>input_sequence_40274
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---------------------------------------------------------ATGGGGGCGGGGGTCTCGAGCTT
TTTCTTCGGCGCGGCGGCGGAGGCTGCGCCGGGTGCTGCGGGCCTGGGCGACCTGCCGGAGCTCTGCGCCGCGCAGGTGC
TGCTCCGCCTCGACGCGCCGGAGATCTGCCGCCTCGCGCGCCTCAACCACGCCTTCCGCGGCGCCGCGGGGGCAGACTTC
GTGTGGGAGGCCAAGCTGCCGGAGAACTACCGCCACCTGATCGGGTACGTCGAGGGCGGGGGCGAGGAGGGCAGGCGCCG
GCGGCGCCGGGCCGGGACCAAGGAGATCTACGCCAGGCTCTCCAGGCCCGTCTCTTTCGACGACGGCACCAAGGTCAGAT
ATTCTTCCAGAGGAAATATAGGTCCCTTTTCGTGTGCTTGTCTATGATTTTTTTTTCCAAGGCAAACAAGACCCCCTCAT
GAGCTTGTCTATGATTTTAACCAGTCAGTTTTGTGCTTGAATCATTGTTCTTTTCCGAGTCTGTTGTCTTAATCCACATC
TGTTCATACTAGCCAAATAT----ATCTGAATCGTTCCAGAGTTAATTATTGTTAAGGGGAACAACCCATGTACTCCTAT
GTTTTTCTTACCGTAGCAAATGCTAGTATGTAGTACGTTTAGTTTTCTGAAAAAACGTCACAAATTGGAGCCTGAATGCC
TGATTTAATTATTCTCTGAA-TTTAA-AACAATTACAGCACCGAAAACTCTCTTGCTTCCTTTTTATCTATAATCTATAT
ATAGAGGCTAGAACTATTTTTAGTGCTAAATGGCTTATATTTTGTGTGCTTTGTAATTGCAGGAATTTTGGCTAGAGAAG
AGCAAGGGTAGGGTTTGCATGGCGCTATCCTCCAAAGCTCTGGTCATAACTGGCATCGATGACAGGAGATATTGGACACA
CATGCCGACCACAGAATCGAGGTAAAAATCCGATCTCGCACTTGCCACAGTATA-----------TTCTTTTCAGTTTGT
GTTAGAAAGATGTGATGTTT-GAGTTGCAACTTGCAATTAAATGCCGCAACAACATACTTAATGGTGAGAT---------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TGA
GCTGTTCGTTGTTTGTGGCAGAAGATGGGAAATAGTACACGTCTACTTTTGCATGCTTCTTCCCCTGAGCACAAGAGGCA
TTTGAGAATTATGCACCTGTACATTTAATACATGAAAAATTTGTCCGCTGTTCAGAACATACACACTATATTATATAGTA
GATGATCAGTTTTATGTACGCTTATTCGCTTGCTGCTCTGGCAGACACATAAATTCAACATAGATAGACGAGTGATGACT
GCTTTTATCTTATCA-------CAAAAAGCTAATGTAGACGCAGTCCTTCCAAATGATGGCAGTAGATGTAGTATGTACC
TACTCTGTGCCAGTGGAAGA---TATCAGACTGTGATACCTCGAGCAAATGTTTACATCTGAGCAGTATCTTTCAATGTA
ATTATATTCTAACACAAATAGGATGCATGATGTTGTGTTCCTGGAATTGTTAGCTGACCTATGCATACACAATATGCTCA
TGCAGGTTCCAGTCCGTGGCATACCTTCAGCAAATCTGGTGGTTTGAAGTGGTTGGGGAGCTCGATTTCTGCTTCCCTGT
TGGAACCTACAGTTTATACTTTAGGGTTCATCTTGGGAAGTTCAGCAAGCGGTTTGGACGTCGTGTTTGTAGCACCGAGC
ACGTCCACGGCTGGAACAAGAAGCCGGTGCGCTTCCAGCTCTCCACCTCAGACGGCCAGAATGCATTATCTCAATGCTAC
CTGGATGAGCCTGGGAGCTGGGTTCTGTACCATGCAGGCGATTTTGTTTCCACGAATCCCCGCCAGGCGCTGAAGCTGAA
GTTCTCGATGGCGCAGATCGACTGCACGCACACGAAAGGTGGCCTGTGTGTCGACTCGGTGCTTGTGTACCCCAAGGGCT
TTCAGCAAGAGAAGGTGGTGACCGGCAAGATCTCAGAGATGCGATCGTC------------GTAG---------------
--------------------------------------------------------------------------------
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-----------------------
>chr1D_1_TraesCS1D01G187700
ACCCCGTGACCCAAGAATTTAATTTAATTTAAATCCATAATAATACTGTACGTACC---AAATTTAGGAAACAGAAAAGG
