Multiple sequence alignment - TraesCS1D01G177300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G177300 chr1D 100.000 2804 0 0 1 2804 252489664 252486861 0.000000e+00 5179.0
1 TraesCS1D01G177300 chr1D 88.945 199 20 2 2144 2341 471759069 471759266 7.760000e-61 244.0
2 TraesCS1D01G177300 chr1D 95.455 44 2 0 286 329 400181482 400181525 1.390000e-08 71.3
3 TraesCS1D01G177300 chr1B 92.313 1574 81 15 447 1992 360983620 360985181 0.000000e+00 2200.0
4 TraesCS1D01G177300 chr1A 91.521 1427 62 24 612 1992 323287320 323285907 0.000000e+00 1910.0
5 TraesCS1D01G177300 chr1A 91.501 353 19 4 1 352 323288257 323287915 2.530000e-130 475.0
6 TraesCS1D01G177300 chr1A 84.615 481 42 16 2332 2804 323285852 323285396 1.530000e-122 449.0
7 TraesCS1D01G177300 chr1A 96.581 117 3 1 336 451 323287900 323287784 2.850000e-45 193.0
8 TraesCS1D01G177300 chr1A 85.507 69 7 3 257 324 516589833 516589767 5.010000e-08 69.4
9 TraesCS1D01G177300 chr6D 91.257 183 15 1 2148 2330 112815733 112815914 6.000000e-62 248.0
10 TraesCS1D01G177300 chr6D 91.257 183 15 1 2148 2330 348607389 348607208 6.000000e-62 248.0
11 TraesCS1D01G177300 chr2D 91.257 183 15 1 2148 2330 414295295 414295114 6.000000e-62 248.0
12 TraesCS1D01G177300 chr2D 89.744 195 16 4 2137 2330 532608012 532608203 2.160000e-61 246.0
13 TraesCS1D01G177300 chr2D 90.426 188 14 4 2149 2334 631194446 631194261 7.760000e-61 244.0
14 TraesCS1D01G177300 chr2D 87.719 114 11 3 1993 2104 312065114 312065002 2.270000e-26 130.0
15 TraesCS1D01G177300 chr2D 95.556 45 2 0 285 329 29153226 29153270 3.870000e-09 73.1
16 TraesCS1D01G177300 chrUn 89.744 195 16 4 2137 2330 235136028 235136219 2.160000e-61 246.0
17 TraesCS1D01G177300 chrUn 89.744 195 16 4 2137 2330 395778295 395778486 2.160000e-61 246.0
18 TraesCS1D01G177300 chrUn 82.270 141 21 3 2652 2788 68460644 68460504 4.910000e-23 119.0
19 TraesCS1D01G177300 chr7D 88.500 200 20 3 2144 2342 181008230 181008033 3.610000e-59 239.0
20 TraesCS1D01G177300 chr7D 90.909 55 5 0 2009 2063 215796849 215796795 1.080000e-09 75.0
21 TraesCS1D01G177300 chr2A 88.652 141 11 4 2652 2788 488003574 488003435 1.730000e-37 167.0
22 TraesCS1D01G177300 chr3A 87.943 141 12 4 2652 2788 108032138 108031999 8.040000e-36 161.0
23 TraesCS1D01G177300 chr3A 84.146 82 8 4 2008 2086 537734743 537734664 1.080000e-09 75.0
24 TraesCS1D01G177300 chr5A 85.000 140 19 2 2652 2789 578942107 578941968 1.050000e-29 141.0
25 TraesCS1D01G177300 chr5B 83.453 139 21 2 2652 2788 440552122 440551984 8.150000e-26 128.0
26 TraesCS1D01G177300 chr5B 83.453 139 21 2 2652 2788 440562931 440562793 8.150000e-26 128.0
27 TraesCS1D01G177300 chr5B 88.889 72 7 1 257 327 383528751 383528680 1.380000e-13 87.9
28 TraesCS1D01G177300 chr4D 88.235 102 7 5 1987 2086 481414051 481414149 1.760000e-22 117.0
29 TraesCS1D01G177300 chr3B 85.185 108 13 3 1999 2104 613641334 613641228 1.060000e-19 108.0
30 TraesCS1D01G177300 chr5D 83.696 92 9 5 2702 2789 396235169 396235258 6.440000e-12 82.4
31 TraesCS1D01G177300 chr5D 95.455 44 2 0 284 327 538684810 538684767 1.390000e-08 71.3
32 TraesCS1D01G177300 chr4A 86.486 74 4 4 262 332 692923508 692923438 3.000000e-10 76.8
33 TraesCS1D01G177300 chr4A 93.617 47 3 0 285 331 407215230 407215276 1.390000e-08 71.3
34 TraesCS1D01G177300 chr4A 95.455 44 2 0 285 328 473693210 473693167 1.390000e-08 71.3
35 TraesCS1D01G177300 chr7A 83.333 72 8 2 257 327 61434531 61434599 2.330000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G177300 chr1D 252486861 252489664 2803 True 5179.00 5179 100.0000 1 2804 1 chr1D.!!$R1 2803
1 TraesCS1D01G177300 chr1B 360983620 360985181 1561 False 2200.00 2200 92.3130 447 1992 1 chr1B.!!$F1 1545
2 TraesCS1D01G177300 chr1A 323285396 323288257 2861 True 756.75 1910 91.0545 1 2804 4 chr1A.!!$R2 2803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 1367 0.107654 CTTGTCCCCTCGATTCCACC 60.108 60.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 2615 0.037734 TCGACTGAGCCCTAGACACA 59.962 55.0 0.0 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.000486 TCTCGCCCTTGCTCTACCT 60.000 57.895 0.00 0.00 34.43 3.08
47 48 2.484287 ATTGGTTGGGGTGCTCCTCG 62.484 60.000 4.53 0.00 36.91 4.63
63 64 2.564504 TCCTCGGCTGATCCATATTCAG 59.435 50.000 0.00 0.00 42.83 3.02
134 135 8.664211 GCTTAAAATAAGCACATAGGACTAGT 57.336 34.615 15.31 0.00 42.56 2.57
208 209 1.673033 CGAGCCGGAATGTCTCAGTTT 60.673 52.381 5.05 0.00 0.00 2.66
209 210 2.427506 GAGCCGGAATGTCTCAGTTTT 58.572 47.619 5.05 0.00 0.00 2.43
210 211 2.814336 GAGCCGGAATGTCTCAGTTTTT 59.186 45.455 5.05 0.00 0.00 1.94
259 260 7.994194 ACATTTTCTAGAATGAGAAATGCTCC 58.006 34.615 19.71 0.00 43.27 4.70
269 270 5.241403 TGAGAAATGCTCCCTCTGTAAAA 57.759 39.130 0.00 0.00 43.26 1.52
270 271 5.819991 TGAGAAATGCTCCCTCTGTAAAAT 58.180 37.500 0.00 0.00 43.26 1.82
302 304 8.784043 AGAGCGTTTTTATTGATCTAAACACTT 58.216 29.630 0.00 0.00 32.28 3.16
397 430 9.612620 AAAAGCTTCTTACATTTTGATACGAAG 57.387 29.630 0.00 0.00 0.00 3.79
460 493 5.772521 TCTCAAAAAGAAAAGCACATAGGC 58.227 37.500 0.00 0.00 0.00 3.93
461 494 6.040842 TTCTCAAAAAGAAAAGCACATAGGCT 59.959 34.615 0.00 0.00 41.71 4.58
495 532 2.954611 GCAGGTTCTGGTTTCGGC 59.045 61.111 0.00 0.00 31.21 5.54
515 552 0.875059 CGTCAAAACAGAGGCCCTTC 59.125 55.000 0.00 0.00 0.00 3.46
530 570 2.440409 CCCTTCAACCTGGAATGTCTG 58.560 52.381 0.00 0.00 0.00 3.51
575 615 0.472471 TTGACAGTTCACTCCCACCC 59.528 55.000 0.00 0.00 0.00 4.61
601 641 0.813184 TCGTACGGATCTTGGTGACC 59.187 55.000 16.52 0.00 0.00 4.02
603 643 0.899720 GTACGGATCTTGGTGACCCA 59.100 55.000 0.00 0.00 39.65 4.51
659 1065 3.317711 TGAACCAATCTTGTCAACGCAAT 59.682 39.130 0.00 0.00 0.00 3.56
679 1085 5.107298 GCAATCCTACTTCACGAGAATATGC 60.107 44.000 0.00 0.00 32.31 3.14
704 1111 4.148230 CGTCCAGAGTACGTGTGC 57.852 61.111 0.00 0.00 35.66 4.57
757 1164 1.402984 GCAGAGTCAAGTCCGGTGTAG 60.403 57.143 0.00 0.00 0.00 2.74
758 1165 1.202582 CAGAGTCAAGTCCGGTGTAGG 59.797 57.143 0.00 0.00 0.00 3.18
759 1166 1.075050 AGAGTCAAGTCCGGTGTAGGA 59.925 52.381 0.00 0.00 38.11 2.94
