0.00 5.34
581 643 2.184322 GAGGATCGGTCAAGCGCA 59.816 61.111 11.47 0.00 0.00 6.09
582 644 2.167861 GTGAGGATCGGTCAAGCGC 61.168 63.158 0.00 0.00 38.61 5.92
583 645 0.389817 TTGTGAGGATCGGTCAAGCG 60.390 55.000 0.00 0.00 38.61 4.68
584 646 1.936547 GATTGTGAGGATCGGTCAAGC 59.063 52.381 0.00 0.00 38.61 4.01
585 647 3.251479 TGATTGTGAGGATCGGTCAAG 57.749 47.619 0.00 0.00 38.61 3.02
586 648 3.694043 TTGATTGTGAGGATCGGTCAA 57.306 42.857 0.00 0.00 38.61 3.18
587 649 3.197549 TGATTGATTGTGAGGATCGGTCA 59.802 43.478 0.00 0.00 38.61 4.02
588 650 3.797039 TGATTGATTGTGAGGATCGGTC 58.203 45.455 0.00 0.00 38.61 4.79
589 651 3.912496 TGATTGATTGTGAGGATCGGT 57.088 42.857 0.00 0.00 38.61 4.69
590 652 3.003068 GCTTGATTGATTGTGAGGATCGG 59.997 47.826 0.00 0.00 38.61 4.18
591 653 3.875727 AGCTTGATTGATTGTGAGGATCG 59.124 43.478 0.00 0.00 38.61 3.69
592 654 5.124645 AGAGCTTGATTGATTGTGAGGATC 58.875 41.667 0.00 0.00 0.00 3.36
593 655 5.113446 AGAGCTTGATTGATTGTGAGGAT 57.887 39.130 0.00 0.00 0.00 3.24
594 656 4.564782 AGAGCTTGATTGATTGTGAGGA 57.435 40.909 0.00 0.00 0.00 3.71
595 657 5.640189 AAAGAGCTTGATTGATTGTGAGG 57.360 39.130 0.00 0.00 0.00 3.86
596 658 6.256686 GCTAAAGAGCTTGATTGATTGTGAG 58.743 40.000 0.00 0.00 45.98 3.51
597 659 6.187125 GCTAAAGAGCTTGATTGATTGTGA 57.813 37.500 0.00 0.00 45.98 3.58
612 674 0.461961 ACAGGGCGCTAGCTAAAGAG 59.538 55.000 13.93 0.00 44.37 2.85
613 675 0.902531 AACAGGGCGCTAGCTAAAGA 59.097 50.000 13.93 0.00 44.37 2.52
614 676 2.159085 ACTAACAGGGCGCTAGCTAAAG 60.159 50.000 13.93 0.00 44.37 1.85
615 677 1.829222 ACTAACAGGGCGCTAGCTAAA 59.171 47.619 13.93 0.00 44.37 1.85
616 678 1.481871 ACTAACAGGGCGCTAGCTAA 58.518 50.000 13.93 0.00 44.37 3.09
617 679 1.136305 CAACTAACAGGGCGCTAGCTA 59.864 52.381 13.93 0.00 44.37 3.32
618 680 0.108138 CAACTAACAGGGCGCTAGCT 60.108 55.000 13.93 0.00 44.37 3.32
619 681 1.090052 CCAACTAACAGGGCGCTAGC 61.090 60.000 7.64 4.06 44.18 3.42
620 682 1.090052 GCCAACTAACAGGGCGCTAG 61.090 60.000 7.64 2.82 38.04 3.42
621 683 1.078708 GCCAACTAACAGGGCGCTA 60.079 57.895 7.64 0.00 38.04 4.26
622 684 2.359975 GCCAACTAACAGGGCGCT 60.360 61.111 7.64 0.00 38.04 5.92
626 688 0.039618 ATGGTGGCCAACTAACAGGG 59.960 55.000 24.13 0.00 36.95 4.45
627 689 1.818674 GAATGGTGGCCAACTAACAGG 59.181 52.381 24.13 0.00 36.95 4.00
628 690 1.818674 GGAATGGTGGCCAACTAACAG 59.181 52.381 24.13 0.00 36.95 3.16
