Multiple sequence alignment - TraesCS1D01G173100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G173100 chr1D 100.000 2525 0 0 1 2525 247124338 247121814 0.000000e+00 4663.0
1 TraesCS1D01G173100 chr1D 87.446 1163 88 31 592 1719 246971082 246969943 0.000000e+00 1286.0
2 TraesCS1D01G173100 chr1D 98.266 346 6 0 2180 2525 46626799 46627144 7.720000e-170 606.0
3 TraesCS1D01G173100 chr1D 87.838 518 48 3 1023 1531 246679943 246679432 6.010000e-166 593.0
4 TraesCS1D01G173100 chr1D 85.053 281 36 5 480 755 246680348 246680069 5.320000e-72 281.0
5 TraesCS1D01G173100 chr1A 94.671 1595 53 19 248 1824 300576252 300577832 0.000000e+00 2446.0
6 TraesCS1D01G173100 chr1A 87.325 1428 111 30 461 1823 300672053 300673475 0.000000e+00 1570.0
7 TraesCS1D01G173100 chr1A 87.500 512 49 5 1023 1525 300944104 300944609 6.060000e-161 577.0
8 TraesCS1D01G173100 chr1A 94.024 251 14 1 1 251 300575695 300575944 1.830000e-101 379.0
9 TraesCS1D01G173100 chr1B 91.791 1413 60 25 442 1824 330990929 330992315 0.000000e+00 1916.0
10 TraesCS1D01G173100 chr1B 86.908 1436 111 28 461 1824 331083457 331084887 0.000000e+00 1539.0
11 TraesCS1D01G173100 chr1B 88.132 514 46 4 1027 1531 331363523 331364030 4.650000e-167 597.0
12 TraesCS1D01G173100 chr1B 96.089 358 12 2 2168 2524 656480088 656479732 1.300000e-162 582.0
13 TraesCS1D01G173100 chr1B 93.842 341 17 3 1843 2179 502798040 502798380 6.230000e-141 510.0
14 TraesCS1D01G173100 chr1B 85.765 281 34 5 480 755 331363114 331363393 2.460000e-75 292.0
15 TraesCS1D01G173100 chr7D 98.261 345 6 0 2181 2525 584040576 584040232 2.780000e-169 604.0
16 TraesCS1D01G173100 chr2B 95.954 346 14 0 2180 2525 114054043 114054388 1.700000e-156 562.0
17 TraesCS1D01G173100 chr3B 95.442 351 16 0 2175 2525 721642927 721642577 6.100000e-156 560.0
18 TraesCS1D01G173100 chr3B 95.087 346 17 0 2180 2525 20085589 20085244 1.710000e-151 545.0
19 TraesCS1D01G173100 chr3B 96.479 142 5 0 1844 1985 766656684 766656543 4.200000e-58 235.0
20 TraesCS1D01G173100 chr3B 94.340 106 6 0 2074 2179 766656292 766656187 2.010000e-36 163.0
21 TraesCS1D01G173100 chr3A 95.665 346 15 0 2180 2525 746586992 746587337 7.890000e-155 556.0
22 TraesCS1D01G173100 chr6A 94.813 347 18 0 2179 2525 256322276 256322622 2.210000e-150 542.0
23 TraesCS1D01G173100 chr7A 94.220 346 20 0 2180 2525 435974636 435974291 1.720000e-146 529.0
24 TraesCS1D01G173100 chr5A 92.899 338 22 2 1844 2179 68485483 68485146 8.120000e-135 490.0
25 TraesCS1D01G173100 chr5A 92.053 151 11 1 1838 1987 464499054 464498904 7.080000e-51 211.0
26 TraesCS1D01G173100 chr5A 92.254 142 8 2 2041 2179 464498600 464498459 5.510000e-47 198.0
27 TraesCS1D01G173100 chr5B 81.414 608 77 14 942 1525 466844210 466844805 4.920000e-127 464.0
28 TraesCS1D01G173100 chr4B 94.194 155 7 1 2027 2179 193482090 193481936 4.200000e-58 235.0
29 TraesCS1D01G173100 chr4B 95.302 149 6 1 1847 1994 193482394 193482246 4.200000e-58 235.0
30 TraesCS1D01G173100 chr6D 81.481 243 33 4 515 748 46860954 46861193 3.320000e-44 189.0
31 TraesCS1D01G173100 chr6B 81.070 243 34 6 515 748 116106818 116107057 1.540000e-42 183.0
32 TraesCS1D01G173100 chr6B 87.143 70 6 3 1839 1906 20868964 20868896 2.690000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G173100 chr1D 247121814 247124338 2524 True 4663.0 4663 100.0000 1 2525 1 chr1D.!!$R2 2524
1 TraesCS1D01G173100 chr1D 246969943 246971082 1139 True 1286.0 1286 87.4460 592 1719 1 chr1D.!!$R1 1127
2 TraesCS1D01G173100 chr1D 246679432 246680348 916 True 437.0 593 86.4455 480 1531 2 chr1D.!!$R3 1051
3 TraesCS1D01G173100 chr1A 300672053 300673475 1422 False 1570.0 1570 87.3250 461 1823 1 chr1A.!!$F1 1362
4 TraesCS1D01G173100 chr1A 300575695 300577832 2137 False 1412.5 2446 94.3475 1 1824 2 chr1A.!!$F3 1823
5 TraesCS1D01G173100 chr1A 300944104 300944609 505 False 577.0 577 87.5000 1023 1525 1 chr1A.!!$F2 502
6 TraesCS1D01G173100 chr1B 330990929 330992315 1386 False 1916.0 1916 91.7910 442 1824 1 chr1B.!!$F1 1382
7 TraesCS1D01G173100 chr1B 331083457 331084887 1430 False 1539.0 1539 86.9080 461 1824 1 chr1B.!!$F2 1363
8 TraesCS1D01G173100 chr1B 331363114 331364030 916 False 444.5 597 86.9485 480 1531 2 chr1B.!!$F4 1051
9 TraesCS1D01G173100 chr5A 464498459 464499054 595 True 204.5 211 92.1535 1838 2179 2 chr5A.!!$R2 341
10 TraesCS1D01G173100 chr5B 466844210 466844805 595 False 464.0 464 81.4140 942 1525 1 chr5B.!!$F1 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 609 0.037303 ATGACCTGGCACCAGAGTTG 59.963 55.0 18.44 3.79 46.30 3.16 F
576 904 2.352715 GGGTCTTGGAATTTCCTTTGCG 60.353 50.0 16.25 1.36 37.46 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1137 1537 0.173029 TGTTGTGCTTGTGCTTGTGG 59.827 50.0 0.0 0.0 40.48 4.17 R
2317 3018 0.030638 CCAACCCGTCAGTTTTGCTG 59.969 55.0 0.0 0.0 46.34 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.337571 CCACACTACACTCACAATGGTAGAT 60.338 44.000 0.00 0.00 37.31 1.98
