Multiple sequence alignment - TraesCS1D01G187700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G187700 chr1D 100.000 3962 0 0 1 3962 259776644 259780605 0.000000e+00 7317.0
1 TraesCS1D01G187700 chr1D 100.000 29 0 0 160 188 28311588 28311560 2.000000e-03 54.7
2 TraesCS1D01G187700 chr1B 92.447 2489 92 28 1525 3961 353276739 353274295 0.000000e+00 3467.0
3 TraesCS1D01G187700 chr1B 92.546 1355 43 16 66 1400 353278129 353276813 0.000000e+00 1890.0
4 TraesCS1D01G187700 chr1A 91.124 2028 70 42 2033 3961 341016399 341014383 0.000000e+00 2647.0
5 TraesCS1D01G187700 chr1A 89.860 1144 50 21 913 2037 341017657 341016561 0.000000e+00 1410.0
6 TraesCS1D01G187700 chr1A 89.344 732 48 20 1 720 341018716 341018003 0.000000e+00 893.0
7 TraesCS1D01G187700 chr4B 78.710 310 50 13 1033 1331 646924797 646924493 4.040000e-45 193.0
8 TraesCS1D01G187700 chr4D 78.221 326 51 16 1038 1351 502561188 502560871 1.450000e-44 191.0
9 TraesCS1D01G187700 chr6D 100.000 28 0 0 162 189 326762379 326762406 7.000000e-03 52.8
10 TraesCS1D01G187700 chr3D 100.000 28 0 0 162 189 388787644 388787671 7.000000e-03 52.8
11 TraesCS1D01G187700 chr3D 100.000 28 0 0 161 188 538376007 538376034 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G187700 chr1D 259776644 259780605 3961 False 7317.0 7317 100.000000 1 3962 1 chr1D.!!$F1 3961
1 TraesCS1D01G187700 chr1B 353274295 353278129 3834 True 2678.5 3467 92.496500 66 3961 2 chr1B.!!$R1 3895
2 TraesCS1D01G187700 chr1A 341014383 341018716 4333 True 1650.0 2647 90.109333 1 3961 3 chr1A.!!$R1 3960

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
850 880 0.30289 GTGATCGCGAGCTTCCATTG 59.697 55.0 26.10 0.00 0.00 2.82 F
1834 2018 0.03831 AGAGCAAGGGTAGGGTTTGC 59.962 55.0 0.46 0.46 45.64 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2649 3021 0.942410 GCTCGGTGCTACAAACACGA 60.942 55.0 0.0 0.0 38.98 4.35 R
3654 4093 0.299597 AGCGTGAACAAACGACGAAC 59.700 50.0 0.0 0.0 46.49 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.108601 ACCCCGTGACCCAAGAATTTAA 59.891 45.455 0.00 0.00 0.00 1.52
80 84 9.389755 CCAAATTTAGGAAACAGAAAAGGAAAA 57.610 29.630 0.00 0.00 0.00 2.29
84 88 4.274978 AGGAAACAGAAAAGGAAAACCGA 58.725 39.130 0.00 0.00 0.00 4.69
133 137 4.717280 CCCATCTAGTCCCAGTTTAGTTCT 59.283 45.833 0.00 0.00 0.00 3.01
135 139 4.803098 TCTAGTCCCAGTTTAGTTCTGC 57.197 45.455 0.00 0.00 0.00 4.26
173 177 4.717927 CGATTTGCGTGCGTGCGT 62.718 61.111 3.11 0.00 37.81 5.24
174 178 3.158813 GATTTGCGTGCGTGCGTG 61.159 61.111 3.11 0.00 37.81 5.34
308 313 2.125512 CCAGCTGTACGCCACTCC 60.126 66.667 13.81 0.00 40.39 3.85