629 691 1.427368 AGGAATGGTGGCCAACTAACA 59.573 47.619 24.13 9.98 36.95 2.41
630 692 1.818674 CAGGAATGGTGGCCAACTAAC 59.181 52.381 24.13 12.43 36.95 2.34
631 693 1.427368 ACAGGAATGGTGGCCAACTAA 59.573 47.619 24.13 1.81 36.95 2.24
632 694 1.072266 ACAGGAATGGTGGCCAACTA 58.928 50.000 24.13 9.02 36.95 2.24
633 695 0.188342 AACAGGAATGGTGGCCAACT 59.812 50.000 24.13 0.98 36.95 3.16
634 696 0.603065 GAACAGGAATGGTGGCCAAC 59.397 55.000 15.99 15.99 36.95 3.77
635 697 0.541764 GGAACAGGAATGGTGGCCAA 60.542 55.000 7.24 0.00 36.95 4.52
636 698 1.076549 GGAACAGGAATGGTGGCCA 59.923 57.895 0.00 0.00 38.19 5.36
637 699 1.076549 TGGAACAGGAATGGTGGCC 59.923 57.895 0.00 0.00 0.00 5.36
638 700 4.841441 TGGAACAGGAATGGTGGC 57.159 55.556 0.00 0.00 0.00 5.01
649 711 2.027745 GCTCCAGAGACTTGATGGAACA 60.028 50.000 0.00 0.00 42.40 3.18
650 712 2.235898 AGCTCCAGAGACTTGATGGAAC 59.764 50.000 0.00 3.19 42.40 3.62
651 713 2.499289 GAGCTCCAGAGACTTGATGGAA 59.501 50.000 0.87 0.00 42.40 3.53
652 714 2.106566 GAGCTCCAGAGACTTGATGGA 58.893 52.381 0.87 5.26 40.80 3.41
653 715 1.202394 CGAGCTCCAGAGACTTGATGG 60.202 57.143 8.47 0.00 35.30 3.51
654 716 1.476085 ACGAGCTCCAGAGACTTGATG 59.524 52.381 8.47 0.00 0.00 3.07
655 717 1.476085 CACGAGCTCCAGAGACTTGAT 59.524 52.381 8.47 0.00 0.00 2.57
656 718 0.884514 CACGAGCTCCAGAGACTTGA 59.115 55.000 8.47 0.00 0.00 3.02
657 719 0.884514 TCACGAGCTCCAGAGACTTG 59.115 55.000 8.47 2.39 0.00 3.16
658 720 0.885196 GTCACGAGCTCCAGAGACTT 59.115 55.000 8.47 0.00 0.00 3.01
659 721 0.963355 GGTCACGAGCTCCAGAGACT 60.963 60.000 8.47 0.00 0.00 3.24
660 722 1.509004 GGTCACGAGCTCCAGAGAC 59.491 63.158 8.47 9.17 0.00 3.36
661 723 2.041115 CGGTCACGAGCTCCAGAGA 61.041 63.158 8.47 0.00 44.60 3.10
915 998 4.938756 ACCCAGCCCAACCCAGGA 62.939 66.667 0.00 0.00 0.00 3.86
916 999 2.543797 TAACCCAGCCCAACCCAGG 61.544 63.158 0.00 0.00 0.00 4.45
917 1000 1.304134 GTAACCCAGCCCAACCCAG 60.304 63.158 0.00 0.00 0.00 4.45
918 1001 1.776710 AGTAACCCAGCCCAACCCA 60.777 57.895 0.00 0.00 0.00 4.51
919 1002 1.304134 CAGTAACCCAGCCCAACCC 60.304 63.158 0.00 0.00 0.00 4.11
920 1003 0.178973 AACAGTAACCCAGCCCAACC 60.179 55.000 0.00 0.00 0.00 3.77
1170 1263 5.931146 AGAATGAATCGGATAGAAGATGCAC 59.069 40.000 0.00 0.00 35.43 4.57
1214 1311 0.248215 CGGCCGAAGCATGAATGAAC 60.248 55.000 24.07 0.00 42.56 3.18