AAAACCGAGTGCGACATGCCGGGCATCGACACTCCCATCTAGTCCCAGTTTAGTTCTGCGCCGTGGCAACGCGGTCTCGC
GATTTGCGTGCGTGCGTGCGTGCATGCATGCGGTAATTGAGCCGGATTTGGATAAGAATAGATAACCCCGCCAGCCTGTC
CGTGCGAGCCATG-CCGTGGAAGTCTCCAGGCGCGACGGGGCTGCTTCCTTCCCTCCAGCTGTACGCCACTCCTGCAGAC
CTGCACCCACCGCACGGGCCCGTCG-CATGGACCGCCC-GGTAGCCCACAG--CCATCATCAGCCCCGTGCAGCGGACCG
CGTCCACGGACGTCCCGTGT---TAATGGCGGCTATTAATCCACATCATATCCAACCTGTTTAAACATCAAATTCCGAGT
GGGGCGCGCTACGGTCCCGACATTTACGAACGTGCCCTCCGAGATATTATCGCCGGCGCGAAGCGTCACAAACAGGTCCA
CTCGGGAGGTAAAAA-GCGTAATTACCGAGCACTTTCAGGGGGTAGAAACT-----------AGAAAGGCAGCGTGAACT
GCCCATGAAACCCTATCCACGGCCCATTTAACCGTCCCCCTTCCTCCCCCCCGCTCGCCGTCTATTTATTCCCCTCCGCG
AGGCTTCCTTCGTCCTTCCGGTT----TATTTATTCCCCCCCCC--CCTTCTCCAACGACGCATTGCTTTTTCCTCAAGC
GGGCGCGGCGCGAGGACTCGAAACAAATTCCCGGAGGATTCCATTCGTGCGCGGGGGGGCGTGATCGCGAGCTTCCATTG
CGGGCGCGGAATCGGGTGCCGGTCGATCGAGGAGCTCCTTCGATTCGGGGATCGGCTTCTGCGC----------------
--------------------------------------------------------------------------------
----------------------------------------------------GGGATTCGGTTCCCATCTGCTGCTGCTA
CAAAGGGTGTGCGGGGCGGGCCTCTGAGGTCGTTGCGACTGGAGGAGGCGAGGAGCCATGGGGGCGGGGGTCTCGAGCTT
TTTCTTCGGCGCGGCGGCGGAGGCTGCGCCGGGTGCTGCGGGCCTGGGCGACCTGCCGGAGCTCTGCGCCGCGCAGGTGC
TGCTCCGCCTCGACGCGCCGGAGATCTGCCGCCTCGCGCGCCTCAACCACGCCTTCCGCGGCGCCGCGGGGGCAGACTTC
GTGTGGGAGGCCAAGCTGCCGGAGAACTACCGCCACCTGATCGGGTACGTCGAGGGCGGGGGCGAGGAGGGCAGGCGCCG
GCGGCGCCGGGCCGGGACCAAGGAGATCTACGCCAGGCTCTCCAGGCCCGTCTCTTTCGACGACGGCACCAAGGTCAGAT
ATTCTTCCAGAGGAAATATAGGTCCCTTTTCGTGTGCTTGTCTATGATTTTTTTTTCCAAGGCAAACAAGACCCCCTCAT
GAGCTTGTCTATGATTTTAACCAGTCAGTTTTGTGCTTGAATCATTGTTCTTTTCCGAGTCTGTTGTCTTAATCCACATC
TGTTCATACTAGCCAAATAT----ATCTGAATCGTTCCAGAGTTAATTATTGTTAAGGGGAACAACCCATGTACTCCTAT
GTTTTTCTTACCGTAGCAAATGCTAGTATGTAGTACGTTTAGTTTTCTGAAAAAACGTCACAAATTGGAGCCTGAATGCC
TGATTTAATTATTCTCTGAA-TTTAA-AACAATTACAGCACCGAAAACTCTCTTGCTTCCTTTTTATCTATAATCTATAT
ATAGAGGCTAGAACTATTTTTAGTGCTAAATGGCTTATATTTTGTGTGCTTTGTAATTGCAGGAATTTTGGCTAGAGAAG
AGCAAGGGTAGGGTTTGCATGGCGCTATCCTCCAAAGCTCTGGTCATAACTGGCATCGATGACAGGAGATATTGGACACA
CATGCCGACCACAGAATCGAGGTAAAAATCCGATCTCGCACTTGCCACAGTATA-----------TTCTTTTCAGTTTGT
GTTAGAAAGATGTGATGTTT-GAGTTGCAACTTGCAATTAAATGCCGCAACAACATACTTAATGGTGAGAT---------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TGA
GCTGTTCGTTGTTTGTGGCAGAAGATGGGAAATAGTACACGTCTACTTTTGCATGCTTCTTCCCCTGAGCACAAGAGGCA
TTTGAGAATTATGCACCTGTACATTTAATACATGAAAAATTTGTCCGCTGTTCAGAACATACACACTATATTATATAGTA
GATGATCAGTTTTATGTACGCTTATTCGCTTGCTGCTCTGGCAGACACATAAATTCAACATAGATAGACGAGTGATGACT