309 314 2.650116 CCAGCTGTACGCCACTCCT 61.650 63.158 13.81 0.00 40.39 3.69
310 315 1.446792 CAGCTGTACGCCACTCCTG 60.447 63.158 5.25 0.00 40.39 3.86
311 316 2.815647 GCTGTACGCCACTCCTGC 60.816 66.667 0.00 0.00 0.00 4.85
312 317 2.656646 CTGTACGCCACTCCTGCA 59.343 61.111 0.00 0.00 0.00 4.41
313 318 1.446792 CTGTACGCCACTCCTGCAG 60.447 63.158 6.78 6.78 0.00 4.41
314 319 1.877576 CTGTACGCCACTCCTGCAGA 61.878 60.000 17.39 0.00 0.00 4.26
422 434 2.437716 CCCGTGTTAATGGCGGCT 60.438 61.111 11.43 0.00 43.70 5.52
457 469 8.686334 ACATCATATCCAACCTGTTTAAACATC 58.314 33.333 20.83 0.00 38.41 3.06
522 534 1.202428 GCCCTCCGAGATATTATCGCC 60.202 57.143 0.00 0.00 38.84 5.54
554 566 0.884704 CACAAACAGGTCCACTCGGG 60.885 60.000 0.00 0.00 38.37 5.14
644 668 1.286305 AACCCTATCCACGGCCCATT 61.286 55.000 0.00 0.00 0.00 3.16
693 717 2.612221 CGCCGTCTATTTATTCCCCTCC 60.612 54.545 0.00 0.00 0.00 4.30
698 722 2.561419 TCTATTTATTCCCCTCCGCGAG 59.439 50.000 8.23 2.69 0.00 5.03
728 756 6.238293 CCTTCGTCCTTCCGGTTTATTTATTC 60.238 42.308 0.00 0.00 0.00 1.75
729 757 5.118286 TCGTCCTTCCGGTTTATTTATTCC 58.882 41.667 0.00 0.00 0.00 3.01
776 806 2.802740 CTTTTTCCTCAAGCGGGCGC 62.803 60.000 0.00 0.00 42.33 6.53
803 833 2.415512 GAGGACTCGAAACAAATTCCCG 59.584 50.000 0.00 0.00 34.34 5.14
850 880 0.302890 GTGATCGCGAGCTTCCATTG 59.697 55.000 26.10 0.00 0.00 2.82
1372 1550 5.976870 TCCAGAGGAAATATAGGTCCCTTTT 59.023 40.000 0.00 0.00 34.13 2.27
1452 1630 8.918202 TTGTCTATGATTTTAACCAGTCAGTT 57.082 30.769 0.00 0.00 0.00 3.16
1486 1664 4.703897 TCATTGTTCTTTTCCGAGTCTGT 58.296 39.130 0.00 0.00 0.00 3.41
1507 1685 6.650807 TCTGTTGTCTTAATCCACATCTGTTC 59.349 38.462 0.00 0.00 0.00 3.18
1561 1743 8.683615 CCAGAGTTAATTATTGTTAAGGGGAAC 58.316 37.037 0.00 0.00 0.00 3.62
1600 1782 7.696453 CCTATGTTTTTCTTACCGTAGCAAATG 59.304 37.037 0.00 0.00 0.00 2.32
1601 1783 5.216648 TGTTTTTCTTACCGTAGCAAATGC 58.783 37.500 0.00 0.00 42.49 3.56
1619 1801 8.343974 GCAAATGCTAGTATGTAGTACGTTTA 57.656 34.615 0.00 0.00 36.91 2.01
1712 1896 1.069636 CAGCACCGAAAACTCTCTTGC 60.070 52.381 0.00 0.00 0.00 4.01
1822 2006 5.163673 GGAATTTTGGCTAGAGAAGAGCAAG 60.164 44.000 0.00 0.00 41.98 4.01
1834 2018 0.038310 AGAGCAAGGGTAGGGTTTGC 59.962 55.000 0.46 0.46 45.64 3.68
1940 2124 3.747099 AAAAATCCGATCTCGCACTTG 57.253 42.857 0.00 0.00 38.18 3.16
2057 2419 0.100503 AGCTGTTCGTTGTTTGTGGC 59.899 50.000 0.00 0.00 0.00 5.01
2188 2550 6.033966 CGCTGTTCAGAACATACACACTATA 58.966 40.000 16.53 0.00 41.26 1.31
2189 2551 6.697455 CGCTGTTCAGAACATACACACTATAT 59.303 38.462 16.53 0.00 41.26 0.86
