>input_sequence_68351
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-----------------------------------------------------------------------ATGATGCAC
TTCGCTCTCAGAGGCACCGCGGCCGCGGGGAGGAGGAAGGCCGCGCACGCCCGGTCGGCGAGCCATCCGTGCCACTGCCA
GTGCCACCCCGTCCACACGCGCCTCGACGCCGGCGTCCGCGCGCTCAGGGCGTGGTCGGCCTCCGCCACGGACGGGACTT
CGGGGCTCGCGCACGTGGAGGCCGTCCTGGCCGTGCTCGGCGAGTTCCTCGCGCTGCCGCAGGCCGCGGCGGCCCTCCGC
CACGACGCGTCCGCCTGCGATCGGTTCCTCACGCTCGCCGACGCGTACGGCTCGTTCGAGCAGGCGCTGCTCGCGCTCAA
GCAGAGCGTCGCGCAGTTGCGGGCGGGCGTCCGGCTCGGGGACGGCGTGATGGTCGCCGCGTCGCTCCGGGCACGCAGGC
GCGCAGAGAAGGAGCTGTTCGGCCTCGCCGCGGCGATGCGGCACGCCTCGAGGCACACCATGCTGGCGCCGGTGCATGCC
GCGGACGGTGAGGTCACCGGCGTGGTGGCGGAGGCGGCGGCGGCCACGGCGTCGGCGTCGGAGGCCATCTTCCTGTGGTG
TGCGACAATGTCCCCGGACGTATCGGCAGTGGTCGAGACGGTGCGCTCGAACGCGTGGCTGGCGAGGCTGCTGGTCGTGC
ATGTGGCCAAGAAGGCGGTGTCACTGCCAGAGACGGCG---------GCAGCATTGGAGAGGCTTGAGGAACGCATTGGC
GAGCTCGAGAGTGGGAGCGAGAAGGTGTTTAGTAGTCTGCTTCAGACTAGAGTTTCACTCCTGAACATCCATAATACCTT
GTAG----------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G177300
GTCTCGCCCTTGCTCTACCTGCTACCACATTGGTTGGGGTGCTCCTCGGCTGATCCATATTCAGTTCATCAATAAATCTG
CAGATAAATAGATGTGTGGCCGATGTATTGCTTAAAATAAGCACATAGGACTAGTACCGAGGCAGCCTCAAAGAGGCTCC
GGTTTCGGCCGTCAAAACAGAGCCCCTTCGAGCCGGAATGTCTCAGTTTTTTCATATTTTTTTTGAGGAATACTACATTT
TCTAGAATGAGAAATGCTCCCTCTGTAAAAT-ATATAAGAGCGTTTTTATTGATCTAAACACTTTTATATTTCTTTACGA
AGGGAGTACTACTCAT-------------------------------TAAAATATAAGATTTTTCTAAGACTAAACTAGT
CTAAAAAGCTTCTTACATTTTGATACGAAGGAAGTGATTACATATACTAAGATCACGGAACCTGGTATTTCTCAAAAAGA
AAAGCACATAGGCTTAGTACGGAGCCAGCCGCAGGTTC----TGGTTTCGGCCGTCAAAACAGAGGCCCTTCAACCTGGA
AT---GTCTGGGGCGATCCCATGACTCGAGCGAGGTTGACAGTTCACTCCCACCCCTATCATCGTACGGATCTTGGTGAC
CCAAGCAACG----------------------------------------------------------------------
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--------------------------------------------------------TTGACAGTTCATTCCCACCTTATC
ATTGAACCAATCTTGTCAACGCAATCCTACTTCACGAGAATATGC-AGTACTACGTCCAGAGTACGTGTGCATGCAAAGC
TGTTCCGTACCAAGTTCTGTGTGGCAGAGTCAAGTCCGGTGTAGGAGTATGT-------GCGTACCACTACTACGGAGTA
GTTTTGCCCCGCGC--CGCAGTACAGAAAACAGCAGCCCAGCGCTGCGCCAGCTCCCACACGGACG-AAAGCTTTTCCTT
CGACGCCGCAAGTTGCGGCAAACCACGGCGCTCTGGCGGGCGGGCACGGTCATAT-AAGCTCACGTCCTTGTCCCCTCGA
TTCCACCCACCAG--------CGCGCCAAGAAAACCAACGTGCAACCGCTGCTGATACTCGTG------GCATGATGCAC
TTCGCTCTCAGAGGCACCGCGGCCGCGGGGAGGAGGAAGGCCGCGCACGCCCGGTCGGCGAGCCATCCGTGCCACTGCCA
GTGCCACCCCGTCCACACGCGCCTCGACGCCGGCGTCCGCGCGCTCAGGGCGTGGTCGGCCTCCGCCACGGACGGGACTT
