>input_sequence_72693
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------------------------------------------------------------------------------AT
GGCCGCCTTGCTCCACGTAGCGGCTCTCCAGCCCG---------CCCCTTACCCTCATCACCAACGGATGCACAGCCTAT
CCACCACTTCCATCCTTTCCCCGCCTCACGCCGCACCGTCCAAGCGACGACGAGCCACAGCCCGGCGGCCACACGCAGCC
GGCAACGGCAGCGGCGTCGGCACACCAGCCGCGGACAGCACAAGCAACAAGAAGCCGAGCCGCAAGGAGAAGCAGCGGCA
GCAGCAGCGGGTGCGCGAGCGGGAGGAGCAGCAGCAGCTGCTGCTCCTGAAGGAGTCGCTCGTGGAGCCCGCCCGCGAGG
AGGAGGACGGCGGCGGCCGCGGCGACGACGAGCTGCCGCAGGTGGTGTTCGACCGCATCCTCCGGCGGATCCTGTTCACG
GTGGGCGTCCCGATGGCGTCGGGCGTGGCGCTCCTCAACGTGTACGACGCGCTCAAGCGCGGGGGCGGGGCCGAGGTGCC
GTCGTGGGTGCAGCTGCTCACCATCCTCCTCTCCTTCGGCACGTCGGCGCTCGGCATCGCCTACGGGACGCTGTCGGCGA
GCTGGGACCCGGAGAAGGAAGGCTCGCTGCTCGGCGTCGACGAGGCCCGGACCAACTGGCCGGAGCTGTGGAAGGAGGAG
ATCGACAAGGATAACAAGTAG-----------------------------------------------------------
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>chr1D_1_TraesCS1D01G191700
CTTTCGCATGAACGGTTGTAGTTTTTTTCAGTTGCACATGTGATCCATCGAAACTTTTTTAAACTACGGTTGAAGCTTTC
ATATGGACAATTGTAGCTTTTTCCAGTGCACAGTGTCCGGTTGAAGCTTTATATACCGT-GGGTTGAAGCTTTCGAATCA
AACGGTTGTAGCTTTTTGGGTCCTCGGTTGCAGGATCCATGGAGAAGCAAAGCTTTTAGGTTCATTTTGGGAGGAGATGG
TTGTAGCAGTGGGGGAGGAGGCCGCGCCGCCATGGTTATGGCATTTCCAGT-----------------------------
------------------------------------------------GGCGAAAGGGACCGGTAGCCATGGGCAGTGGA
AGAAGTGGGCGTGGACGCTGAGGTTGGAGGTAGGGGACCTACACAGGTTTAGGGCTAGCCGGCGACGCGGTCTAAAGGAG
TAAGATGAGCTGCTGAGAGAGAGAGAAGAGGATCGGGAGAAACAAGACGAGGAGTGGAGAGAAGGGGGTCGGGAGGAAGA
AGACAAGGAGTGGAGAGAAGGGGGTCGGGAGGAAGAAGACAAAGAAAGAAAAAAGATAAGCCCCCGGAAAAAAAAGATAG
TGCAC--------------GGGGTGAGATGTACGATAGCCTTTCTTTTTTTAACTAGATGTACGATGAGTAACGCTACAT
CGACGGAAGATTACGTGGGTGATACTGATTTGTCAAGTTGTGATTGAATTAAGTGGGGAGGGACGGGCCCCACCCAGGTG
AAAATCAGGAGGGGCGGAGAGATTATTAGGAAAGGGCCTGTAAAACTCCCGTAAGAGGCCCGTACGTTTAGCATTTTTGA
TGTACGACAGGCTTGATCGCCAGGC-------------------------AACCGGTCGGCCGGGCACAAACGTTTGC-C
TATCTCTTGTGGGGACGACACACGTGGCACCCAACCCAGGAACGCATCGAGAATGCAGTTACGCGCCACCACTGACCACT
GCCCATGGCGATAAGGCTATTACCACGAGGAAGTGGGAGAGCAGCTCGTCGTCTCCTGCCAATCCACCGGCGGCGCGCAT
GGCCGCCTTGCTCCACGTAGCGGCTCTCCAGCCCG---------CCCCTTACCCTCATCACCAACGGATGCACAGCCTAT
CCACCACTTCCATCCTTTCCCCGCCTCACGCCGCACCGTCCAAGCGACGACGAGCCACAGCCCGGCGGCCACACGCAGCC
GGCAACGGCAGCGGCGTCGGCACACCAGCCGCGGACAGCACAAGCAACAAGAAGCCGAGCCGCAAGGAGAAGCAGCGGCA
