Multiple sequence alignment - TraesCS1D01G191700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G191700 chr1D 100.000 2654 0 0 1 2654 267381712 267379059 0.000000e+00 4902
1 TraesCS1D01G191700 chr1D 96.190 105 4 0 1433 1537 474916822 474916926 3.510000e-39 172
2 TraesCS1D01G191700 chr1D 91.228 114 8 1 1267 1380 474916703 474916814 1.270000e-33 154
3 TraesCS1D01G191700 chr1A 94.409 1556 79 4 814 2364 335830714 335832266 0.000000e+00 2385
4 TraesCS1D01G191700 chr1A 94.000 250 14 1 1 249 335830022 335830271 6.930000e-101 377
5 TraesCS1D01G191700 chr1A 88.255 298 18 10 2359 2652 335832310 335832594 9.100000e-90 340
6 TraesCS1D01G191700 chr1A 88.325 197 15 3 291 487 335830378 335830566 2.050000e-56 230
7 TraesCS1D01G191700 chr1A 88.889 153 7 7 645 789 572892399 572892549 2.100000e-41 180
8 TraesCS1D01G191700 chr1B 94.072 1535 68 14 843 2361 346168538 346170065 0.000000e+00 2309
9 TraesCS1D01G191700 chr1B 86.913 298 21 12 2359 2652 346170112 346170395 4.260000e-83 318
10 TraesCS1D01G191700 chr1B 91.275 149 11 2 639 787 579977403 579977257 4.480000e-48 202
11 TraesCS1D01G191700 chr7D 86.395 294 35 2 3 292 552969470 552969178 1.530000e-82 316
12 TraesCS1D01G191700 chr7D 95.333 150 4 3 639 787 93031778 93031925 4.420000e-58 235
13 TraesCS1D01G191700 chr7D 96.154 104 4 0 1433 1536 293591779 293591676 1.260000e-38 171
14 TraesCS1D01G191700 chr7D 91.071 112 10 0 1269 1380 276474748 276474637 4.580000e-33 152
15 TraesCS1D01G191700 chr7B 85.135 296 38 3 1 292 598481479 598481186 5.550000e-77 298
16 TraesCS1D01G191700 chr7B 94.667 150 6 2 639 787 733328615 733328467 5.710000e-57 231
17 TraesCS1D01G191700 chr7A 83.594 256 36 5 1 250 143382268 143382523 4.420000e-58 235
18 TraesCS1D01G191700 chr7A 92.254 142 9 2 647 787 207090485 207090625 1.610000e-47 200
19 TraesCS1D01G191700 chr7A 93.684 95 6 0 693 787 448104027 448103933 2.750000e-30 143
20 TraesCS1D01G191700 chr7A 96.875 64 2 0 724 787 634307785 634307848 1.000000e-19 108
21 TraesCS1D01G191700 chr2B 94.667 150 5 3 639 787 622636637 622636490 2.050000e-56 230
22 TraesCS1D01G191700 chr6D 89.130 184 8 6 615 787 121330803 121330621 4.450000e-53 219
23 TraesCS1D01G191700 chr6D 90.351 114 11 0 1267 1380 263961542 263961655 1.650000e-32 150
24 TraesCS1D01G191700 chr3B 78.667 300 53 10 1 292 584014319 584014023 3.490000e-44 189
25 TraesCS1D01G191700 chr3B 82.486 177 28 2 1 176 584014392 584014218 4.580000e-33 152
26 TraesCS1D01G191700 chr5A 86.441 177 11 4 1267 1442 37968033 37967869 5.840000e-42 182
27 TraesCS1D01G191700 chr5D 97.143 105 3 0 1433 1537 563593025 563593129 7.550000e-41 178
28 TraesCS1D01G191700 chr5D 96.190 105 4 0 1433 1537 213075134 213075030 3.510000e-39 172
29 TraesCS1D01G191700 chr5D 91.150 113 8 1 1267 1379 563592906 563593016 4.580000e-33 152
30 TraesCS1D01G191700 chr4D 97.143 105 3 0 1433 1537 348307230 348307126 7.550000e-41 178
31 TraesCS1D01G191700 chr4D 92.105 114 9 0 1267 1380 348307351 348307238 7.600000e-36 161
32 TraesCS1D01G191700 chr2D 97.143 105 3 0 1433 1537 33946003 33946107 7.550000e-41 178
33 TraesCS1D01G191700 chr2D 96.190 105 4 0 1433 1537 56188800 56188904 3.510000e-39 172
34 TraesCS1D01G191700 chr2D 91.228 114 10 0 1267 1380 56188679 56188792 3.540000e-34 156
35 TraesCS1D01G191700 chr5B 90.351 114 8 1 1267 1380 45021655 45021765 2.130000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G191700 chr1D 267379059 267381712 2653 True 4902.0 4902 100.00000 1 2654 1 chr1D.!!$R1 2653
1 TraesCS1D01G191700 chr1A 335830022 335832594 2572 False 833.0 2385 91.24725 1 2652 4 chr1A.!!$F2 2651
2 TraesCS1D01G191700 chr1B 346168538 346170395 1857 False 1313.5 2309 90.49250 843 2652 2 chr1B.!!$F1 1809

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
758 851 0.037734 AAGGGCCTGTAAAACTCCCG 59.962 55.0 6.92 0.0 41.76 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2444 2629 1.002033 GTTGTGAAGTGCTTGCTCCAG 60.002 52.381 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.157834 TTCGCATGAACGGTTGTAGT 57.842 45.000 0.00 0.00 0.00 2.73
101 102 9.643693 CTTTCATATGGACAATTGTAGCTTTTT 57.356 29.630 11.95 0.00 0.00 1.94
102 103 9.638239 TTTCATATGGACAATTGTAGCTTTTTC 57.362 29.630 11.95 0.00 0.00 2.29
103 104 7.771183 TCATATGGACAATTGTAGCTTTTTCC 58.229 34.615 11.95 6.41 0.00 3.13
111 112 2.649190 TGTAGCTTTTTCCAGTGCACA 58.351 42.857 21.04 0.00 0.00 4.57
125 126 0.813610 TGCACAGTGTCCGGTTGAAG 60.814 55.000 0.00 0.00 0.00 3.02
137 138 4.446719 GTCCGGTTGAAGCTTTATATACCG 59.553 45.833 20.34 20.34 44.77 4.02
138 139 4.099881 TCCGGTTGAAGCTTTATATACCGT 59.900 41.667 23.43 0.00 43.96 4.83
167 169 2.616842 AGCTTTCGAATCAAACGGTTGT 59.383 40.909 13.90 0.00 36.07 3.32
192 194 2.690653 TTTGGGTCCTCGGTTGCAGG 62.691 60.000 0.00 0.00 0.00 4.85
196 198 1.153349 GTCCTCGGTTGCAGGATCC 60.153 63.158 2.48 2.48 42.24 3.36
249 251 2.419297 GGAGGAGATGGTTGTAGCAGTG 60.419 54.545 0.00 0.00 0.00 3.66
250 252 1.556911 AGGAGATGGTTGTAGCAGTGG 59.443 52.381 0.00 0.00 0.00 4.00
251 253 1.407437 GGAGATGGTTGTAGCAGTGGG 60.407 57.143 0.00 0.00 0.00 4.61
252 254 0.620556 AGATGGTTGTAGCAGTGGGG 59.379 55.000 0.00 0.00 0.00 4.96
253 255 0.394352 GATGGTTGTAGCAGTGGGGG 60.394 60.000 0.00 0.00 0.00 5.40
254 256 0.844661 ATGGTTGTAGCAGTGGGGGA 60.845 55.000 0.00 0.00 0.00 4.81
255 257 1.299976 GGTTGTAGCAGTGGGGGAG 59.700 63.158 0.00 0.00 0.00 4.30
256 258 1.299976 GTTGTAGCAGTGGGGGAGG 59.700 63.158 0.00 0.00 0.00 4.30
257 259 1.159905 TTGTAGCAGTGGGGGAGGA 59.840 57.895 0.00 0.00 0.00 3.71