64 65 2.591429 CAGTTCGCTGCCACCACA 60.591 61.111 0.00 0.00 38.53 4.17
114 115 1.622811 CTATGGCTCCACCTCATCCTC 59.377 57.143 0.00 0.00 40.22 3.71
124 125 1.953138 CTCATCCTCGCCGTCATGC 60.953 63.158 0.00 0.00 0.00 4.06
141 142 2.182842 GCCCATCACCATCGAGCAC 61.183 63.158 0.00 0.00 0.00 4.40
143 144 1.524002 CCATCACCATCGAGCACCT 59.476 57.895 0.00 0.00 0.00 4.00
187 188 2.609984 GGACATGGATGATGAGAGCGAG 60.610 54.545 0.00 0.00 35.80 5.03
194 195 0.590682 TGATGAGAGCGAGCGAGATC 59.409 55.000 0.00 0.00 0.00 2.75
234 235 0.319900 AGCGAGCGTGTTGAATGAGT 60.320 50.000 0.00 0.00 0.00 3.41
235 236 0.179240 GCGAGCGTGTTGAATGAGTG 60.179 55.000 0.00 0.00 0.00 3.51
236 237 1.418373 CGAGCGTGTTGAATGAGTGA 58.582 50.000 0.00 0.00 0.00 3.41
237 238 1.388093 CGAGCGTGTTGAATGAGTGAG 59.612 52.381 0.00 0.00 0.00 3.51
238 239 2.677199 GAGCGTGTTGAATGAGTGAGA 58.323 47.619 0.00 0.00 0.00 3.27
239 240 3.059884 GAGCGTGTTGAATGAGTGAGAA 58.940 45.455 0.00 0.00 0.00 2.87
240 241 2.802816 AGCGTGTTGAATGAGTGAGAAC 59.197 45.455 0.00 0.00 0.00 3.01
241 242 2.543848 GCGTGTTGAATGAGTGAGAACA 59.456 45.455 0.00 0.00 0.00 3.18
243 244 4.319766 GCGTGTTGAATGAGTGAGAACATT 60.320 41.667 0.00 0.00 39.06 2.71
244 245 5.377358 CGTGTTGAATGAGTGAGAACATTC 58.623 41.667 0.00 0.00 46.92 2.67
253 564 4.022329 TGAGTGAGAACATTCGCTAAGTGA 60.022 41.667 0.00 0.00 38.01 3.41
261 572 1.629013 TTCGCTAAGTGATGACTGCG 58.371 50.000 10.14 10.14 42.87 5.18
273 584 1.058903 GACTGCGCGAACGATTTCC 59.941 57.895 12.10 0.00 43.93 3.13
285 596 4.508662 GAACGATTTCCAGAAGATGACCT 58.491 43.478 0.00 0.00 0.00 3.85
298 609 0.037303 ATGACCTGGCACCAGAGTTG 59.963 55.000 18.44 3.79 46.30 3.16
302 613 4.254709 TGGCACCAGAGTTGCGCT 62.255 61.111 9.73 0.00 0.00 5.92
304 615 2.666190 GCACCAGAGTTGCGCTCA 60.666 61.111 9.73 0.00 46.47 4.26
417 728 3.195610 ACGTCAGCCAAGTTATCATCTCA 59.804 43.478 0.00 0.00 0.00 3.27
425 736 6.944862 AGCCAAGTTATCATCTCAGTTTTTCT 59.055 34.615 0.00 0.00 0.00 2.52
576 904 2.352715 GGGTCTTGGAATTTCCTTTGCG 60.353 50.000 16.25 1.36 37.46 4.85
939 1310 3.325870 CAGCGTGATCAGAACCAAGTAA 58.674 45.455 0.00 0.00 0.00 2.24
1155 1555 0.455410 TCCACAAGCACAAGCACAAC 59.545 50.000 0.00 0.00 45.49 3.32
1171 1571 1.000993 AACAAACCCCACTGCACCA 59.999 52.632 0.00 0.00 0.00 4.17
1694 2128 1.465794 AGGGAGCTTGTCGAGTAGTC 58.534 55.000 0.00 0.00 0.00 2.59
1697 2131 1.135344 GGAGCTTGTCGAGTAGTCACC 60.135 57.143 0.00 0.00 0.00 4.02
1700 2134 1.813786 GCTTGTCGAGTAGTCACCTCT 59.186 52.381 0.00 0.00 0.00 3.69
1709 2144 7.443575 TGTCGAGTAGTCACCTCTTATATAACC 59.556 40.741 0.00 0.00 0.00 2.85
1741 2181 4.778143 CTGTGGGGTAGTGCGGGC 62.778 72.222 0.00 0.00 0.00 6.13
1771 2218 0.992072 CTAAGATCCACGCGTGTGTG 59.008 55.000 34.81 21.40 44.92 3.82
1801 2248 5.652518 GGTGTCAGTCTCAGTTTACTATCC 58.347 45.833 0.00 0.00 0.00 2.59
1802 2249 5.419471 GGTGTCAGTCTCAGTTTACTATCCT 59.581 44.000 0.00 0.00 0.00 3.24
1803 2250 6.602406 GGTGTCAGTCTCAGTTTACTATCCTA 59.398 42.308 0.00 0.00 0.00 2.94
1824 2271 9.614792 ATCCTAGTTTTCTGTTGTGGAATATAC 57.385 33.333 0.00 0.00 0.00 1.47
1825 2272 8.822805 TCCTAGTTTTCTGTTGTGGAATATACT 58.177 33.333 0.00 0.00 0.00 2.12
1826 2273 9.099454 CCTAGTTTTCTGTTGTGGAATATACTC 57.901 37.037 0.00 0.00 0.00 2.59
1827 2274 7.923414 AGTTTTCTGTTGTGGAATATACTCC 57.077 36.000 0.00 0.00 35.88 3.85
1828 2275 6.884836 AGTTTTCTGTTGTGGAATATACTCCC 59.115 38.462 0.00 0.00 34.22 4.30
1829 2276 6.636454 TTTCTGTTGTGGAATATACTCCCT 57.364 37.500 0.00 0.00 34.22 4.20
1830 2277 5.871396 TCTGTTGTGGAATATACTCCCTC 57.129 43.478 0.00 0.00 34.22 4.30
1831 2278 4.654262 TCTGTTGTGGAATATACTCCCTCC 59.346 45.833 0.00 0.00 34.22 4.30
1832 2279 3.386726 TGTTGTGGAATATACTCCCTCCG 59.613 47.826 0.00 0.00 34.22 4.63
1833 2280 3.323774 TGTGGAATATACTCCCTCCGT 57.676 47.619 0.00 0.00 34.22 4.69
1834 2281 3.649843 TGTGGAATATACTCCCTCCGTT 58.350 45.455 0.00 0.00 34.22 4.44
1835 2282 4.035112 TGTGGAATATACTCCCTCCGTTT 58.965 43.478 0.00 0.00 34.22 3.60
1836 2283 4.472108 TGTGGAATATACTCCCTCCGTTTT 59.528 41.667 0.00 0.00 34.22 2.43
1837 2284 5.045432 TGTGGAATATACTCCCTCCGTTTTT 60.045 40.000 0.00 0.00 34.22 1.94
1838 2285 6.156602 TGTGGAATATACTCCCTCCGTTTTTA 59.843 38.462 0.00 0.00 34.22 1.52
1839 2286 7.049754 GTGGAATATACTCCCTCCGTTTTTAA 58.950 38.462 0.00 0.00 34.22 1.52
1840 2287 7.553760 GTGGAATATACTCCCTCCGTTTTTAAA 59.446 37.037 0.00 0.00 34.22 1.52
1841 2288 8.276477 TGGAATATACTCCCTCCGTTTTTAAAT 58.724 33.333 0.00 0.00 34.22 1.40
1880 2327 1.648720 CGCACCAGCCCAATATTCG 59.351 57.895 0.00 0.00 37.52 3.34
1893 2340 2.694829 ATATTCGGCCGGTCGAGTGC 62.695 60.000 33.23 2.54 40.42 4.40
1912 2359 1.878522 CAGCCCTCCGATTCGAACG 60.879 63.158 7.83 6.58 0.00 3.95
1921 2368 3.305964 TCCGATTCGAACGCTATCAATC 58.694 45.455 7.83 0.00 0.00 2.67
1924 2371 3.181562 CGATTCGAACGCTATCAATCGTC 60.182 47.826 0.00 0.00 40.47 4.20