2221 2583 8.198109 AGTAGATGATCAGTTTTATGTACGCTT 58.802 33.333 0.09 0.00 0.00 4.68
2263 2625 7.557358 TGGCAGACACATAAATTCAACATAGAT 59.443 33.333 0.00 0.00 0.00 1.98
2264 2626 9.056005 GGCAGACACATAAATTCAACATAGATA 57.944 33.333 0.00 0.00 0.00 1.98
2410 2782 4.631377 CCTCGAGCAAATGTTTACATCTGA 59.369 41.667 6.99 0.00 35.10 3.27
2461 2833 7.056006 TCTAACACAAATAGGATGCATGATGT 58.944 34.615 2.46 0.00 0.00 3.06
2462 2834 6.534475 AACACAAATAGGATGCATGATGTT 57.466 33.333 2.46 0.59 0.00 2.71
2481 2853 5.766150 TGTTGTGTTCCTGGAATTGTTAG 57.234 39.130 13.07 0.00 0.00 2.34
2497 2869 5.351948 TTGTTAGCTGACCTATGCATACA 57.648 39.130 6.13 0.00 0.00 2.29
2589 2961 2.704572 CTCGATTTCTGCTTCCCTGTT 58.295 47.619 0.00 0.00 0.00 3.16
2610 2982 7.664318 CCTGTTGGAACCTACAGTTTATACTTT 59.336 37.037 24.83 0.00 44.27 2.66
2649 3021 2.203153 AGCAAGCGGTTTGGACGT 60.203 55.556 6.71 0.00 37.26 4.34
2658 3030 0.728542 GGTTTGGACGTCGTGTTTGT 59.271 50.000 9.92 0.00 0.00 2.83
2718 3090 1.548357 GCTTCCAGCTCTCCACCTCA 61.548 60.000 0.00 0.00 38.45 3.86
2760 3132 1.142465 CAATGCTACCTGGATGAGCCT 59.858 52.381 0.00 0.00 37.63 4.58
2809 3181 3.672241 CGATTTTGTTTCCACGAATCCCC 60.672 47.826 0.00 0.00 30.07 4.81
2877 3249 1.525995 CACGAAAGGTGGCCTGTGT 60.526 57.895 3.32 0.00 43.16 3.72
3184 3568 4.761739 CCTGGTGCTAAATGAGACTTTGAA 59.238 41.667 0.00 0.00 0.00 2.69
3212 3597 3.794564 GGATGAAACGGTTGTGTTGAAAC 59.205 43.478 0.00 0.00 31.10 2.78
3223 3608 4.584327 TGTGTTGAAACGAGATCAGAGA 57.416 40.909 0.00 0.00 0.00 3.10
3235 3620 5.997746 ACGAGATCAGAGATTTTGTTTCCAA 59.002 36.000 0.00 0.00 0.00 3.53
3281 3666 4.676546 AGAAACTTCTGTTTTCTTGCTGC 58.323 39.130 0.00 0.00 45.36 5.25
3282 3667 4.400567 AGAAACTTCTGTTTTCTTGCTGCT 59.599 37.500 0.00 0.00 45.36 4.24
3283 3668 3.705043 ACTTCTGTTTTCTTGCTGCTG 57.295 42.857 0.00 0.00 0.00 4.41
3285 3670 3.445096 ACTTCTGTTTTCTTGCTGCTGTT 59.555 39.130 0.00 0.00 0.00 3.16
3286 3671 4.640201 ACTTCTGTTTTCTTGCTGCTGTTA 59.360 37.500 0.00 0.00 0.00 2.41
3287 3672 4.552166 TCTGTTTTCTTGCTGCTGTTAC 57.448 40.909 0.00 0.00 0.00 2.50
3288 3673 3.315191 TCTGTTTTCTTGCTGCTGTTACC 59.685 43.478 0.00 0.00 0.00 2.85
3338 3740 2.380064 TGGACTGGCCATGTTTCTTT 57.620 45.000 5.51 0.00 43.33 2.52
3513 3937 2.902608 GGAAGGTTTCCCCATCCTTTT 58.097 47.619 0.00 0.00 44.30 2.27
3517 3941 3.510459 AGGTTTCCCCATCCTTTTCAAG 58.490 45.455 0.00 0.00 34.66 3.02
3582 4007 5.210715 GTTCCGGTGTCTACACTATATTCG 58.789 45.833 12.65 6.75 45.73 3.34
3672 4111 0.025256 TGTTCGTCGTTTGTTCACGC 59.975 50.000 0.00 0.00 40.14 5.34
3694 4133 3.073678 TCATCACCACGACCTTTCATTG 58.926 45.455 0.00 0.00 0.00 2.82