760 1167 1.473278 GAGTCAAGTCCGGTGTAGGAG 59.527 57.143 0.00 0.00 41.68 3.69
761 1168 1.203025 AGTCAAGTCCGGTGTAGGAGT 60.203 52.381 0.00 0.00 45.39 3.85
762 1169 2.040813 AGTCAAGTCCGGTGTAGGAGTA 59.959 50.000 0.00 0.00 42.82 2.59
763 1170 3.022406 GTCAAGTCCGGTGTAGGAGTAT 58.978 50.000 0.00 0.00 42.82 2.12
797 1211 0.247185 TACGGAGTAGTTTTGCCCCG 59.753 55.000 0.00 0.00 45.11 5.73
949 1367 0.107654 CTTGTCCCCTCGATTCCACC 60.108 60.000 0.00 0.00 0.00 4.61
997 1423 0.458543 AACCGCTGCTGATACTCGTG 60.459 55.000 0.00 0.00 0.00 4.35
1427 1859 1.375268 GCGCAGAGAAGGAGCTGTT 60.375 57.895 0.30 0.00 34.66 3.16
1573 2005 0.320683 CATCTTCCTGTGGTGTGCGA 60.321 55.000 0.00 0.00 0.00 5.10
1603 2035 1.585521 GACGTATCGGCAGTGGTCG 60.586 63.158 0.00 0.00 45.31 4.79
1613 2045 4.039357 AGTGGTCGAGACGGTGCG 62.039 66.667 0.00 0.00 0.00 5.34
1731 2172 1.140589 CATTGGCGAGCTCGAGAGT 59.859 57.895 38.74 17.68 43.02 3.24
1755 2196 3.193056 GGAGCGAGAAGGTGTTTAGTAGT 59.807 47.826 0.00 0.00 0.00 2.73
1765 2206 4.833380 AGGTGTTTAGTAGTCTGCTTCAGA 59.167 41.667 0.00 0.00 38.25 3.27
1811 2252 6.354130 TCCATAATACCTTGTAGCCAAAGAC 58.646 40.000 0.00 0.00 0.00 3.01
1813 2254 7.346175 TCCATAATACCTTGTAGCCAAAGACTA 59.654 37.037 0.00 0.00 0.00 2.59
1814 2255 7.657761 CCATAATACCTTGTAGCCAAAGACTAG 59.342 40.741 0.00 0.00 0.00 2.57
1832 2282 6.876155 AGACTAGAGTGAATCTGTACGTAGA 58.124 40.000 0.00 0.00 39.20 2.59
1849 2299 3.987868 CGTAGAGTTGCACAGTGTTACAT 59.012 43.478 1.61 0.00 0.00 2.29
1897 2360 4.824289 CTTGCTGCACAATTATTTCCCTT 58.176 39.130 0.00 0.00 37.72 3.95
1898 2361 4.454728 TGCTGCACAATTATTTCCCTTC 57.545 40.909 0.00 0.00 0.00 3.46
1899 2362 3.831333 TGCTGCACAATTATTTCCCTTCA 59.169 39.130 0.00 0.00 0.00 3.02
1900 2363 4.282957 TGCTGCACAATTATTTCCCTTCAA 59.717 37.500 0.00 0.00 0.00 2.69
1901 2364 4.627035 GCTGCACAATTATTTCCCTTCAAC 59.373 41.667 0.00 0.00 0.00 3.18
1902 2365 5.567423 GCTGCACAATTATTTCCCTTCAACT 60.567 40.000 0.00 0.00 0.00 3.16
1970 2434 3.119101 ACGATGGCTCAGAAAGAACGTAT 60.119 43.478 0.00 0.00 0.00 3.06
1975 2439 5.592054 TGGCTCAGAAAGAACGTATGATAG 58.408 41.667 0.00 0.00 0.00 2.08
1979 2443 6.145338 TCAGAAAGAACGTATGATAGGGAC 57.855 41.667 0.00 0.00 0.00 4.46
1984 2448 6.388435 AAGAACGTATGATAGGGACACTAC 57.612 41.667 0.00 0.00 33.70 2.73
1986 2450 6.127793 AGAACGTATGATAGGGACACTACTT 58.872 40.000 0.00 0.00 33.70 2.24
1987 2451 6.606395 AGAACGTATGATAGGGACACTACTTT 59.394 38.462 0.00 0.00 33.70 2.66
1988 2452 6.786967 ACGTATGATAGGGACACTACTTTT 57.213 37.500 0.00 0.00 33.70 2.27
1989 2453 7.886629 ACGTATGATAGGGACACTACTTTTA 57.113 36.000 0.00 0.00 33.70 1.52
1990 2454 8.474710 ACGTATGATAGGGACACTACTTTTAT 57.525 34.615 0.00 0.00 33.70 1.40
1991 2455 8.921205 ACGTATGATAGGGACACTACTTTTATT 58.079 33.333 0.00 0.00 33.70 1.40
1992 2456 9.408069 CGTATGATAGGGACACTACTTTTATTC 57.592 37.037 0.00 0.00 33.70 1.75
1993 2457 9.708092 GTATGATAGGGACACTACTTTTATTCC 57.292 37.037 0.00 0.00 33.70 3.01
1994 2458 7.133133 TGATAGGGACACTACTTTTATTCCC 57.867 40.000 0.00 0.00 42.81 3.97
1995 2459 6.674861 TGATAGGGACACTACTTTTATTCCCA 59.325 38.462 7.21 0.00 44.63 4.37
1996 2460 5.853572 AGGGACACTACTTTTATTCCCAA 57.146 39.130 7.21 0.00 44.63 4.12
1997 2461 6.208840 AGGGACACTACTTTTATTCCCAAA 57.791 37.500 7.21 0.00 44.63 3.28
1998 2462 6.800890 AGGGACACTACTTTTATTCCCAAAT 58.199 36.000 7.21 0.00 44.63 2.32
1999 2463 6.663523 AGGGACACTACTTTTATTCCCAAATG 59.336 38.462 7.21 0.00 44.63 2.32
2000 2464 6.661805 GGGACACTACTTTTATTCCCAAATGA 59.338 38.462 0.00 0.00 42.16 2.57
2001 2465 7.342026 GGGACACTACTTTTATTCCCAAATGAT 59.658 37.037 0.00 0.00 42.16 2.45
2002 2466 9.403583 GGACACTACTTTTATTCCCAAATGATA 57.596 33.333 0.00 0.00 0.00 2.15
2004 2468 8.903820 ACACTACTTTTATTCCCAAATGATAGC 58.096 33.333 0.00 0.00 0.00 2.97
2005 2469 8.070171 CACTACTTTTATTCCCAAATGATAGCG 58.930 37.037 0.00 0.00 0.00 4.26
2006 2470 5.831997 ACTTTTATTCCCAAATGATAGCGC 58.168 37.500 0.00 0.00 0.00 5.92
2007 2471 4.846779 TTTATTCCCAAATGATAGCGCC 57.153 40.909 2.29 0.00 0.00 6.53
2008 2472 2.363306 ATTCCCAAATGATAGCGCCA 57.637 45.000 2.29 0.00 0.00 5.69
2009 2473 1.388547 TTCCCAAATGATAGCGCCAC 58.611 50.000 2.29 0.00 0.00 5.01
2010 2474 0.254462 TCCCAAATGATAGCGCCACA 59.746 50.000 2.29 1.87 0.00 4.17
2011 2475 1.133823 TCCCAAATGATAGCGCCACAT 60.134 47.619 2.29 4.61 0.00 3.21
2012 2476 1.001048 CCCAAATGATAGCGCCACATG 60.001 52.381 2.29 0.00 0.00 3.21
2013 2477 1.677576 CCAAATGATAGCGCCACATGT 59.322 47.619 2.29 0.00 0.00 3.21
2014 2478 2.542205 CCAAATGATAGCGCCACATGTG 60.542 50.000 19.31 19.31 0.00 3.21
2015 2479 2.042686 AATGATAGCGCCACATGTGT 57.957 45.000 23.79 8.43 0.00 3.72
2016 2480 1.302366 ATGATAGCGCCACATGTGTG 58.698 50.000 23.79 16.56 45.23 3.82
2025 2489 1.081906 CACATGTGTGGCACGAAGC 60.082 57.895 18.03 3.88 42.10 3.86
2039 2503 3.107017 GAAGCAATTTCGCCCACAC 57.893 52.632 0.00 0.00 0.00 3.82
2040 2504 0.729140 GAAGCAATTTCGCCCACACG 60.729 55.000 0.00 0.00 0.00 4.49
2041 2505 1.452145 AAGCAATTTCGCCCACACGT 61.452 50.000 0.00 0.00 0.00 4.49
2042 2506 1.007849 GCAATTTCGCCCACACGTT 60.008 52.632 0.00 0.00 0.00 3.99
2043 2507 0.596341 GCAATTTCGCCCACACGTTT 60.596 50.000 0.00 0.00 0.00 3.60
2044 2508 1.846541 CAATTTCGCCCACACGTTTT 58.153 45.000 0.00 0.00 0.00 2.43
2045 2509 2.197577 CAATTTCGCCCACACGTTTTT 58.802 42.857 0.00 0.00 0.00 1.94
2070 2534 9.607988 TTTGATGACAACTTTAGTTACAAGAGA 57.392 29.630 0.00 0.00 36.32 3.10
2071 2535 9.607988 TTGATGACAACTTTAGTTACAAGAGAA 57.392 29.630 0.00 0.00 36.32 2.87
2072 2536 9.778741 TGATGACAACTTTAGTTACAAGAGAAT 57.221 29.630 0.00 0.00 36.32 2.40
2074 2538 8.378172 TGACAACTTTAGTTACAAGAGAATGG 57.622 34.615 0.00 0.00 36.32 3.16
2075 2539 7.041372 TGACAACTTTAGTTACAAGAGAATGGC 60.041 37.037 0.00 0.00 36.32 4.40
2076 2540 6.770785 ACAACTTTAGTTACAAGAGAATGGCA 59.229 34.615 0.00 0.00 36.32 4.92
2077 2541 7.284489 ACAACTTTAGTTACAAGAGAATGGCAA 59.716 33.333 0.00 0.00 36.32 4.52
2078 2542 7.203255 ACTTTAGTTACAAGAGAATGGCAAC 57.797 36.000 0.00 0.00 0.00 4.17
2088 2552 4.677182 AGAGAATGGCAACTTTATTGGGT 58.323 39.130 0.00 0.00 33.47 4.51
2093 2557 6.667414 AGAATGGCAACTTTATTGGGTAATCA 59.333 34.615 0.00 0.00 33.47 2.57