1991 2439 4.767255 CAGCGGGAGAGCACCACC 62.767 72.222 0.00 0.00 40.15 4.61
1996 2444 3.075005 GGAGAGCACCACCGGCTA 61.075 66.667 0.00 0.00 42.78 3.93
1997 2445 2.496817 GAGAGCACCACCGGCTAG 59.503 66.667 0.00 0.00 42.78 3.42
1998 2446 3.724914 GAGAGCACCACCGGCTAGC 62.725 68.421 6.04 6.04 42.78 3.42
1999 2447 3.775654 GAGCACCACCGGCTAGCT 61.776 66.667 15.72 6.11 42.78 3.32
2000 2448 4.087892 AGCACCACCGGCTAGCTG 62.088 66.667 17.14 17.14 40.47 4.24
2002 2450 3.390521 CACCACCGGCTAGCTGGA 61.391 66.667 42.69 0.00 45.10 3.86
2003 2451 2.606519 ACCACCGGCTAGCTGGAA 60.607 61.111 42.69 0.00 45.10 3.53
2004 2452 1.995626 ACCACCGGCTAGCTGGAAT 60.996 57.895 42.69 26.09 45.10 3.01
2005 2453 1.227674 CCACCGGCTAGCTGGAATC 60.228 63.158 42.69 12.78 45.10 2.52
2006 2454 1.227674 CACCGGCTAGCTGGAATCC 60.228 63.158 42.69 12.03 45.10 3.01
2007 2455 2.427753 CCGGCTAGCTGGAATCCC 59.572 66.667 35.41 4.95 45.10 3.85
2008 2456 2.427753 CGGCTAGCTGGAATCCCC 59.572 66.667 16.30 0.00 0.00 4.81
2009 2457 2.839836 GGCTAGCTGGAATCCCCC 59.160 66.667 15.72 0.00 0.00 5.40
2024 2472 3.333219 CCCCCTCCTTGCAGCAGA 61.333 66.667 0.00 0.00 0.00 4.26
2025 2473 2.271497 CCCCTCCTTGCAGCAGAG 59.729 66.667 4.91 4.91 0.00 3.35
2026 2474 2.296365 CCCCTCCTTGCAGCAGAGA 61.296 63.158 12.27 4.97 0.00 3.10
2027 2475 1.221293 CCCTCCTTGCAGCAGAGAG 59.779 63.158 12.27 13.30 0.00 3.20
2028 2476 1.449956 CCTCCTTGCAGCAGAGAGC 60.450 63.158 12.27 0.00 46.19 4.09
2051 2750 2.115266 CCCACTTGTCCACCCCAC 59.885 66.667 0.00 0.00 0.00 4.61
2066 2765 2.273449 CACCACTGCCATCTCCCC 59.727 66.667 0.00 0.00 0.00 4.81
2085 2784 4.117372 GTTTCGCGCTCCGTCGTG 62.117 66.667 5.56 0.00 40.91 4.35
2096 2795 4.203076 CGTCGTGGTCGGATCCCC 62.203 72.222 6.06 2.76 37.69 4.81
2167 2868 2.164865 CTCTCTCCGCCTGCAGTTGT 62.165 60.000 13.81 0.00 0.00 3.32
2175 2876 0.731417 GCCTGCAGTTGTAGCATCTG 59.269 55.000 13.81 3.57 41.82 2.90
2179 2880 1.089920 GCAGTTGTAGCATCTGGTGG 58.910 55.000 8.64 0.00 33.34 4.61
2180 2881 1.339055 GCAGTTGTAGCATCTGGTGGA 60.339 52.381 8.64 0.00 33.34 4.02
2181 2882 2.625737 CAGTTGTAGCATCTGGTGGAG 58.374 52.381 0.00 0.00 30.26 3.86
2182 2883 2.027745 CAGTTGTAGCATCTGGTGGAGT 60.028 50.000 0.00 0.00 30.26 3.85
2183 2884 3.195610 CAGTTGTAGCATCTGGTGGAGTA 59.804 47.826 0.00 0.00 30.26 2.59
2184 2885 3.838317 AGTTGTAGCATCTGGTGGAGTAA 59.162 43.478 0.00 0.00 0.00 2.24
2185 2886 4.286032 AGTTGTAGCATCTGGTGGAGTAAA 59.714 41.667 0.00 0.00 0.00 2.01
2186 2887 5.045578 AGTTGTAGCATCTGGTGGAGTAAAT 60.046 40.000 0.00 0.00 0.00 1.40
2187 2888 5.435686 TGTAGCATCTGGTGGAGTAAATT 57.564 39.130 0.00 0.00 0.00 1.82
2188 2889 5.185454 TGTAGCATCTGGTGGAGTAAATTG 58.815 41.667 0.00 0.00 0.00 2.32
2189 2890 3.019564 AGCATCTGGTGGAGTAAATTGC 58.980 45.455 0.00 0.00 0.00 3.56
2190 2891 3.019564 GCATCTGGTGGAGTAAATTGCT 58.980 45.455 0.00 0.00 0.00 3.91
2191 2892 3.065925 GCATCTGGTGGAGTAAATTGCTC 59.934 47.826 2.34 2.34 0.00 4.26
2192 2893 4.264253 CATCTGGTGGAGTAAATTGCTCA 58.736 43.478 12.84 0.00 34.83 4.26
2193 2894 4.365514 TCTGGTGGAGTAAATTGCTCAA 57.634 40.909 12.84 0.00 34.83 3.02
2194 2895 4.724399 TCTGGTGGAGTAAATTGCTCAAA 58.276 39.130 12.84 0.00 34.83 2.69
2195 2896 4.761739 TCTGGTGGAGTAAATTGCTCAAAG 59.238 41.667 12.84 4.78 34.83 2.77
2196 2897 3.255642 TGGTGGAGTAAATTGCTCAAAGC 59.744 43.478 12.84 9.96 42.82 3.51
2197 2898 3.367395 GGTGGAGTAAATTGCTCAAAGCC 60.367 47.826 12.84 5.37 41.51 4.35
2198 2899 3.255642 GTGGAGTAAATTGCTCAAAGCCA 59.744 43.478 12.84 0.00 41.51 4.75
2199 2900 3.255642 TGGAGTAAATTGCTCAAAGCCAC 59.744 43.478 12.84 0.00 41.51 5.01
2200 2901 3.367395 GGAGTAAATTGCTCAAAGCCACC 60.367 47.826 12.84 0.00 41.51 4.61
2201 2902 3.230134 AGTAAATTGCTCAAAGCCACCA 58.770 40.909 0.00 0.00 41.51 4.17
2202 2903 2.531522 AAATTGCTCAAAGCCACCAC 57.468 45.000 0.00 0.00 41.51 4.16
2203 2904 1.412079 AATTGCTCAAAGCCACCACA 58.588 45.000 0.00 0.00 41.51 4.17
2204 2905 1.636148 ATTGCTCAAAGCCACCACAT 58.364 45.000 0.00 0.00 41.51 3.21
2205 2906 1.412079 TTGCTCAAAGCCACCACATT 58.588 45.000 0.00 0.00 41.51 2.71
2206 2907 1.412079 TGCTCAAAGCCACCACATTT 58.588 45.000 0.00 0.00 41.51 2.32
2207 2908 1.068895 TGCTCAAAGCCACCACATTTG 59.931 47.619 0.00 0.00 41.51 2.32
2208 2909 1.069049 GCTCAAAGCCACCACATTTGT 59.931 47.619 0.00 0.00 34.48 2.83
2209 2910 2.746269 CTCAAAGCCACCACATTTGTG 58.254 47.619 3.67 3.67 45.23 3.33
2222 2923 5.741388 CACATTTGTGGCTAGGATACTTC 57.259 43.478 2.69 0.00 43.56 3.01
2223 2924 5.185454 CACATTTGTGGCTAGGATACTTCA 58.815 41.667 2.69 0.00 43.56 3.02
2224 2925 5.647658 CACATTTGTGGCTAGGATACTTCAA 59.352 40.000 2.69 0.00 43.56 2.69
2225 2926 6.150976 CACATTTGTGGCTAGGATACTTCAAA 59.849 38.462 2.69 0.00 43.56 2.69
2226 2927 7.309133 CACATTTGTGGCTAGGATACTTCAAAA 60.309 37.037 2.69 0.00 43.56 2.44
2239 2940 6.861572 GGATACTTCAAAACTACCACTTTTGC 59.138 38.462 0.00 0.00 38.14 3.68