3753 4194 0.036388 TCCTGAGGAATCAACGGTGC 60.036 55.000 0.00 0.00 0.00 5.01
3922 4384 4.095410 TGAATATGGCTTGTGCTTTTCG 57.905 40.909 0.00 0.00 39.59 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.154847 GTTTCCTAAATTTGGTACGTACAGTAT 57.845 33.333 26.02 12.78 37.69 2.12
44 45 6.991531 TGTTTCCTAAATTTGGTACGTACAGT 59.008 34.615 26.02 3.35 0.00 3.55
51 52 8.635328 TCCTTTTCTGTTTCCTAAATTTGGTAC 58.365 33.333 0.00 4.86 0.00 3.34
52 53 8.770010 TCCTTTTCTGTTTCCTAAATTTGGTA 57.230 30.769 0.00 0.00 0.00 3.25
53 54 7.669089 TCCTTTTCTGTTTCCTAAATTTGGT 57.331 32.000 0.00 0.00 0.00 3.67
54 55 8.956533 TTTCCTTTTCTGTTTCCTAAATTTGG 57.043 30.769 0.00 0.00 0.00 3.28
179 183 1.601162 GGCTCAATTACCGCATGCATG 60.601 52.381 22.70 22.70 0.00 4.06
180 184 0.670162 GGCTCAATTACCGCATGCAT 59.330 50.000 19.57 7.65 0.00 3.96
422 434 8.668653 ACAGGTTGGATATGATGTGGATTAATA 58.331 33.333 0.00 0.00 0.00 0.98
457 469 3.051392 GCGCCCCACTCGGAATTTG 62.051 63.158 0.00 0.00 0.00 2.32
480 492 0.994263 GTTCGTAAATGTCGGGACCG 59.006 55.000 3.96 3.96 41.35 4.79
554 566 5.501413 GCTCGGTAATTACGCTTTTTACCTC 60.501 44.000 9.46 0.00 41.69 3.85
644 668 0.911045 GGAGGAAGGGGGACGGTTAA 60.911 60.000 0.00 0.00 0.00 2.01
693 717 2.881352 GACGAAGGAAGCCTCGCG 60.881 66.667 0.00 0.00 37.36 5.87
698 722 1.448013 CGGAAGGACGAAGGAAGCC 60.448 63.158 0.00 0.00 35.47 4.35
736 764 0.673644 AATGCGTCGTTGGAGAAGGG 60.674 55.000 0.00 0.00 0.00 3.95
782 812 2.415512 CGGGAATTTGTTTCGAGTCCTC 59.584 50.000 0.00 0.00 34.98 3.71
783 813 2.423577 CGGGAATTTGTTTCGAGTCCT 58.576 47.619 0.00 0.00 34.98 3.85
784 814 1.467342 CCGGGAATTTGTTTCGAGTCC 59.533 52.381 0.00 0.00 34.98 3.85
785 815 2.415512 CTCCGGGAATTTGTTTCGAGTC 59.584 50.000 0.00 0.00 34.98 3.36
786 816 2.423577 CTCCGGGAATTTGTTTCGAGT 58.576 47.619 0.00 0.00 34.98 4.18
787 817 1.737793 CCTCCGGGAATTTGTTTCGAG 59.262 52.381 0.00 0.00 34.98 4.04
788 818 1.348366 TCCTCCGGGAATTTGTTTCGA 59.652 47.619 0.00 0.00 38.93 3.71
789 819 1.816074 TCCTCCGGGAATTTGTTTCG 58.184 50.000 0.00 0.00 38.93 3.46
790 820 3.130516 GGAATCCTCCGGGAATTTGTTTC 59.869 47.826 0.00 0.00 45.78 2.78
791 821 3.096852 GGAATCCTCCGGGAATTTGTTT 58.903 45.455 0.00 0.00 45.78 2.83
803 833 1.776034 GCGCACGAATGGAATCCTCC 61.776 60.000 0.30 0.00 42.81 4.30
870 900 2.634777 GAGCTCCTCGATCGACCG 59.365 66.667 15.15 7.43 0.00 4.79
931 1109 0.607489 ACCCTTTGTAGCAGCAGCAG 60.607 55.000 3.17 0.00 45.49 4.24
932 1110 0.890542 CACCCTTTGTAGCAGCAGCA 60.891 55.000 3.17 0.00 45.49 4.41
933 1111 0.890996 ACACCCTTTGTAGCAGCAGC 60.891 55.000 0.00 0.00 36.32 5.25
1176 1354 2.584391 GGCCTCCCACACGAAGTCT 61.584 63.158 0.00 0.00 41.61 3.24