2156 2620 9.787435 TTCCATTATTAACATATAGGGTGTGTC 57.213 33.333 0.00 0.00 30.07 3.67
2157 2621 9.166222 TCCATTATTAACATATAGGGTGTGTCT 57.834 33.333 0.00 0.00 30.07 3.41
2161 2625 6.989155 TTAACATATAGGGTGTGTCTAGGG 57.011 41.667 0.00 0.00 30.07 3.53
2162 2626 3.240302 ACATATAGGGTGTGTCTAGGGC 58.760 50.000 0.00 0.00 0.00 5.19
2163 2627 3.116707 ACATATAGGGTGTGTCTAGGGCT 60.117 47.826 0.00 0.00 0.00 5.19
2164 2628 2.089600 ATAGGGTGTGTCTAGGGCTC 57.910 55.000 0.00 0.00 0.00 4.70
2165 2629 0.708209 TAGGGTGTGTCTAGGGCTCA 59.292 55.000 0.00 0.00 0.00 4.26
2166 2630 0.616111 AGGGTGTGTCTAGGGCTCAG 60.616 60.000 0.00 0.00 0.00 3.35
2167 2631 0.905337 GGGTGTGTCTAGGGCTCAGT 60.905 60.000 0.00 0.00 0.00 3.41
2168 2632 0.533032 GGTGTGTCTAGGGCTCAGTC 59.467 60.000 0.00 0.00 0.00 3.51
2169 2633 0.171455 GTGTGTCTAGGGCTCAGTCG 59.829 60.000 0.00 0.00 0.00 4.18
2170 2634 0.037734 TGTGTCTAGGGCTCAGTCGA 59.962 55.000 0.00 0.00 0.00 4.20
2171 2635 0.452585 GTGTCTAGGGCTCAGTCGAC 59.547 60.000 7.70 7.70 0.00 4.20
2172 2636 0.328592 TGTCTAGGGCTCAGTCGACT 59.671 55.000 13.58 13.58 0.00 4.18
2173 2637 0.736053 GTCTAGGGCTCAGTCGACTG 59.264 60.000 34.76 34.76 45.08 3.51
2199 2663 6.867662 ACTTAACCAAGTCTCAATCAAGTG 57.132 37.500 0.00 0.00 41.25 3.16
2200 2664 6.591935 ACTTAACCAAGTCTCAATCAAGTGA 58.408 36.000 0.00 0.00 41.25 3.41
2201 2665 7.227156 ACTTAACCAAGTCTCAATCAAGTGAT 58.773 34.615 0.00 0.00 41.25 3.06
2202 2666 8.375506 ACTTAACCAAGTCTCAATCAAGTGATA 58.624 33.333 0.00 0.00 41.25 2.15
2203 2667 9.388506 CTTAACCAAGTCTCAATCAAGTGATAT 57.611 33.333 0.00 0.00 33.73 1.63
2205 2669 8.954950 AACCAAGTCTCAATCAAGTGATATAG 57.045 34.615 0.00 0.00 33.73 1.31
2206 2670 8.083828 ACCAAGTCTCAATCAAGTGATATAGT 57.916 34.615 0.00 0.00 33.73 2.12
2207 2671 9.201989 ACCAAGTCTCAATCAAGTGATATAGTA 57.798 33.333 0.00 0.00 33.73 1.82
2250 2714 8.433585 AAAAACTGAAAAGAAAATTTTGTGCG 57.566 26.923 8.47 0.00 0.00 5.34
2251 2715 6.959671 AACTGAAAAGAAAATTTTGTGCGA 57.040 29.167 8.47 0.00 0.00 5.10
2252 2716 6.959671 ACTGAAAAGAAAATTTTGTGCGAA 57.040 29.167 8.47 0.00 0.00 4.70
2253 2717 7.538303 ACTGAAAAGAAAATTTTGTGCGAAT 57.462 28.000 8.47 0.00 0.00 3.34
2254 2718 7.621102 ACTGAAAAGAAAATTTTGTGCGAATC 58.379 30.769 8.47 0.92 0.00 2.52
2255 2719 7.492344 ACTGAAAAGAAAATTTTGTGCGAATCT 59.508 29.630 8.47 0.00 0.00 2.40
2256 2720 7.840489 TGAAAAGAAAATTTTGTGCGAATCTC 58.160 30.769 8.47 0.00 0.00 2.75
2257 2721 6.769608 AAAGAAAATTTTGTGCGAATCTCC 57.230 33.333 8.47 0.00 0.00 3.71
2258 2722 5.452078 AGAAAATTTTGTGCGAATCTCCA 57.548 34.783 8.47 0.00 0.00 3.86
2259 2723 6.029346 AGAAAATTTTGTGCGAATCTCCAT 57.971 33.333 8.47 0.00 0.00 3.41
2260 2724 5.865552 AGAAAATTTTGTGCGAATCTCCATG 59.134 36.000 8.47 0.00 0.00 3.66
2261 2725 2.634982 TTTTGTGCGAATCTCCATGC 57.365 45.000 0.00 0.00 0.00 4.06
2262 2726 1.532523 TTTGTGCGAATCTCCATGCA 58.467 45.000 0.00 0.00 34.44 3.96
2263 2727 1.532523 TTGTGCGAATCTCCATGCAA 58.467 45.000 0.00 0.00 39.34 4.08
2264 2728 1.089112 TGTGCGAATCTCCATGCAAG 58.911 50.000 0.00 0.00 39.34 4.01
2265 2729 1.338960 TGTGCGAATCTCCATGCAAGA 60.339 47.619 0.00 0.00 39.34 3.02
2266 2730 1.945394 GTGCGAATCTCCATGCAAGAT 59.055 47.619 0.00 0.00 39.34 2.40
2267 2731 2.032204 GTGCGAATCTCCATGCAAGATC 60.032 50.000 8.72 0.00 39.34 2.75
2268 2732 2.216046 GCGAATCTCCATGCAAGATCA 58.784 47.619 8.72 0.00 32.29 2.92
2269 2733 2.615447 GCGAATCTCCATGCAAGATCAA 59.385 45.455 8.72 0.00 32.29 2.57
2270 2734 3.065786 GCGAATCTCCATGCAAGATCAAA 59.934 43.478 8.72 0.00 32.29 2.69
2271 2735 4.439153 GCGAATCTCCATGCAAGATCAAAA 60.439 41.667 8.72 0.00 32.29 2.44
2272 2736 5.271625 CGAATCTCCATGCAAGATCAAAAG 58.728 41.667 8.72 0.00 32.29 2.27
2273 2737 5.065602 CGAATCTCCATGCAAGATCAAAAGA 59.934 40.000 8.72 0.00 32.29 2.52
2274 2738 6.403964 CGAATCTCCATGCAAGATCAAAAGAA 60.404 38.462 8.72 0.00 32.29 2.52
2275 2739 7.419711 AATCTCCATGCAAGATCAAAAGAAT 57.580 32.000 8.72 0.00 32.29 2.40
2276 2740 8.529424 AATCTCCATGCAAGATCAAAAGAATA 57.471 30.769 8.72 0.00 32.29 1.75
2277 2741 8.707796 ATCTCCATGCAAGATCAAAAGAATAT 57.292 30.769 0.00 0.00 0.00 1.28
2278 2742 9.803507 ATCTCCATGCAAGATCAAAAGAATATA 57.196 29.630 0.00 0.00 0.00 0.86
2279 2743 9.281371 TCTCCATGCAAGATCAAAAGAATATAG 57.719 33.333 0.00 0.00 0.00 1.31
2280 2744 7.879070 TCCATGCAAGATCAAAAGAATATAGC 58.121 34.615 0.00 0.00 0.00 2.97
2281 2745 7.503230 TCCATGCAAGATCAAAAGAATATAGCA 59.497 33.333 0.00 0.00 0.00 3.49
2282 2746 8.304596 CCATGCAAGATCAAAAGAATATAGCAT 58.695 33.333 0.00 0.00 38.23 3.79
2283 2747 9.343103 CATGCAAGATCAAAAGAATATAGCATC 57.657 33.333 0.00 0.00 35.86 3.91
2284 2748 7.578852 TGCAAGATCAAAAGAATATAGCATCG 58.421 34.615 0.00 0.00 0.00 3.84
2285 2749 7.442062 TGCAAGATCAAAAGAATATAGCATCGA 59.558 33.333 0.00 0.00 0.00 3.59
2286 2750 7.743838 GCAAGATCAAAAGAATATAGCATCGAC 59.256 37.037 0.00 0.00 0.00 4.20
2287 2751 8.768019 CAAGATCAAAAGAATATAGCATCGACA 58.232 33.333 0.00 0.00 0.00 4.35
2288 2752 8.531622 AGATCAAAAGAATATAGCATCGACAG 57.468 34.615 0.00 0.00 0.00 3.51
2289 2753 8.363390 AGATCAAAAGAATATAGCATCGACAGA 58.637 33.333 0.00 0.00 0.00 3.41
2290 2754 7.936950 TCAAAAGAATATAGCATCGACAGAG 57.063 36.000 0.00 0.00 0.00 3.35
2291 2755 7.716612 TCAAAAGAATATAGCATCGACAGAGA 58.283 34.615 0.00 0.00 0.00 3.10
2292 2756 7.649705 TCAAAAGAATATAGCATCGACAGAGAC 59.350 37.037 0.00 0.00 0.00 3.36
2293 2757 6.641169 AAGAATATAGCATCGACAGAGACA 57.359 37.500 0.00 0.00 0.00 3.41
2294 2758 6.832520 AGAATATAGCATCGACAGAGACAT 57.167 37.500 0.00 0.00 0.00 3.06
2295 2759 7.929941 AGAATATAGCATCGACAGAGACATA 57.070 36.000 0.00 0.00 0.00 2.29
2296 2760 8.341892 AGAATATAGCATCGACAGAGACATAA 57.658 34.615 0.00 0.00 0.00 1.90
2297 2761 8.240682 AGAATATAGCATCGACAGAGACATAAC 58.759 37.037 0.00 0.00 0.00 1.89
2298 2762 3.071786 AGCATCGACAGAGACATAACG 57.928 47.619 0.00 0.00 0.00 3.18
2299 2763 2.683362 AGCATCGACAGAGACATAACGA 59.317 45.455 0.00 0.00 0.00 3.85
2300 2764 3.128764 AGCATCGACAGAGACATAACGAA 59.871 43.478 0.00 0.00 33.77 3.85
2301 2765 3.483922 GCATCGACAGAGACATAACGAAG 59.516 47.826 0.00 0.00 33.77 3.79