2240 2941 5.914898 ACTTCAAAACTACCACTTTTGCT 57.085 34.783 0.00 0.00 38.14 3.91
2241 2942 8.685838 ATACTTCAAAACTACCACTTTTGCTA 57.314 30.769 0.00 0.00 38.14 3.49
2242 2943 7.399245 ACTTCAAAACTACCACTTTTGCTAA 57.601 32.000 0.00 0.00 38.14 3.09
2243 2944 7.832769 ACTTCAAAACTACCACTTTTGCTAAA 58.167 30.769 0.00 0.00 38.14 1.85
2244 2945 8.308207 ACTTCAAAACTACCACTTTTGCTAAAA 58.692 29.630 0.00 0.00 38.14 1.52
2245 2946 9.145865 CTTCAAAACTACCACTTTTGCTAAAAA 57.854 29.630 0.00 0.00 38.14 1.94
2246 2947 9.660180 TTCAAAACTACCACTTTTGCTAAAAAT 57.340 25.926 0.00 0.00 38.14 1.82
2247 2948 9.308318 TCAAAACTACCACTTTTGCTAAAAATC 57.692 29.630 0.00 0.00 38.14 2.17
2248 2949 9.092876 CAAAACTACCACTTTTGCTAAAAATCA 57.907 29.630 0.00 0.00 34.81 2.57
2249 2950 8.642908 AAACTACCACTTTTGCTAAAAATCAC 57.357 30.769 0.00 0.00 34.81 3.06
2250 2951 7.341445 ACTACCACTTTTGCTAAAAATCACA 57.659 32.000 0.00 0.00 34.81 3.58
2251 2952 7.777095 ACTACCACTTTTGCTAAAAATCACAA 58.223 30.769 0.00 0.00 34.81 3.33
2252 2953 8.254508 ACTACCACTTTTGCTAAAAATCACAAA 58.745 29.630 0.00 0.00 34.81 2.83
2253 2954 7.913674 ACCACTTTTGCTAAAAATCACAAAA 57.086 28.000 0.00 0.00 39.09 2.44
2254 2955 8.329203 ACCACTTTTGCTAAAAATCACAAAAA 57.671 26.923 0.00 0.00 40.38 1.94
2268 2969 3.292159 AAAAACCACCGGCTCCGC 61.292 61.111 0.00 0.00 38.24 5.54
2280 2981 2.494445 CTCCGCGGCATGTGAGTA 59.506 61.111 23.51 0.00 0.00 2.59
2281 2982 1.153647 CTCCGCGGCATGTGAGTAA 60.154 57.895 23.51 0.00 0.00 2.24
2282 2983 1.421410 CTCCGCGGCATGTGAGTAAC 61.421 60.000 23.51 0.00 0.00 2.50
2283 2984 1.739929 CCGCGGCATGTGAGTAACA 60.740 57.895 14.67 0.00 44.79 2.41
2284 2985 1.295357 CCGCGGCATGTGAGTAACAA 61.295 55.000 14.67 0.00 43.61 2.83
2285 2986 0.515127 CGCGGCATGTGAGTAACAAA 59.485 50.000 0.00 0.00 43.61 2.83
2286 2987 1.130373 CGCGGCATGTGAGTAACAAAT 59.870 47.619 0.00 0.00 43.61 2.32
2287 2988 2.785679 GCGGCATGTGAGTAACAAATC 58.214 47.619 0.00 0.00 43.61 2.17
2288 2989 2.787723 GCGGCATGTGAGTAACAAATCG 60.788 50.000 0.00 0.00 43.61 3.34
2289 2990 2.670905 CGGCATGTGAGTAACAAATCGA 59.329 45.455 0.00 0.00 43.61 3.59
2290 2991 3.124466 CGGCATGTGAGTAACAAATCGAA 59.876 43.478 0.00 0.00 43.61 3.71
2291 2992 4.403453 GGCATGTGAGTAACAAATCGAAC 58.597 43.478 0.00 0.00 43.61 3.95
2292 2993 4.154195 GGCATGTGAGTAACAAATCGAACT 59.846 41.667 0.00 0.00 43.61 3.01
2293 2994 5.350365 GGCATGTGAGTAACAAATCGAACTA 59.650 40.000 0.00 0.00 43.61 2.24
2294 2995 6.128391 GGCATGTGAGTAACAAATCGAACTAA 60.128 38.462 0.00 0.00 43.61 2.24
2295 2996 7.414098 GGCATGTGAGTAACAAATCGAACTAAT 60.414 37.037 0.00 0.00 43.61 1.73
2296 2997 7.962918 GCATGTGAGTAACAAATCGAACTAATT 59.037 33.333 0.00 0.00 43.61 1.40
2297 2998 9.478019 CATGTGAGTAACAAATCGAACTAATTC 57.522 33.333 0.00 0.00 43.61 2.17
2298 2999 8.596271 TGTGAGTAACAAATCGAACTAATTCA 57.404 30.769 0.00 0.00 35.24 2.57
2299 3000 9.047371 TGTGAGTAACAAATCGAACTAATTCAA 57.953 29.630 0.00 0.00 35.24 2.69
2300 3001 9.872757 GTGAGTAACAAATCGAACTAATTCAAA 57.127 29.630 0.00 0.00 34.14 2.69
2306 3007 9.450807 AACAAATCGAACTAATTCAAAACTGAG 57.549 29.630 0.00 0.00 34.14 3.35
2307 3008 7.591426 ACAAATCGAACTAATTCAAAACTGAGC 59.409 33.333 0.00 0.00 34.14 4.26
2308 3009 5.607119 TCGAACTAATTCAAAACTGAGCC 57.393 39.130 0.00 0.00 34.14 4.70
2309 3010 4.151689 TCGAACTAATTCAAAACTGAGCCG 59.848 41.667 0.00 0.00 34.14 5.52
2310 3011 3.831715 ACTAATTCAAAACTGAGCCGC 57.168 42.857 0.00 0.00 0.00 6.53
2311 3012 2.159627 ACTAATTCAAAACTGAGCCGCG 59.840 45.455 0.00 0.00 0.00 6.46
2312 3013 0.951558 AATTCAAAACTGAGCCGCGT 59.048 45.000 4.92 0.00 0.00 6.01
2313 3014 0.517316 ATTCAAAACTGAGCCGCGTC 59.483 50.000 4.92 0.00 0.00 5.19
2314 3015 0.531974 TTCAAAACTGAGCCGCGTCT 60.532 50.000 4.92 0.00 0.00 4.18
2315 3016 0.315886 TCAAAACTGAGCCGCGTCTA 59.684 50.000 4.92 0.00 0.00 2.59
2316 3017 1.144969 CAAAACTGAGCCGCGTCTAA 58.855 50.000 4.92 0.00 0.00 2.10
2317 3018 1.136336 CAAAACTGAGCCGCGTCTAAC 60.136 52.381 4.92 0.00 0.00 2.34
2318 3019 0.032952 AAACTGAGCCGCGTCTAACA 59.967 50.000 4.92 0.00 0.00 2.41
2319 3020 0.388649 AACTGAGCCGCGTCTAACAG 60.389 55.000 4.92 4.68 0.00 3.16
2320 3021 2.126071 TGAGCCGCGTCTAACAGC 60.126 61.111 4.92 0.00 0.00 4.40
2321 3022 2.126071 GAGCCGCGTCTAACAGCA 60.126 61.111 4.92 0.00 0.00 4.41
2322 3023 1.736645 GAGCCGCGTCTAACAGCAA 60.737 57.895 4.92 0.00 0.00 3.91
2323 3024 1.289109 GAGCCGCGTCTAACAGCAAA 61.289 55.000 4.92 0.00 0.00 3.68
2324 3025 0.882927 AGCCGCGTCTAACAGCAAAA 60.883 50.000 4.92 0.00 0.00 2.44
2325 3026 0.724785 GCCGCGTCTAACAGCAAAAC 60.725 55.000 4.92 0.00 0.00 2.43
2326 3027 0.865769 CCGCGTCTAACAGCAAAACT 59.134 50.000 4.92 0.00 0.00 2.66
2336 3037 2.414750 AGCAAAACTGACGGGTTGG 58.585 52.632 0.00 0.00 0.00 3.77
2337 3038 1.299850 GCAAAACTGACGGGTTGGC 60.300 57.895 0.00 0.00 0.00 4.52
2338 3039 1.362355 CAAAACTGACGGGTTGGCC 59.638 57.895 0.00 0.00 0.00 5.36