1372 1550 5.940192 AAAAATCATAGACAAGCACACGA 57.060 34.783 0.00 0.00 0.00 4.35
1411 1589 0.548682 ACAAGCTCATGAGGGGGTCT 60.549 55.000 23.89 9.26 0.00 3.85
1452 1630 7.011295 GGAAAAGAACAATGATTCAAGCACAAA 59.989 33.333 0.00 0.00 0.00 2.83
1486 1664 8.321353 AGTATGAACAGATGTGGATTAAGACAA 58.679 33.333 0.00 0.00 0.00 3.18
1507 1685 9.809096 ACGATTCAGATATATTTGGCTAGTATG 57.191 33.333 3.59 0.00 0.00 2.39
1561 1743 6.659242 AGAAAAACATAGGAGTACATGGGTTG 59.341 38.462 0.00 0.00 0.00 3.77
1565 1747 7.011109 CGGTAAGAAAAACATAGGAGTACATGG 59.989 40.741 0.00 0.00 0.00 3.66
1573 1755 6.040209 TGCTACGGTAAGAAAAACATAGGA 57.960 37.500 0.00 0.00 0.00 2.94
1574 1756 6.730960 TTGCTACGGTAAGAAAAACATAGG 57.269 37.500 0.00 0.00 0.00 2.57
1575 1757 7.218204 GCATTTGCTACGGTAAGAAAAACATAG 59.782 37.037 0.00 0.00 38.21 2.23
1600 1782 9.780413 AGAAAACTAAACGTACTACATACTAGC 57.220 33.333 0.00 0.00 0.00 3.42
1632 1814 1.608590 CAGGCTCCAATTTGTGACGTT 59.391 47.619 0.00 0.00 0.00 3.99
1691 1875 2.213499 CAAGAGAGTTTTCGGTGCTGT 58.787 47.619 0.00 0.00 0.00 4.40
1737 1921 8.929487 AGCACTAAAAATAGTTCTAGCCTCTAT 58.071 33.333 0.00 0.00 0.00 1.98
1738 1922 8.307582 AGCACTAAAAATAGTTCTAGCCTCTA 57.692 34.615 0.00 0.00 0.00 2.43
1739 1923 7.189079 AGCACTAAAAATAGTTCTAGCCTCT 57.811 36.000 0.00 0.00 0.00 3.69
1740 1924 8.943909 TTAGCACTAAAAATAGTTCTAGCCTC 57.056 34.615 0.00 0.00 30.02 4.70
1741 1925 9.907229 ATTTAGCACTAAAAATAGTTCTAGCCT 57.093 29.630 6.92 0.00 38.38 4.58
1742 1926 9.937175 CATTTAGCACTAAAAATAGTTCTAGCC 57.063 33.333 6.92 0.00 38.38 3.93
1743 1927 9.937175 CCATTTAGCACTAAAAATAGTTCTAGC 57.063 33.333 6.92 0.00 38.38 3.42
1822 2006 2.414785 CGCCATGCAAACCCTACCC 61.415 63.158 0.00 0.00 0.00 3.69
1834 2018 1.233019 CTTTGGAGGATAGCGCCATG 58.767 55.000 2.29 0.00 0.00 3.66
1940 2124 7.538678 CACAAACTGAAAAGAATATACTGTGGC 59.461 37.037 0.00 0.00 0.00 5.01
2057 2419 5.661458 ACGTGTACTATTTCCCATCTTCTG 58.339 41.667 0.00 0.00 0.00 3.02
2193 2555 9.627395 GCGTACATAAAACTGATCATCTACTAT 57.373 33.333 0.00 0.00 0.00 2.12
2205 2567 6.032722 AGCGAATAAGCGTACATAAAACTG 57.967 37.500 0.00 0.00 43.00 3.16
2214 2576 1.592350 GCAGCAAGCGAATAAGCGTAC 60.592 52.381 0.00 0.00 43.00 3.67
2217 2579 4.275282 GCAGCAAGCGAATAAGCG 57.725 55.556 0.00 0.00 43.00 4.68
2263 2625 4.521130 AAAAGCAGTCATCACTCGTCTA 57.479 40.909 0.00 0.00 0.00 2.59
2264 2626 3.393089 AAAAGCAGTCATCACTCGTCT 57.607 42.857 0.00 0.00 0.00 4.18
2265 2627 5.105752 AGATAAAAGCAGTCATCACTCGTC 58.894 41.667 0.00 0.00 0.00 4.20
2266 2628 5.078411 AGATAAAAGCAGTCATCACTCGT 57.922 39.130 0.00 0.00 0.00 4.18