CGGGGCTCGCGCACGTGGAGGCCGTCCTGGCCGTGCTCGGCGAGTTCCTCGCGCTGCCGCAGGCCGCGGCGGCCCTCCGC
CACGACGCGTCCGCCTGCGATCGGTTCCTCACGCTCGCCGACGCGTACGGCTCGTTCGAGCAGGCGCTGCTCGCGCTCAA
GCAGAGCGTCGCGCAGTTGCGGGCGGGCGTCCGGCTCGGGGACGGCGTGATGGTCGCCGCGTCGCTCCGGGCACGCAGGC
GCGCAGAGAAGGAGCTGTTCGGCCTCGCCGCGGCGATGCGGCACGCCTCGAGGCACACCATGCTGGCGCCGGTGCATGCC
GCGGACGGTGAGGTCACCGGCGTGGTGGCGGAGGCGGCGGCGGCCACGGCGTCGGCGTCGGAGGCCATCTTCCTGTGGTG
TGCGACAATGTCCCCGGACGTATCGGCAGTGGTCGAGACGGTGCGCTCGAACGCGTGGCTGGCGAGGCTGCTGGTCGTGC
ATGTGGCCAAGAAGGCGGTGTCACTGCCAGAGACGGCG---------GCAGCATTGGAGAGGCTTGAGGAACGCATTGGC
GAGCTCGAGAGTGGGAGCGAGAAGGTGTTTAGTAGTCTGCTTCAGACTAGAGTTTCACTCCTGAACATCCATAATACCTT
GTAGCCAAAGACTAG---------AGTGAATCTGTACGTAGAGTTGCACAGTGTTACATGTTGTTT-------CATTCTC
ATGAACTTACGCTTGCTGCACAATTATTTCC------CTTCAACTTCATTTACTCGATGAGATCTGCTCTAAAAAGAACA
AGCAAA-TTCCACGATGGCTCAGAAAGAACGTATGATAGGGACACTACTTTTATTCCCAAATGATAGCGCCACATGTGTG
GCACGAAGCAATTTCGCCCACACGTTTTTTGATGACAACTTTAGTTACAAGAGAATGGCAACTTTATTGGGTAATCATCT
CAAATTTTCTTTAAGCTAACTCACTCTTGAGTTTTCCATTATTAACATATAGGGTGTGTCTAGGGCTCAGTCGACTGAGA
CTTAACCAAGTCTCAATCAAGTGATATAGTATATAAGAAGAAGAAAGAAAAAACTGAAAAGAAAATTTTGTGCGAATCTC
CATGCAAGATCAAAAGAATATAGCATCGACAGAGACATAACGAAGTCACAGTCGACTGAGGCTTAGCAAAACTATAACAT
ATAACCAATTCATTTAAACCTCGCTCTACACACAGCCTACATTTTTTCTCATTCTATCCAAAAATGGATCGGGTTCTACT
ATGAGAGATAACGGAAAAACAAAACAAAGAACATTATACTGCTTATCTTTGAGGCATTCAAAAGGAAGAAGTGCAAGGTG
AAGCAAGCAATGCATGATGGTGCTTGGATTATGAAAATTGATAGAGCAATGGCATATCTTTGGCACACATATGCATGC--
----AGCTTTGGTCGCAACTCAGCCATGTGCACCTAAATGATGATGTGGATGACCGCCATCTATTACAAGCTATTGGTTG
TTTGCCGGCGTGTTTTTGTGTCCGTGCATTGATGTTGGATGTGTGCATATTAGCTATGCAGAGGCCGGGTGTGCTCATT-
TTTTTGTATCCTCTTGATGCTCCATTTTGAATCAATAAAG-TCACTCTTTATCGAAAAATTACAAGCTGTCAGCA
>chr1A_1
GTCTCACCCTTGCTCTACCCGCTACCACATTGGTTGGGGTGCTCCTCAGCTGATCCATATTCAATTCATCAATAAATCTG
CAGATAAATAAATGTGTGGCCGATGTATTGCTTAAAATAAGCACATCGGACTAG-ACCGAGGCAGCCTCAAAGAGGTTCC
GGTTTCGGCCGTCAAAACAGAGCCCCTTCGAGCCGGAATGTCTCAGTT--------TTTTTTTTGAGGAATACTAT-TTT
TTGAGAATGAGAAATACTTTCTCTGTAAAGAAATATAAGATCGTTTTTAATGATCTAAACACTATTATATTTCTTTACAA
AGGGAGTACTACTCATCAAAATATAAGATTTTTTTTAGGATAAAATATAAAATATAAGATTTTTCTGAGACTAAACTAGT
CTAAAAAGCTTCTTACATTTTGATAGGAAAGAAGTGATTACATATACTAAGATCACGGAACCTGGTATTTCTCAAAAAAG
AAAAAA------------------------------------------------------------------AAACTGGA
AT---GTCTCGGGCGATCCGATGACTATGTTATCAATCATTGTGCATGTCTTTGATGTATTGCTTAAAAGAACAGCACAT
ATGCTTAGTACCGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTGACAGTTCATTCCCACCTTATC
ATTGAACCAATCTTGTCAACGCAAACCTACTTCACGAGAATATGATAGTACTACGTCCAGAGTACGTGTGTATGCAAAGC