258 260 0.909610 TTGTAGCAGTGGGGGAGGAG 60.910 60.000 0.00 0.00 0.00 3.69
259 261 2.066999 GTAGCAGTGGGGGAGGAGG 61.067 68.421 0.00 0.00 0.00 4.30
278 280 4.312231 CGCGCCGCCATGGTTATG 62.312 66.667 14.67 2.67 41.21 1.90
303 382 2.742372 CAGTGGCGAAAGGGACCG 60.742 66.667 0.00 0.00 0.00 4.79
336 415 2.144078 TGGAAGAAGTGGGCGTGGA 61.144 57.895 0.00 0.00 0.00 4.02
352 431 2.584391 GGACGCTGAGGTTGGAGGT 61.584 63.158 0.00 0.00 0.00 3.85
387 466 3.085119 TTTAGGGCTAGCCGGCGAC 62.085 63.158 27.24 14.54 39.52 5.19
411 490 4.612943 CGGTCTAAAGGAGTAAGATGAGC 58.387 47.826 0.00 0.00 0.00 4.26
412 491 4.339814 CGGTCTAAAGGAGTAAGATGAGCT 59.660 45.833 0.00 0.00 0.00 4.09
417 496 2.744760 AGGAGTAAGATGAGCTGCTGA 58.255 47.619 7.01 0.00 29.85 4.26
418 497 2.694628 AGGAGTAAGATGAGCTGCTGAG 59.305 50.000 7.01 0.00 29.85 3.35
419 498 2.692557 GGAGTAAGATGAGCTGCTGAGA 59.307 50.000 7.01 0.00 0.00 3.27
420 499 3.243501 GGAGTAAGATGAGCTGCTGAGAG 60.244 52.174 7.01 0.00 0.00 3.20
421 500 3.630168 AGTAAGATGAGCTGCTGAGAGA 58.370 45.455 7.01 0.00 0.00 3.10
423 502 2.440517 AGATGAGCTGCTGAGAGAGA 57.559 50.000 7.01 0.00 0.00 3.10
426 505 1.753930 TGAGCTGCTGAGAGAGAGAG 58.246 55.000 7.01 0.00 0.00 3.20
427 506 1.281577 TGAGCTGCTGAGAGAGAGAGA 59.718 52.381 7.01 0.00 0.00 3.10
428 507 2.290832 TGAGCTGCTGAGAGAGAGAGAA 60.291 50.000 7.01 0.00 0.00 2.87
431 510 2.357009 GCTGCTGAGAGAGAGAGAAGAG 59.643 54.545 0.00 0.00 0.00 2.85
432 511 2.947652 CTGCTGAGAGAGAGAGAAGAGG 59.052 54.545 0.00 0.00 0.00 3.69
433 512 2.575735 TGCTGAGAGAGAGAGAAGAGGA 59.424 50.000 0.00 0.00 0.00 3.71
434 513 3.202818 TGCTGAGAGAGAGAGAAGAGGAT 59.797 47.826 0.00 0.00 0.00 3.24
435 514 3.817647 GCTGAGAGAGAGAGAAGAGGATC 59.182 52.174 0.00 0.00 0.00 3.36
436 515 4.060900 CTGAGAGAGAGAGAAGAGGATCG 58.939 52.174 0.00 0.00 42.67 3.69
437 516 3.181455 TGAGAGAGAGAGAAGAGGATCGG 60.181 52.174 0.00 0.00 42.67 4.18
438 517 2.106511 AGAGAGAGAGAAGAGGATCGGG 59.893 54.545 0.00 0.00 42.67 5.14
444 523 3.028130 AGAGAAGAGGATCGGGAGAAAC 58.972 50.000 0.00 0.00 45.37 2.78
479 558 2.285144 GAAGGGGGTCGGGAGGAA 60.285 66.667 0.00 0.00 0.00 3.36
480 559 2.285442 AAGGGGGTCGGGAGGAAG 60.285 66.667 0.00 0.00 0.00 3.46
481 560 2.817420 GAAGGGGGTCGGGAGGAAGA 62.817 65.000 0.00 0.00 0.00 2.87
482 561 2.285144 GGGGGTCGGGAGGAAGAA 60.285 66.667 0.00 0.00 0.00 2.52
483 562 2.368011 GGGGGTCGGGAGGAAGAAG 61.368 68.421 0.00 0.00 0.00 2.85
484 563 1.305887 GGGGTCGGGAGGAAGAAGA 60.306 63.158 0.00 0.00 0.00 2.87
485 564 1.615165 GGGGTCGGGAGGAAGAAGAC 61.615 65.000 0.00 0.00 0.00 3.01
486 565 0.903454 GGGTCGGGAGGAAGAAGACA 60.903 60.000 0.00 0.00 33.84 3.41
487 566 0.974383 GGTCGGGAGGAAGAAGACAA 59.026 55.000 0.00 0.00 33.84 3.18
488 567 1.066787 GGTCGGGAGGAAGAAGACAAG 60.067 57.143 0.00 0.00 33.84 3.16
489 568 1.066787 GTCGGGAGGAAGAAGACAAGG 60.067 57.143 0.00 0.00 32.57 3.61
490 569 1.203137 TCGGGAGGAAGAAGACAAGGA 60.203 52.381 0.00 0.00 0.00 3.36
491 570 1.205893 CGGGAGGAAGAAGACAAGGAG 59.794 57.143 0.00 0.00 0.00 3.69
492 571 2.261729 GGGAGGAAGAAGACAAGGAGT 58.738 52.381 0.00 0.00 0.00 3.85
493 572 2.027653 GGGAGGAAGAAGACAAGGAGTG 60.028 54.545 0.00 0.00 0.00 3.51
494 573 2.027653 GGAGGAAGAAGACAAGGAGTGG 60.028 54.545 0.00 0.00 0.00 4.00
495 574 2.900546 GAGGAAGAAGACAAGGAGTGGA 59.099 50.000 0.00 0.00 0.00 4.02
496 575 2.903135 AGGAAGAAGACAAGGAGTGGAG 59.097 50.000 0.00 0.00 0.00 3.86
497 576 2.900546 GGAAGAAGACAAGGAGTGGAGA 59.099 50.000 0.00 0.00 0.00 3.71
498 577 3.056179 GGAAGAAGACAAGGAGTGGAGAG 60.056 52.174 0.00 0.00 0.00 3.20
499 578 3.534357 AGAAGACAAGGAGTGGAGAGA 57.466 47.619 0.00 0.00 0.00 3.10
500 579 3.850752 AGAAGACAAGGAGTGGAGAGAA 58.149 45.455 0.00 0.00 0.00 2.87
501 580 3.831911 AGAAGACAAGGAGTGGAGAGAAG 59.168 47.826 0.00 0.00 0.00 2.85
502 581 2.534990 AGACAAGGAGTGGAGAGAAGG 58.465 52.381 0.00 0.00 0.00 3.46
503 582 1.552792 GACAAGGAGTGGAGAGAAGGG 59.447 57.143 0.00 0.00 0.00 3.95
504 583 0.908198 CAAGGAGTGGAGAGAAGGGG 59.092 60.000 0.00 0.00 0.00 4.79
505 584 0.252927 AAGGAGTGGAGAGAAGGGGG 60.253 60.000 0.00 0.00 0.00 5.40
506 585 1.081277 GGAGTGGAGAGAAGGGGGT 59.919 63.158 0.00 0.00 0.00 4.95
507 586 0.978667 GGAGTGGAGAGAAGGGGGTC 60.979 65.000 0.00 0.00 0.00 4.46
508 587 1.305381 AGTGGAGAGAAGGGGGTCG 60.305 63.158 0.00 0.00 0.00 4.79
509 588 2.038975 TGGAGAGAAGGGGGTCGG 59.961 66.667 0.00 0.00 0.00 4.79
510 589 2.764547 GGAGAGAAGGGGGTCGGG 60.765 72.222 0.00 0.00 0.00 5.14
511 590 2.363361 GAGAGAAGGGGGTCGGGA 59.637 66.667 0.00 0.00 0.00 5.14
512 591 1.758906 GAGAGAAGGGGGTCGGGAG 60.759 68.421 0.00 0.00 0.00 4.30
513 592 2.764547 GAGAAGGGGGTCGGGAGG 60.765 72.222 0.00 0.00 0.00 4.30
514 593 3.281787 AGAAGGGGGTCGGGAGGA 61.282 66.667 0.00 0.00 0.00 3.71
523 602 0.974383 GGTCGGGAGGAAGAAGACAA 59.026 55.000 0.00 0.00 33.84 3.18
583 676 0.744874 CACGGGGTGAGATGTACGAT 59.255 55.000 0.00 0.00 35.23 3.73
589 682 2.628657 GGGTGAGATGTACGATAGCCTT 59.371 50.000 0.00 0.00 42.67 4.35
621 714 9.494479 TTTTAACTAGATGTACGATGAGTAACG 57.506 33.333 0.00 0.00 37.02 3.18
622 715 5.093169 ACTAGATGTACGATGAGTAACGC 57.907 43.478 0.00 0.00 37.02 4.84
623 716 4.815308 ACTAGATGTACGATGAGTAACGCT 59.185 41.667 0.00 0.00 37.02 5.07
624 717 5.987953 ACTAGATGTACGATGAGTAACGCTA 59.012 40.000 0.00 0.00 37.02 4.26
625 718 5.093169 AGATGTACGATGAGTAACGCTAC 57.907 43.478 0.00 0.00 37.02 3.58
626 719 4.573607 AGATGTACGATGAGTAACGCTACA 59.426 41.667 0.00 0.00 37.02 2.74
627 720 4.888038 TGTACGATGAGTAACGCTACAT 57.112 40.909 0.00 0.00 37.02 2.29