GCTTTTATCTTATCA-------CAAAAAGCTAATGTAGACGCAGTCCTTCCAAATGATGGCAGTAGATGTAGTATGTACC
TACTCTGTGCCAGTGGAAGA---TATCAGACTGTGATACCTCGAGCAAATGTTTACATCTGAGCAGTATCTTTCAATGTA
ATTATATTCTAACACAAATAGGATGCATGATGTTGTGTTCCTGGAATTGTTAGCTGACCTATGCATACACAATATGCTCA
TGCAGGTTCCAGTCCGTGGCATACCTTCAGCAAATCTGGTGGTTTGAAGTGGTTGGGGAGCTCGATTTCTGCTTCCCTGT
TGGAACCTACAGTTTATACTTTAGGGTTCATCTTGGGAAGTTCAGCAAGCGGTTTGGACGTCGTGTTTGTAGCACCGAGC
ACGTCCACGGCTGGAACAAGAAGCCGGTGCGCTTCCAGCTCTCCACCTCAGACGGCCAGAATGCATTATCTCAATGCTAC
CTGGATGAGCCTGGGAGCTGGGTTCTGTACCATGCAGGCGATTTTGTTTCCACGAATCCCCGCCAGGCGCTGAAGCTGAA
GTTCTCGATGGCGCAGATCGACTGCACGCACACGAAAGGTGGCCTGTGTGTCGACTCGGTGCTTGTGTACCCCAAGGGCT
TTCAGCAAGAGAAGGTGGTGACCGGCAAGATCTCAGAGATGCGATCGTC------------GTAGTTGTAGTGGTGGTGC
TTGCACTGCTAGAGTTGTAGACAAACGCAGCTTGCAGCCCAATCCTATTATCAAGTTGGGCTCTGGTATGCAACGGATGA
AACGTCTGTGTAAAGAACTGTAGTCTCAGGGTCTGTGTGGTCAGCTACGTCCGAGAGTGGTTTGTGTGTCGTCCAGTCTT
CCCATGGGTAATTTTTTTTCTCTCCCTGGTGCTAAATGAGACTTTGAAGCTGCGGATGAAAC-GGTTGTGTTGAAACGAG
ATCAGAGATTTTGTTTCCAATTTCCTAGTTTGTGTTCCTTGTCAGAAACTTCTGTTTTCTTGCTGCTGTTACC-------
----------CTACTCTCAATTCTGACTTGATTGTGTTGTTGGACTGGCCATGTTTCTTTGTCCAGTCAGATTTCTGAGC
ATAACTGCAAAATGCTACGTCTACTAATTGCATGACTG--------------------GCCAGTTCCCAT--TAGGACAG
GCAGATTGCAAGTGTACATGATTAAGTAAGTATCGCGTGAAGGCAATAATACATGTCGCTGCCGCTCGATCCGTCTGGAA
GGTTTCCCCATCCTTTTCAAGA-TGAATAAATAAGGTCTCGCCAAATTGGCATGCATGGCTTTGTTCCGGTGTCTACACT
ATATTCGGCTGTCACATGCCCCTTGCAACTTTAGAGTTGTTGATTCT--------------CTCTTCTCTCTTTCATCGT
CACCGCCACGATGTTCGTCGTTTGTTCACGCTCATCACCACGACCTTTCATTGTTTTTTTATACATGAAAAGCATCTCCT
TTTCGTATTTTTT--CCTGAGGAATCAACGGTGCGGGGTCGCTTTCCCGGGTTA-GATACGCAGAGGC---------ACT
GGTGGAGACGCCAGTTT----TCTATCTCATCTCACGGATGCGATCACACAC------CAATCTCGCATGGTTGACGTAG
CTAATTCTTCTCTCTT-CACCCGATTTCTCCATGGAAACATTTGAATATGGCTTGTGCTTTTCGTCAGACCTGTGGCCTG
GGACGATGCTGCGCGCATGCGCT
>chr1A_1
ACCCCGTGACCCAAGAATTTATTTTAATTTAATTC-ATAATACTCCTGTACTACGTTCTAAATTTAGGAAACAGAAAAGG
AAATCCGTGTGCGACATGCCGGGCATCAACACTCCCGCCTAGTCCCAGTTTAGTTCCGTGCCGTGGCAACGCGGTCTCGC
GATTTGCGTGCTTGTG--------TGCATGCGGTGATTGAGCCGGATTTGGATAAGAATGGATAACCCCGCCAGCCTGTC
CGCGCGAGCCCCTCCCGTGGAAGTCTCCAGGCGCGACGGGGCTGCTTCCCTCCCTCCAGCTGTACCCCACTC-------C
CTGCACCCACCGCACGGGCCCGTACCCATGGACCGCCCTCTGGTACCCCACACCCATCATCAGCCCCGTGCAGCGGACCG
CGTCCACGGACGACGTCCCGTGCTAATGGCGGCCATTAATCCACATCATATCTAACCTGTTTAAACATTAAATCCCGAGT
GGGCCGCGCCATGGTCCCGACA-TTACGAGCGTGCCCTCCGAGATATTATCGCGGCCTTGAAGCGTCACAAACAGGTCCA
CTCGGAAGGTAAAAAAGCGTAATTACAAACCACTTTCAGGGGGCAGAAACT-----------AGAAAGGCCGCGTGAACT