2348 3049 2.117206 GGTTGGCCCCACATGTCA 59.883 61.111 0.00 0.00 0.00 3.58
2349 3050 1.978617 GGTTGGCCCCACATGTCAG 60.979 63.158 0.00 0.00 0.00 3.51
2350 3051 1.978617 GTTGGCCCCACATGTCAGG 60.979 63.158 0.00 0.00 0.00 3.86
2351 3052 3.884704 TTGGCCCCACATGTCAGGC 62.885 63.158 22.32 22.32 44.99 4.85
2352 3053 4.052518 GGCCCCACATGTCAGGCT 62.053 66.667 26.86 0.00 45.07 4.58
2353 3054 2.753043 GCCCCACATGTCAGGCTG 60.753 66.667 22.88 8.58 42.34 4.85
2354 3055 3.080641 CCCCACATGTCAGGCTGA 58.919 61.111 14.43 14.43 0.00 4.26
2362 3063 4.730487 GTCAGGCTGACTTGGCAT 57.270 55.556 34.49 0.00 43.73 4.40
2363 3064 2.177950 GTCAGGCTGACTTGGCATG 58.822 57.895 34.49 0.00 43.73 4.06
2364 3065 1.676635 TCAGGCTGACTTGGCATGC 60.677 57.895 14.43 9.90 40.62 4.06
2365 3066 2.362120 AGGCTGACTTGGCATGCC 60.362 61.111 30.54 30.54 43.52 4.40
2366 3067 2.362120 GGCTGACTTGGCATGCCT 60.362 61.111 35.53 17.85 40.36 4.75
2367 3068 2.707849 GGCTGACTTGGCATGCCTG 61.708 63.158 35.53 28.32 40.36 4.85
2368 3069 1.975407 GCTGACTTGGCATGCCTGT 60.975 57.895 35.53 31.05 36.94 4.00
2369 3070 1.880894 CTGACTTGGCATGCCTGTG 59.119 57.895 35.53 25.69 36.94 3.66
2370 3071 0.892358 CTGACTTGGCATGCCTGTGT 60.892 55.000 35.53 28.39 36.94 3.72
2371 3072 1.174078 TGACTTGGCATGCCTGTGTG 61.174 55.000 35.53 21.81 36.94 3.82
2372 3073 1.870055 GACTTGGCATGCCTGTGTGG 61.870 60.000 35.53 20.14 36.94 4.17
2373 3074 1.604308 CTTGGCATGCCTGTGTGGA 60.604 57.895 35.53 12.62 38.35 4.02
2374 3075 1.870055 CTTGGCATGCCTGTGTGGAC 61.870 60.000 35.53 8.06 38.35 4.02
2375 3076 2.282391 GGCATGCCTGTGTGGACA 60.282 61.111 29.98 0.00 38.35 4.02
2376 3077 1.679977 GGCATGCCTGTGTGGACAT 60.680 57.895 29.98 0.00 38.35 3.06
2377 3078 1.252904 GGCATGCCTGTGTGGACATT 61.253 55.000 29.98 0.00 38.35 2.71
2378 3079 1.462616 GCATGCCTGTGTGGACATTA 58.537 50.000 6.36 0.00 38.35 1.90
2379 3080 2.026641 GCATGCCTGTGTGGACATTAT 58.973 47.619 6.36 0.00 38.35 1.28
2380 3081 2.223641 GCATGCCTGTGTGGACATTATG 60.224 50.000 6.36 0.00 38.35 1.90
2381 3082 1.462616 TGCCTGTGTGGACATTATGC 58.537 50.000 0.00 0.00 38.35 3.14
2382 3083 1.004628 TGCCTGTGTGGACATTATGCT 59.995 47.619 0.00 0.00 38.35 3.79
2383 3084 1.402968 GCCTGTGTGGACATTATGCTG 59.597 52.381 0.00 0.00 38.35 4.41
2384 3085 2.940971 GCCTGTGTGGACATTATGCTGA 60.941 50.000 0.00 0.00 38.35 4.26
2385 3086 2.941064 CCTGTGTGGACATTATGCTGAG 59.059 50.000 0.00 0.00 38.35 3.35
2386 3087 2.941064 CTGTGTGGACATTATGCTGAGG 59.059 50.000 0.00 0.00 0.00 3.86
2387 3088 2.305635 TGTGTGGACATTATGCTGAGGT 59.694 45.455 0.00 0.00 0.00 3.85
2388 3089 2.679837 GTGTGGACATTATGCTGAGGTG 59.320 50.000 0.00 0.00 0.00 4.00
2389 3090 2.292267 GTGGACATTATGCTGAGGTGG 58.708 52.381 0.00 0.00 0.00 4.61
2390 3091 2.092968 GTGGACATTATGCTGAGGTGGA 60.093 50.000 0.00 0.00 0.00 4.02
2391 3092 2.575735 TGGACATTATGCTGAGGTGGAA 59.424 45.455 0.00 0.00 0.00 3.53
2392 3093 3.209410 GGACATTATGCTGAGGTGGAAG 58.791 50.000 0.00 0.00 0.00 3.46
2393 3094 3.209410 GACATTATGCTGAGGTGGAAGG 58.791 50.000 0.00 0.00 0.00 3.46
2394 3095 2.578021 ACATTATGCTGAGGTGGAAGGT 59.422 45.455 0.00 0.00 0.00 3.50
2395 3096 2.787473 TTATGCTGAGGTGGAAGGTG 57.213 50.000 0.00 0.00 0.00 4.00
2396 3097 1.951209 TATGCTGAGGTGGAAGGTGA 58.049 50.000 0.00 0.00 0.00 4.02
2397 3098 0.326264 ATGCTGAGGTGGAAGGTGAC 59.674 55.000 0.00 0.00 0.00 3.67
2398 3099 1.003233 GCTGAGGTGGAAGGTGACC 60.003 63.158 0.00 0.00 0.00 4.02
2399 3100 1.679898 CTGAGGTGGAAGGTGACCC 59.320 63.158 0.00 0.00 32.03 4.46
2400 3101 1.842381 CTGAGGTGGAAGGTGACCCC 61.842 65.000 0.00 0.00 32.03 4.95
2401 3102 1.846124 GAGGTGGAAGGTGACCCCA 60.846 63.158 0.00 0.00 34.66 4.96
2410 3111 2.032681 GTGACCCCACCTGTCAGC 59.967 66.667 0.00 0.00 42.99 4.26
2411 3112 3.249189 TGACCCCACCTGTCAGCC 61.249 66.667 0.00 0.00 37.80 4.85
2412 3113 2.930562 GACCCCACCTGTCAGCCT 60.931 66.667 0.00 0.00 32.91 4.58
2413 3114 2.930562 ACCCCACCTGTCAGCCTC 60.931 66.667 0.00 0.00 0.00 4.70
2414 3115 2.930019 CCCCACCTGTCAGCCTCA 60.930 66.667 0.00 0.00 0.00 3.86
2415 3116 2.348998 CCCACCTGTCAGCCTCAC 59.651 66.667 0.00 0.00 0.00 3.51
2416 3117 2.519622 CCCACCTGTCAGCCTCACA 61.520 63.158 0.00 0.00 0.00 3.58
2417 3118 1.681666 CCACCTGTCAGCCTCACAT 59.318 57.895 0.00 0.00 0.00 3.21
2418 3119 0.904649 CCACCTGTCAGCCTCACATA 59.095 55.000 0.00 0.00 0.00 2.29
2419 3120 1.487976 CCACCTGTCAGCCTCACATAT 59.512 52.381 0.00 0.00 0.00 1.78
2420 3121 2.484417 CCACCTGTCAGCCTCACATATC 60.484 54.545 0.00 0.00 0.00 1.63
2421 3122 1.765314 ACCTGTCAGCCTCACATATCC 59.235 52.381 0.00 0.00 0.00 2.59
2422 3123 2.045524 CCTGTCAGCCTCACATATCCT 58.954 52.381 0.00 0.00 0.00 3.24
2423 3124 2.437281 CCTGTCAGCCTCACATATCCTT 59.563 50.000 0.00 0.00 0.00 3.36
2424 3125 3.118112 CCTGTCAGCCTCACATATCCTTT 60.118 47.826 0.00 0.00 0.00 3.11
2425 3126 4.101585 CCTGTCAGCCTCACATATCCTTTA 59.898 45.833 0.00 0.00 0.00 1.85
2426 3127 5.396772 CCTGTCAGCCTCACATATCCTTTAA 60.397 44.000 0.00 0.00 0.00 1.52