2303 2767 4.337985 TCGACAGAGACATAACGAAGTC 57.662 45.455 0.00 0.00 45.00 3.01
2304 2768 3.749609 TCGACAGAGACATAACGAAGTCA 59.250 43.478 0.00 0.00 45.00 3.41
2305 2769 3.846896 CGACAGAGACATAACGAAGTCAC 59.153 47.826 0.00 0.00 45.00 3.67
2306 2770 4.612939 CGACAGAGACATAACGAAGTCACA 60.613 45.833 0.00 0.00 45.00 3.58
2307 2771 4.799678 ACAGAGACATAACGAAGTCACAG 58.200 43.478 0.00 0.00 45.00 3.66
2308 2772 4.278669 ACAGAGACATAACGAAGTCACAGT 59.721 41.667 0.00 0.00 45.00 3.55
2309 2773 4.854291 CAGAGACATAACGAAGTCACAGTC 59.146 45.833 0.00 0.00 45.00 3.51
2310 2774 3.822996 AGACATAACGAAGTCACAGTCG 58.177 45.455 0.00 0.00 45.00 4.18
2311 2775 3.501062 AGACATAACGAAGTCACAGTCGA 59.499 43.478 7.82 0.00 45.00 4.20
2312 2776 3.562505 ACATAACGAAGTCACAGTCGAC 58.437 45.455 7.70 7.70 45.00 4.20
2314 2778 2.121116 AACGAAGTCACAGTCGACTG 57.879 50.000 37.50 37.50 45.56 3.51
2315 2779 1.306148 ACGAAGTCACAGTCGACTGA 58.694 50.000 43.55 25.29 45.56 3.41
2316 2780 1.264557 ACGAAGTCACAGTCGACTGAG 59.735 52.381 43.55 36.69 45.56 3.35
2317 2781 1.400371 CGAAGTCACAGTCGACTGAGG 60.400 57.143 43.55 33.63 45.56 3.86
2318 2782 0.315568 AAGTCACAGTCGACTGAGGC 59.684 55.000 43.55 37.64 45.56 4.70
2319 2783 0.538516 AGTCACAGTCGACTGAGGCT 60.539 55.000 43.55 39.01 44.59 4.58
2320 2784 0.315568 GTCACAGTCGACTGAGGCTT 59.684 55.000 43.55 23.71 46.59 4.35
2321 2785 1.540267 GTCACAGTCGACTGAGGCTTA 59.460 52.381 43.55 22.11 46.59 3.09
2322 2786 1.813178 TCACAGTCGACTGAGGCTTAG 59.187 52.381 43.55 24.76 46.59 2.18
2323 2787 0.528470 ACAGTCGACTGAGGCTTAGC 59.472 55.000 43.55 2.63 46.59 3.09
2324 2788 0.528017 CAGTCGACTGAGGCTTAGCA 59.472 55.000 36.73 0.00 46.59 3.49
2325 2789 1.067565 CAGTCGACTGAGGCTTAGCAA 60.068 52.381 36.73 0.00 46.59 3.91
2326 2790 1.618837 AGTCGACTGAGGCTTAGCAAA 59.381 47.619 19.30 0.00 0.00 3.68
2327 2791 2.037251 AGTCGACTGAGGCTTAGCAAAA 59.963 45.455 19.30 0.00 0.00 2.44
2328 2792 2.157863 GTCGACTGAGGCTTAGCAAAAC 59.842 50.000 8.70 0.00 0.00 2.43
2329 2793 2.037251 TCGACTGAGGCTTAGCAAAACT 59.963 45.455 6.53 0.00 0.00 2.66
2330 2794 3.257375 TCGACTGAGGCTTAGCAAAACTA 59.743 43.478 6.53 0.00 0.00 2.24
2331 2795 4.081642 TCGACTGAGGCTTAGCAAAACTAT 60.082 41.667 6.53 0.00 0.00 2.12
2332 2796 5.126545 TCGACTGAGGCTTAGCAAAACTATA 59.873 40.000 6.53 0.00 0.00 1.31
2333 2797 5.810587 CGACTGAGGCTTAGCAAAACTATAA 59.189 40.000 6.53 0.00 0.00 0.98
2334 2798 6.237861 CGACTGAGGCTTAGCAAAACTATAAC 60.238 42.308 6.53 0.00 0.00 1.89
2335 2799 6.472887 ACTGAGGCTTAGCAAAACTATAACA 58.527 36.000 6.53 0.00 0.00 2.41
2336 2800 7.112779 ACTGAGGCTTAGCAAAACTATAACAT 58.887 34.615 6.53 0.00 0.00 2.71
2337 2801 8.265055 ACTGAGGCTTAGCAAAACTATAACATA 58.735 33.333 6.53 0.00 0.00 2.29
2338 2802 9.277783 CTGAGGCTTAGCAAAACTATAACATAT 57.722 33.333 6.53 0.00 0.00 1.78
2371 2835 2.440539 AAACCTCGCTCTACACACAG 57.559 50.000 0.00 0.00 0.00 3.66
2374 2838 1.599606 CCTCGCTCTACACACAGCCT 61.600 60.000 0.00 0.00 31.37 4.58
2377 2841 0.526211 CGCTCTACACACAGCCTACA 59.474 55.000 0.00 0.00 31.37 2.74
2414 2878 4.577988 TCCAAAAATGGATCGGGTTCTA 57.422 40.909 0.00 0.00 32.09 2.10
2419 2883 6.017109 CCAAAAATGGATCGGGTTCTACTATG 60.017 42.308 0.00 0.00 0.00 2.23
2433 2897 7.014038 GGGTTCTACTATGAGAGATAACGGAAA 59.986 40.741 0.00 0.00 0.00 3.13
2446 2910 8.463607 AGAGATAACGGAAAAACAAAACAAAGA 58.536 29.630 0.00 0.00 0.00 2.52
2451 2915 7.428282 ACGGAAAAACAAAACAAAGAACATT 57.572 28.000 0.00 0.00 0.00 2.71
2452 2916 8.535690 ACGGAAAAACAAAACAAAGAACATTA 57.464 26.923 0.00 0.00 0.00 1.90
2453 2917 9.157104 ACGGAAAAACAAAACAAAGAACATTAT 57.843 25.926 0.00 0.00 0.00 1.28
2460 2924 9.816354 AACAAAACAAAGAACATTATACTGCTT 57.184 25.926 0.00 0.00 0.00 3.91
2472 2936 7.282585 ACATTATACTGCTTATCTTTGAGGCA 58.717 34.615 0.00 0.00 0.00 4.75
2490 2954 3.006217 AGGCATTCAAAAGGAAGAAGTGC 59.994 43.478 0.00 0.00 39.30 4.40
2497 2961 3.297134 AAAGGAAGAAGTGCAAGGTGA 57.703 42.857 0.00 0.00 0.00 4.02
2503 2967 1.952296 AGAAGTGCAAGGTGAAGCAAG 59.048 47.619 0.00 0.00 43.20 4.01
2567 3031 3.895998 TGGCATATCTTTGGCACACATA 58.104 40.909 0.00 0.00 46.02 2.29
2568 3032 4.472496 TGGCATATCTTTGGCACACATAT 58.528 39.130 0.00 0.00 46.02 1.78
2569 3033 4.278919 TGGCATATCTTTGGCACACATATG 59.721 41.667 0.00 0.00 46.02 1.78
2570 3034 4.232221 GCATATCTTTGGCACACATATGC 58.768 43.478 19.82 19.82 44.49 3.14
2572 3036 5.566032 GCATATCTTTGGCACACATATGCAT 60.566 40.000 24.96 3.79 46.96 3.96
2573 3037 7.549256 GCATATCTTTGGCACACATATGCATG 61.549 42.308 24.96 2.43 46.96 4.06
2613 3083 2.691526 AGCCATGTGCACCTAAATGATG 59.308 45.455 15.69 9.16 44.83 3.07
2658 3128 0.887933 AGCTATTGGTTGTTTGCCGG 59.112 50.000 0.00 0.00 0.00 6.13
2659 3129 0.735978 GCTATTGGTTGTTTGCCGGC 60.736 55.000 22.73 22.73 0.00 6.13
2660 3130 0.455972 CTATTGGTTGTTTGCCGGCG 60.456 55.000 23.90 0.00 0.00 6.46
2662 3132 2.691674 ATTGGTTGTTTGCCGGCGTG 62.692 55.000 23.90 0.00 0.00 5.34
2663 3133 3.894947 GGTTGTTTGCCGGCGTGT 61.895 61.111 23.90 0.00 0.00 4.49
2664 3134 2.103340 GTTGTTTGCCGGCGTGTT 59.897 55.556 23.90 0.00 0.00 3.32
2665 3135 1.517475 GTTGTTTGCCGGCGTGTTT 60.517 52.632 23.90 0.00 0.00 2.83
2666 3136 1.079317 GTTGTTTGCCGGCGTGTTTT 61.079 50.000 23.90 0.00 0.00 2.43
2667 3137 0.389948 TTGTTTGCCGGCGTGTTTTT 60.390 45.000 23.90 0.00 0.00 1.94
2668 3138 1.078759 TGTTTGCCGGCGTGTTTTTG 61.079 50.000 23.90 0.00 0.00 2.44
2669 3139 1.079317 GTTTGCCGGCGTGTTTTTGT 61.079 50.000 23.90 0.00 0.00 2.83
2670 3140 1.078759 TTTGCCGGCGTGTTTTTGTG 61.079 50.000 23.90 0.00 0.00 3.33
2671 3141 2.103340 GCCGGCGTGTTTTTGTGT 59.897 55.556 12.58 0.00 0.00 3.72
2672 3142 1.942223 GCCGGCGTGTTTTTGTGTC 60.942 57.895 12.58 0.00 0.00 3.67
2673 3143 1.298788 CCGGCGTGTTTTTGTGTCC 60.299 57.895 6.01 0.00 0.00 4.02
2674 3144 1.652930 CGGCGTGTTTTTGTGTCCG 60.653 57.895 0.00 0.00 0.00 4.79
2675 3145 1.430228 GGCGTGTTTTTGTGTCCGT 59.570 52.632 0.00 0.00 0.00 4.69
2676 3146 0.863957 GGCGTGTTTTTGTGTCCGTG 60.864 55.000 0.00 0.00 0.00 4.94
2677 3147 1.468340 GCGTGTTTTTGTGTCCGTGC 61.468 55.000 0.00 0.00 0.00 5.34
2678 3148 0.179187 CGTGTTTTTGTGTCCGTGCA 60.179 50.000 0.00 0.00 0.00 4.57