GCAGCAGCGGGTGCGCGAGCGGGAGGAGCAGCAGCAGCTGCTGCTCCTGAAGGAGTCGCTCGTGGAGCCCGCCCGCGAGG
AGGAGGACGGCGGCGGCCGCGGCGACGACGAGCTGCCGCAGGTGGTGTTCGACCGCATCCTCCGGCGGATCCTGTTCACG
GTGGGCGTCCCGATGGCGTCGGGCGTGGCGCTCCTCAACGTGTACGACGCGCTCAAGCGCGGGGGCGGGGCCGAGGTGCC
GTCGTGGGTGCAGCTGCTCACCATCCTCCTCTCCTTCGGCACGTCGGCGCTCGGCATCGCCTACGGGACGCTGTCGGCGA
GCTGGGACCCGGAGAAGGAAGGCTCGCTGCTCGGCGTCGACGAGGCCCGGACCAACTGGCCGGAGCTGTGGAAGGAGGAG
ATCGACAAGGATAACAAGTAGTAACTGTAAATAGACTAGATATTTTCTCCACTGGAAATAGCACTACGCTTGTTGTCGAC
ACTTGATACTCGTACAGGCTACAGCAGTGAAACTATGAAACAATTCGCAGTGGCTATGCAAGGTCTCTGCAATAGGTAGA
ATGGCCAAAACTGAACACTTGGCAGGAAAAAAGAGAAAACTGAGTGAACCCCCAGGCCAGCCAGAATACAACACTGATGA
GTCAGTTGCTCTC-GTTCTCCTAAAGCAGATGGATGGGTCATTTTGATCAATCGAGCCACCTGGTGACGCCATCTTCTTC
ACTCACCGCTGCGAGGATCTCGATATAGACCTCCAATACAGCCTGCAGACAATTTTAACTACCATCAGGAAACAAGATAC
TACCAACAGAACTGTT--TTTTCGAGTTAGTCATGGCAGTGG--AAATTCCTAGTCCAGAACATTAACGGGTCCTGTTTT
GTGATGAAAATAAAGATTCGCTATTACCATTGG--CGGGGACAGATGTGCATCTT--AACTCTTAAATATTGTTGTTATG
TGCATAAATTGGTGATAGATAAACGGGCATACCAAAGGATTCCTGTGGTTGATCAGTTTGCAGCATTCCAGTAAAGACCC
TTCCAGCGTCCAGCTCTCCCAAACATCGAAAGCATGATTGGCAAATACGAGCTCCGCCTTCTTATTAACCTGAAAACAAG
TTTAAAAGGGAGTTAAATAT------------------------------------------------TATACAGGGATC
ATGGAATGTAAGAACAAATCAGTGATTCTATTCATAAACTTCTCGAAGCTCCTGCAATGGAATCGAGCCTGGAGCAAGCA
CTTCACAACTATTCAAAGTAATAAATTCTCAACGACAAGAAGAAGATCAAACGGAAGAGTAGTACGAGATACACTAGTAG
TACTTAATCTTAAACATATCGTGGAATCAAGTTGGTAATTTTCAACACGGAACAAAAAAATGGGATAATGTGTAAAGCAC
AAAAAAT----TGACCATAGATGTCATTGCATCTAAAAATCA
>chr1A_1
CTTTCACATGAACGGGTGTAGCTTTTTTCAGTTGCACAGGTGATCCATCGAAACTTTTTTAAATTACGGTTGAAGCTTTC
ATATGGACAATTGTAGCTTTTATTAGTGCACGGTGTCCGGTTGAAACTTTATATACCCGCGGGTTGAAGCTTTCGAATCA
AACGGTTGCAGCTTTTTGGGTCCTCGGTTGCAGCATCAATGGAGAAGCAAAGCTTTTAGGTTCATTTTGGGAGGAGATGG
TTGTAGCAGTCA------------CGCCGCCGTTGTTATAGCATTTTCCGTGGACGGTTCCAACATAGGAAACTGTGAGC
AACTCGTGATGGCATATTCATGGCGGCTTTCCAACTCTAGCTCGCCGGGGCGAAAGGGACCTGTAGCCATGGGCAGTGGA
AGAAGTGGGCGTGGGCGCTGAGGTTGGAGGCAGGGGACATACACAGGATTAGGGCTAGCCGGCGATGCAATCTAAAGGAG
TAAGATGAGGAGCTGCTGAGGGGATCCGA--------AGAAAGAAGACGAGGAGTGGAGAGAAGGGGGTCGGGAGGA---
---------------------------------AGAAGACAGAGAAAGAAAAAAGATAAGCGCCCGAAAAAAATAAGTAT
AAGATGGACAGATGGTGCAGGGGTGAGATGTACGACAGCCTCTCTTTTTTTAACTA------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------GA