628 721 4.840911 TGTACGATGAGTAACGCTACATC 58.159 43.478 0.00 0.00 37.02 3.06
632 725 2.447089 TGAGTAACGCTACATCGACG 57.553 50.000 0.00 0.00 0.00 5.12
633 726 1.063027 TGAGTAACGCTACATCGACGG 59.937 52.381 0.00 0.00 0.00 4.79
634 727 1.328680 GAGTAACGCTACATCGACGGA 59.671 52.381 0.00 0.00 0.00 4.69
635 728 1.739466 AGTAACGCTACATCGACGGAA 59.261 47.619 0.00 0.00 0.00 4.30
636 729 2.107178 GTAACGCTACATCGACGGAAG 58.893 52.381 0.00 0.00 0.00 3.46
637 730 0.806868 AACGCTACATCGACGGAAGA 59.193 50.000 0.00 0.00 0.00 2.87
638 731 1.022735 ACGCTACATCGACGGAAGAT 58.977 50.000 0.00 0.00 0.00 2.40
639 732 1.404391 ACGCTACATCGACGGAAGATT 59.596 47.619 0.00 0.00 0.00 2.40
640 733 2.615447 ACGCTACATCGACGGAAGATTA 59.385 45.455 0.00 0.00 0.00 1.75
641 734 2.971915 CGCTACATCGACGGAAGATTAC 59.028 50.000 0.00 0.00 0.00 1.89
642 735 2.971915 GCTACATCGACGGAAGATTACG 59.028 50.000 0.00 0.00 41.22 3.18
650 743 2.596904 CGGAAGATTACGTGGGTGAT 57.403 50.000 0.00 0.00 0.00 3.06
651 744 3.720949 CGGAAGATTACGTGGGTGATA 57.279 47.619 0.00 0.00 0.00 2.15
652 745 3.378339 CGGAAGATTACGTGGGTGATAC 58.622 50.000 0.00 0.00 0.00 2.24
653 746 3.067742 CGGAAGATTACGTGGGTGATACT 59.932 47.826 0.00 0.00 0.00 2.12
654 747 4.369182 GGAAGATTACGTGGGTGATACTG 58.631 47.826 0.00 0.00 0.00 2.74
655 748 4.098960 GGAAGATTACGTGGGTGATACTGA 59.901 45.833 0.00 0.00 0.00 3.41
656 749 5.221461 GGAAGATTACGTGGGTGATACTGAT 60.221 44.000 0.00 0.00 0.00 2.90
657 750 5.871396 AGATTACGTGGGTGATACTGATT 57.129 39.130 0.00 0.00 0.00 2.57
658 751 6.235231 AGATTACGTGGGTGATACTGATTT 57.765 37.500 0.00 0.00 0.00 2.17
659 752 6.049149 AGATTACGTGGGTGATACTGATTTG 58.951 40.000 0.00 0.00 0.00 2.32
660 753 3.695830 ACGTGGGTGATACTGATTTGT 57.304 42.857 0.00 0.00 0.00 2.83
661 754 3.596214 ACGTGGGTGATACTGATTTGTC 58.404 45.455 0.00 0.00 0.00 3.18
662 755 3.007506 ACGTGGGTGATACTGATTTGTCA 59.992 43.478 0.00 0.00 0.00 3.58
663 756 4.000325 CGTGGGTGATACTGATTTGTCAA 59.000 43.478 0.00 0.00 0.00 3.18
664 757 4.093408 CGTGGGTGATACTGATTTGTCAAG 59.907 45.833 0.00 0.00 0.00 3.02
665 758 5.003804 GTGGGTGATACTGATTTGTCAAGT 58.996 41.667 0.00 0.00 0.00 3.16
666 759 5.473504 GTGGGTGATACTGATTTGTCAAGTT 59.526 40.000 0.00 0.00 0.00 2.66
667 760 5.473162 TGGGTGATACTGATTTGTCAAGTTG 59.527 40.000 0.00 0.00 0.00 3.16
668 761 5.473504 GGGTGATACTGATTTGTCAAGTTGT 59.526 40.000 2.11 0.00 0.00 3.32
669 762 6.373779 GGTGATACTGATTTGTCAAGTTGTG 58.626 40.000 2.11 0.00 0.00 3.33
670 763 6.204688 GGTGATACTGATTTGTCAAGTTGTGA 59.795 38.462 2.11 0.00 0.00 3.58
671 764 7.094634 GGTGATACTGATTTGTCAAGTTGTGAT 60.095 37.037 2.11 0.00 38.90 3.06
672 765 8.292448 GTGATACTGATTTGTCAAGTTGTGATT 58.708 33.333 2.11 0.00 38.90 2.57
673 766 8.291740 TGATACTGATTTGTCAAGTTGTGATTG 58.708 33.333 2.11 0.00 38.90 2.67
674 767 6.698008 ACTGATTTGTCAAGTTGTGATTGA 57.302 33.333 2.11 0.00 38.90 2.57
675 768 7.099266 ACTGATTTGTCAAGTTGTGATTGAA 57.901 32.000 2.11 0.00 38.34 2.69
676 769 7.719483 ACTGATTTGTCAAGTTGTGATTGAAT 58.281 30.769 2.11 0.00 38.34 2.57
677 770 8.199449 ACTGATTTGTCAAGTTGTGATTGAATT 58.801 29.630 2.11 0.00 38.34 2.17
678 771 9.681692 CTGATTTGTCAAGTTGTGATTGAATTA 57.318 29.630 2.11 0.00 38.34 1.40
682 775 8.854979 TTGTCAAGTTGTGATTGAATTAAGTG 57.145 30.769 2.11 0.00 38.34 3.16
683 776 7.424803 TGTCAAGTTGTGATTGAATTAAGTGG 58.575 34.615 2.11 0.00 38.34 4.00
684 777 6.863126 GTCAAGTTGTGATTGAATTAAGTGGG 59.137 38.462 2.11 0.00 38.34 4.61
685 778 5.982890 AGTTGTGATTGAATTAAGTGGGG 57.017 39.130 0.00 0.00 0.00 4.96
686 779 5.640147 AGTTGTGATTGAATTAAGTGGGGA 58.360 37.500 0.00 0.00 0.00 4.81
687 780 5.711976 AGTTGTGATTGAATTAAGTGGGGAG 59.288 40.000 0.00 0.00 0.00 4.30
688 781 4.599041 TGTGATTGAATTAAGTGGGGAGG 58.401 43.478 0.00 0.00 0.00 4.30
689 782 3.954258 GTGATTGAATTAAGTGGGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
690 783 3.855599 TGATTGAATTAAGTGGGGAGGGA 59.144 43.478 0.00 0.00 0.00 4.20
691 784 3.732048 TTGAATTAAGTGGGGAGGGAC 57.268 47.619 0.00 0.00 0.00 4.46
692 785 1.557832 TGAATTAAGTGGGGAGGGACG 59.442 52.381 0.00 0.00 0.00 4.79
693 786 0.916809 AATTAAGTGGGGAGGGACGG 59.083 55.000 0.00 0.00 0.00 4.79
694 787 0.986550 ATTAAGTGGGGAGGGACGGG 60.987 60.000 0.00 0.00 0.00 5.28
718 811 2.887151 ACCCAGGTGAAAATCAGGAG 57.113 50.000 0.00 0.00 0.00 3.69
719 812 1.355720 ACCCAGGTGAAAATCAGGAGG 59.644 52.381 0.00 0.00 0.00 4.30
720 813 1.341383 CCCAGGTGAAAATCAGGAGGG 60.341 57.143 0.00 0.00 0.00 4.30
721 814 1.341383 CCAGGTGAAAATCAGGAGGGG 60.341 57.143 0.00 0.00 0.00 4.79
722 815 0.332972 AGGTGAAAATCAGGAGGGGC 59.667 55.000 0.00 0.00 0.00 5.80
723 816 1.032114 GGTGAAAATCAGGAGGGGCG 61.032 60.000 0.00 0.00 0.00 6.13
724 817 1.032114 GTGAAAATCAGGAGGGGCGG 61.032 60.000 0.00 0.00 0.00 6.13
725 818 1.204786 TGAAAATCAGGAGGGGCGGA 61.205 55.000 0.00 0.00 0.00 5.54
726 819 0.464554 GAAAATCAGGAGGGGCGGAG 60.465 60.000 0.00 0.00 0.00 4.63
727 820 0.914417 AAAATCAGGAGGGGCGGAGA 60.914 55.000 0.00 0.00 0.00 3.71
728 821 1.341156 AAATCAGGAGGGGCGGAGAG 61.341 60.000 0.00 0.00 0.00 3.20
729 822 2.243774 AATCAGGAGGGGCGGAGAGA 62.244 60.000 0.00 0.00 0.00 3.10
730 823 2.029892 ATCAGGAGGGGCGGAGAGAT 62.030 60.000 0.00 0.00 0.00 2.75
731 824 1.764054 CAGGAGGGGCGGAGAGATT 60.764 63.158 0.00 0.00 0.00 2.40
732 825 0.470080 CAGGAGGGGCGGAGAGATTA 60.470 60.000 0.00 0.00 0.00 1.75
733 826 0.489567 AGGAGGGGCGGAGAGATTAT 59.510 55.000 0.00 0.00 0.00 1.28
734 827 1.132689 AGGAGGGGCGGAGAGATTATT 60.133 52.381 0.00 0.00 0.00 1.40
735 828 2.111972 AGGAGGGGCGGAGAGATTATTA 59.888 50.000 0.00 0.00 0.00 0.98