2679 3149 1.532921 CGTGTTTTTGTGTCCGTGCAT 60.533 47.619 0.00 0.00 0.00 3.96
2680 3150 2.535331 GTGTTTTTGTGTCCGTGCATT 58.465 42.857 0.00 0.00 0.00 3.56
2681 3151 2.281234 GTGTTTTTGTGTCCGTGCATTG 59.719 45.455 0.00 0.00 0.00 2.82
2682 3152 2.164422 TGTTTTTGTGTCCGTGCATTGA 59.836 40.909 0.00 0.00 0.00 2.57
2683 3153 3.181482 TGTTTTTGTGTCCGTGCATTGAT 60.181 39.130 0.00 0.00 0.00 2.57
2684 3154 2.702898 TTTGTGTCCGTGCATTGATG 57.297 45.000 0.00 0.00 0.00 3.07
2685 3155 1.603456 TTGTGTCCGTGCATTGATGT 58.397 45.000 0.00 0.00 0.00 3.06
2686 3156 1.603456 TGTGTCCGTGCATTGATGTT 58.397 45.000 0.00 0.00 0.00 2.71
2687 3157 1.266446 TGTGTCCGTGCATTGATGTTG 59.734 47.619 0.00 0.00 0.00 3.33
2688 3158 0.880441 TGTCCGTGCATTGATGTTGG 59.120 50.000 0.00 0.00 0.00 3.77
2699 3169 4.440387 GCATTGATGTTGGATGTGTGCATA 60.440 41.667 0.00 0.00 35.07 3.14
2700 3170 5.737922 GCATTGATGTTGGATGTGTGCATAT 60.738 40.000 0.00 0.00 35.07 1.78
2702 3172 7.427214 CATTGATGTTGGATGTGTGCATATTA 58.573 34.615 0.00 0.00 35.07 0.98
2703 3173 6.622833 TGATGTTGGATGTGTGCATATTAG 57.377 37.500 0.00 0.00 35.07 1.73
2717 3187 3.193263 CATATTAGCTATGCAGAGGCCG 58.807 50.000 10.92 0.00 40.13 6.13
2758 3229 5.591472 TGTATCCTCTTGATGCTCCATTTTG 59.409 40.000 0.00 0.00 37.04 2.44
2760 3231 4.665451 TCCTCTTGATGCTCCATTTTGAA 58.335 39.130 0.00 0.00 0.00 2.69
2769 3240 8.936070 TGATGCTCCATTTTGAATCAATAAAG 57.064 30.769 0.00 0.00 0.00 1.85
2775 3247 9.565213 CTCCATTTTGAATCAATAAAGTCACTC 57.435 33.333 0.00 0.00 0.00 3.51
2797 3269 9.055248 CACTCTTTATCGAAAAATTACAAGCTG 57.945 33.333 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.179070 GTAGCAGGTAGAGCAAGGGC 60.179 60.000 0.00 0.00 41.61 5.19
47 48 5.311265 TGATGAACTGAATATGGATCAGCC 58.689 41.667 3.57 0.00 46.56 4.85
90 91 1.002468 GCAATACATCGGCCACACATC 60.002 52.381 2.24 0.00 0.00 3.06
126 127 0.752376 GCTGCCTCGGTACTAGTCCT 60.752 60.000 0.00 0.00 0.00 3.85
235 236 7.284944 AGGGAGCATTTCTCATTCTAGAAAATG 59.715 37.037 17.11 17.11 45.83 2.32
236 237 7.352738 AGGGAGCATTTCTCATTCTAGAAAAT 58.647 34.615 9.71 1.37 45.83 1.82
241 242 5.163322 ACAGAGGGAGCATTTCTCATTCTAG 60.163 44.000 0.00 0.00 43.70 2.43
242 243 4.718774 ACAGAGGGAGCATTTCTCATTCTA 59.281 41.667 0.00 0.00 43.70 2.10
255 256 7.489757 CGCTCTTATATATTTTACAGAGGGAGC 59.510 40.741 14.35 0.00 41.49 4.70
258 259 9.490379 AAACGCTCTTATATATTTTACAGAGGG 57.510 33.333 16.51 16.51 43.44 4.30
460 493 1.065928 CGGCTGGCTCCGTACTAAG 59.934 63.158 9.95 0.00 44.18 2.18
461 494 3.203442 CGGCTGGCTCCGTACTAA 58.797 61.111 9.95 0.00 44.18 2.24
474 507 1.600916 GAAACCAGAACCTGCGGCT 60.601 57.895 0.00 0.00 0.00 5.52
478 511 2.626780 GGCCGAAACCAGAACCTGC 61.627 63.158 0.00 0.00 0.00 4.85
481 514 2.281276 ACGGCCGAAACCAGAACC 60.281 61.111 35.90 0.00 0.00 3.62
483 516 0.464013 TTTGACGGCCGAAACCAGAA 60.464 50.000 35.90 12.98 0.00 3.02
484 517 0.464013 TTTTGACGGCCGAAACCAGA 60.464 50.000 35.90 15.56 0.00 3.86
485 518 0.317519 GTTTTGACGGCCGAAACCAG 60.318 55.000 35.90 0.00 41.30 4.00
495 532 0.537371 AAGGGCCTCTGTTTTGACGG 60.537 55.000 6.46 0.00 0.00 4.79
515 552 0.967380 GCCCCAGACATTCCAGGTTG 60.967 60.000 0.00 0.00 0.00 3.77
540 580 0.171231 TCAACCTCGCTCGAGTCATG 59.829 55.000 15.13 12.28 40.44 3.07
547 587 0.318699 TGAACTGTCAACCTCGCTCG 60.319 55.000 0.00 0.00 0.00 5.03
575 615 3.506455 ACCAAGATCCGTACGATGATAGG 59.494 47.826 18.76 15.25 0.00 2.57
601 641 1.400142 TGAACTGTCAACGTTGCTTGG 59.600 47.619 23.47 14.42 0.00 3.61
603 643 3.243068 GGAATGAACTGTCAACGTTGCTT 60.243 43.478 23.47 11.09 37.30 3.91
659 1065 4.645136 ACTGCATATTCTCGTGAAGTAGGA 59.355 41.667 6.07 0.00 32.42 2.94
679 1085 3.921969 CGTACTCTGGACGTAGTACTG 57.078 52.381 19.10 11.69 45.52 2.74
704 1111 1.135689 GGTACGGAACAGCTTTGCATG 60.136 52.381 0.00 0.00 0.00 4.06
757 1164 2.686915 AGTAGTGGTACGCACATACTCC 59.313 50.000 14.39 0.00 44.14 3.85
758 1165 4.551603 CGTAGTAGTGGTACGCACATACTC 60.552 50.000 18.33 13.48 44.14 2.59
759 1166 3.310774 CGTAGTAGTGGTACGCACATACT 59.689 47.826 14.39 16.92 44.14 2.12
760 1167 3.546815 CCGTAGTAGTGGTACGCACATAC 60.547 52.174 14.39 12.73 44.14 2.39
761 1168 2.613595 CCGTAGTAGTGGTACGCACATA 59.386 50.000 14.39 4.55 44.14 2.29
762 1169 1.402968 CCGTAGTAGTGGTACGCACAT 59.597 52.381 14.39 5.27 44.14 3.21
763 1170 0.804364 CCGTAGTAGTGGTACGCACA 59.196 55.000 14.39 0.00 44.14 4.57
797 1211 1.154469 GTTTTCTGTACTGCGGCGC 60.154 57.895 27.44 27.44 0.00 6.53
845 1261 1.136336 CGAAGGAAAAGCTTTCGTCCG 60.136 52.381 19.56 12.95 46.98 4.79
913 1330 4.202121 GGACAAGGACGTGAGCTTATATGA 60.202 45.833 0.00 0.00 0.00 2.15
1258 1690 4.508128 GAACCGATCGCAGGCGGA 62.508 66.667 10.32 1.09 45.71 5.54
1269 1701 4.415332 GCGAGCGTGAGGAACCGA 62.415 66.667 0.00 0.00 0.00 4.69
1573 2005 0.462789 GATACGTCCGGGGACATTGT 59.537 55.000 17.43 9.78 44.77 2.71
1603 2035 3.173240 GTTCGAGCGCACCGTCTC 61.173 66.667 11.47 0.00 0.00 3.36
1640 2072 3.781605 TTGGCCACATGCACGACCA 62.782 57.895 3.88 0.00 43.89 4.02
1665 2097 1.373497 CGTCTCTGGCAGTGACACC 60.373 63.158 35.19 18.49 38.31 4.16
1689 2130 0.255318 CCTCAAGCCTCTCCAATGCT 59.745 55.000 0.00 0.00 36.79 3.79
1692 2133 1.065854 CGTTCCTCAAGCCTCTCCAAT 60.066 52.381 0.00 0.00 0.00 3.16
1731 2172 1.275291 CTAAACACCTTCTCGCTCCCA 59.725 52.381 0.00 0.00 0.00 4.37
1755 2196 5.127693 GTGAAACTCTAGTCTGAAGCAGA 57.872 43.478 0.00 0.00 38.25 4.26
1811 2252 7.403421 CAACTCTACGTACAGATTCACTCTAG 58.597 42.308 4.75 0.00 31.13 2.43
1813 2254 5.392165 GCAACTCTACGTACAGATTCACTCT 60.392 44.000 4.75 0.00 33.14 3.24
1814 2255 4.794246 GCAACTCTACGTACAGATTCACTC 59.206 45.833 4.75 0.00 0.00 3.51
1832 2282 3.694072 ACAACATGTAACACTGTGCAACT 59.306 39.130 7.90 0.00 38.04 3.16
1849 2299 7.351981 CGTAAGTTCATGAGAATGAAACAACA 58.648 34.615 2.86 0.00 35.92 3.33
1897 2360 7.704047 CAGATCTCATCGAGTAAATGAAGTTGA 59.296 37.037 0.00 0.00 32.96 3.18
1898 2361 7.516470 GCAGATCTCATCGAGTAAATGAAGTTG 60.516 40.741 0.00 0.00 32.96 3.16
1899 2362 6.478344 GCAGATCTCATCGAGTAAATGAAGTT 59.522 38.462 0.00 0.00 32.96 2.66
1900 2363 5.982516 GCAGATCTCATCGAGTAAATGAAGT 59.017 40.000 0.00 0.00 32.96 3.01
1901 2364 6.215121 AGCAGATCTCATCGAGTAAATGAAG 58.785 40.000 0.00 0.00 32.96 3.02