TGTTCCGTACCGAGATCTGTGTGGCAGAGTCAAGTCCGGAGTAC------GTGCGTACGGCGTACCACTACCACGGAGTA
GTTTTGCCCCCCGCGCCGCAGTACAGAAAACAGCAGCCCAGCGCTGCGCCAGCTCCCACATGGACGAAAAGCTTTTCCTT
CGACGCCGCAAGTTGCGGCAAACCACGGCGCCCTGGCGGGCGGGCACCGCCATAT-AAGCTCACGTCCTTGTCCCCTCGA
TTCCACATTTCCACCCAGCATCGCGCCAAGAAAACCAACGTGCAACCGCTGCTGATACTCGTCACAGTCACATGATGCAC
TTCACACTCGGAGGC------GCCGCGGGGAAGAGGAAGGCCGCGCACGCCCGGTCGGCGAGCCATCCGTGCCACTGCCA
GTGCCACCCCGTCCACACGCGCCTCGACGCCGGCGTCCGCGCGCTCAGGGCGTGGTCGGCCTCCGCCGCGGACGGGCCGT
CGGGGCTCGCGCACGTGGAGGCCGTCCTGGCCGTGCTCGGCGAGTTCCTCGCGCTGCCGCAGGCCGCGGCGGCCCTCCGC
GACGACGCGGCCGCCTGCGACCGGTTCCTCACGCTCGCCGACGCATACGGCTCGTTCGAGCAGGCGCTGCTCGCGCTCAA
GCAGAGCGTCGCGCAGCTGCGGGCGGGCGTCCGGCTCGGGGACGGCGTGATGGTCGCCGCGTCGCTCCGGGCACGCAGGC
GCGCAGAGAAGGAGCTGTGCGGCCTCGCCGCCGCGATGCGGCACGCCTCGAGGCACGTCATGCTGGCGCCAGCGGATGCC
GCGGACGGTGAGGTCACCGGCGTGGTGGCGGAGGCGGCCGCGGCCACGGCGTCGGCGTCGGAGGCCATCTTCCTGTGGTG
TGCGGCAATGTCCCCGGACGTATCGGCGCTGGTCCAGACGGTGCCCGTGAACGCGTGGCTGGCGAGGCTGCGGGTCGTGC
CTGTGGCCAAGAAGGCAGTGTCACTGCCGGAGACGGCGACGGTGGCGGCGGCGTTGGAGAGGCTTGAGGAACGCATTGGC
GAGCTCGAGAGCGGGAGCGAGAAGGTGTTCAGTAGCCTGCTTCAGGCTAGAGTTTCACTCCTGAACATCCATAATACCTT
GTAGCCAAAGATTTTAGAGAGCATAGTGAATCTGTACGTAGCGTTGCACAGTGTTACACGTTGTTTCAGTTGGCATTCTC
ATCAACTTATGCTTGCTGCACAATTATTTAC------CT------TCATTTACTCGTTGAGATCTGCTCTAAAAAGAACA
AGCAAAGTTCCACGATGGCTCAGAAAGAACGTACGATAAGCAGACTATT-------------------------------
--------------------------------------------------------------TTTATTGGGCAATCGTCT
CAAATTTTCTTTAACCTAACTCACTCTTCAGTTTTCCATTATTAACATATA-----------------------------
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---ACCACCTCATTTAAACCTCGCTCTACACACAACCCACCTTTTTTCTCATTCGATCCAAAAGTGGATCGGGTTCTCCT
ATCAGAGATAACGGAACAACAAAACAAAGGACATCCCACCGCTCATCTTTGAGGCCTTCAAAAGGAAGAAGTGGAAGGTG
TAGCAATCAATGCATGATGGTGCTTGGATTATGAAAATTGATAGAGCAATGGCATATCTTTGGCACACATTGAGAAATGC
ATGGAGCTTTGGTCGCAACTCAGCCATGTGCACCTAAATGATTATGTGGATGACCGCCATCTAATAGAAGCTATTGGTTG
TTTGTTGATATTAA------------------------ATGTGTGCATCCTGACTATGCAGAGGTCCGGTGTGTTCATTA
TTTTTGTATCTTCTTGATGCTCCATTTTTAGTCAATAAAATTCACTGTTTATCGAAAAACTACAAGCTATCAGCA
>chr1B_447
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------------------------------------------------------------------------------GA
TAAGCACATAGGACTAGTACCGAGCCTGCCCCAAGCAGGTTGTGGTTTCGGACGTCAAAACAGAGGCCCTTGAACCTGGA
ATGTTGTTTCGGGCGATCCGATGACTGGAGCGAGGTTGACAGCTCACTCCCACCTCTATCATCGTACGGATCTTGGTGAC
TCGAGCAACG----------------------------------------------------------------------