736 829 2.498078 GGAGGGGCGGAGAGATTATTAG 59.502 54.545 0.00 0.00 0.00 1.73
737 830 2.498078 GAGGGGCGGAGAGATTATTAGG 59.502 54.545 0.00 0.00 0.00 2.69
738 831 2.111972 AGGGGCGGAGAGATTATTAGGA 59.888 50.000 0.00 0.00 0.00 2.94
739 832 2.904434 GGGGCGGAGAGATTATTAGGAA 59.096 50.000 0.00 0.00 0.00 3.36
740 833 3.326880 GGGGCGGAGAGATTATTAGGAAA 59.673 47.826 0.00 0.00 0.00 3.13
741 834 4.563786 GGGGCGGAGAGATTATTAGGAAAG 60.564 50.000 0.00 0.00 0.00 2.62
742 835 4.563786 GGGCGGAGAGATTATTAGGAAAGG 60.564 50.000 0.00 0.00 0.00 3.11
743 836 4.563786 GGCGGAGAGATTATTAGGAAAGGG 60.564 50.000 0.00 0.00 0.00 3.95
744 837 4.570930 CGGAGAGATTATTAGGAAAGGGC 58.429 47.826 0.00 0.00 0.00 5.19
745 838 4.563786 CGGAGAGATTATTAGGAAAGGGCC 60.564 50.000 0.00 0.00 0.00 5.80
746 839 4.599676 GGAGAGATTATTAGGAAAGGGCCT 59.400 45.833 0.00 0.00 42.15 5.19
747 840 5.513962 GGAGAGATTATTAGGAAAGGGCCTG 60.514 48.000 6.92 0.00 39.08 4.85
748 841 4.978388 AGAGATTATTAGGAAAGGGCCTGT 59.022 41.667 6.92 0.00 39.08 4.00
749 842 6.151049 AGAGATTATTAGGAAAGGGCCTGTA 58.849 40.000 6.92 0.00 39.08 2.74
750 843 6.619852 AGAGATTATTAGGAAAGGGCCTGTAA 59.380 38.462 6.92 3.48 39.08 2.41
751 844 7.128883 AGAGATTATTAGGAAAGGGCCTGTAAA 59.871 37.037 6.92 0.00 39.08 2.01
752 845 7.648770 AGATTATTAGGAAAGGGCCTGTAAAA 58.351 34.615 6.92 0.00 39.08 1.52
753 846 7.560262 AGATTATTAGGAAAGGGCCTGTAAAAC 59.440 37.037 6.92 0.00 39.08 2.43
754 847 4.734843 TTAGGAAAGGGCCTGTAAAACT 57.265 40.909 6.92 0.47 39.08 2.66
755 848 3.156288 AGGAAAGGGCCTGTAAAACTC 57.844 47.619 6.92 0.00 36.76 3.01
756 849 2.168496 GGAAAGGGCCTGTAAAACTCC 58.832 52.381 6.92 1.07 0.00 3.85
757 850 2.168496 GAAAGGGCCTGTAAAACTCCC 58.832 52.381 6.92 0.00 37.24 4.30
758 851 0.037734 AAGGGCCTGTAAAACTCCCG 59.962 55.000 6.92 0.00 41.76 5.14
759 852 1.131928 AGGGCCTGTAAAACTCCCGT 61.132 55.000 4.50 0.00 41.76 5.28
760 853 0.614812 GGGCCTGTAAAACTCCCGTA 59.385 55.000 0.84 0.00 0.00 4.02
761 854 1.003464 GGGCCTGTAAAACTCCCGTAA 59.997 52.381 0.84 0.00 0.00 3.18
762 855 2.353323 GGCCTGTAAAACTCCCGTAAG 58.647 52.381 0.00 0.00 0.00 2.34
763 856 2.027837 GGCCTGTAAAACTCCCGTAAGA 60.028 50.000 0.00 0.00 43.02 2.10
764 857 3.259902 GCCTGTAAAACTCCCGTAAGAG 58.740 50.000 0.00 0.00 43.02 2.85
765 858 3.858247 CCTGTAAAACTCCCGTAAGAGG 58.142 50.000 0.00 0.00 38.26 3.69
766 859 3.259902 CTGTAAAACTCCCGTAAGAGGC 58.740 50.000 0.00 0.00 38.26 4.70
767 860 2.027837 TGTAAAACTCCCGTAAGAGGCC 60.028 50.000 0.00 0.00 38.26 5.19
768 861 0.327259 AAAACTCCCGTAAGAGGCCC 59.673 55.000 0.00 0.00 38.26 5.80
769 862 1.896122 AAACTCCCGTAAGAGGCCCG 61.896 60.000 0.00 0.00 38.26 6.13
770 863 2.758737 CTCCCGTAAGAGGCCCGT 60.759 66.667 0.00 0.00 43.02 5.28
771 864 1.454479 CTCCCGTAAGAGGCCCGTA 60.454 63.158 0.00 0.00 43.02 4.02
772 865 1.732417 CTCCCGTAAGAGGCCCGTAC 61.732 65.000 0.00 3.13 43.02 3.67
774 867 2.409870 CCGTAAGAGGCCCGTACGT 61.410 63.158 25.49 0.00 46.71 3.57
775 868 1.508088 CGTAAGAGGCCCGTACGTT 59.492 57.895 22.13 3.10 44.38 3.99
776 869 0.109132 CGTAAGAGGCCCGTACGTTT 60.109 55.000 22.13 1.65 44.38 3.60
777 870 1.132262 CGTAAGAGGCCCGTACGTTTA 59.868 52.381 22.13 0.75 44.38 2.01
778 871 2.792542 CGTAAGAGGCCCGTACGTTTAG 60.793 54.545 22.13 0.00 44.38 1.85
779 872 0.108472 AAGAGGCCCGTACGTTTAGC 60.108 55.000 15.21 11.00 0.00 3.09
780 873 1.216178 GAGGCCCGTACGTTTAGCA 59.784 57.895 15.21 0.00 0.00 3.49
781 874 0.179092 GAGGCCCGTACGTTTAGCAT 60.179 55.000 15.21 9.00 0.00 3.79
782 875 0.251073 AGGCCCGTACGTTTAGCATT 59.749 50.000 15.21 1.61 0.00 3.56
783 876 1.089112 GGCCCGTACGTTTAGCATTT 58.911 50.000 15.21 0.00 0.00 2.32
784 877 1.469703 GGCCCGTACGTTTAGCATTTT 59.530 47.619 15.21 0.00 0.00 1.82
785 878 2.095110 GGCCCGTACGTTTAGCATTTTT 60.095 45.455 15.21 0.00 0.00 1.94
807 900 0.457853 TGTACGACAGGCTTGATCGC 60.458 55.000 16.49 6.26 39.47 4.58
817 935 2.745884 TTGATCGCCAGGCAACCG 60.746 61.111 13.30 0.00 37.17 4.44
819 937 4.778143 GATCGCCAGGCAACCGGT 62.778 66.667 13.30 0.00 37.17 5.28
839 957 2.656973 GCCGGGCACAAACGTTTG 60.657 61.111 33.52 33.52 43.62 2.93
840 958 2.656973 CCGGGCACAAACGTTTGC 60.657 61.111 34.70 25.17 41.79 3.68
856 975 1.965414 TTGCCTATCTCTTGTGGGGA 58.035 50.000 0.00 0.00 0.00 4.81
955 1074 2.748388 AGGCTATTACCACGAGGAAGT 58.252 47.619 5.68 0.00 38.69 3.01
1092 1220 1.354368 TCCACCACTTCCATCCTTTCC 59.646 52.381 0.00 0.00 0.00 3.13
1095 1223 0.394352 CCACTTCCATCCTTTCCCCG 60.394 60.000 0.00 0.00 0.00 5.73
1129 1257 4.717629 CCAAGCGACGACGAGCCA 62.718 66.667 12.29 0.00 42.66 4.75
1629 1757 2.581354 CCGGAGCTGTGGAAGGAG 59.419 66.667 0.00 0.00 0.00 3.69
1696 1824 5.904362 ATTTTCTCCACTGGAAATAGCAC 57.096 39.130 0.00 0.00 33.51 4.40
1768 1896 2.499197 TGAAACAATTCGCAGTGGCTA 58.501 42.857 0.00 0.00 38.46 3.93
1911 2040 2.439507 TCCTAAAGCAGATGGATGGGTC 59.560 50.000 0.00 0.00 0.00 4.46
1952 2081 0.684535 TGGTGACGCCATCTTCTTCA 59.315 50.000 2.83 0.00 43.61 3.02
2080 2213 3.266772 AGTCATGGCAGTGGAAATTCCTA 59.733 43.478 13.78 0.00 37.46 2.94
2201 2338 9.236691 GTTGTTATGTGCATAAATTGGTGATAG 57.763 33.333 6.24 0.00 35.30 2.08
2225 2362 2.052782 ACGGGCATACCAAAGGATTC 57.947 50.000 0.00 0.00 40.22 2.52
2301 2438 3.355378 TCCCAAACATCGAAAGCATGAT 58.645 40.909 0.00 0.00 0.00 2.45
2376 2561 9.629649 AGGGAGTTAAATATTATACAGGGATCA 57.370 33.333 0.00 0.00 0.00 2.92
2444 2629 0.464373 TCCTGCAATGGAATCGAGCC 60.464 55.000 0.00 0.00 32.39 4.70
2477 2662 8.396272 AGCACTTCACAACTATTCAAAGTAAT 57.604 30.769 0.00 0.00 0.00 1.89
2478 2663 9.502091 AGCACTTCACAACTATTCAAAGTAATA 57.498 29.630 0.00 0.00 0.00 0.98