1902 2365 6.040278 AGAGCAGATCTCATCGAGTAAATGAA 59.960 38.462 0.00 0.00 44.35 2.57
1970 2434 6.674861 TGGGAATAAAAGTAGTGTCCCTATCA 59.325 38.462 7.98 0.00 44.35 2.15
1975 2439 6.661805 TCATTTGGGAATAAAAGTAGTGTCCC 59.338 38.462 0.00 0.00 44.31 4.46
1979 2443 8.070171 CGCTATCATTTGGGAATAAAAGTAGTG 58.930 37.037 0.00 0.00 0.00 2.74
1984 2448 5.221224 TGGCGCTATCATTTGGGAATAAAAG 60.221 40.000 7.64 0.00 0.00 2.27
1986 2450 4.037446 GTGGCGCTATCATTTGGGAATAAA 59.963 41.667 7.64 0.00 0.00 1.40
1987 2451 3.568007 GTGGCGCTATCATTTGGGAATAA 59.432 43.478 7.64 0.00 0.00 1.40
1988 2452 3.146066 GTGGCGCTATCATTTGGGAATA 58.854 45.455 7.64 0.00 0.00 1.75
1989 2453 1.956477 GTGGCGCTATCATTTGGGAAT 59.044 47.619 7.64 0.00 0.00 3.01
1990 2454 1.340502 TGTGGCGCTATCATTTGGGAA 60.341 47.619 7.64 0.00 0.00 3.97
1991 2455 0.254462 TGTGGCGCTATCATTTGGGA 59.746 50.000 7.64 0.00 0.00 4.37
1992 2456 1.001048 CATGTGGCGCTATCATTTGGG 60.001 52.381 7.64 0.00 0.00 4.12
1993 2457 1.677576 ACATGTGGCGCTATCATTTGG 59.322 47.619 7.64 0.00 0.00 3.28
1994 2458 2.097954 ACACATGTGGCGCTATCATTTG 59.902 45.455 28.64 13.04 34.19 2.32
1995 2459 2.097954 CACACATGTGGCGCTATCATTT 59.902 45.455 28.64 0.98 42.10 2.32
1996 2460 1.672363 CACACATGTGGCGCTATCATT 59.328 47.619 28.64 1.52 42.10 2.57
1997 2461 1.302366 CACACATGTGGCGCTATCAT 58.698 50.000 28.64 5.15 42.10 2.45
1998 2462 2.766239 CACACATGTGGCGCTATCA 58.234 52.632 28.64 2.59 42.10 2.15
2007 2471 1.081906 GCTTCGTGCCACACATGTG 60.082 57.895 24.25 24.25 45.23 3.21
2008 2472 1.100463 TTGCTTCGTGCCACACATGT 61.100 50.000 0.00 0.00 42.00 3.21
2009 2473 0.241749 ATTGCTTCGTGCCACACATG 59.758 50.000 0.00 0.00 42.00 3.21
2010 2474 0.961019 AATTGCTTCGTGCCACACAT 59.039 45.000 0.00 0.00 42.00 3.21
2011 2475 0.743688 AAATTGCTTCGTGCCACACA 59.256 45.000 0.00 0.00 42.00 3.72
2012 2476 1.408422 GAAATTGCTTCGTGCCACAC 58.592 50.000 0.00 0.00 42.00 3.82
2013 2477 3.863681 GAAATTGCTTCGTGCCACA 57.136 47.368 0.00 0.00 42.00 4.17
2021 2485 0.729140 CGTGTGGGCGAAATTGCTTC 60.729 55.000 0.00 0.00 34.52 3.86
2022 2486 1.285641 CGTGTGGGCGAAATTGCTT 59.714 52.632 0.00 0.00 34.52 3.91
2023 2487 1.452145 AACGTGTGGGCGAAATTGCT 61.452 50.000 0.00 0.00 35.59 3.91
2024 2488 0.596341 AAACGTGTGGGCGAAATTGC 60.596 50.000 0.00 0.00 35.59 3.56
2025 2489 1.846541 AAAACGTGTGGGCGAAATTG 58.153 45.000 0.00 0.00 35.59 2.32
2026 2490 2.588027 AAAAACGTGTGGGCGAAATT 57.412 40.000 0.00 0.00 35.59 1.82
2044 2508 9.607988 TCTCTTGTAACTAAAGTTGTCATCAAA 57.392 29.630 5.62 0.00 38.90 2.69
2045 2509 9.607988 TTCTCTTGTAACTAAAGTTGTCATCAA 57.392 29.630 5.62 3.48 38.90 2.57
2046 2510 9.778741 ATTCTCTTGTAACTAAAGTTGTCATCA 57.221 29.630 5.62 0.00 38.90 3.07
2048 2512 9.003658 CCATTCTCTTGTAACTAAAGTTGTCAT 57.996 33.333 5.62 0.00 38.90 3.06
2049 2513 7.041372 GCCATTCTCTTGTAACTAAAGTTGTCA 60.041 37.037 5.62 2.74 38.90 3.58
2050 2514 7.041372 TGCCATTCTCTTGTAACTAAAGTTGTC 60.041 37.037 5.62 0.34 38.90 3.18
2051 2515 6.770785 TGCCATTCTCTTGTAACTAAAGTTGT 59.229 34.615 5.62 0.00 38.90 3.32
2052 2516 7.202016 TGCCATTCTCTTGTAACTAAAGTTG 57.798 36.000 5.62 0.00 38.90 3.16
2053 2517 7.502561 AGTTGCCATTCTCTTGTAACTAAAGTT 59.497 33.333 0.39 0.39 41.73 2.66
2054 2518 6.998673 AGTTGCCATTCTCTTGTAACTAAAGT 59.001 34.615 0.00 0.00 0.00 2.66
2055 2519 7.440523 AGTTGCCATTCTCTTGTAACTAAAG 57.559 36.000 0.00 0.00 0.00 1.85
2056 2520 7.817418 AAGTTGCCATTCTCTTGTAACTAAA 57.183 32.000 0.00 0.00 0.00 1.85
2057 2521 7.817418 AAAGTTGCCATTCTCTTGTAACTAA 57.183 32.000 0.00 0.00 0.00 2.24
2058 2522 9.515226 AATAAAGTTGCCATTCTCTTGTAACTA 57.485 29.630 0.00 0.00 0.00 2.24
2059 2523 8.299570 CAATAAAGTTGCCATTCTCTTGTAACT 58.700 33.333 0.00 0.00 0.00 2.24
2060 2524 7.542130 CCAATAAAGTTGCCATTCTCTTGTAAC 59.458 37.037 0.00 0.00 0.00 2.50
2061 2525 7.309744 CCCAATAAAGTTGCCATTCTCTTGTAA 60.310 37.037 0.00 0.00 0.00 2.41
2062 2526 6.152661 CCCAATAAAGTTGCCATTCTCTTGTA 59.847 38.462 0.00 0.00 0.00 2.41
2063 2527 5.047092 CCCAATAAAGTTGCCATTCTCTTGT 60.047 40.000 0.00 0.00 0.00 3.16
2064 2528 5.047092 ACCCAATAAAGTTGCCATTCTCTTG 60.047 40.000 0.00 0.00 0.00 3.02
2065 2529 5.086621 ACCCAATAAAGTTGCCATTCTCTT 58.913 37.500 0.00 0.00 0.00 2.85
2066 2530 4.677182 ACCCAATAAAGTTGCCATTCTCT 58.323 39.130 0.00 0.00 0.00 3.10
2067 2531 6.524101 TTACCCAATAAAGTTGCCATTCTC 57.476 37.500 0.00 0.00 0.00 2.87
2068 2532 6.667414 TGATTACCCAATAAAGTTGCCATTCT 59.333 34.615 0.00 0.00 0.00 2.40
2069 2533 6.872920 TGATTACCCAATAAAGTTGCCATTC 58.127 36.000 0.00 0.00 0.00 2.67
2070 2534 6.865834 TGATTACCCAATAAAGTTGCCATT 57.134 33.333 0.00 0.00 0.00 3.16
2071 2535 6.840705 AGATGATTACCCAATAAAGTTGCCAT 59.159 34.615 0.00 0.00 0.00 4.40
2072 2536 6.194235 AGATGATTACCCAATAAAGTTGCCA 58.806 36.000 0.00 0.00 0.00 4.92
2073 2537 6.321181 TGAGATGATTACCCAATAAAGTTGCC 59.679 38.462 0.00 0.00 0.00 4.52
2074 2538 7.333528 TGAGATGATTACCCAATAAAGTTGC 57.666 36.000 0.00 0.00 0.00 4.17
2148 2612 0.905337 ACTGAGCCCTAGACACACCC 60.905 60.000 0.00 0.00 0.00 4.61
2149 2613 0.533032 GACTGAGCCCTAGACACACC 59.467 60.000 0.00 0.00 0.00 4.16
2150 2614 0.171455 CGACTGAGCCCTAGACACAC 59.829 60.000 0.00 0.00 0.00 3.82
2151 2615 0.037734 TCGACTGAGCCCTAGACACA 59.962 55.000 0.00 0.00 0.00 3.72
2152 2616 0.452585 GTCGACTGAGCCCTAGACAC 59.547 60.000 8.70 0.00 0.00 3.67
2153 2617 0.328592 AGTCGACTGAGCCCTAGACA 59.671 55.000 19.30 0.00 0.00 3.41
2154 2618 0.736053 CAGTCGACTGAGCCCTAGAC 59.264 60.000 36.73 0.00 46.59 2.59
2155 2619 3.176728 CAGTCGACTGAGCCCTAGA 57.823 57.895 36.73 0.00 46.59 2.43
2163 2627 6.438740 ACTTGGTTAAGTCTCAGTCGACTGA 61.439 44.000 38.24 38.24 45.53 3.41
2164 2628 3.917329 TGGTTAAGTCTCAGTCGACTG 57.083 47.619 34.76 34.76 43.14 3.51
2165 2629 3.890147 ACTTGGTTAAGTCTCAGTCGACT 59.110 43.478 13.58 13.58 43.53 4.18
2166 2630 4.240175 ACTTGGTTAAGTCTCAGTCGAC 57.760 45.455 7.70 7.70 43.53 4.20
2176 2640 8.375506 TATCACTTGATTGAGACTTGGTTAAGT 58.624 33.333 0.00 0.00 41.41 2.24
2177 2641 7.678947 ATCACTTGATTGAGACTTGGTTAAG 57.321 36.000 0.00 0.00 39.86 1.85
2180 2644 8.543774 ACTATATCACTTGATTGAGACTTGGTT 58.456 33.333 0.00 0.00 36.05 3.67