1256 1353 8.515414 GGTTTGACATAGCTAAAATTCAACTCT 58.485 33.333 0.00 0.00 0.00 3.24
1298 1400 3.115390 TGTCTATTCAGGGGGAAAGGAG 58.885 50.000 0.00 0.00 39.39 3.69
1301 1403 8.539117 AATAAATTGTCTATTCAGGGGGAAAG 57.461 34.615 0.00 0.00 39.39 2.62
1345 1447 9.512588 AAAGAATTATGCTATTCGAGGATGATT 57.487 29.630 0.00 0.00 42.54 2.57
1421 1523 3.211045 TCTTCCACAAAGTCCCTTTTCG 58.789 45.455 0.00 0.00 36.31 3.46
1540 1643 8.957466 GGTGACTGGCTTTACTAATTTATTTCT 58.043 33.333 0.00 0.00 0.00 2.52
1541 1644 8.188799 GGGTGACTGGCTTTACTAATTTATTTC 58.811 37.037 0.00 0.00 0.00 2.17
1542 1645 7.123697 GGGGTGACTGGCTTTACTAATTTATTT 59.876 37.037 0.00 0.00 0.00 1.40
1543 1646 6.605995 GGGGTGACTGGCTTTACTAATTTATT 59.394 38.462 0.00 0.00 0.00 1.40
1544 1647 6.069029 AGGGGTGACTGGCTTTACTAATTTAT 60.069 38.462 0.00 0.00 0.00 1.40
1545 1648 5.252164 AGGGGTGACTGGCTTTACTAATTTA 59.748 40.000 0.00 0.00 0.00 1.40
1546 1649 4.044191 AGGGGTGACTGGCTTTACTAATTT 59.956 41.667 0.00 0.00 0.00 1.82
1547 1650 3.591977 AGGGGTGACTGGCTTTACTAATT 59.408 43.478 0.00 0.00 0.00 1.40
1548 1651 3.190439 AGGGGTGACTGGCTTTACTAAT 58.810 45.455 0.00 0.00 0.00 1.73
1549 1652 2.570302 GAGGGGTGACTGGCTTTACTAA 59.430 50.000 0.00 0.00 0.00 2.24
1550 1653 2.185387 GAGGGGTGACTGGCTTTACTA 58.815 52.381 0.00 0.00 0.00 1.82
1551 1654 0.984995 GAGGGGTGACTGGCTTTACT 59.015 55.000 0.00 0.00 0.00 2.24
1552 1655 0.984995 AGAGGGGTGACTGGCTTTAC 59.015 55.000 0.00 0.00 0.00 2.01
1553 1656 1.276622 GAGAGGGGTGACTGGCTTTA 58.723 55.000 0.00 0.00 0.00 1.85
1554 1657 1.831652 CGAGAGGGGTGACTGGCTTT 61.832 60.000 0.00 0.00 0.00 3.51
1555 1658 2.286523 CGAGAGGGGTGACTGGCTT 61.287 63.158 0.00 0.00 0.00 4.35
1556 1659 2.681778 CGAGAGGGGTGACTGGCT 60.682 66.667 0.00 0.00 0.00 4.75
1557 1660 4.459089 GCGAGAGGGGTGACTGGC 62.459 72.222 0.00 0.00 0.00 4.85
1558 1661 1.831652 AAAGCGAGAGGGGTGACTGG 61.832 60.000 0.00 0.00 0.00 4.00
1559 1662 0.035458 AAAAGCGAGAGGGGTGACTG 59.965 55.000 0.00 0.00 0.00 3.51
1560 1663 0.035458 CAAAAGCGAGAGGGGTGACT 59.965 55.000 0.00 0.00 0.00 3.41
1573 1676 5.105063 GGCTGTTGAGAATATTCCAAAAGC 58.895 41.667 30.40 30.40 42.09 3.51
1574 1677 6.271488 TGGCTGTTGAGAATATTCCAAAAG 57.729 37.500 21.18 21.18 31.48 2.27
1615 1718 2.716217 AGGAATGCCAGAGTTAACTGC 58.284 47.619 14.14 11.08 36.67 4.40