2521 2706 5.232610 AGATCAAACGGAAGAGTAGTACG 57.767 43.478 0.00 0.00 0.00 3.67
2535 2720 9.398170 GAAGAGTAGTACGAGATACACTAGTAG 57.602 40.741 0.00 0.00 37.38 2.57
2537 2722 9.567776 AGAGTAGTACGAGATACACTAGTAGTA 57.432 37.037 1.57 1.31 39.68 1.82
2583 2768 7.708752 TGGAATCAAGTTGGTAATTTTCAACAC 59.291 33.333 19.06 0.00 43.91 3.32
2590 2775 5.578005 TGGTAATTTTCAACACGGAACAA 57.422 34.783 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 5.006746 GTCCATATGAAAGCTTCAACCGTAG 59.993 44.000 3.65 0.00 43.95 3.51
101 102 2.421314 CGGACACTGTGCACTGGA 59.579 61.111 25.15 1.81 0.00 3.86
102 103 2.666190 CCGGACACTGTGCACTGG 60.666 66.667 25.15 16.68 0.00 4.00
103 104 1.523711 AACCGGACACTGTGCACTG 60.524 57.895 20.83 20.83 0.00 3.66
111 112 2.922740 TAAAGCTTCAACCGGACACT 57.077 45.000 9.46 0.00 0.00 3.55
125 126 4.024302 GCTTCAACCCACGGTATATAAAGC 60.024 45.833 0.00 0.00 33.12 3.51
137 138 2.552315 TGATTCGAAAGCTTCAACCCAC 59.448 45.455 0.00 0.00 0.00 4.61
138 139 2.857483 TGATTCGAAAGCTTCAACCCA 58.143 42.857 0.00 0.00 0.00 4.51
167 169 1.061546 ACCGAGGACCCAAAAAGCTA 58.938 50.000 0.00 0.00 0.00 3.32
192 194 2.652590 AGCTTTGCTTCTCCATGGATC 58.347 47.619 16.63 5.74 33.89 3.36
261 263 4.312231 CATAACCATGGCGGCGCG 62.312 66.667 26.95 14.60 39.03 6.86
262 264 3.964875 CCATAACCATGGCGGCGC 61.965 66.667 26.17 26.17 45.29 6.53
278 280 0.109132 CTTTCGCCACTGGAAATGCC 60.109 55.000 0.00 0.00 33.32 4.40
285 287 2.359975 GGTCCCTTTCGCCACTGG 60.360 66.667 0.00 0.00 0.00 4.00
287 289 4.016706 CCGGTCCCTTTCGCCACT 62.017 66.667 0.00 0.00 0.00 4.00
336 415 1.258445 CCTACCTCCAACCTCAGCGT 61.258 60.000 0.00 0.00 0.00 5.07
360 439 2.158943 GGCTAGCCCTAAACCTGTGTAG 60.159 54.545 24.19 0.00 0.00 2.74
369 448 2.760799 TCGCCGGCTAGCCCTAAA 60.761 61.111 28.09 8.79 0.00 1.85
387 466 3.066342 TCATCTTACTCCTTTAGACCGCG 59.934 47.826 0.00 0.00 0.00 6.46
390 469 5.596845 CAGCTCATCTTACTCCTTTAGACC 58.403 45.833 0.00 0.00 0.00 3.85
391 470 5.047188 GCAGCTCATCTTACTCCTTTAGAC 58.953 45.833 0.00 0.00 0.00 2.59
411 490 2.947652 CCTCTTCTCTCTCTCTCAGCAG 59.052 54.545 0.00 0.00 0.00 4.24
412 491 2.575735 TCCTCTTCTCTCTCTCTCAGCA 59.424 50.000 0.00 0.00 0.00 4.41
417 496 2.106511 CCCGATCCTCTTCTCTCTCTCT 59.893 54.545 0.00 0.00 0.00 3.10
418 497 2.105821 TCCCGATCCTCTTCTCTCTCTC 59.894 54.545 0.00 0.00 0.00 3.20
419 498 2.106511 CTCCCGATCCTCTTCTCTCTCT 59.893 54.545 0.00 0.00 0.00 3.10
420 499 2.105821 TCTCCCGATCCTCTTCTCTCTC 59.894 54.545 0.00 0.00 0.00 3.20
421 500 2.131854 TCTCCCGATCCTCTTCTCTCT 58.868 52.381 0.00 0.00 0.00 3.10
423 502 3.028130 GTTTCTCCCGATCCTCTTCTCT 58.972 50.000 0.00 0.00 0.00 3.10
426 505 3.195825 TCTTGTTTCTCCCGATCCTCTTC 59.804 47.826 0.00 0.00 0.00 2.87
427 506 3.055747 GTCTTGTTTCTCCCGATCCTCTT 60.056 47.826 0.00 0.00 0.00 2.85
428 507 2.498078 GTCTTGTTTCTCCCGATCCTCT 59.502 50.000 0.00 0.00 0.00 3.69
431 510 1.203994 TCGTCTTGTTTCTCCCGATCC 59.796 52.381 0.00 0.00 0.00 3.36
432 511 2.531206 CTCGTCTTGTTTCTCCCGATC 58.469 52.381 0.00 0.00 0.00 3.69
433 512 1.204941 CCTCGTCTTGTTTCTCCCGAT 59.795 52.381 0.00 0.00 0.00 4.18
434 513 0.601558 CCTCGTCTTGTTTCTCCCGA 59.398 55.000 0.00 0.00 0.00 5.14
435 514 0.601558 TCCTCGTCTTGTTTCTCCCG 59.398 55.000 0.00 0.00 0.00 5.14
436 515 1.619332 ACTCCTCGTCTTGTTTCTCCC 59.381 52.381 0.00 0.00 0.00 4.30
437 516 2.610727 CCACTCCTCGTCTTGTTTCTCC 60.611 54.545 0.00 0.00 0.00 3.71
438 517 2.296471 TCCACTCCTCGTCTTGTTTCTC 59.704 50.000 0.00 0.00 0.00 2.87
444 523 1.827681 TCTCTCCACTCCTCGTCTTG 58.172 55.000 0.00 0.00 0.00 3.02
479 558 3.534357 TCTCTCCACTCCTTGTCTTCT 57.466 47.619 0.00 0.00 0.00 2.85
480 559 3.056179 CCTTCTCTCCACTCCTTGTCTTC 60.056 52.174 0.00 0.00 0.00 2.87
481 560 2.903135 CCTTCTCTCCACTCCTTGTCTT 59.097 50.000 0.00 0.00 0.00 3.01
482 561 2.534990 CCTTCTCTCCACTCCTTGTCT 58.465 52.381 0.00 0.00 0.00 3.41
483 562 1.552792 CCCTTCTCTCCACTCCTTGTC 59.447 57.143 0.00 0.00 0.00 3.18
484 563 1.650528 CCCTTCTCTCCACTCCTTGT 58.349 55.000 0.00 0.00 0.00 3.16
485 564 0.908198 CCCCTTCTCTCCACTCCTTG 59.092 60.000 0.00 0.00 0.00 3.61
486 565 0.252927 CCCCCTTCTCTCCACTCCTT 60.253 60.000 0.00 0.00 0.00 3.36
487 566 1.394151 CCCCCTTCTCTCCACTCCT 59.606 63.158 0.00 0.00 0.00 3.69
488 567 0.978667 GACCCCCTTCTCTCCACTCC 60.979 65.000 0.00 0.00 0.00 3.85
489 568 1.324005 CGACCCCCTTCTCTCCACTC 61.324 65.000 0.00 0.00 0.00 3.51
490 569 1.305381 CGACCCCCTTCTCTCCACT 60.305 63.158 0.00 0.00 0.00 4.00
491 570 2.359967 CCGACCCCCTTCTCTCCAC 61.360 68.421 0.00 0.00 0.00 4.02
492 571 2.038975 CCGACCCCCTTCTCTCCA 59.961 66.667 0.00 0.00 0.00 3.86
493 572 2.764547 CCCGACCCCCTTCTCTCC 60.765 72.222 0.00 0.00 0.00 3.71
494 573 1.758906 CTCCCGACCCCCTTCTCTC 60.759 68.421 0.00 0.00 0.00 3.20
495 574 2.364961 CTCCCGACCCCCTTCTCT 59.635 66.667 0.00 0.00 0.00 3.10
496 575 2.764547 CCTCCCGACCCCCTTCTC 60.765 72.222 0.00 0.00 0.00 2.87
497 576 2.824388 CTTCCTCCCGACCCCCTTCT 62.824 65.000 0.00 0.00 0.00 2.85
498 577 2.285144 TTCCTCCCGACCCCCTTC 60.285 66.667 0.00 0.00 0.00 3.46
499 578 2.285442 CTTCCTCCCGACCCCCTT 60.285 66.667 0.00 0.00 0.00 3.95
500 579 2.824388 CTTCTTCCTCCCGACCCCCT 62.824 65.000 0.00 0.00 0.00 4.79
501 580 2.285144 TTCTTCCTCCCGACCCCC 60.285 66.667 0.00 0.00 0.00 5.40
502 581 1.305887 TCTTCTTCCTCCCGACCCC 60.306 63.158 0.00 0.00 0.00 4.95
503 582 0.903454 TGTCTTCTTCCTCCCGACCC 60.903 60.000 0.00 0.00 0.00 4.46
504 583 0.974383 TTGTCTTCTTCCTCCCGACC 59.026 55.000 0.00 0.00 0.00 4.79