2181 2645 8.083828 ACTATATCACTTGATTGAGACTTGGT 57.916 34.615 0.00 0.00 36.05 3.67
2225 2689 8.286097 TCGCACAAAATTTTCTTTTCAGTTTTT 58.714 25.926 0.00 0.00 0.00 1.94
2226 2690 7.801752 TCGCACAAAATTTTCTTTTCAGTTTT 58.198 26.923 0.00 0.00 0.00 2.43
2227 2691 7.357951 TCGCACAAAATTTTCTTTTCAGTTT 57.642 28.000 0.00 0.00 0.00 2.66
2228 2692 6.959671 TCGCACAAAATTTTCTTTTCAGTT 57.040 29.167 0.00 0.00 0.00 3.16
2229 2693 6.959671 TTCGCACAAAATTTTCTTTTCAGT 57.040 29.167 0.00 0.00 0.00 3.41
2230 2694 7.844482 AGATTCGCACAAAATTTTCTTTTCAG 58.156 30.769 0.00 0.00 0.00 3.02
2231 2695 7.042791 GGAGATTCGCACAAAATTTTCTTTTCA 60.043 33.333 0.00 0.00 0.00 2.69
2232 2696 7.042791 TGGAGATTCGCACAAAATTTTCTTTTC 60.043 33.333 0.00 0.00 0.00 2.29
2233 2697 6.760770 TGGAGATTCGCACAAAATTTTCTTTT 59.239 30.769 0.00 0.00 0.00 2.27
2234 2698 6.279882 TGGAGATTCGCACAAAATTTTCTTT 58.720 32.000 0.00 0.00 0.00 2.52
2235 2699 5.841810 TGGAGATTCGCACAAAATTTTCTT 58.158 33.333 0.00 0.00 0.00 2.52
2236 2700 5.452078 TGGAGATTCGCACAAAATTTTCT 57.548 34.783 0.00 0.00 0.00 2.52
2237 2701 5.445010 GCATGGAGATTCGCACAAAATTTTC 60.445 40.000 0.00 0.00 0.00 2.29
2238 2702 4.389687 GCATGGAGATTCGCACAAAATTTT 59.610 37.500 0.00 0.00 0.00 1.82
2239 2703 3.928375 GCATGGAGATTCGCACAAAATTT 59.072 39.130 0.00 0.00 0.00 1.82
2240 2704 3.056678 TGCATGGAGATTCGCACAAAATT 60.057 39.130 0.00 0.00 0.00 1.82
2241 2705 2.492881 TGCATGGAGATTCGCACAAAAT 59.507 40.909 0.00 0.00 0.00 1.82
2242 2706 1.885233 TGCATGGAGATTCGCACAAAA 59.115 42.857 0.00 0.00 0.00 2.44
2243 2707 1.532523 TGCATGGAGATTCGCACAAA 58.467 45.000 0.00 0.00 0.00 2.83
2244 2708 1.469703 CTTGCATGGAGATTCGCACAA 59.530 47.619 0.00 0.00 33.29 3.33
2245 2709 1.089112 CTTGCATGGAGATTCGCACA 58.911 50.000 0.00 0.00 33.29 4.57
2246 2710 1.372582 TCTTGCATGGAGATTCGCAC 58.627 50.000 0.00 0.00 33.29 5.34
2247 2711 2.216046 GATCTTGCATGGAGATTCGCA 58.784 47.619 1.03 0.00 34.13 5.10
2248 2712 2.216046 TGATCTTGCATGGAGATTCGC 58.784 47.619 1.03 0.00 34.13 4.70
2249 2713 4.888038 TTTGATCTTGCATGGAGATTCG 57.112 40.909 1.03 0.00 34.13 3.34
2250 2714 6.446781 TCTTTTGATCTTGCATGGAGATTC 57.553 37.500 1.03 0.00 34.13 2.52
2251 2715 6.845758 TTCTTTTGATCTTGCATGGAGATT 57.154 33.333 1.03 0.00 34.13 2.40
2252 2716 8.707796 ATATTCTTTTGATCTTGCATGGAGAT 57.292 30.769 0.00 0.00 36.60 2.75
2253 2717 9.281371 CTATATTCTTTTGATCTTGCATGGAGA 57.719 33.333 0.00 0.00 0.00 3.71
2254 2718 8.021973 GCTATATTCTTTTGATCTTGCATGGAG 58.978 37.037 0.00 0.00 0.00 3.86
2255 2719 7.503230 TGCTATATTCTTTTGATCTTGCATGGA 59.497 33.333 0.00 0.00 0.00 3.41
2256 2720 7.654568 TGCTATATTCTTTTGATCTTGCATGG 58.345 34.615 0.00 0.00 0.00 3.66
2257 2721 9.343103 GATGCTATATTCTTTTGATCTTGCATG 57.657 33.333 0.00 0.00 36.57 4.06
2258 2722 8.235226 CGATGCTATATTCTTTTGATCTTGCAT 58.765 33.333 0.00 0.00 38.67 3.96
2259 2723 7.442062 TCGATGCTATATTCTTTTGATCTTGCA 59.558 33.333 0.00 0.00 0.00 4.08
2260 2724 7.743838 GTCGATGCTATATTCTTTTGATCTTGC 59.256 37.037 0.00 0.00 0.00 4.01
2261 2725 8.768019 TGTCGATGCTATATTCTTTTGATCTTG 58.232 33.333 0.00 0.00 0.00 3.02
2262 2726 8.893219 TGTCGATGCTATATTCTTTTGATCTT 57.107 30.769 0.00 0.00 0.00 2.40
2263 2727 8.363390 TCTGTCGATGCTATATTCTTTTGATCT 58.637 33.333 0.00 0.00 0.00 2.75
2264 2728 8.526218 TCTGTCGATGCTATATTCTTTTGATC 57.474 34.615 0.00 0.00 0.00 2.92
2265 2729 8.363390 TCTCTGTCGATGCTATATTCTTTTGAT 58.637 33.333 0.00 0.00 0.00 2.57
2266 2730 7.649705 GTCTCTGTCGATGCTATATTCTTTTGA 59.350 37.037 0.00 0.00 0.00 2.69
2267 2731 7.436376 TGTCTCTGTCGATGCTATATTCTTTTG 59.564 37.037 0.00 0.00 0.00 2.44
2268 2732 7.492524 TGTCTCTGTCGATGCTATATTCTTTT 58.507 34.615 0.00 0.00 0.00 2.27
2269 2733 7.043961 TGTCTCTGTCGATGCTATATTCTTT 57.956 36.000 0.00 0.00 0.00 2.52
2270 2734 6.641169 TGTCTCTGTCGATGCTATATTCTT 57.359 37.500 0.00 0.00 0.00 2.52
2271 2735 6.832520 ATGTCTCTGTCGATGCTATATTCT 57.167 37.500 0.00 0.00 0.00 2.40
2272 2736 7.217258 CGTTATGTCTCTGTCGATGCTATATTC 59.783 40.741 0.00 0.00 0.00 1.75
2273 2737 7.024171 CGTTATGTCTCTGTCGATGCTATATT 58.976 38.462 0.00 0.00 0.00 1.28
2274 2738 6.371825 TCGTTATGTCTCTGTCGATGCTATAT 59.628 38.462 0.00 0.00 0.00 0.86
2275 2739 5.699458 TCGTTATGTCTCTGTCGATGCTATA 59.301 40.000 0.00 0.00 0.00 1.31
2276 2740 4.515567 TCGTTATGTCTCTGTCGATGCTAT 59.484 41.667 0.00 0.00 0.00 2.97
2277 2741 3.875134 TCGTTATGTCTCTGTCGATGCTA 59.125 43.478 0.00 0.00 0.00 3.49
2278 2742 2.683362 TCGTTATGTCTCTGTCGATGCT 59.317 45.455 0.00 0.00 0.00 3.79
2279 2743 3.066369 TCGTTATGTCTCTGTCGATGC 57.934 47.619 0.00 0.00 0.00 3.91
2280 2744 4.663166 ACTTCGTTATGTCTCTGTCGATG 58.337 43.478 0.00 0.00 0.00 3.84
2281 2745 4.395231 TGACTTCGTTATGTCTCTGTCGAT 59.605 41.667 0.00 0.00 34.57 3.59
2282 2746 3.749609 TGACTTCGTTATGTCTCTGTCGA 59.250 43.478 0.00 0.00 34.57 4.20
2283 2747 3.846896 GTGACTTCGTTATGTCTCTGTCG 59.153 47.826 0.00 0.00 34.57 4.35
2284 2748 4.795268 TGTGACTTCGTTATGTCTCTGTC 58.205 43.478 0.00 0.00 34.57 3.51
2285 2749 4.278669 ACTGTGACTTCGTTATGTCTCTGT 59.721 41.667 0.00 0.00 35.58 3.41
2286 2750 4.799678 ACTGTGACTTCGTTATGTCTCTG 58.200 43.478 0.00 0.00 34.57 3.35
2287 2751 4.378563 CGACTGTGACTTCGTTATGTCTCT 60.379 45.833 0.00 0.00 34.57 3.10
2288 2752 3.846896 CGACTGTGACTTCGTTATGTCTC 59.153 47.826 0.00 0.00 34.57 3.36
2289 2753 3.501062 TCGACTGTGACTTCGTTATGTCT 59.499 43.478 6.98 0.00 36.60 3.41
2290 2754 3.602915 GTCGACTGTGACTTCGTTATGTC 59.397 47.826 8.70 0.00 36.60 3.06
2291 2755 3.252701 AGTCGACTGTGACTTCGTTATGT 59.747 43.478 19.30 0.00 46.85 2.29
2292 2756 3.604198 CAGTCGACTGTGACTTCGTTATG 59.396 47.826 32.77 7.29 46.85 1.90
2293 2757 3.501062 TCAGTCGACTGTGACTTCGTTAT 59.499 43.478 37.21 1.83 46.85 1.89
2294 2758 2.874086 TCAGTCGACTGTGACTTCGTTA 59.126 45.455 37.21 17.03 46.85 3.18
2295 2759 1.674441 TCAGTCGACTGTGACTTCGTT 59.326 47.619 37.21 2.51 46.85 3.85
2296 2760 1.264557 CTCAGTCGACTGTGACTTCGT 59.735 52.381 37.21 3.06 46.85 3.85
2297 2761 1.400371 CCTCAGTCGACTGTGACTTCG 60.400 57.143 36.67 21.82 46.85 3.79
2298 2762 1.667467 GCCTCAGTCGACTGTGACTTC 60.667 57.143 36.67 22.72 46.85 3.01