2267 2629 7.436376 TGATAAGATAAAAGCAGTCATCACTCG 59.564 37.037 0.00 0.00 0.00 4.18
2340 2709 4.885907 TGGCACAGAGTAGGTACATACTAC 59.114 45.833 19.45 12.96 40.80 2.73
2341 2710 5.120054 TGGCACAGAGTAGGTACATACTA 57.880 43.478 19.45 0.28 36.13 1.82
2342 2711 3.977312 TGGCACAGAGTAGGTACATACT 58.023 45.455 19.51 19.51 38.72 2.12
2461 2833 4.278170 CAGCTAACAATTCCAGGAACACAA 59.722 41.667 3.18 0.00 0.00 3.33
2462 2834 3.820467 CAGCTAACAATTCCAGGAACACA 59.180 43.478 3.18 0.00 0.00 3.72
2481 2853 5.391310 GCATATTGTGTATGCATAGGTCAGC 60.391 44.000 6.67 1.01 46.89 4.26
2610 2982 3.913799 TGAACTTCCCAAGATGAACCCTA 59.086 43.478 0.00 0.00 0.00 3.53
2649 3021 0.942410 GCTCGGTGCTACAAACACGA 60.942 55.000 0.00 0.00 38.98 4.35
2658 3030 2.986979 TGGACGTGCTCGGTGCTA 60.987 61.111 13.32 0.00 43.37 3.49
2718 3090 2.105477 AGATAATGCATTCTGGCCGTCT 59.895 45.455 16.86 6.49 0.00 4.18
2760 3132 1.198759 GGTACAGAACCCAGCTCCCA 61.199 60.000 0.00 0.00 43.16 4.37
2817 3189 2.071688 TCGAGAACTTCAGCTTCAGC 57.928 50.000 0.00 0.00 42.49 4.26
2877 3249 1.299850 CACAAGCACCGAGTCGACA 60.300 57.895 19.50 0.00 0.00 4.35
3184 3568 1.302511 AACCGTTTCATCCGCAGCT 60.303 52.632 0.00 0.00 0.00 4.24
3235 3620 6.126409 TGACAAGGAACACAAACTAGGAAAT 58.874 36.000 0.00 0.00 0.00 2.17
3280 3665 5.105310 TCAGAATTGAGAGTAGGGTAACAGC 60.105 44.000 0.00 0.00 39.74 4.40
3281 3666 6.153680 AGTCAGAATTGAGAGTAGGGTAACAG 59.846 42.308 0.00 0.00 32.98 3.16
3282 3667 6.017192 AGTCAGAATTGAGAGTAGGGTAACA 58.983 40.000 0.00 0.00 32.98 2.41
3283 3668 6.532988 AGTCAGAATTGAGAGTAGGGTAAC 57.467 41.667 0.00 0.00 32.98 2.50
3285 3670 6.253758 TCAAGTCAGAATTGAGAGTAGGGTA 58.746 40.000 9.25 0.00 32.98 3.69
3286 3671 5.087323 TCAAGTCAGAATTGAGAGTAGGGT 58.913 41.667 9.25 0.00 32.98 4.34
3287 3672 5.667539 TCAAGTCAGAATTGAGAGTAGGG 57.332 43.478 9.25 0.00 32.98 3.53
3288 3673 7.064371 CACAATCAAGTCAGAATTGAGAGTAGG 59.936 40.741 17.71 6.85 39.86 3.18
3377 3779 3.561725 GGCCAGTCATGCAATTAGTAGAC 59.438 47.826 0.00 0.00 0.00 2.59
3378 3780 3.199727 TGGCCAGTCATGCAATTAGTAGA 59.800 43.478 0.00 0.00 0.00 2.59
3513 3937 6.706270 GGCGAGACCTTATTTATTCATCTTGA 59.294 38.462 0.00 0.00 34.51 3.02
3517 3941 6.861065 TTGGCGAGACCTTATTTATTCATC 57.139 37.500 0.00 0.00 40.22 2.92
3549 3974 1.080569 CACCGGAACAAAGCCATGC 60.081 57.895 9.46 0.00 0.00 4.06
3654 4093 0.299597 AGCGTGAACAAACGACGAAC 59.700 50.000 0.00 0.00 46.49 3.95
3672 4111 2.455674 TGAAAGGTCGTGGTGATGAG 57.544 50.000 0.00 0.00 0.00 2.90
3801 4252 5.895928 TCCGTGAGATGAGATAGAAAACTG 58.104 41.667 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.