1632 1735 2.889512 TGAGTGCAGAGAAGGTTAGGA 58.110 47.619 0.00 0.00 0.00 2.94
1633 1736 3.007398 AGTTGAGTGCAGAGAAGGTTAGG 59.993 47.826 0.00 0.00 0.00 2.69
1634 1737 4.264460 AGTTGAGTGCAGAGAAGGTTAG 57.736 45.455 0.00 0.00 0.00 2.34
1635 1738 6.436218 TGTATAGTTGAGTGCAGAGAAGGTTA 59.564 38.462 0.00 0.00 0.00 2.85
1656 1759 8.900781 CATTCTCATTCTCATTCCAGTTTGTAT 58.099 33.333 0.00 0.00 0.00 2.29
1661 1764 5.507637 AGCATTCTCATTCTCATTCCAGTT 58.492 37.500 0.00 0.00 0.00 3.16
1663 1766 6.990939 TCTTAGCATTCTCATTCTCATTCCAG 59.009 38.462 0.00 0.00 0.00 3.86
1664 1767 6.892485 TCTTAGCATTCTCATTCTCATTCCA 58.108 36.000 0.00 0.00 0.00 3.53
1665 1768 7.982761 ATCTTAGCATTCTCATTCTCATTCC 57.017 36.000 0.00 0.00 0.00 3.01
1666 1769 9.053840 TGAATCTTAGCATTCTCATTCTCATTC 57.946 33.333 0.00 0.00 34.35 2.67
1671 1813 7.794041 ACTCTGAATCTTAGCATTCTCATTCT 58.206 34.615 0.00 0.00 34.35 2.40
1696 1838 6.318396 TCTGAAGAATGATCAAACACACACAA 59.682 34.615 0.00 0.00 0.00 3.33
1703 1845 6.367149 CGACTTCTCTGAAGAATGATCAAACA 59.633 38.462 13.42 0.00 40.68 2.83
1746 1888 2.035961 CACGAAGAAGAACCACTCCAGA 59.964 50.000 0.00 0.00 0.00 3.86
2500 2651 1.020861 ATGCATTGAGAACTCGCGCA 61.021 50.000 8.75 12.40 35.90 6.09
2727 2878 2.352960 CCGAGAGCAATTAGGTTTCTGC 59.647 50.000 0.00 0.00 34.96 4.26
2822 2977 1.803555 CAAGACACACACACACACACA 59.196 47.619 0.00 0.00 0.00 3.72
2824 2979 2.177394 ACAAGACACACACACACACA 57.823 45.000 0.00 0.00 0.00 3.72
2966 3129 6.599244 CCGAAATGGGAGCACAACATATATAT 59.401 38.462 0.00 0.00 0.00 0.86
2967 3130 5.937540 CCGAAATGGGAGCACAACATATATA 59.062 40.000 0.00 0.00 0.00 0.86
2968 3131 4.761739 CCGAAATGGGAGCACAACATATAT 59.238 41.667 0.00 0.00 0.00 0.86
2969 3132 4.133820 CCGAAATGGGAGCACAACATATA 58.866 43.478 0.00 0.00 0.00 0.86
3056 3219 6.826632 ATGCATAGATGATGTATCCTCCAT 57.173 37.500 0.00 0.00 36.20 3.41
3082 3245 0.602638 TCACGACCCTGTGCATCAAC 60.603 55.000 0.00 0.00 39.73 3.18
3091 3254 3.599343 TCAAATGAGATTCACGACCCTG 58.401 45.455 0.00 0.00 0.00 4.45
3104 3267 4.703575 ACATGTCCACAGGAATCAAATGAG 59.296 41.667 0.00 0.00 31.38 2.90
3105 3268 4.665451 ACATGTCCACAGGAATCAAATGA 58.335 39.130 0.00 0.00 31.38 2.57
3106 3269 5.395682 AACATGTCCACAGGAATCAAATG 57.604 39.130 0.00 0.00 31.38 2.32
3107 3270 5.279607 CCAAACATGTCCACAGGAATCAAAT 60.280 40.000 0.00 0.00 31.38 2.32