505 584 2.299297 TCTTTGTCTTCTTCCTCCCGAC 59.701 50.000 0.00 0.00 0.00 4.79
506 585 2.605257 TCTTTGTCTTCTTCCTCCCGA 58.395 47.619 0.00 0.00 0.00 5.14
507 586 3.402628 TTCTTTGTCTTCTTCCTCCCG 57.597 47.619 0.00 0.00 0.00 5.14
508 587 4.974399 TCTTTCTTTGTCTTCTTCCTCCC 58.026 43.478 0.00 0.00 0.00 4.30
509 588 6.944234 TTTCTTTCTTTGTCTTCTTCCTCC 57.056 37.500 0.00 0.00 0.00 4.30
555 634 0.537188 CTCACCCCGTGCACTATCTT 59.463 55.000 16.19 0.00 32.98 2.40
557 636 0.753262 ATCTCACCCCGTGCACTATC 59.247 55.000 16.19 0.00 32.98 2.08
558 637 0.465705 CATCTCACCCCGTGCACTAT 59.534 55.000 16.19 0.00 32.98 2.12
561 640 0.739813 GTACATCTCACCCCGTGCAC 60.740 60.000 6.82 6.82 32.98 4.57
562 641 1.594833 GTACATCTCACCCCGTGCA 59.405 57.895 0.00 0.00 32.98 4.57
563 642 1.518572 CGTACATCTCACCCCGTGC 60.519 63.158 0.00 0.00 32.98 5.34
564 643 0.744874 ATCGTACATCTCACCCCGTG 59.255 55.000 0.00 0.00 34.45 4.94
566 645 1.068472 GCTATCGTACATCTCACCCCG 60.068 57.143 0.00 0.00 0.00 5.73
604 697 4.840911 TGTAGCGTTACTCATCGTACATC 58.159 43.478 10.88 0.00 0.00 3.06
605 698 4.888038 TGTAGCGTTACTCATCGTACAT 57.112 40.909 10.88 0.00 0.00 2.29
606 699 4.551410 CGATGTAGCGTTACTCATCGTACA 60.551 45.833 18.07 0.00 43.60 2.90
607 700 3.898946 CGATGTAGCGTTACTCATCGTAC 59.101 47.826 18.07 0.00 43.60 3.67
608 701 3.803778 TCGATGTAGCGTTACTCATCGTA 59.196 43.478 22.39 12.49 45.87 3.43
609 702 2.610833 TCGATGTAGCGTTACTCATCGT 59.389 45.455 22.39 0.00 45.87 3.73
610 703 2.965414 GTCGATGTAGCGTTACTCATCG 59.035 50.000 19.43 19.43 46.41 3.84
611 704 2.965414 CGTCGATGTAGCGTTACTCATC 59.035 50.000 10.88 5.56 33.31 2.92
612 705 2.286831 CCGTCGATGTAGCGTTACTCAT 60.287 50.000 10.88 0.00 0.00 2.90
613 706 1.063027 CCGTCGATGTAGCGTTACTCA 59.937 52.381 10.88 0.00 0.00 3.41
614 707 1.328680 TCCGTCGATGTAGCGTTACTC 59.671 52.381 10.88 5.18 0.00 2.59
615 708 1.372582 TCCGTCGATGTAGCGTTACT 58.627 50.000 10.88 0.00 0.00 2.24
616 709 2.107178 CTTCCGTCGATGTAGCGTTAC 58.893 52.381 3.52 2.00 0.00 2.50
617 710 2.009051 TCTTCCGTCGATGTAGCGTTA 58.991 47.619 3.52 0.00 0.00 3.18
618 711 0.806868 TCTTCCGTCGATGTAGCGTT 59.193 50.000 3.52 0.00 0.00 4.84
619 712 1.022735 ATCTTCCGTCGATGTAGCGT 58.977 50.000 3.52 0.00 0.00 5.07
620 713 2.121116 AATCTTCCGTCGATGTAGCG 57.879 50.000 3.52 0.00 0.00 4.26
621 714 2.971915 CGTAATCTTCCGTCGATGTAGC 59.028 50.000 3.52 0.00 0.00 3.58
622 715 3.966844 CACGTAATCTTCCGTCGATGTAG 59.033 47.826 3.52 0.96 34.59 2.74
623 716 3.242837 CCACGTAATCTTCCGTCGATGTA 60.243 47.826 3.52 0.00 34.59 2.29
624 717 2.479049 CCACGTAATCTTCCGTCGATGT 60.479 50.000 3.52 0.00 34.59 3.06
625 718 2.117137 CCACGTAATCTTCCGTCGATG 58.883 52.381 0.00 0.00 34.59 3.84
626 719 1.066605 CCCACGTAATCTTCCGTCGAT 59.933 52.381 0.00 0.00 34.59 3.59
627 720 0.452987 CCCACGTAATCTTCCGTCGA 59.547 55.000 0.00 0.00 34.59 4.20
628 721 0.171903 ACCCACGTAATCTTCCGTCG 59.828 55.000 0.00 0.00 34.59 5.12
629 722 1.203052 TCACCCACGTAATCTTCCGTC 59.797 52.381 0.00 0.00 34.59 4.79
630 723 1.259609 TCACCCACGTAATCTTCCGT 58.740 50.000 0.00 0.00 37.90 4.69
631 724 2.596904 ATCACCCACGTAATCTTCCG 57.403 50.000 0.00 0.00 0.00 4.30
632 725 4.098960 TCAGTATCACCCACGTAATCTTCC 59.901 45.833 0.00 0.00 0.00 3.46
633 726 5.258456 TCAGTATCACCCACGTAATCTTC 57.742 43.478 0.00 0.00 0.00 2.87
634 727 5.871396 ATCAGTATCACCCACGTAATCTT 57.129 39.130 0.00 0.00 0.00 2.40
635 728 5.871396 AATCAGTATCACCCACGTAATCT 57.129 39.130 0.00 0.00 0.00 2.40
636 729 5.815740 ACAAATCAGTATCACCCACGTAATC 59.184 40.000 0.00 0.00 0.00 1.75
637 730 5.741011 ACAAATCAGTATCACCCACGTAAT 58.259 37.500 0.00 0.00 0.00 1.89
638 731 5.155278 ACAAATCAGTATCACCCACGTAA 57.845 39.130 0.00 0.00 0.00 3.18
639 732 4.221041 TGACAAATCAGTATCACCCACGTA 59.779 41.667 0.00 0.00 0.00 3.57
640 733 3.007506 TGACAAATCAGTATCACCCACGT 59.992 43.478 0.00 0.00 0.00 4.49
641 734 3.595173 TGACAAATCAGTATCACCCACG 58.405 45.455 0.00 0.00 0.00 4.94
642 735 5.003804 ACTTGACAAATCAGTATCACCCAC 58.996 41.667 0.00 0.00 35.83 4.61
643 736 5.241403 ACTTGACAAATCAGTATCACCCA 57.759 39.130 0.00 0.00 35.83 4.51
644 737 5.473504 ACAACTTGACAAATCAGTATCACCC 59.526 40.000 0.00 0.00 35.83 4.61
645 738 6.204688 TCACAACTTGACAAATCAGTATCACC 59.795 38.462 0.00 0.00 35.83 4.02
646 739 7.189693 TCACAACTTGACAAATCAGTATCAC 57.810 36.000 0.00 0.00 35.83 3.06
647 740 7.984422 ATCACAACTTGACAAATCAGTATCA 57.016 32.000 0.00 0.00 36.92 2.15
648 741 8.506437 TCAATCACAACTTGACAAATCAGTATC 58.494 33.333 0.00 0.00 36.92 2.24
649 742 8.394971 TCAATCACAACTTGACAAATCAGTAT 57.605 30.769 0.00 0.00 36.92 2.12
650 743 7.800155 TCAATCACAACTTGACAAATCAGTA 57.200 32.000 0.00 0.00 36.92 2.74
651 744 6.698008 TCAATCACAACTTGACAAATCAGT 57.302 33.333 0.00 0.00 36.92 3.41
652 745 8.583810 AATTCAATCACAACTTGACAAATCAG 57.416 30.769 0.00 0.00 36.92 2.90
656 749 9.299963 CACTTAATTCAATCACAACTTGACAAA 57.700 29.630 0.00 0.00 36.92 2.83
657 750 7.920151 CCACTTAATTCAATCACAACTTGACAA 59.080 33.333 0.00 0.00 36.92 3.18
658 751 7.424803 CCACTTAATTCAATCACAACTTGACA 58.575 34.615 0.00 0.00 36.92 3.58
659 752 6.863126 CCCACTTAATTCAATCACAACTTGAC 59.137 38.462 0.00 0.00 36.92 3.18
660 753 6.015519 CCCCACTTAATTCAATCACAACTTGA 60.016 38.462 0.00 0.00 39.11 3.02
661 754 6.015519 TCCCCACTTAATTCAATCACAACTTG 60.016 38.462 0.00 0.00 0.00 3.16
662 755 6.074648 TCCCCACTTAATTCAATCACAACTT 58.925 36.000 0.00 0.00 0.00 2.66
663 756 5.640147 TCCCCACTTAATTCAATCACAACT 58.360 37.500 0.00 0.00 0.00 3.16
664 757 5.105756 CCTCCCCACTTAATTCAATCACAAC 60.106 44.000 0.00 0.00 0.00 3.32
665 758 5.016173 CCTCCCCACTTAATTCAATCACAA 58.984 41.667 0.00 0.00 0.00 3.33