GCCCATGAGACCCTATCCACGGCCCAT-TAACCGCCCCCCTTCCTCCCCCCCGCTCGCCGTCTATTTATTCCCCTCGACG
ACGCTTCCTCCGTCCTTCCGGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCGCGGGGATTCGTTTCCCAT---CTGCTGCTA
CAAAGGGTGTGCGGGGCGGGCCTCTGGGGTCGTTGCGACTGGAGGAGGCGGGGAGCCATGGGGGCGGGGGTCTCGAGCTT
TTTCTTCAGCGCGGCGGCGGAGGCTGCGCCGGGTGCTGCGGGCCTGGGCGACCTGCCGGAGCTCTGCGCCGCGCAGGTGC
TGCTGCGGCTCGACGCGCCGGAGATCTGCCGCCTCGCGCGCCTCAACCACGCCTTCCGCGGCGCCGCGGGGGCCGACTTC
GTGTGGGAGGCCAAGCTGCCGGAGAACTACCGCCACCTCATCGGGTACGTCGAGGGCGGGGGCGAGGAGGGCAGGCGCCG
GCGCCGCCGGGCCGGGACCAAGGAGATCTACGCCAGGCTCTCCAGGCCCGTCTCTTTCGACGACGGCACCAAGGTCAGAT
ATTCTTCCACAGG-AATATAGGTCCCTTTCCGTGTGA------------TTTTTTCCCAAGCCAAACAGGACCCTCTCAT
GAGCTTGTCTATGATTTTAACCAGTTAGTCTTGTGCTTGAATCATTGTTATTTTCCGAGTCTGATGTCTTAATCCACATC
TGTTTATACTAGCCAAATATTGATATCTTAATCGTTCCAGAGTTAATTAGTGTTAAGGGAAAGAACT-ATGTACAGTATT
TTTTTTTATACCGTAGCAAATAGTAT------GTACGTTTTCTTTTCTGAAAAGACGTCTAAAATTGGAGCCTGAATAGC
TGATTTAATTATTCTCTGAAATTTAA-AACAATTGCAGAACCGAAAACTCTCTTGGTTCCTTTTTATCTGT---------
-------------CTATTTTTAGTGCTAAATGGCTTATATTTTGTGTGCTTTGTAATTGCAGGAATTTTGGCTAGAGAAG
AGCAAAGGTAGGGTTTGTATGGCGCTATCCTCCAAAGCTCTGGTCATAACTGGCATCGATGACAGGAGATATTGGACACA
CATGCCGACCACTGAATCAAGGTAAAAATTCCATCTCGCACCTACTACTACTCCGACCACAGTATTTTTTTTCAGTTTGT
GTGAGAAAGATGTGATGTTT-GAGTTGCAACTTGCAATTAAATGCCGAAACAACATACTTATTGGCGAGATTTTTTTTTT
TTTTTGAAACGAAAGGGGTTGCCCCCCTGCCCCAACTTTTTATTGAAAAAGCAAATGCAACCAAAGCACACTGTTAACAG
CTCTCGGCTCCAGCCAGAAGTAGCCGCAGCAGAATTATTACAGACGATGCAACTAAAAGTCTGAACACCCACAAGACTGA
GCTGTTCGTTGTTTGTGGTAGAAGATGGGAAATAGCACACGTCTACTTTTGCATGCTTCTTCCCCTGAGCACAAGAGGCA
TTTGAGAATTATGCTCCTGTACATTTAATACATGAAAAATTTGTCCGTTGTTCAGAACATAAACACTATTATAGG-AGTA
GATGATTAGTTTTATATAAGCTCACTCGCTTGCTGCTCTGGCAGACGCATAAATTCAACATAGAG----GAGTGATGACT
GCTTTTATCTTATCAGCGCTATCAAAAAGCTAATGTAGACGCAGTCCTTCCAAATGATGGCAGTAGAT---GTATGTACC
TACTCTGTGCCAGTGGAAGATAGTATCAGACTGTGATACCTCGAGCAAATGTTTACATCTGTGCAGTATCTTTCAATGTA
ATTATATCCTAACACAAATAGGATGCATGATGCCGTGTTCCTGGAATTGTTATCTGACCTATGCATACGCAATATGCTCA
TGCAGGTTCCAGTCCGTGGCATACCTTCAGCAAATCTGGTGGTTTGAAGTGGTTGGGGAGCTCGATTTCTGCTTCCCCGT
GGGAACCTACAGTTTATACTTCAGGGTTCATCTTGGGAAGTTCAGCAAGCGGTTTGGACGCCGTGTTTGCAGCACCGAGA
ACGTCCACGGCTGGAACAAGAAGCCGGTGCGCTTCCAGCTCTCCACCTCGGACGGCCAGAATGCATTATCTCAATGCTAC
CTGGATGAGCCCGGGAGCTGGGTTCTGTACCATGCAGGCGATTTTGTTTCCACGAATCCTGGCCAGGCACTGAAGCTGAA
GTTCTCGATGGCGCAGATCGACTGCACGCACACGAAAGGCGGCCTGTGCGTCGACTCGGTGCTTGTGTATCCCAAGGGCT
TTCAGCAAGAGAAGGTGGTGACCGGCAAGATCTCGGAGATGCGATCGTCGTCATCGTCGTCGTAGTTGTAGTGGTGGTGC