3108 3271 4.039004 CCAAACATGTCCACAGGAATCAAA 59.961 41.667 0.00 0.00 31.38 2.69
3118 3733 2.871453 ACCCTAACCAAACATGTCCAC 58.129 47.619 0.00 0.00 0.00 4.02
3153 3807 2.919229 GTGTAACCTCATTACGTCACCG 59.081 50.000 0.00 0.00 45.45 4.94
3157 3811 6.810182 ACAATGTAGTGTAACCTCATTACGTC 59.190 38.462 0.00 0.00 45.45 4.34
3193 3847 3.982576 AAACTAGCAAAAGTCCCGTTG 57.017 42.857 0.00 0.00 0.00 4.10
3275 3929 4.386312 CCCATGTAGTCCTTCTCTCTCTCT 60.386 50.000 0.00 0.00 0.00 3.10
3276 3930 3.888930 CCCATGTAGTCCTTCTCTCTCTC 59.111 52.174 0.00 0.00 0.00 3.20
3277 3931 3.529734 TCCCATGTAGTCCTTCTCTCTCT 59.470 47.826 0.00 0.00 0.00 3.10
3278 3932 3.904717 TCCCATGTAGTCCTTCTCTCTC 58.095 50.000 0.00 0.00 0.00 3.20
3279 3933 4.338795 TTCCCATGTAGTCCTTCTCTCT 57.661 45.455 0.00 0.00 0.00 3.10
3280 3934 4.468153 AGTTTCCCATGTAGTCCTTCTCTC 59.532 45.833 0.00 0.00 0.00 3.20
3281 3935 4.223923 CAGTTTCCCATGTAGTCCTTCTCT 59.776 45.833 0.00 0.00 0.00 3.10
3302 3956 4.750021 TCTCTTTCATCCACCTCATCAG 57.250 45.455 0.00 0.00 0.00 2.90
3351 4009 9.453572 TTGTTGCTAAGTGATCATCTCTTAATT 57.546 29.630 9.83 0.00 33.66 1.40
3366 4049 6.299805 TGATGAGAGGTATTGTTGCTAAGT 57.700 37.500 0.00 0.00 0.00 2.24
3485 4168 8.517878 GGAGATGCCGTAATATGTTACTAGTTA 58.482 37.037 0.00 0.00 38.41 2.24
3491 4174 6.620733 GCATTGGAGATGCCGTAATATGTTAC 60.621 42.308 2.43 2.43 40.66 2.50
3492 4175 5.411361 GCATTGGAGATGCCGTAATATGTTA 59.589 40.000 0.00 0.00 40.66 2.41
3493 4176 4.216257 GCATTGGAGATGCCGTAATATGTT 59.784 41.667 0.00 0.00 40.66 2.71
3494 4177 3.753272 GCATTGGAGATGCCGTAATATGT 59.247 43.478 0.00 0.00 40.66 2.29
3495 4178 4.346734 GCATTGGAGATGCCGTAATATG 57.653 45.455 0.00 0.00 40.66 1.78
3504 4187 2.189499 GGGTCGGCATTGGAGATGC 61.189 63.158 2.50 2.50 43.85 3.91
3505 4188 1.889105 CGGGTCGGCATTGGAGATG 60.889 63.158 0.00 0.00 0.00 2.90
3506 4189 1.046472 TACGGGTCGGCATTGGAGAT 61.046 55.000 0.00 0.00 0.00 2.75
3507 4190 1.259142 TTACGGGTCGGCATTGGAGA 61.259 55.000 0.00 0.00 0.00 3.71
3508 4191 0.391927 TTTACGGGTCGGCATTGGAG 60.392 55.000 0.00 0.00 0.00 3.86
3509 4192 0.253610 ATTTACGGGTCGGCATTGGA 59.746 50.000 0.00 0.00 0.00 3.53
3510 4193 0.661020 GATTTACGGGTCGGCATTGG 59.339 55.000 0.00 0.00 0.00 3.16
3511 4194 0.661020 GGATTTACGGGTCGGCATTG 59.339 55.000 0.00 0.00 0.00 2.82
3512 4195 0.253610 TGGATTTACGGGTCGGCATT 59.746 50.000 0.00 0.00 0.00 3.56