666 759 4.569653 CCCTCCCCACTTAATTCAATCACA 60.570 45.833 0.00 0.00 0.00 3.58
667 760 3.954258 CCCTCCCCACTTAATTCAATCAC 59.046 47.826 0.00 0.00 0.00 3.06
668 761 3.855599 TCCCTCCCCACTTAATTCAATCA 59.144 43.478 0.00 0.00 0.00 2.57
669 762 4.207955 GTCCCTCCCCACTTAATTCAATC 58.792 47.826 0.00 0.00 0.00 2.67
670 763 3.371595 CGTCCCTCCCCACTTAATTCAAT 60.372 47.826 0.00 0.00 0.00 2.57
671 764 2.026636 CGTCCCTCCCCACTTAATTCAA 60.027 50.000 0.00 0.00 0.00 2.69
672 765 1.557832 CGTCCCTCCCCACTTAATTCA 59.442 52.381 0.00 0.00 0.00 2.57
673 766 1.134189 CCGTCCCTCCCCACTTAATTC 60.134 57.143 0.00 0.00 0.00 2.17
674 767 0.916809 CCGTCCCTCCCCACTTAATT 59.083 55.000 0.00 0.00 0.00 1.40
675 768 0.986550 CCCGTCCCTCCCCACTTAAT 60.987 60.000 0.00 0.00 0.00 1.40
676 769 1.614226 CCCGTCCCTCCCCACTTAA 60.614 63.158 0.00 0.00 0.00 1.85
677 770 2.039951 CCCGTCCCTCCCCACTTA 59.960 66.667 0.00 0.00 0.00 2.24
693 786 2.746947 ATTTTCACCTGGGTGGGGCC 62.747 60.000 18.26 0.00 45.43 5.80
694 787 1.229177 ATTTTCACCTGGGTGGGGC 60.229 57.895 18.26 0.00 45.43 5.80
695 788 0.114168 TGATTTTCACCTGGGTGGGG 59.886 55.000 18.26 0.00 45.43 4.96
696 789 1.549203 CTGATTTTCACCTGGGTGGG 58.451 55.000 18.26 0.00 45.43 4.61
697 790 1.075374 TCCTGATTTTCACCTGGGTGG 59.925 52.381 18.26 1.60 45.43 4.61
698 791 2.440409 CTCCTGATTTTCACCTGGGTG 58.560 52.381 13.12 13.12 46.64 4.61
699 792 1.355720 CCTCCTGATTTTCACCTGGGT 59.644 52.381 0.00 0.00 0.00 4.51
700 793 1.341383 CCCTCCTGATTTTCACCTGGG 60.341 57.143 0.00 0.00 0.00 4.45
701 794 1.341383 CCCCTCCTGATTTTCACCTGG 60.341 57.143 0.00 0.00 0.00 4.45
702 795 1.957113 GCCCCTCCTGATTTTCACCTG 60.957 57.143 0.00 0.00 0.00 4.00
703 796 0.332972 GCCCCTCCTGATTTTCACCT 59.667 55.000 0.00 0.00 0.00 4.00
704 797 1.032114 CGCCCCTCCTGATTTTCACC 61.032 60.000 0.00 0.00 0.00 4.02
705 798 1.032114 CCGCCCCTCCTGATTTTCAC 61.032 60.000 0.00 0.00 0.00 3.18
706 799 1.204786 TCCGCCCCTCCTGATTTTCA 61.205 55.000 0.00 0.00 0.00 2.69
707 800 0.464554 CTCCGCCCCTCCTGATTTTC 60.465 60.000 0.00 0.00 0.00 2.29
708 801 0.914417 TCTCCGCCCCTCCTGATTTT 60.914 55.000 0.00 0.00 0.00 1.82
709 802 1.306997 TCTCCGCCCCTCCTGATTT 60.307 57.895 0.00 0.00 0.00 2.17
710 803 1.764054 CTCTCCGCCCCTCCTGATT 60.764 63.158 0.00 0.00 0.00 2.57
711 804 2.029892 ATCTCTCCGCCCCTCCTGAT 62.030 60.000 0.00 0.00 0.00 2.90
712 805 2.243774 AATCTCTCCGCCCCTCCTGA 62.244 60.000 0.00 0.00 0.00 3.86
713 806 0.470080 TAATCTCTCCGCCCCTCCTG 60.470 60.000 0.00 0.00 0.00 3.86
714 807 0.489567 ATAATCTCTCCGCCCCTCCT 59.510 55.000 0.00 0.00 0.00 3.69
715 808 1.353091 AATAATCTCTCCGCCCCTCC 58.647 55.000 0.00 0.00 0.00 4.30
716 809 2.498078 CCTAATAATCTCTCCGCCCCTC 59.502 54.545 0.00 0.00 0.00 4.30
717 810 2.111972 TCCTAATAATCTCTCCGCCCCT 59.888 50.000 0.00 0.00 0.00 4.79
718 811 2.537143 TCCTAATAATCTCTCCGCCCC 58.463 52.381 0.00 0.00 0.00 5.80
719 812 4.563786 CCTTTCCTAATAATCTCTCCGCCC 60.564 50.000 0.00 0.00 0.00 6.13
720 813 4.563786 CCCTTTCCTAATAATCTCTCCGCC 60.564 50.000 0.00 0.00 0.00 6.13
721 814 4.570930 CCCTTTCCTAATAATCTCTCCGC 58.429 47.826 0.00 0.00 0.00 5.54
722 815 4.563786 GGCCCTTTCCTAATAATCTCTCCG 60.564 50.000 0.00 0.00 0.00 4.63
723 816 4.599676 AGGCCCTTTCCTAATAATCTCTCC 59.400 45.833 0.00 0.00 33.95 3.71
724 817 5.072464 ACAGGCCCTTTCCTAATAATCTCTC 59.928 44.000 0.00 0.00 33.95 3.20
725 818 4.978388 ACAGGCCCTTTCCTAATAATCTCT 59.022 41.667 0.00 0.00 33.95 3.10
726 819 5.311844 ACAGGCCCTTTCCTAATAATCTC 57.688 43.478 0.00 0.00 33.95 2.75
727 820 6.841781 TTACAGGCCCTTTCCTAATAATCT 57.158 37.500 0.00 0.00 33.95 2.40
728 821 7.560262 AGTTTTACAGGCCCTTTCCTAATAATC 59.440 37.037 0.00 0.00 33.95 1.75
729 822 7.419203 AGTTTTACAGGCCCTTTCCTAATAAT 58.581 34.615 0.00 0.00 33.95 1.28
730 823 6.796648 AGTTTTACAGGCCCTTTCCTAATAA 58.203 36.000 0.00 0.00 33.95 1.40
731 824 6.397217 AGTTTTACAGGCCCTTTCCTAATA 57.603 37.500 0.00 0.00 33.95 0.98
732 825 5.262009 GAGTTTTACAGGCCCTTTCCTAAT 58.738 41.667 0.00 0.00 33.95 1.73
733 826 4.507869 GGAGTTTTACAGGCCCTTTCCTAA 60.508 45.833 0.00 0.00 33.95 2.69
734 827 3.009805 GGAGTTTTACAGGCCCTTTCCTA 59.990 47.826 0.00 0.00 33.95 2.94
735 828 2.225041 GGAGTTTTACAGGCCCTTTCCT 60.225 50.000 0.00 0.00 36.78 3.36
736 829 2.168496 GGAGTTTTACAGGCCCTTTCC 58.832 52.381 0.00 0.00 0.00 3.13
737 830 2.168496 GGGAGTTTTACAGGCCCTTTC 58.832 52.381 0.00 0.00 35.86 2.62
738 831 1.546998 CGGGAGTTTTACAGGCCCTTT 60.547 52.381 0.00 0.00 36.62 3.11
739 832 0.037734 CGGGAGTTTTACAGGCCCTT 59.962 55.000 0.00 0.00 36.62 3.95
740 833 1.131928 ACGGGAGTTTTACAGGCCCT 61.132 55.000 0.00 0.00 43.33 5.19
741 834 0.614812 TACGGGAGTTTTACAGGCCC 59.385 55.000 0.00 0.00 43.33 5.80
742 835 2.027837 TCTTACGGGAGTTTTACAGGCC 60.028 50.000 0.00 0.00 43.33 5.19
743 836 3.259902 CTCTTACGGGAGTTTTACAGGC 58.740 50.000 0.00 0.00 43.33 4.85
744 837 3.858247 CCTCTTACGGGAGTTTTACAGG 58.142 50.000 0.00 0.00 43.33 4.00
745 838 3.259902 GCCTCTTACGGGAGTTTTACAG 58.740 50.000 0.00 0.00 43.33 2.74
746 839 2.027837 GGCCTCTTACGGGAGTTTTACA 60.028 50.000 0.00 0.00 43.33 2.41
747 840 2.625737 GGCCTCTTACGGGAGTTTTAC 58.374 52.381 0.00 0.00 43.33 2.01
748 841 1.556451 GGGCCTCTTACGGGAGTTTTA 59.444 52.381 0.84 0.00 43.33 1.52
749 842 0.327259 GGGCCTCTTACGGGAGTTTT 59.673 55.000 0.84 0.00 43.33 2.43
750 843 1.896122 CGGGCCTCTTACGGGAGTTT 61.896 60.000 0.84 0.00 43.33 2.66
751 844 2.356780 CGGGCCTCTTACGGGAGTT 61.357 63.158 0.84 0.00 43.33 3.01
753 846 1.454479 TACGGGCCTCTTACGGGAG 60.454 63.158 0.84 0.00 0.00 4.30