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--------------------------------------------------------TTGACAGTTCATTCCCACCTTATC
ATTGAACCAATCTTGTCAACGCAAACCTACTTCACGAGAATATGATAGTACTACGTCCAGAGTACGTGTGTATGCAAAGC
TGTTCCGTACCAAGTTCTGTGTGGCAGAGTCAAGTCCGGTGTAC------GT-------GCGTACCACTACTACGGAGTA
GTTTTG-CCCCCGCGCCGCAGTACAGAAAACAGCAGCCCAGCGCTGCGCCAGCTCCCACATGGACGAAAAGCTTTTCCTC
GAT----GCAAGCTGCGGCAAACCACGGCGCCCTGGCGGGCGGGCACGGCCATATAAAGCTCACGTCCTTGTCC--TCGA
TTCCACTCACCAG--------CGCGCCAAGAAAACCAAGGTGCAACCGCTGCTGATACTCA------TCGCATGATGCAC
TTCGCTCTCAGAGGCACCGCGGCCGTGGGGAGGAGGAAGACCGCGCACGCCCGGTCGGCGAGTCATCCGTGCCACTGCCA
GTGCCACCCCGTCCACACGCGCCTCGATGCCGGCGTCCGCGCGCTCAGGGCATGGTCGGCCTCCGCCGAGGACGGGCCTT
CGGGGCTCGCGCACCTGGAGGCCGTCCTGGCCGTGCTCGGCGAGTTCCTTGCCCTGCCGCAGGCCGCGGCTGCCCTCCGT
GACGACGCAGCCGCCTGCGACCGGTTCCTCACGCTCGCCGACGCGTACGGCTCGTTCGAGCAGGCGCTGCTCGCGCTCAA
GCAGAGCGTCGCGCAGCTGCGGGCGGGCGTCCGGCTCGGGGACGGCACGATGGTCGCCGCGTCGCTCCGGGCACGCAGGC
GCGCAGAGAAGGAGCTGTGCGGCCTCGCCGCGGCGATGCGGCACGCCTCAAGGCACGCCATGCTGGCGCCGGCGGATGCC
GCGGACGGCGAGGTCACCGGCGTGGTGGCGGAGGCGGCCGCGGCCACGGCGTCGGCGTCGGAGGCCATCTTCCTGTGGTG
TGCGGCAATGTCCCCGGACGTATCGGCAGTGGTCCAGACGGTGCCCGTGAACGCATGGCTGGCGAGGCTGCGGGTCGTGC
ATGTGGCCAAGAAGGCAGTGTCACTGCCAGAGACGGCG---------GCGGCGTTGGAGAGGCTTGAGGAACGCATTGGC
GAGCTCGAGAGCGGGAGCGAGAAGGTGTTTAGTAGCCTGCTTCAGGCTAGAGTTTCACTGCTGAACATCCATAATACCTT
GTAGCCAAAGATTCAAGAGGACATAGTGAATCTGTACGTAGCGTTGCACAGTGTTACACGTTGTTTCAGTTGGCATTCTC
ATGAACTTATGCTTGCTGCACAATTATTTCCCTTCAACT------TCATTTACTCGATGAGATCTGCTCTAAAAAGCACA
AGCAAAGTTCCACGATGGCTCAGAAAGAACGTACGATAAAGAGACCATT-------------------------------
--------------------------------------------------------------TTTATT------------
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>SNPs
-----S-------------S---------------------------S---------------S----------------
----------S-----------------------------------S-------S---------------------S---
------------------------------------------------SSSSSSSS-------------------SS---
-SS------------S--SS---------SS---------S--------S-------------S--------------S-
------------------------------------------------------------------S-------------
-------------------------S---S--------------------------------------------------
------------SS------S-----S---S--S-SSS-------------S-------------------S--------
---------S---------S------S---------------------------S-------------------------
S-S-----------------------------------------------------------------------------