2427 3128 5.428253 TGTCAGCCTCACATATCCTTTAAC 58.572 41.667 0.00 0.00 0.00 2.01
2428 3129 4.816925 GTCAGCCTCACATATCCTTTAACC 59.183 45.833 0.00 0.00 0.00 2.85
2429 3130 4.721776 TCAGCCTCACATATCCTTTAACCT 59.278 41.667 0.00 0.00 0.00 3.50
2430 3131 5.059833 CAGCCTCACATATCCTTTAACCTC 58.940 45.833 0.00 0.00 0.00 3.85
2431 3132 4.971924 AGCCTCACATATCCTTTAACCTCT 59.028 41.667 0.00 0.00 0.00 3.69
2432 3133 5.430089 AGCCTCACATATCCTTTAACCTCTT 59.570 40.000 0.00 0.00 0.00 2.85
2433 3134 6.069381 AGCCTCACATATCCTTTAACCTCTTT 60.069 38.462 0.00 0.00 0.00 2.52
2434 3135 6.603599 GCCTCACATATCCTTTAACCTCTTTT 59.396 38.462 0.00 0.00 0.00 2.27
2435 3136 7.122799 GCCTCACATATCCTTTAACCTCTTTTT 59.877 37.037 0.00 0.00 0.00 1.94
2436 3137 9.681062 CCTCACATATCCTTTAACCTCTTTTTA 57.319 33.333 0.00 0.00 0.00 1.52
2463 3164 8.862091 TTTTCTTATTCCTTCTATCTCTCCCT 57.138 34.615 0.00 0.00 0.00 4.20
2464 3165 8.485578 TTTCTTATTCCTTCTATCTCTCCCTC 57.514 38.462 0.00 0.00 0.00 4.30
2465 3166 7.415004 TCTTATTCCTTCTATCTCTCCCTCT 57.585 40.000 0.00 0.00 0.00 3.69
2466 3167 7.466804 TCTTATTCCTTCTATCTCTCCCTCTC 58.533 42.308 0.00 0.00 0.00 3.20
2467 3168 5.948481 ATTCCTTCTATCTCTCCCTCTCT 57.052 43.478 0.00 0.00 0.00 3.10
2468 3169 4.722526 TCCTTCTATCTCTCCCTCTCTG 57.277 50.000 0.00 0.00 0.00 3.35
2469 3170 3.157087 CCTTCTATCTCTCCCTCTCTGC 58.843 54.545 0.00 0.00 0.00 4.26
2470 3171 3.436325 CCTTCTATCTCTCCCTCTCTGCA 60.436 52.174 0.00 0.00 0.00 4.41
2471 3172 3.961484 TCTATCTCTCCCTCTCTGCAA 57.039 47.619 0.00 0.00 0.00 4.08
2472 3173 4.256983 TCTATCTCTCCCTCTCTGCAAA 57.743 45.455 0.00 0.00 0.00 3.68
2473 3174 4.214310 TCTATCTCTCCCTCTCTGCAAAG 58.786 47.826 0.00 0.00 0.00 2.77
2474 3175 1.566211 TCTCTCCCTCTCTGCAAAGG 58.434 55.000 3.04 3.04 0.00 3.11
2475 3176 1.203237 TCTCTCCCTCTCTGCAAAGGT 60.203 52.381 8.26 0.00 0.00 3.50
2476 3177 0.979665 TCTCCCTCTCTGCAAAGGTG 59.020 55.000 8.26 2.52 0.00 4.00
2492 3193 3.329300 GTGCTCACTCCACCATTGT 57.671 52.632 0.00 0.00 0.00 2.71
2493 3194 1.160137 GTGCTCACTCCACCATTGTC 58.840 55.000 0.00 0.00 0.00 3.18
2494 3195 0.320683 TGCTCACTCCACCATTGTCG 60.321 55.000 0.00 0.00 0.00 4.35
2495 3196 1.639298 GCTCACTCCACCATTGTCGC 61.639 60.000 0.00 0.00 0.00 5.19
2496 3197 1.003839 TCACTCCACCATTGTCGCC 60.004 57.895 0.00 0.00 0.00 5.54
2497 3198 2.047274 ACTCCACCATTGTCGCCG 60.047 61.111 0.00 0.00 0.00 6.46
2498 3199 2.819595 CTCCACCATTGTCGCCGG 60.820 66.667 0.00 0.00 0.00 6.13
2501 3202 3.803082 CACCATTGTCGCCGGCAG 61.803 66.667 28.98 19.33 0.00 4.85
2518 3219 3.077556 GGCAGAGCCCCTCGAGAA 61.078 66.667 15.71 0.00 44.06 2.87
2519 3220 2.498726 GCAGAGCCCCTCGAGAAG 59.501 66.667 15.71 5.59 35.36 2.85
2520 3221 2.498726 CAGAGCCCCTCGAGAAGC 59.501 66.667 15.71 16.02 35.36 3.86
2521 3222 2.762043 AGAGCCCCTCGAGAAGCC 60.762 66.667 15.71 9.95 35.36 4.35
2522 3223 3.855853 GAGCCCCTCGAGAAGCCC 61.856 72.222 15.71 2.95 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.134202 TCTACCATTGTGAGTGTAGTGTG 57.866 43.478 0.00 0.00 33.91 3.82
13 14 3.637229 CGTCCCTATCTACCATTGTGAGT 59.363 47.826 0.00 0.00 0.00 3.41
28 29 2.672651 TCGGCGACAACGTCCCTA 60.673 61.111 4.99 0.00 41.37 3.53
53 54 2.048603 GGGAGATTGTGGTGGCAGC 61.049 63.158 10.30 10.30 0.00 5.25
64 65 1.566231 GAACTGGGGATGTGGGAGATT 59.434 52.381 0.00 0.00 0.00 2.40
114 115 3.576356 GTGATGGGCATGACGGCG 61.576 66.667 4.80 4.80 42.43 6.46
124 125 1.524621 GGTGCTCGATGGTGATGGG 60.525 63.158 0.00 0.00 0.00 4.00
141 142 1.152567 AGAGAGGGAGATGGCGAGG 60.153 63.158 0.00 0.00 0.00 4.63
143 144 0.753479 GTGAGAGAGGGAGATGGCGA 60.753 60.000 0.00 0.00 0.00 5.54
146 147 2.309613 CAGAGTGAGAGAGGGAGATGG 58.690 57.143 0.00 0.00 0.00 3.51
187 188 2.208132 TATCCCCTCTCTGATCTCGC 57.792 55.000 0.00 0.00 0.00 5.03
194 195 2.496679 TTCCCCTTATCCCCTCTCTG 57.503 55.000 0.00 0.00 0.00 3.35
234 235 4.864806 GTCATCACTTAGCGAATGTTCTCA 59.135 41.667 0.00 0.00 0.00 3.27
235 236 5.005203 CAGTCATCACTTAGCGAATGTTCTC 59.995 44.000 0.00 0.00 0.00 2.87
236 237 4.867047 CAGTCATCACTTAGCGAATGTTCT 59.133 41.667 0.00 0.00 0.00 3.01
237 238 4.493220 GCAGTCATCACTTAGCGAATGTTC 60.493 45.833 0.00 0.00 0.00 3.18
238 239 3.372206 GCAGTCATCACTTAGCGAATGTT 59.628 43.478 0.00 0.00 0.00 2.71
239 240 2.932614 GCAGTCATCACTTAGCGAATGT 59.067 45.455 0.00 0.00 0.00 2.71
240 241 2.034254 CGCAGTCATCACTTAGCGAATG 60.034 50.000 0.00 0.00 44.10 2.67
241 242 2.196749 CGCAGTCATCACTTAGCGAAT 58.803 47.619 0.00 0.00 44.10 3.34
243 244 0.802222 GCGCAGTCATCACTTAGCGA 60.802 55.000 5.65 0.00 44.10 4.93
244 245 1.633171 GCGCAGTCATCACTTAGCG 59.367 57.895 0.30 0.00 44.15 4.26
245 246 0.802222 TCGCGCAGTCATCACTTAGC 60.802 55.000 8.75 0.00 31.96 3.09
246 247 1.321743 GTTCGCGCAGTCATCACTTAG 59.678 52.381 8.75 0.00 0.00 2.18
253 564 0.370273 GAAATCGTTCGCGCAGTCAT 59.630 50.000 8.75 0.00 41.05 3.06
261 572 2.930040 TCATCTTCTGGAAATCGTTCGC 59.070 45.455 0.00 0.00 34.28 4.70