TTGCACTGCTAGAGTTGTAGAGGAACGCAGCTTGCAGCCCAATCCTATTATCAAGTTGGGCTCTGGTATGCAACGGATGA
AACGTCTGTGTAAAGAACTGTAGTCTCAGGGTCTGTGTGGTCAGCTACGTCCGAGAGTGGTTTGTGTGTCGTCCAGTCTT
CCCATGGGTAATTTTTTTTCTCTCCCTGGTGCTAAATGAGACTTTGATGCTGCGGATGAAACCGGTTGTGCTGAAATGAG
ATCAGAGGTTTTGTTTCCATTTTCCTAGTTTGTGTTACTTGTCAGAAACTTCTGTTTTCTTGCTCTGCTGTTATCCTAGT
TTCTGTGGTACTACTCTCAATTCTGACTTGATTGTGTTGTTAGACTGGCCATGTTTCTTGGTCCAGTCAGATTTCTGAGC
ATAACTGCAAAATGCTACTGCTGCTAATTGCATGACTGATCTATGTACTAAATGTTGTGCCTGTTCCCATTCTAGGACAG
GCAGATTGCAAGTGTACATGATTAAGTAAGTATCGCGTGAAGGCAATAATACATGTCGCTGCCGCTCGATCCGCCTGGAA
GGTTTCGCCAACCTTTCCAA-A-TGAATAAATAAGGTCTCGCCAAATTGGCATACATGGATTTGTTCCGGTGTCTACACT
ATATTCAGCTGTCACATGCCCCTTGCAACTTTAGAGTTGTTGATTCTCTCTCTCTCTCTCTCTCTTCTCTCTTTCATCGT
CACCGCCACGATCTTCGTCGTCTGTTCACGGTCATCACCACGACCTTTCATCATTTTTTTTATACATGAAAGCATCTCCT
TTTCGCTTTTCC--CCCCGAGGAATCAACGGTGGGGGGTCGCTTTCCCGGGTTAAGATACGCAGAGCGGCAGAGGCAACC
GGTGGAGACGCTAGTTTTCTATCTATCTCATCTCACGGATGCGATCACACACACACACCAATCTCGCATGGTTGACGTGG
CTAATTCTTCTCTCTTTCACCCGATTTCTCCATGGAAACATTTGAATATGGCTTGTGCTTTTCATCAGACCTGTGGCCTG
GGAGGATGCTGCGCGCATGCGC-
>chr1B_66
AAACCAG--------------------------------------------------------------------AAAGG
AAATCCGTGTGCGACATGCCGGGCATCGACACTCCCATCTAGTCCCAGTTTAGCTCCGTGCCGTGGCAACGCGGTCTCGC
GATTCGCGTGCGTGCG--------TGCATGCGGTAATTGAGCCGGATTTGGATAAGTATAGATAATCCCGCCAACCTGTC
CGTGCGAGCCATG-CCATGGAAGTCTCCAGGCGCGACGGGGCTGCTTCGTTCCCTCCAGCTGTACGCCACT--------C
CTGCACCCACCGCACGGGCCCGTACCCATGGACCGCCCTGGTAGCCCACAG--CCATCATCAGCCCCGTGCAGCGGACCG
CGTCCACGGACGTCCCGTGT---TAATGGCGGCAATTAATCCACATCATATCCAACCTGTTTAAACATTAAATCCCGAGT
GGGGCGCGATATGGTCCCGACATTTACGAACGTGCCCTTCGAGATATTATCGCTGGCGCGCAGCGTCACCAACAGGTCCA
TCGAGAGGT--AAAAAGCGTAATTACCGAGCACTTTCAGGGGGTAGAAACTAGAAGGAAACTAGAAAGGCAGCGTGAACT
GCCCATGAAACCCTATCCACGGCCCAT-TAACCGCCCCCCTTCCTTCCCCCGGCTCGCCGTCTATTTATTCCCTTCGGCG
ACGCTTCCTCCGTCCTTCCGGTTCGTTTATTTATTTTCCCCCCTTTCCTTCTCCAACGACGCATTGCTTTTTCCTCAAGC
GGGCG----------------AACAAATTCCCAGAGGATTCCATTCGTGCGCGGGCGGGCGTGATCGCGAGCTTCCATTA
CGGGCGCGGAATCGGGTGCTGGTCGATCGAGGAGCTCCTTCGATTCGGGGATCGGCTTCTGCGC----------------
--------------------------------------------------------------------------------
----------------------------------------------------GGGATTCGGTTCCCAT---CTGCTGCTA
CAAAGGGTGTGCGGGGCGGGCCTCTGAGGTCGTTGCGACTGGAGGAGGCAAGGAGCCATGGGGGCGGGGGTCTCGAGCTT
TTTCTTCGGCGCGGCGGCGGAGGCTGCGCCGGGTGCTGCGGGCCTGGGCGACCTGCCGGAGCTCTGCGCCGCGCAGGTGC
TGCTCCGCCTCGACGCGCCGGAGATCTGCCGACTCGCGCGCCTCAACCACGCGTTCCGCGGCGCCGCGGGGGCTGACTTC