3513 4196 0.463116 GTGGATTTACGGGTCGGCAT 60.463 55.000 0.00 0.00 0.00 4.40
3514 4197 1.078988 GTGGATTTACGGGTCGGCA 60.079 57.895 0.00 0.00 0.00 5.69
3515 4198 1.816679 GGTGGATTTACGGGTCGGC 60.817 63.158 0.00 0.00 0.00 5.54
3516 4199 1.153309 GGGTGGATTTACGGGTCGG 60.153 63.158 0.00 0.00 0.00 4.79
3517 4200 1.153309 GGGGTGGATTTACGGGTCG 60.153 63.158 0.00 0.00 0.00 4.79
3518 4201 0.179702 GAGGGGTGGATTTACGGGTC 59.820 60.000 0.00 0.00 0.00 4.46
3519 4202 0.253020 AGAGGGGTGGATTTACGGGT 60.253 55.000 0.00 0.00 0.00 5.28
3520 4203 0.468648 GAGAGGGGTGGATTTACGGG 59.531 60.000 0.00 0.00 0.00 5.28
3521 4204 0.468648 GGAGAGGGGTGGATTTACGG 59.531 60.000 0.00 0.00 0.00 4.02
3522 4205 0.468648 GGGAGAGGGGTGGATTTACG 59.531 60.000 0.00 0.00 0.00 3.18
3523 4206 0.844660 GGGGAGAGGGGTGGATTTAC 59.155 60.000 0.00 0.00 0.00 2.01
3524 4207 0.328158 GGGGGAGAGGGGTGGATTTA 60.328 60.000 0.00 0.00 0.00 1.40
3525 4208 1.622752 GGGGGAGAGGGGTGGATTT 60.623 63.158 0.00 0.00 0.00 2.17
3526 4209 2.044620 GGGGGAGAGGGGTGGATT 59.955 66.667 0.00 0.00 0.00 3.01
3527 4210 2.644628 GATGGGGGAGAGGGGTGGAT 62.645 65.000 0.00 0.00 0.00 3.41
3528 4211 3.300962 ATGGGGGAGAGGGGTGGA 61.301 66.667 0.00 0.00 0.00 4.02
3529 4212 2.774351 GATGGGGGAGAGGGGTGG 60.774 72.222 0.00 0.00 0.00 4.61
3530 4213 2.774351 GGATGGGGGAGAGGGGTG 60.774 72.222 0.00 0.00 0.00 4.61
3531 4214 4.499116 CGGATGGGGGAGAGGGGT 62.499 72.222 0.00 0.00 0.00 4.95
3532 4215 4.499116 ACGGATGGGGGAGAGGGG 62.499 72.222 0.00 0.00 0.00 4.79
3533 4216 2.844839 GACGGATGGGGGAGAGGG 60.845 72.222 0.00 0.00 0.00 4.30
3534 4217 2.844839 GGACGGATGGGGGAGAGG 60.845 72.222 0.00 0.00 0.00 3.69
3535 4218 2.041922 TGGACGGATGGGGGAGAG 60.042 66.667 0.00 0.00 0.00 3.20
3536 4219 2.365105 GTGGACGGATGGGGGAGA 60.365 66.667 0.00 0.00 0.00 3.71
3537 4220 3.849951 CGTGGACGGATGGGGGAG 61.850 72.222 0.00 0.00 35.37 4.30
3548 4231 1.911766 TCCTTCCCTGTCCGTGGAC 60.912 63.158 12.17 12.17 44.77 4.02
3549 4232 1.911766 GTCCTTCCCTGTCCGTGGA 60.912 63.158 0.00 0.00 0.00 4.02
3550 4233 2.663196 GTCCTTCCCTGTCCGTGG 59.337 66.667 0.00 0.00 0.00 4.94
3551 4234 2.261671 CGTCCTTCCCTGTCCGTG 59.738 66.667 0.00 0.00 0.00 4.94
3552 4235 2.203596 ACGTCCTTCCCTGTCCGT 60.204 61.111 0.00 0.00 0.00 4.69
3553 4236 2.261671 CACGTCCTTCCCTGTCCG 59.738 66.667 0.00 0.00 0.00 4.79