273 584 0.325933 TGGTGCCAGGTCATCTTCTG 59.674 55.000 0.00 0.00 0.00 3.02
285 596 4.254709 AGCGCAACTCTGGTGCCA 62.255 61.111 11.47 0.00 42.55 4.92
302 613 1.340399 ATCTTGCTGCCCGGATCTGA 61.340 55.000 0.73 0.00 0.00 3.27
304 615 1.449353 GATCTTGCTGCCCGGATCT 59.551 57.895 0.73 0.00 33.80 2.75
576 904 6.790285 TCGTACCAAATTTTACTTCTCCAC 57.210 37.500 0.00 0.00 0.00 4.02
882 1251 1.576451 TAGGCGCACGTACGAGAACA 61.576 55.000 24.41 0.00 34.06 3.18
939 1310 1.949257 GCACTTAACTTGCCGTGCT 59.051 52.632 7.74 0.00 46.70 4.40
1137 1537 0.173029 TGTTGTGCTTGTGCTTGTGG 59.827 50.000 0.00 0.00 40.48 4.17
1155 1555 2.844451 CGTGGTGCAGTGGGGTTTG 61.844 63.158 0.00 0.00 0.00 2.93
1198 1619 4.415150 CATCACGCCTGGGGTGCT 62.415 66.667 32.22 23.58 44.40 4.40
1272 1693 1.687660 TCACCGTTGCTGTGGTACTTA 59.312 47.619 0.00 0.00 36.50 2.24
1709 2144 4.189231 CCCCACAGAGGTAGTTTTATTCG 58.811 47.826 0.00 0.00 34.66 3.34
1741 2181 5.462405 GCGTGGATCTTAGTACAAGATAGG 58.538 45.833 15.87 10.65 37.14 2.57
1742 2182 5.147865 CGCGTGGATCTTAGTACAAGATAG 58.852 45.833 15.87 11.02 37.14 2.08
1771 2218 1.729838 GAGACTGACACCGACACGC 60.730 63.158 0.00 0.00 0.00 5.34
1801 2248 9.099454 GGAGTATATTCCACAACAGAAAACTAG 57.901 37.037 9.33 0.00 37.20 2.57
1802 2249 8.044908 GGGAGTATATTCCACAACAGAAAACTA 58.955 37.037 15.53 0.00 39.09 2.24
1803 2250 6.884836 GGGAGTATATTCCACAACAGAAAACT 59.115 38.462 15.53 0.00 39.09 2.66
1824 2271 3.630769 GGCCTATTTAAAAACGGAGGGAG 59.369 47.826 0.00 0.00 0.00 4.30
1825 2272 3.010361 TGGCCTATTTAAAAACGGAGGGA 59.990 43.478 3.32 0.00 0.00 4.20
1826 2273 3.358118 TGGCCTATTTAAAAACGGAGGG 58.642 45.455 3.32 0.00 0.00 4.30
1827 2274 4.014406 ACTGGCCTATTTAAAAACGGAGG 58.986 43.478 3.32 0.00 0.00 4.30
1828 2275 5.878669 AGTACTGGCCTATTTAAAAACGGAG 59.121 40.000 3.32 0.00 0.00 4.63
1829 2276 5.807909 AGTACTGGCCTATTTAAAAACGGA 58.192 37.500 3.32 0.00 0.00 4.69
1830 2277 6.259387 CCTAGTACTGGCCTATTTAAAAACGG 59.741 42.308 5.39 0.00 0.00 4.44
1831 2278 6.238293 GCCTAGTACTGGCCTATTTAAAAACG 60.238 42.308 19.74 0.00 44.32 3.60
1832 2279 7.024340 GCCTAGTACTGGCCTATTTAAAAAC 57.976 40.000 19.74 0.00 44.32 2.43
1893 2340 1.521681 GTTCGAATCGGAGGGCTGG 60.522 63.158 0.00 0.00 0.00 4.85
1898 2345 1.001706 TGATAGCGTTCGAATCGGAGG 60.002 52.381 17.51 0.00 0.00 4.30
1912 2359 7.437862 AGAAGAAGAAATCTGACGATTGATAGC 59.562 37.037 0.00 0.00 39.72 2.97
1921 2368 6.648725 AGGAAGAAAGAAGAAGAAATCTGACG 59.351 38.462 0.00 0.00 38.79 4.35
1924 2371 6.870965 TCGAGGAAGAAAGAAGAAGAAATCTG 59.129 38.462 0.00 0.00 38.79 2.90
1988 2436 1.227674 GGATTCCAGCTAGCCGGTG 60.228 63.158 16.64 6.18 40.77 4.94
1989 2437 2.444256 GGGATTCCAGCTAGCCGGT 61.444 63.158 16.64 0.00 0.00 5.28
1990 2438 2.427753 GGGATTCCAGCTAGCCGG 59.572 66.667 11.03 11.03 0.00 6.13
1991 2439 2.427753 GGGGATTCCAGCTAGCCG 59.572 66.667 12.13 0.00 35.00 5.52
1992 2440 2.839836 GGGGGATTCCAGCTAGCC 59.160 66.667 12.13 0.00 37.22 3.93
2012 2460 2.263852 CGCTCTCTGCTGCAAGGA 59.736 61.111 3.02 3.98 40.11 3.36
2013 2461 3.497932 GCGCTCTCTGCTGCAAGG 61.498 66.667 3.02 0.00 39.61 3.61
2014 2462 3.497932 GGCGCTCTCTGCTGCAAG 61.498 66.667 7.64 4.73 40.85 4.01
2032 2480 4.678743 GGGGTGGACAAGTGGGCC 62.679 72.222 0.00 0.00 0.00 5.80
2033 2481 3.897122 TGGGGTGGACAAGTGGGC 61.897 66.667 0.00 0.00 0.00 5.36
2034 2482 2.115266 GTGGGGTGGACAAGTGGG 59.885 66.667 0.00 0.00 0.00 4.61
2035 2483 2.115266 GGTGGGGTGGACAAGTGG 59.885 66.667 0.00 0.00 0.00 4.00
2036 2484 1.528309 GTGGTGGGGTGGACAAGTG 60.528 63.158 0.00 0.00 0.00 3.16
2037 2485 1.696314 AGTGGTGGGGTGGACAAGT 60.696 57.895 0.00 0.00 0.00 3.16
2038 2486 1.228245 CAGTGGTGGGGTGGACAAG 60.228 63.158 0.00 0.00 0.00 3.16
2039 2487 2.923035 CAGTGGTGGGGTGGACAA 59.077 61.111 0.00 0.00 0.00 3.18
2040 2488 3.884774 GCAGTGGTGGGGTGGACA 61.885 66.667 0.00 0.00 0.00 4.02
2041 2489 4.660938 GGCAGTGGTGGGGTGGAC 62.661 72.222 0.00 0.00 0.00 4.02
2043 2491 3.944250 GATGGCAGTGGTGGGGTGG 62.944 68.421 0.00 0.00 0.00 4.61
2044 2492 2.361610 GATGGCAGTGGTGGGGTG 60.362 66.667 0.00 0.00 0.00 4.61
2045 2493 2.532715 AGATGGCAGTGGTGGGGT 60.533 61.111 0.00 0.00 0.00 4.95
2046 2494 2.273449 GAGATGGCAGTGGTGGGG 59.727 66.667 0.00 0.00 0.00 4.96
2047 2495 2.273449 GGAGATGGCAGTGGTGGG 59.727 66.667 0.00 0.00 0.00 4.61
2051 2750 4.181010 CGGGGGAGATGGCAGTGG 62.181 72.222 0.00 0.00 0.00 4.00
2167 2868 4.080356 AGCAATTTACTCCACCAGATGCTA 60.080 41.667 0.00 0.00 39.61 3.49
2175 2876 3.367395 GGCTTTGAGCAATTTACTCCACC 60.367 47.826 2.04 0.00 44.75 4.61
2179 2880 3.255642 TGGTGGCTTTGAGCAATTTACTC 59.744 43.478 2.04 0.00 44.75 2.59
2180 2881 3.005791 GTGGTGGCTTTGAGCAATTTACT 59.994 43.478 2.04 0.00 44.75 2.24
2181 2882 3.243704 TGTGGTGGCTTTGAGCAATTTAC 60.244 43.478 2.04 0.00 44.75 2.01
2182 2883 2.961741 TGTGGTGGCTTTGAGCAATTTA 59.038 40.909 2.04 0.00 44.75 1.40