GTGTGGGAGGCCAAGCTGCCGGAGAACTACCGCCACCTGATCGGGTACGTCGAGGGCGGGGGCGAGGAGGGCAGGCGCCG
GCGGAGGCGGGCCGGGACCAAGGAGATCTACGCCAGGCTCTCCAGGCCCGTCTCTTTCGAAGACGGCACCAAGGTCAGAT
ATTCTTCCAGAGGAAATATAGGTCCCTTTCCGTGTGCTTGTCTATGATTTTTTTTTCGTGTGCA----------CCTCAG
GGGATTGTCTATAACCAAATAGTGTC------GTGCTTGAATCATTGTTCTTTTCCGGGTCTGATGTCTG----------
-----------------------------AATCGTTACAAAGTTAATTAGTGTTAAGGGGGAGAACTCATG------TAT
GTTTTTCTTACCGTAGCAAATAGTAT------GCACGTTTTGTTTTCTGAAAATACGTCACAAATTGGGGCCTGAATGCC
TCATTTATTTTTTCTCTGAA-ATTTATAACAATTTCAGCACCGAAAACGCCCTTGGTTCCTTTTTATCTACGGC------
-------CTAGAACTATTTTTAGTGCTAAATGGCTTATATTTTGTGTGCTTTGTAATTGCAGGAATTTTGGCTAGAGAAG
AGCAAAGGTAGGGTTTGTATGGCGCTATCCTCCAAAGCTCTGGTCATAACTGGCATCGATGACAGGAGATATTGGACACA
CATGCCGACCACAGAATCGAGGTAAAAATCCGATCTCGCACTTACCACAGTATA-----------TTCTTTTCAGTTTGT
GTTAGAAAGATGTGATGTTTTGAGTTGCAACTTGCAATTAAATGCCGCAACAACATACTTAATGGTGAGAT---------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TGA
GCTGTTCGTTGTTTGTGGTAGAAGATGGGAAATAGTACACGCCTACTTCTGCATGCTTCTTCCCCTGAGCACAAGAGGCA
TTTGAGAATTATGCACCTGTCCATTTAA-ACATGAAAATTTTGTCCGCTGTTCCCAACATACACACTACTAT---TAGTG
GATGATTAGTTTTACATATGCTCATTCGCTTGCTGCTCTGGCAGACACATAAATTCAACATAGGCT----AGTGATGATT
GCTTTTATCTTATCAGCGCTATCAAAAAGCTAATGTAGACGCAGTCCTTCCAAATGATGGCAGTAGATA---TATGTACC
TACTTTGTGCCTATGGAATA---TATCAGACTGTGATACCTCAAGCAAATGTTTACATCTGTGCAGTATCTTTCAATGTA
ATTATATTCTAACACAAATAGGATGCATGATGCCGTGTTCCCGGAATTGTTATCTGACCTATGCATACGCAATATGCTCA
TGCAGGTTCCAGTCCGTGGCATACCTTCAGCAAATCTGGTGGTTTGAAGTGGTTGGGGAGCTCGATTTCTGCTTCCCTGT
GGGAACCTACAGTTTATACTTCAGGGTTCATCTTGGGAAGTTCAGCAAGCGGTTTGGACGCCGTGTTTGCAGCACCGAGC
ACGTCCACGGCTGGAACAAGAAGCCGGTGCGCTTCCAGCTCTCCACCTCGGACGGCCAGAATGCATTATCTCAATGCTAC
CTGGATGAGCCCGGGAGCTGGGTTCTGTACCATGCAGGCGATTTTGTTTCCACAAATCCCGGCCAGGCACTGAAGCTGAA
GTTCTCGATGGCGCAGATTGACTGCACGCACACGAAAGGTGGCCTGTGCGTCGACTCGGTGCTTGTGTACCCCAAGGGCT
TTCAGCAAGAGAAGGTGGTGACCGGCAAGATCTCAGAGATGCGATCGTC------------GTAGTTGTAGTGGTGGTGC
TTGCACTGCTAGAGTTGTAGACAAACGCAGCTTGTAGCCCAATCCTATTATCAAGTTGGGCTCTGGTATGCAACGGATGA
AACGTCTGTGTAAAGAACTGTAGTCTCAGGGTCTGTGTGGTCAGCTACGTCCGAGAGTGGTTTGTGTGTCGTCC------
-CCATGGGTAATTTTTTTTCTCTCCCTGGTGCTAAATGAGACTTTGATGCTACGGATGAAACCGGTTGTGTTGAAATGAG
ATCATAGGTTTTGTTTCCATGTTCCTAGTTTGTGTTCCTTGTCAGAAACTTCTGTTTTCTTG--CTGCTGTTATCCTAGT
TTCTTTGGTACTACTCTCAATTCTGACTTGATTGTGTTGTTGGACTGGCCATGTTTCTTGGTCCAGTCAGATTTCTGAGC
ATAACTGCAAAATGCTACTGCTACTAATTGTATGACTGATCTATCTACTTCATGTTGTGCCAGTTCCCATTCTAGGACAG
GCAGATTGCAAGTGTACATGATTAAGTAAGTATCGCGTGAAGGCAATAATACATGTCGCTGCCGCTCTATCCGTCTGGAA