2299 2763 0.315568 GCCTCAGTCGACTGTGACTT 59.684 55.000 36.67 7.27 46.85 3.01
2301 2765 0.315568 AAGCCTCAGTCGACTGTGAC 59.684 55.000 36.67 29.54 44.12 3.67
2302 2766 1.813178 CTAAGCCTCAGTCGACTGTGA 59.187 52.381 36.67 23.45 44.12 3.58
2303 2767 1.734047 GCTAAGCCTCAGTCGACTGTG 60.734 57.143 37.21 34.08 44.12 3.66
2304 2768 0.528470 GCTAAGCCTCAGTCGACTGT 59.472 55.000 37.21 23.96 44.12 3.55
2305 2769 0.528017 TGCTAAGCCTCAGTCGACTG 59.472 55.000 34.76 34.76 45.08 3.51
2306 2770 1.257743 TTGCTAAGCCTCAGTCGACT 58.742 50.000 13.58 13.58 0.00 4.18
2307 2771 2.080286 TTTGCTAAGCCTCAGTCGAC 57.920 50.000 7.70 7.70 0.00 4.20
2308 2772 2.037251 AGTTTTGCTAAGCCTCAGTCGA 59.963 45.455 0.00 0.00 0.00 4.20
2309 2773 2.417719 AGTTTTGCTAAGCCTCAGTCG 58.582 47.619 0.00 0.00 0.00 4.18
2310 2774 6.594159 TGTTATAGTTTTGCTAAGCCTCAGTC 59.406 38.462 0.00 0.00 32.72 3.51
2311 2775 6.472887 TGTTATAGTTTTGCTAAGCCTCAGT 58.527 36.000 0.00 0.00 32.72 3.41
2312 2776 6.985188 TGTTATAGTTTTGCTAAGCCTCAG 57.015 37.500 0.00 0.00 32.72 3.35
2334 2798 9.180678 GCGAGGTTTAAATGAATTGGTTATATG 57.819 33.333 0.00 0.00 0.00 1.78
2335 2799 9.131791 AGCGAGGTTTAAATGAATTGGTTATAT 57.868 29.630 0.00 0.00 0.00 0.86
2336 2800 8.514330 AGCGAGGTTTAAATGAATTGGTTATA 57.486 30.769 0.00 0.00 0.00 0.98
2337 2801 7.339466 AGAGCGAGGTTTAAATGAATTGGTTAT 59.661 33.333 0.00 0.00 0.00 1.89
2338 2802 6.657541 AGAGCGAGGTTTAAATGAATTGGTTA 59.342 34.615 0.00 0.00 0.00 2.85
2339 2803 5.476945 AGAGCGAGGTTTAAATGAATTGGTT 59.523 36.000 0.00 0.00 0.00 3.67
2344 2808 6.092259 GTGTGTAGAGCGAGGTTTAAATGAAT 59.908 38.462 0.00 0.00 0.00 2.57
2345 2809 5.407387 GTGTGTAGAGCGAGGTTTAAATGAA 59.593 40.000 0.00 0.00 0.00 2.57
2400 2864 4.999310 TCTCATAGTAGAACCCGATCCAT 58.001 43.478 0.00 0.00 0.00 3.41
2414 2878 8.842358 TTTGTTTTTCCGTTATCTCTCATAGT 57.158 30.769 0.00 0.00 0.00 2.12
2419 2883 8.623310 TTTGTTTTGTTTTTCCGTTATCTCTC 57.377 30.769 0.00 0.00 0.00 3.20
2433 2897 9.816354 AGCAGTATAATGTTCTTTGTTTTGTTT 57.184 25.926 1.67 0.00 0.00 2.83
2446 2910 7.775093 TGCCTCAAAGATAAGCAGTATAATGTT 59.225 33.333 1.67 0.00 0.00 2.71
2451 2915 7.508687 TGAATGCCTCAAAGATAAGCAGTATA 58.491 34.615 0.00 0.00 36.80 1.47
2452 2916 6.359804 TGAATGCCTCAAAGATAAGCAGTAT 58.640 36.000 0.00 0.00 36.80 2.12
2453 2917 5.744171 TGAATGCCTCAAAGATAAGCAGTA 58.256 37.500 0.00 0.00 36.80 2.74
2456 2920 5.981088 TTTGAATGCCTCAAAGATAAGCA 57.019 34.783 6.91 0.00 46.80 3.91
2472 2936 4.651045 ACCTTGCACTTCTTCCTTTTGAAT 59.349 37.500 0.00 0.00 31.06 2.57
2567 3031 1.509463 CGACCAAAGCTGCATGCAT 59.491 52.632 22.97 3.95 45.94 3.96
2568 3032 2.956194 CGACCAAAGCTGCATGCA 59.044 55.556 21.29 21.29 45.94 3.96
2569 3033 2.505557 GCGACCAAAGCTGCATGC 60.506 61.111 11.82 11.82 43.29 4.06
2570 3034 1.005294 GTTGCGACCAAAGCTGCATG 61.005 55.000 1.02 0.00 37.17 4.06
2572 3036 1.785041 GAGTTGCGACCAAAGCTGCA 61.785 55.000 1.02 0.00 35.15 4.41
2573 3037 1.081840 GAGTTGCGACCAAAGCTGC 60.082 57.895 0.00 0.00 35.28 5.25
2574 3038 0.236711 CTGAGTTGCGACCAAAGCTG 59.763 55.000 0.00 0.00 35.28 4.24
2613 3083 2.621763 GATGGCGGTCATCCACATC 58.378 57.895 11.49 0.00 44.92 3.06
2634 3104 4.557695 CGGCAAACAACCAATAGCTTGTAA 60.558 41.667 0.00 0.00 30.26 2.41
2637 3107 2.327568 CGGCAAACAACCAATAGCTTG 58.672 47.619 0.00 0.00 0.00 4.01
2655 3125 1.298788 GGACACAAAAACACGCCGG 60.299 57.895 0.00 0.00 0.00 6.13
2656 3126 1.652930 CGGACACAAAAACACGCCG 60.653 57.895 0.00 0.00 0.00 6.46
2658 3128 1.468340 GCACGGACACAAAAACACGC 61.468 55.000 0.00 0.00 0.00 5.34
2659 3129 0.179187 TGCACGGACACAAAAACACG 60.179 50.000 0.00 0.00 0.00 4.49
2660 3130 2.202295 ATGCACGGACACAAAAACAC 57.798 45.000 0.00 0.00 0.00 3.32
2662 3132 2.803451 TCAATGCACGGACACAAAAAC 58.197 42.857 0.00 0.00 0.00 2.43
2663 3133 3.181482 ACATCAATGCACGGACACAAAAA 60.181 39.130 0.00 0.00 0.00 1.94
2664 3134 2.360483 ACATCAATGCACGGACACAAAA 59.640 40.909 0.00 0.00 0.00 2.44
2665 3135 1.952990 ACATCAATGCACGGACACAAA 59.047 42.857 0.00 0.00 0.00 2.83
2666 3136 1.603456 ACATCAATGCACGGACACAA 58.397 45.000 0.00 0.00 0.00 3.33
2667 3137 1.266446 CAACATCAATGCACGGACACA 59.734 47.619 0.00 0.00 0.00 3.72
2668 3138 1.401409 CCAACATCAATGCACGGACAC 60.401 52.381 0.00 0.00 0.00 3.67
2669 3139 0.880441 CCAACATCAATGCACGGACA 59.120 50.000 0.00 0.00 0.00 4.02
2670 3140 1.164411 TCCAACATCAATGCACGGAC 58.836 50.000 0.00 0.00 0.00 4.79
2671 3141 1.744522 CATCCAACATCAATGCACGGA 59.255 47.619 0.00 0.00 0.00 4.69
2672 3142 1.473677 ACATCCAACATCAATGCACGG 59.526 47.619 0.00 0.00 0.00 4.94
2673 3143 2.095110 ACACATCCAACATCAATGCACG 60.095 45.455 0.00 0.00 0.00 5.34
2674 3144 3.247442 CACACATCCAACATCAATGCAC 58.753 45.455 0.00 0.00 0.00 4.57
2675 3145 2.352912 GCACACATCCAACATCAATGCA 60.353 45.455 0.00 0.00 0.00 3.96
2676 3146 2.264813 GCACACATCCAACATCAATGC 58.735 47.619 0.00 0.00 0.00 3.56
2677 3147 3.579335 TGCACACATCCAACATCAATG 57.421 42.857 0.00 0.00 0.00 2.82
2678 3148 6.474140 AATATGCACACATCCAACATCAAT 57.526 33.333 0.00 0.00 37.74 2.57
2679 3149 5.918426 AATATGCACACATCCAACATCAA 57.082 34.783 0.00 0.00 37.74 2.57
2680 3150 5.008911 GCTAATATGCACACATCCAACATCA 59.991 40.000 0.00 0.00 37.74 3.07
2681 3151 5.240183 AGCTAATATGCACACATCCAACATC 59.760 40.000 0.00 0.00 37.74 3.06
2682 3152 5.135383 AGCTAATATGCACACATCCAACAT 58.865 37.500 0.00 0.00 37.74 2.71
2683 3153 4.525996 AGCTAATATGCACACATCCAACA 58.474 39.130 0.00 0.00 37.74 3.33
2684 3154 6.605849 CATAGCTAATATGCACACATCCAAC 58.394 40.000 0.00 0.00 37.74 3.77
2685 3155 6.806388 CATAGCTAATATGCACACATCCAA 57.194 37.500 0.00 0.00 37.74 3.53
2699 3169 0.322975 CCGGCCTCTGCATAGCTAAT 59.677 55.000 0.00 0.00 40.13 1.73
2700 3170 1.748403 CCGGCCTCTGCATAGCTAA 59.252 57.895 0.00 0.00 40.13 3.09
2702 3172 3.554342 CCCGGCCTCTGCATAGCT 61.554 66.667 0.00 0.00 40.13 3.32
2703 3173 3.866582 ACCCGGCCTCTGCATAGC 61.867 66.667 0.00 0.00 40.13 2.97
2740 3211 6.203808 TGATTCAAAATGGAGCATCAAGAG 57.796 37.500 0.00 0.00 36.25 2.85
2769 3240 9.052080 GCTTGTAATTTTTCGATAAAGAGTGAC 57.948 33.333 7.13 2.04 0.00 3.67
2775 3247 8.948853 TGACAGCTTGTAATTTTTCGATAAAG 57.051 30.769 7.13 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.