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------------------------S-------------------S-------------------------S---------
-------------------------------------------SSSSSSS------------------------------
----------S-------------------------------------------------S-------------------
-------------------------------S-----------------S------------------------------
------S-------------------------------------------------------S-----------------
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-------------------------------------------------------------------S--------S---
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S--------S----------S-----------------------------------------------------------
----------------S---------------------------------------------------------------
------------------S-------------------------------------S---------------S-S-----
--------------------------------------S-----------------------------------------
----S-----------------------------S---------S-SS-----------------------S--------
----------------S--------------------------------S--S---------------------------
-----------S-----------------------S---------S----------------------------------
-----------S-SS--------------------------S----------------S---------------------
---------S-----------------------------SSSSSS-----------------------------------
---------------------------------S----S---S----S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S----S---
--------------S-------------S----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS----SS-------------------------S--S--S-------------S--------S-------------S--
--S-------------S------------S----SSS--S---S-----------S-----------------S------
S-----S---------------------------------------------------------------SSSS-SSS--
------------------------------------------S--------------------S--S-------------
----SS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSS----------SS-SS-----------S-S------S------
----------S-----------------S-S--------S------S------------S--------S------
>forward_1367
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-------------------------------------------------------------------CTTGTCCCCTCGA
TTCCACC-------------------------------------------------------------------------
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>reverse_2615
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------------------------------------------------------TGTGTCTAGGGCTCAGTCGA------
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