GGTTTCTCCAACCTTTCCAA-AATGAATAAATAAGGTCTCGCCAAATTGGCATACATGGCTTTGTTCCGGTGTCTACACC
ATATTCAGCTGTCACATGCCCCTTGCAAC-TTAGAGTTGTTGATTCT--------------CTCTTCTCTCTTTCATCGT
CACCCCCACGATCTTCTTCGTTTGTTCACGGTCATCACCACGACCTTTCATTATTTTTTCATACATGAAAAGCATCTTCT
TTTCGTATTTTTTTCCCTGAGGAATCAACGGTGGGGGGTCGCTGTCCCGGGTTA-GATACGCAGAGGC---------ACT
GGTGGAGACGCTAGTTT----TCTATCTCATCTCACGGATGCGATCACACACAC----CAATCTCGCATGGTTGACGTAG
CTACTTCTTCTCTCTTTCACCCGATTTCTCCATGGAAACATTTGAATATGGCTTGTGCTTTTCATCAGACCTGTGGCCTG
GGACGATGCTGCGCGCATGCGC-
>SNPs
---------------------S----------S--S------S-S------SSSSS------------------------
---S---S------------------------------------------------S-S---------------------
----------------SSSSSSSS--------------------------------------------------------
------------------------------------------------------------------------SSSSSSS-
-----------------------SS-------------------------------------------------------
---------------------------------S----------------------------------S----S------
-----------S-----------------------------------------S--------------------------
-----S--------------------------------------------------------------------------
---------------------------S------S-----------------------------------------S---
-S-------S-------------------------SS------S------------------------------------
-----SSSSSSSSSSSSSSSS-----------S----------------------S-----------------------S
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------SSS---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------S-----------
-----------------------------S---------------------------------S----------------
----S-----------------------S--------------------S------------S---S-------SSS---
---------------------SS--SSSSSSS--------S------------S--------------------------
----------------------------------S--------------------S---------------SSSSSSSSS
SSSSSSS-------------------------------------------------------------------------
-----S-----------S--------------------------------------------------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S-------------------------------------------------------------
---------------------------------------------------------------------SS--SS-----
------S--------S--S---S-----------------------------------------SSSSS-----------
--------------------------------------------------------------------SSS---------
-------------------------------------------------------------S------------------
--------------------------------SS------------------S---------------S-----------
--------------------------------------------------------------------------------
S--------------------S--------------------------------------S--------S----------
-------------------------------------------------S------------------------------
-----------S------------------------------------------------S-------S-----------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S----------------------------S---
-------S-----------S--------------------------------------------SSSS-SSSS-------
-----------------------------------------------------------S--------------------
------------------SS------------------------------------------------------------
--------------------------------------------------------------------------------
------S---S-----S---S--------------------------------S--------------------------
------S-------------------------------------------------------------------------
------------S-----------------S---------------------S---------------------------
---------------------------------S----------------------------------------------
-----------S--------------------------------------------------------------------
---------------------------------------------------------------S----------------
----------------------S
>forward_880
--------------------------------------------------------------------------------
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------------------------------------------------------------GTGATCGCGAGCTTCCATTG
--------------------------------------------------------------------------------
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-----------------------
>reverse_3021
--------------------------------------------------------------------------------
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------------------------------------------------------------TCGTGTTTGTAGCACCGAGC
--------------------------------------------------------------------------------
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-----------------------
>forward_2018
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------AG
AGCAAGGGTAGGGTTTGC--------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------
>reverse_4093
--------------------------------------------------------------------------------
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------------GTTCGTCGTTTGTTCACGCT------------------------------------------------
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