TGTACGACAGGCTTGATCGTCAGGCTCGCGTGCGACCGGCCGAAGTTTCTAACCAGACGGCCGGGCACAAACGTTTTGAC
TATCTTTTGTGGGGCCGACACACGTGGCACCCAACCCAGGAAGGCATCGAGAATGCAGTTACGCGCCACCACTGACCACT
GCCCATGGCGATAAGGCTATTACCACGAGGAAGCGGGAGAGCAGCTCGCCGCCTCCTACGAATCCACCGGCGGCGCGCAT
GGCCGCCTTGCTCCACGTAATGGCTCTCCAGCCCG---------CCCCTTACCCTCATCACCAACAGATGCACAGCCTAT
CCTCCACTTCCATCCTTTCACCACCTCGCGCGACGCCGTCCAGGCAACGACGAGCCCCGGCCCGGCGGCTACACGCGGCC
GGCAACGGCAGCGGCGTCGGCACGCCAGCCGCGGACAGCACAGGAAACAAGAAGACGAGCCGCAAGGAGAAGCAGCGGCA
GCAGCAGCGGGTGCGGGAGCGGGAGGAGCAGCAGCAGCTGCTGCTCCTGAAGGAGTCGCTCGTGGAGCCCGCCCGC---G
AGGAGGACGGCGGCGGCCGCGGCGACGACGAGCTGCCGCAGGTGGTGTTCGACCGCATCCTCCGGCGGATCCTGTTCACG
GTGGGCGTCCCGATGGCGTCGGGCGTGGCGCTCCTCAACGTGTACGACGCGCTCAAGCGCGGCGGCGGGGCGGAGGTGCC
GTCGTGGGTGCAGCTGCTCACCATCCTCCTCTCCTTCGGCACGTCGGCGCTCGGCATCGCCTACGGGACGCTGTCGGCGA
GCTGGGACCCGGAGAAGGAAGGCTCGCTGCTCGGCGTCGACGAGGCCCGGACCAACTGGCCGGAGCTGTGGAAGGAAGAG
ATCGACAAGGATAACAAGTAGTAACTGTAAATAGACTAGATATTTTCTCCCCTGGAAATAGCAGTACGCTTGTTGTCGAC
ACTTGATACTCGTACAGGCTACAACAGTGAAACTATGGAACAATTCGCAGTGGCTTTGCAAGGTCTCTGCAATAGGTAGA
ATGGCCAAAACTTAACACTTGGCAGGAAAATAAAGAAAACTGAGTGAACCCCCAGGCCAGCCAGAATACAACACTGATGA
GTCAGTTGCTTTG-GTTCTCCTAAAGCAGATGGATGGGTTATTTTGATCAATCGAGCCACCTGGTGACGCCATCTTCTTC
GCTCACCGCTGCGAGGATCTCGATATAGACCTCCAATGCAGCCTACGCACAATTTAAACCACCATCAGGAAACAAAATAT
TACCAACAGAACTGTT--TTTTTGAGTTAGTCATGGCGGTGG--AAATTCCCGGTCCAGAACATTAACTGGTCCTGTTTT
GCAATGAAAATGAAGATTGGCTATTGCCATTGGGACGAGGACGGATGTGCATCTTATAACTCTTAAATGTTGCTGTTATG
TGCATAAAATGGTGATACACAAATGGGCATACCAAAGGATTTCTGTGGTTGACCAGTTTGCAGCACTCCAGTAAAGACCC
TTCCAGCGTCCAGCTCTCCCAAACATCAAAAGCATGACTGGCAAATACGAGCTCCGCCTTCTTATTAACCTGAAAACAAG
TTTAAAAGCGAGTTAAATATAGTAAATCGGCAATCTACATAAAGCATTTCACTTTCAATGCTGAAAATTATACAGGGATC
GTGGAATGTAAGAACAAATCAGTGATTCTATTCATAAACTTCTTAAACCTCCTGCAATGGAATCGAGCATGGAGCGAGCA
CTTAACAACTATTCAAAGTAAATTCTCAAAAC-------AAAAAGGTCAAACGGAAGAGTAGTACAAGATACACTAGTAC
TTG----TTTTAAGCATACCGTGGAATCAAGTTGGTAATTTTCAACATGGAACA-AAAAATAGGACAATGTGTAAAGCAT
AAAAAATGGTGTGACCATAGATGTCATTGCATCTAAAAAT--
>chr1B_843
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TATTTCTTCTGGGGCCGGCCCACGTGCCACCCAACCCAGGAACGCATCGAGAATGCAGTTACGTGCCACCACTGACCACT
GCCCATGGCGATAAGGTTATTGCCACGAGAG---GGGAGAGCAGCTCGTCGTCTCCTG-CAATCCACCGGCGGCGCGCAT
GGCCGCCTTGCTCCACGTAGCGGCTCTCCAGCCCCCTCACCCCACCCCAAAAACCCATCATCCATGGACGCACAGCCGGG
CCACCACGTCCATCCTCTCGGCACCTGACGCAGCCCCGTCGAAGCGACGACGAGCCCCAGCTCGGCGGCTACACGCGGCC