3554 4237 1.186267 AGACACGTCCTTCCCTGTCC 61.186 60.000 0.00 0.00 34.71 4.02
3555 4238 1.542492 TAGACACGTCCTTCCCTGTC 58.458 55.000 0.00 0.00 34.42 3.51
3556 4239 1.825474 CATAGACACGTCCTTCCCTGT 59.175 52.381 0.00 0.00 0.00 4.00
3557 4240 1.137086 CCATAGACACGTCCTTCCCTG 59.863 57.143 0.00 0.00 0.00 4.45
3558 4241 1.006758 TCCATAGACACGTCCTTCCCT 59.993 52.381 0.00 0.00 0.00 4.20
3559 4242 1.136500 GTCCATAGACACGTCCTTCCC 59.864 57.143 0.00 0.00 42.99 3.97
3560 4243 2.580966 GTCCATAGACACGTCCTTCC 57.419 55.000 0.00 0.00 42.99 3.46
3570 4253 1.412710 TCCGCATCCTTGTCCATAGAC 59.587 52.381 0.00 0.00 43.83 2.59
3571 4254 1.788229 TCCGCATCCTTGTCCATAGA 58.212 50.000 0.00 0.00 0.00 1.98
3572 4255 2.103094 TCTTCCGCATCCTTGTCCATAG 59.897 50.000 0.00 0.00 0.00 2.23
3573 4256 2.115427 TCTTCCGCATCCTTGTCCATA 58.885 47.619 0.00 0.00 0.00 2.74
3574 4257 0.911769 TCTTCCGCATCCTTGTCCAT 59.088 50.000 0.00 0.00 0.00 3.41
3575 4258 0.036388 GTCTTCCGCATCCTTGTCCA 60.036 55.000 0.00 0.00 0.00 4.02
3576 4259 1.084370 CGTCTTCCGCATCCTTGTCC 61.084 60.000 0.00 0.00 0.00 4.02
3577 4260 1.084370 CCGTCTTCCGCATCCTTGTC 61.084 60.000 0.00 0.00 34.38 3.18
3578 4261 1.079127 CCGTCTTCCGCATCCTTGT 60.079 57.895 0.00 0.00 34.38 3.16
3579 4262 1.079127 ACCGTCTTCCGCATCCTTG 60.079 57.895 0.00 0.00 34.38 3.61
3580 4263 1.218316 GACCGTCTTCCGCATCCTT 59.782 57.895 0.00 0.00 34.38 3.36
3581 4264 1.330655 ATGACCGTCTTCCGCATCCT 61.331 55.000 0.00 0.00 34.38 3.24
3582 4265 0.876342 GATGACCGTCTTCCGCATCC 60.876 60.000 0.00 0.00 32.91 3.51
3583 4266 0.103208 AGATGACCGTCTTCCGCATC 59.897 55.000 10.10 0.00 36.73 3.91
3584 4267 1.399714 TAGATGACCGTCTTCCGCAT 58.600 50.000 10.10 0.00 34.38 4.73
3585 4268 1.179152 TTAGATGACCGTCTTCCGCA 58.821 50.000 10.10 0.00 34.38 5.69
3586 4269 2.128035 CATTAGATGACCGTCTTCCGC 58.872 52.381 10.10 0.00 34.38 5.54
3587 4270 2.128035 GCATTAGATGACCGTCTTCCG 58.872 52.381 10.10 0.48 0.00 4.30
3588 4271 3.126831 CAGCATTAGATGACCGTCTTCC 58.873 50.000 10.10 0.00 31.30 3.46
3589 4272 2.541762 GCAGCATTAGATGACCGTCTTC 59.458 50.000 6.35 6.35 31.30 2.87
3590 4273 2.555199 GCAGCATTAGATGACCGTCTT 58.445 47.619 0.00 0.00 31.30 3.01
3591 4274 1.202580 GGCAGCATTAGATGACCGTCT 60.203 52.381 0.00 0.00 31.32 4.18
3592 4275 1.221414 GGCAGCATTAGATGACCGTC 58.779 55.000 0.00 0.00 31.32 4.79
3593 4276 3.386543 GGCAGCATTAGATGACCGT 57.613 52.632 0.00 0.00 31.32 4.83