754 847 1.754234 GTACGGGCCTCTTACGGGA 60.754 63.158 0.84 0.00 0.00 5.14
755 848 2.810403 GTACGGGCCTCTTACGGG 59.190 66.667 0.84 0.00 0.00 5.28
756 849 1.937546 AACGTACGGGCCTCTTACGG 61.938 60.000 25.04 13.51 42.28 4.02
757 850 0.109132 AAACGTACGGGCCTCTTACG 60.109 55.000 21.06 21.91 43.34 3.18
758 851 2.802256 CTAAACGTACGGGCCTCTTAC 58.198 52.381 21.06 0.53 0.00 2.34
759 852 1.134946 GCTAAACGTACGGGCCTCTTA 59.865 52.381 21.06 6.20 0.00 2.10
760 853 0.108472 GCTAAACGTACGGGCCTCTT 60.108 55.000 21.06 0.00 0.00 2.85
761 854 1.252904 TGCTAAACGTACGGGCCTCT 61.253 55.000 21.06 0.00 0.00 3.69
762 855 0.179092 ATGCTAAACGTACGGGCCTC 60.179 55.000 21.06 6.20 0.00 4.70
763 856 0.251073 AATGCTAAACGTACGGGCCT 59.749 50.000 21.06 8.25 0.00 5.19
764 857 1.089112 AAATGCTAAACGTACGGGCC 58.911 50.000 21.06 0.00 0.00 5.80
765 858 2.905959 AAAATGCTAAACGTACGGGC 57.094 45.000 21.06 17.10 0.00 6.13
766 859 4.407496 TCAAAAATGCTAAACGTACGGG 57.593 40.909 21.06 7.74 0.00 5.28
767 860 5.387279 ACATCAAAAATGCTAAACGTACGG 58.613 37.500 21.06 2.24 0.00 4.02
768 861 6.189616 CGTACATCAAAAATGCTAAACGTACG 59.810 38.462 15.01 15.01 41.37 3.67
769 862 7.213151 GTCGTACATCAAAAATGCTAAACGTAC 59.787 37.037 0.00 0.00 0.00 3.67
770 863 7.095732 TGTCGTACATCAAAAATGCTAAACGTA 60.096 33.333 0.00 0.00 0.00 3.57
771 864 6.075280 GTCGTACATCAAAAATGCTAAACGT 58.925 36.000 0.00 0.00 0.00 3.99
772 865 6.074642 TGTCGTACATCAAAAATGCTAAACG 58.925 36.000 0.00 0.00 0.00 3.60
773 866 6.523201 CCTGTCGTACATCAAAAATGCTAAAC 59.477 38.462 0.00 0.00 0.00 2.01
774 867 6.607689 CCTGTCGTACATCAAAAATGCTAAA 58.392 36.000 0.00 0.00 0.00 1.85
775 868 5.391523 GCCTGTCGTACATCAAAAATGCTAA 60.392 40.000 0.00 0.00 0.00 3.09
776 869 4.094294 GCCTGTCGTACATCAAAAATGCTA 59.906 41.667 0.00 0.00 0.00 3.49
777 870 3.119849 GCCTGTCGTACATCAAAAATGCT 60.120 43.478 0.00 0.00 0.00 3.79
778 871 3.119849 AGCCTGTCGTACATCAAAAATGC 60.120 43.478 0.00 0.00 0.00 3.56
779 872 4.685169 AGCCTGTCGTACATCAAAAATG 57.315 40.909 0.00 0.00 0.00 2.32
780 873 4.759693 TCAAGCCTGTCGTACATCAAAAAT 59.240 37.500 0.00 0.00 0.00 1.82
781 874 4.130857 TCAAGCCTGTCGTACATCAAAAA 58.869 39.130 0.00 0.00 0.00 1.94
782 875 3.734463 TCAAGCCTGTCGTACATCAAAA 58.266 40.909 0.00 0.00 0.00 2.44
783 876 3.394674 TCAAGCCTGTCGTACATCAAA 57.605 42.857 0.00 0.00 0.00 2.69
784 877 3.521560 GATCAAGCCTGTCGTACATCAA 58.478 45.455 0.00 0.00 0.00 2.57
785 878 2.479560 CGATCAAGCCTGTCGTACATCA 60.480 50.000 0.00 0.00 0.00 3.07
839 957 0.105039 CGTCCCCACAAGAGATAGGC 59.895 60.000 0.00 0.00 0.00 3.93
840 958 1.409427 GTCGTCCCCACAAGAGATAGG 59.591 57.143 0.00 0.00 0.00 2.57
955 1074 3.443925 CGACGAGCTGCTCTCCCA 61.444 66.667 25.59 0.00 38.62 4.37
1629 1757 5.012328 ACTTGTTATCCTTGTCGATCTCC 57.988 43.478 0.00 0.00 0.00 3.71
1696 1824 1.767289 AGTGTCGACAACAAGCGTAG 58.233 50.000 21.95 0.00 40.31 3.51
1768 1896 2.240667 ACCTATTGCAGAGACCTTGCAT 59.759 45.455 0.32 0.00 38.43 3.96
1883 2011 3.131223 TCCATCTGCTTTAGGAGAACGAG 59.869 47.826 5.04 0.00 45.49 4.18
1911 2040 3.379372 AGGTGGCTCGATTGATCAAAATG 59.621 43.478 13.09 5.46 0.00 2.32
2067 2198 4.597507 TGTTCTGGACTAGGAATTTCCACT 59.402 41.667 17.57 0.41 39.61 4.00
2080 2213 2.027469 GGACCCGTTAATGTTCTGGACT 60.027 50.000 0.00 0.00 0.00 3.85
2176 2313 9.183368 TCTATCACCAATTTATGCACATAACAA 57.817 29.630 2.59 0.00 33.40 2.83
2192 2329 3.916359 TGCCCGTTTATCTATCACCAA 57.084 42.857 0.00 0.00 0.00 3.67
2201 2338 3.547746 TCCTTTGGTATGCCCGTTTATC 58.452 45.455 0.00 0.00 35.15 1.75
2207 2344 1.133792 AGGAATCCTTTGGTATGCCCG 60.134 52.381 0.00 0.00 35.15 6.13
2225 2362 1.955778 TGCAAACTGATCAACCACAGG 59.044 47.619 0.00 0.00 38.30 4.00
2236 2373 1.985473 ACTGGAATGCTGCAAACTGA 58.015 45.000 6.36 0.00 0.00 3.41
2301 2438 2.762360 CGGAGCTCGTATTTGCCAA 58.238 52.632 7.83 0.00 0.00 4.52
2376 2561 8.585471 ATCACTGATTTGTTCTTACATTCCAT 57.415 30.769 0.00 0.00 33.44 3.41
2444 2629 1.002033 GTTGTGAAGTGCTTGCTCCAG 60.002 52.381 0.00 0.00 0.00 3.86
2477 2662 8.833231 ATCTTCTTCTTGTCGTTGAGAATTTA 57.167 30.769 0.00 0.00 31.97 1.40
2478 2663 7.442364 TGATCTTCTTCTTGTCGTTGAGAATTT 59.558 33.333 0.00 0.00 31.97 1.82
2479 2664 6.931281 TGATCTTCTTCTTGTCGTTGAGAATT 59.069 34.615 0.00 0.00 31.97 2.17
2480 2665 6.459066 TGATCTTCTTCTTGTCGTTGAGAAT 58.541 36.000 0.00 0.00 31.97 2.40
2482 2667 5.453567 TGATCTTCTTCTTGTCGTTGAGA 57.546 39.130 0.00 0.00 0.00 3.27
2483 2668 6.358762 GTTTGATCTTCTTCTTGTCGTTGAG 58.641 40.000 0.00 0.00 0.00 3.02
2484 2669 5.051039 CGTTTGATCTTCTTCTTGTCGTTGA 60.051 40.000 0.00 0.00 0.00 3.18
2485 2670 5.133264 CGTTTGATCTTCTTCTTGTCGTTG 58.867 41.667 0.00 0.00 0.00 4.10
2488 2673 3.987868 TCCGTTTGATCTTCTTCTTGTCG 59.012 43.478 0.00 0.00 0.00 4.35
2489 2674 5.696724 TCTTCCGTTTGATCTTCTTCTTGTC 59.303 40.000 0.00 0.00 0.00 3.18
2490 2675 5.611374 TCTTCCGTTTGATCTTCTTCTTGT 58.389 37.500 0.00 0.00 0.00 3.16
2491 2676 5.698545 ACTCTTCCGTTTGATCTTCTTCTTG 59.301 40.000 0.00 0.00 0.00 3.02
2492 2677 5.859495 ACTCTTCCGTTTGATCTTCTTCTT 58.141 37.500 0.00 0.00 0.00 2.52
2493 2678 5.476091 ACTCTTCCGTTTGATCTTCTTCT 57.524 39.130 0.00 0.00 0.00 2.85
2494 2679 6.391537 ACTACTCTTCCGTTTGATCTTCTTC 58.608 40.000 0.00 0.00 0.00 2.87
2497 2682 5.738225 CGTACTACTCTTCCGTTTGATCTTC 59.262 44.000 0.00 0.00 0.00 2.87
2541 2726 9.396022 ACTTGATTCCACGATATGTTTAAGATT 57.604 29.630 0.00 0.00 0.00 2.40
2544 2729 7.910162 CCAACTTGATTCCACGATATGTTTAAG 59.090 37.037 0.00 0.00 0.00 1.85
2549 2734 4.843728 ACCAACTTGATTCCACGATATGT 58.156 39.130 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.