GGCAACGGCAGCGGCGTCGGCACGCCAGCCACGGACAGCACAAGCAACAAGAAGCCGAGCCGCAAGGAGAAGCAGCGGCA
GCAGCAGCGGGTGCGGGAGCGGGAGGAGCAGCAGCAGCTGCTGCTCCTGAAGGAGTCGCTCGTGGAGCCCGCCCGC---G
AGGAGGACGGCGGCGGCCGCGGCGACGACGAGCTGCCGCAGGTGGTGTTCGACCGCATCCTCCGGCGGATCCTGTTCACG
GTGGGCGTCCCGATGGCGTCGGGCGTGGCGCTCCTCAACGTGTACGACGCGCTCAAGCGCGGGGGCGGCGCGGAGGTGCC
GTCGTGGGTGCAGCTGCTCACCATCCTCCTCTCCTTCGGCACGTCGGCGCTCGGCATCGCCTACGGGACGCTGTCGGCGA
GCTGGGACCCGGAGAAAGAAGGCTCGCTGCTCGGCATCGACGAGGCCCGGACCAACTGGCCGGAGCTGTGGAAGGAAGAG
ATCGAGAAGGATAACAAGTAGTAACTGTAAATAGACTAGATATTTTCTCCACTGGAAATAGCAGTACGCTTGTTGTCGAC
ACTTGATACTCGTACAGGCTACAGCAGTGAAACTATGAAACAATTCGCAGTGGCTTTGCAAGGTCTCTGCAATAGGTAGA
ATGGCCAAAACTGAACACTTGGCAGCAAAAATGAGAAAACTGAATGAACCCCCAGGCCGGCCAGAATACAACACTGATGA
GTCAGTTGCTTTCTGTTCTCCTAAAGCAGATGGATGGGTTATTTTGATCAATCGAGCCACCTGGTGACGCCATCTTCTTC
GCTCACCGCTGCGAGGATCTCGATATAGACCTCCAATACAGCCTGCAGACAATTTTAACTACCATCAGGAAACAAGATAC
TACCAACAGAACTGTTTATTTTCGAGTTAGTCAATGGCAGTGGAAATTTCCTGGTCCAGAACATTAATGGGTCCTGTTTT
GTGATAAAAATAAAGATTCGCTATTACCATTGA--CGGGGACAGGTGTGCATCTTATAACTCTTAAATATTGCTGTCATG
TGCATGAAATGGTGATTCATAAATGGGCATACCAAAGGATTTCTGTGGTTGACCAGTTTGCAGCATTCCAGTAAAGACCC
TTCCAGCGTCCAGCTCTCCCAAATATCGAAAGCATGACTGGCAAATACGAGCTCCGCCTTCTTATTAACCTAAAAACAAG
TTTAAAAGGGAGTTAAACATAGTAAATCGGCAATCTACATAAAGCATTTTACTTTCAATGCTGAAAATTATACAGGGATC
GTGGAATGTAAGAACAAATCAGTGATTCTATTGATAAACTCCTCGAAGCTCCTGCAATGGAATCGAGCATGGAGCAAGCA
CTTCACAACTATTCAAAGTAAATTCTCTAAAAAAT--------AGATCGAACGAAAGAGGAGTACCAGATACACTAGGAC
TT----ATTTTAAGCACATCATGGAATTAAGTTGGTAGTTTTCAACCAGAACAA-AAAAATGGGACAATGGGTAAAGCAT
AAAAAATGACGTGACCATAGATGCCATTGCATCTAAAAAT--
>SNPs
-----S---------S-----S----------------S------------------------S----------------
---------------------SSS-------S-------------S-----------SS---------------------
--------S------------------------S---S------------------------------------------
----------SSSSSSSSSSSSSS-------S-S-----S------S-S-------------------------------
-------------------------------------------------------------S------------------
--------------S---------------S-------S--------S-----------------S--SS----------
---------SS----SSSSS-S--SSS--SSSSSSSS-----S----------------------------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-------------------S----S------S-SS--S
SSS-S------------------------------S-----S--------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-------------------S----------------------------------S-S-------------------SS--
--------------S-----------------------------------------------------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
-------------------S--S--------S--S---------------------S------------S------S---
-----------------------S--------------------------------------------------------
---------------S------------------------------------------------------------SSS-
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-----------------------------------------------------------------------S--------
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----------------------------------------------------------------------------S---
---------------------------------------------------------------S----------------
-------------------------------------------------------S------------------------
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----------S----------------------------S----------------------------------------
S-------------------------------------------------------------------------------
-------------------------------------S--------------S---------------------------
------------------------------------------------------------------------S-------
--------S--------S-----S-----------------S----------S---------------------------
-------------------------------------S------------------------------------------
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S-------------------------------------------------------------------S-----------
---------------------SSSS-SSSS--SSSSSSS--S-----------------------S-------------S
-SSSSS--S----S---------------------------------S------S----------S-------------S
----------------------------------------SS
>forward_851
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-------------------------------AAGGGCCTGTAAAACTCCCG-----------------------------
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>reverse_2629
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--------------------------------------------------------------------CTGGAGCAAGCA
CTTCACAAC-----------------------------------------------------------------------
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------------------------------------------