3607 4290 1.531677 CGTTGAAATGTATGCGGGCAG 60.532 52.381 0.00 0.00 0.00 4.85
3608 4291 0.449786 CGTTGAAATGTATGCGGGCA 59.550 50.000 0.00 0.00 0.00 5.36
3609 4292 0.730265 TCGTTGAAATGTATGCGGGC 59.270 50.000 0.00 0.00 0.00 6.13
3610 4293 2.006888 AGTCGTTGAAATGTATGCGGG 58.993 47.619 0.00 0.00 0.00 6.13
3611 4294 5.403897 AATAGTCGTTGAAATGTATGCGG 57.596 39.130 0.00 0.00 0.00 5.69
3612 4295 8.721476 GTTTAAATAGTCGTTGAAATGTATGCG 58.279 33.333 0.00 0.00 0.00 4.73
3613 4296 9.006215 GGTTTAAATAGTCGTTGAAATGTATGC 57.994 33.333 0.00 0.00 0.00 3.14
3616 4299 9.881529 GTTGGTTTAAATAGTCGTTGAAATGTA 57.118 29.630 0.00 0.00 0.00 2.29
3617 4300 7.863877 GGTTGGTTTAAATAGTCGTTGAAATGT 59.136 33.333 0.00 0.00 0.00 2.71
3618 4301 7.863375 TGGTTGGTTTAAATAGTCGTTGAAATG 59.137 33.333 0.00 0.00 0.00 2.32
3619 4302 7.863877 GTGGTTGGTTTAAATAGTCGTTGAAAT 59.136 33.333 0.00 0.00 0.00 2.17
3620 4303 7.148120 TGTGGTTGGTTTAAATAGTCGTTGAAA 60.148 33.333 0.00 0.00 0.00 2.69
3621 4304 6.318144 TGTGGTTGGTTTAAATAGTCGTTGAA 59.682 34.615 0.00 0.00 0.00 2.69
3622 4305 5.821470 TGTGGTTGGTTTAAATAGTCGTTGA 59.179 36.000 0.00 0.00 0.00 3.18
3623 4306 5.910723 GTGTGGTTGGTTTAAATAGTCGTTG 59.089 40.000 0.00 0.00 0.00 4.10
3624 4307 5.277442 CGTGTGGTTGGTTTAAATAGTCGTT 60.277 40.000 0.00 0.00 0.00 3.85
3625 4308 4.211794 CGTGTGGTTGGTTTAAATAGTCGT 59.788 41.667 0.00 0.00 0.00 4.34
3626 4309 4.448395 TCGTGTGGTTGGTTTAAATAGTCG 59.552 41.667 0.00 0.00 0.00 4.18
3627 4310 5.927954 TCGTGTGGTTGGTTTAAATAGTC 57.072 39.130 0.00 0.00 0.00 2.59
3628 4311 6.696441 TTTCGTGTGGTTGGTTTAAATAGT 57.304 33.333 0.00 0.00 0.00 2.12
3629 4312 7.060174 CGAATTTCGTGTGGTTGGTTTAAATAG 59.940 37.037 10.61 0.00 34.72 1.73
3630 4313 6.856938 CGAATTTCGTGTGGTTGGTTTAAATA 59.143 34.615 10.61 0.00 34.72 1.40
3631 4314 5.688176 CGAATTTCGTGTGGTTGGTTTAAAT 59.312 36.000 10.61 0.00 34.72 1.40
3632 4315 5.035443 CGAATTTCGTGTGGTTGGTTTAAA 58.965 37.500 10.61 0.00 34.72 1.52
3633 4316 4.599047 CGAATTTCGTGTGGTTGGTTTAA 58.401 39.130 10.61 0.00 34.72 1.52
3634 4317 4.212213 CGAATTTCGTGTGGTTGGTTTA 57.788 40.909 10.61 0.00 34.72 2.01
3635 4318 3.073144 CGAATTTCGTGTGGTTGGTTT 57.927 42.857 10.61 0.00 34.72 3.27
3636 4319 2.766970 CGAATTTCGTGTGGTTGGTT 57.233 45.000 10.61 0.00 34.72 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.