2183 2884 1.761784 TGTGGTGGCTTTGAGCAATTT 59.238 42.857 2.04 0.00 44.75 1.82
2184 2885 1.412079 TGTGGTGGCTTTGAGCAATT 58.588 45.000 2.04 0.00 44.75 2.32
2185 2886 1.636148 ATGTGGTGGCTTTGAGCAAT 58.364 45.000 2.04 0.00 44.75 3.56
2186 2887 1.412079 AATGTGGTGGCTTTGAGCAA 58.588 45.000 2.04 0.00 44.75 3.91
2187 2888 1.068895 CAAATGTGGTGGCTTTGAGCA 59.931 47.619 2.04 0.00 44.75 4.26
2188 2889 1.069049 ACAAATGTGGTGGCTTTGAGC 59.931 47.619 2.18 0.00 41.46 4.26
2189 2890 2.746269 CACAAATGTGGTGGCTTTGAG 58.254 47.619 5.63 0.00 42.10 3.02
2190 2891 2.886862 CACAAATGTGGTGGCTTTGA 57.113 45.000 5.63 0.00 42.10 2.69
2200 2901 5.185454 TGAAGTATCCTAGCCACAAATGTG 58.815 41.667 6.57 6.57 45.23 3.21
2201 2902 5.435686 TGAAGTATCCTAGCCACAAATGT 57.564 39.130 0.00 0.00 0.00 2.71
2202 2903 6.757897 TTTGAAGTATCCTAGCCACAAATG 57.242 37.500 0.00 0.00 0.00 2.32
2203 2904 6.948309 AGTTTTGAAGTATCCTAGCCACAAAT 59.052 34.615 0.00 0.00 0.00 2.32
2204 2905 6.303839 AGTTTTGAAGTATCCTAGCCACAAA 58.696 36.000 0.00 0.00 0.00 2.83
2205 2906 5.876357 AGTTTTGAAGTATCCTAGCCACAA 58.124 37.500 0.00 0.00 0.00 3.33
2206 2907 5.499004 AGTTTTGAAGTATCCTAGCCACA 57.501 39.130 0.00 0.00 0.00 4.17
2207 2908 5.816258 GGTAGTTTTGAAGTATCCTAGCCAC 59.184 44.000 0.00 0.00 0.00 5.01
2208 2909 5.486063 TGGTAGTTTTGAAGTATCCTAGCCA 59.514 40.000 0.00 0.00 0.00 4.75
2209 2910 5.816258 GTGGTAGTTTTGAAGTATCCTAGCC 59.184 44.000 0.00 0.00 0.00 3.93
2210 2911 6.641474 AGTGGTAGTTTTGAAGTATCCTAGC 58.359 40.000 0.00 0.00 0.00 3.42
2211 2912 9.503399 AAAAGTGGTAGTTTTGAAGTATCCTAG 57.497 33.333 0.00 0.00 30.18 3.02
2212 2913 9.280174 CAAAAGTGGTAGTTTTGAAGTATCCTA 57.720 33.333 13.80 0.00 46.26 2.94
2213 2914 7.255486 GCAAAAGTGGTAGTTTTGAAGTATCCT 60.255 37.037 20.23 0.00 46.26 3.24
2214 2915 6.861572 GCAAAAGTGGTAGTTTTGAAGTATCC 59.138 38.462 20.23 3.21 46.26 2.59
2215 2916 7.649057 AGCAAAAGTGGTAGTTTTGAAGTATC 58.351 34.615 20.23 6.48 46.26 2.24
2216 2917 7.582667 AGCAAAAGTGGTAGTTTTGAAGTAT 57.417 32.000 20.23 3.54 46.26 2.12
2217 2918 8.508883 TTAGCAAAAGTGGTAGTTTTGAAGTA 57.491 30.769 20.23 9.14 46.26 2.24
2218 2919 5.914898 AGCAAAAGTGGTAGTTTTGAAGT 57.085 34.783 20.23 6.20 46.26 3.01
2219 2920 8.696410 TTTTAGCAAAAGTGGTAGTTTTGAAG 57.304 30.769 20.23 1.39 46.26 3.02
2220 2921 9.660180 ATTTTTAGCAAAAGTGGTAGTTTTGAA 57.340 25.926 20.23 9.40 46.26 2.69
2221 2922 9.308318 GATTTTTAGCAAAAGTGGTAGTTTTGA 57.692 29.630 20.23 3.61 46.26 2.69
2222 2923 9.092876 TGATTTTTAGCAAAAGTGGTAGTTTTG 57.907 29.630 14.42 14.42 46.16 2.44
2223 2924 9.093970 GTGATTTTTAGCAAAAGTGGTAGTTTT 57.906 29.630 0.00 0.00 38.87 2.43
2224 2925 8.254508 TGTGATTTTTAGCAAAAGTGGTAGTTT 58.745 29.630 0.00 0.00 38.87 2.66
2225 2926 7.777095 TGTGATTTTTAGCAAAAGTGGTAGTT 58.223 30.769 0.00 0.00 38.87 2.24
2226 2927 7.341445 TGTGATTTTTAGCAAAAGTGGTAGT 57.659 32.000 0.00 0.00 38.87 2.73
2227 2928 8.641499 TTTGTGATTTTTAGCAAAAGTGGTAG 57.359 30.769 0.00 0.00 38.87 3.18
2228 2929 9.436957 TTTTTGTGATTTTTAGCAAAAGTGGTA 57.563 25.926 0.00 0.00 40.42 3.25
2229 2930 7.913674 TTTTGTGATTTTTAGCAAAAGTGGT 57.086 28.000 0.00 0.00 36.35 4.16
2263 2964 1.153647 TTACTCACATGCCGCGGAG 60.154 57.895 33.48 19.09 0.00 4.63
2264 2965 1.447140 GTTACTCACATGCCGCGGA 60.447 57.895 33.48 15.19 0.00 5.54
2265 2966 1.295357 TTGTTACTCACATGCCGCGG 61.295 55.000 24.05 24.05 34.43 6.46
2266 2967 0.515127 TTTGTTACTCACATGCCGCG 59.485 50.000 0.00 0.00 34.43 6.46
2267 2968 2.785679 GATTTGTTACTCACATGCCGC 58.214 47.619 0.00 0.00 34.43 6.53
2268 2969 2.670905 TCGATTTGTTACTCACATGCCG 59.329 45.455 0.00 0.00 34.43 5.69
2269 2970 4.154195 AGTTCGATTTGTTACTCACATGCC 59.846 41.667 0.00 0.00 34.43 4.40
2270 2971 5.283060 AGTTCGATTTGTTACTCACATGC 57.717 39.130 0.00 0.00 34.43 4.06
2271 2972 9.478019 GAATTAGTTCGATTTGTTACTCACATG 57.522 33.333 0.00 0.00 34.43 3.21
2272 2973 9.214957 TGAATTAGTTCGATTTGTTACTCACAT 57.785 29.630 0.00 0.00 37.15 3.21
2273 2974 8.596271 TGAATTAGTTCGATTTGTTACTCACA 57.404 30.769 0.00 0.00 37.15 3.58
2274 2975 9.872757 TTTGAATTAGTTCGATTTGTTACTCAC 57.127 29.630 0.00 0.00 37.15 3.51
2280 2981 9.450807 CTCAGTTTTGAATTAGTTCGATTTGTT 57.549 29.630 0.00 0.00 37.15 2.83
2281 2982 7.591426 GCTCAGTTTTGAATTAGTTCGATTTGT 59.409 33.333 0.00 0.00 37.15 2.83
2282 2983 7.061094 GGCTCAGTTTTGAATTAGTTCGATTTG 59.939 37.037 0.00 0.00 37.15 2.32
2283 2984 7.084486 GGCTCAGTTTTGAATTAGTTCGATTT 58.916 34.615 0.00 0.00 37.15 2.17
2284 2985 6.612306 GGCTCAGTTTTGAATTAGTTCGATT 58.388 36.000 0.00 0.00 37.15 3.34
2285 2986 5.163854 CGGCTCAGTTTTGAATTAGTTCGAT 60.164 40.000 0.00 0.00 37.15 3.59
2286 2987 4.151689 CGGCTCAGTTTTGAATTAGTTCGA 59.848 41.667 0.00 0.00 37.15 3.71
2287 2988 4.394795 CGGCTCAGTTTTGAATTAGTTCG 58.605 43.478 0.00 0.00 37.15 3.95
2288 2989 4.159120 GCGGCTCAGTTTTGAATTAGTTC 58.841 43.478 0.00 0.00 31.69 3.01
2289 2990 3.364964 CGCGGCTCAGTTTTGAATTAGTT 60.365 43.478 0.00 0.00 31.69 2.24
2290 2991 2.159627 CGCGGCTCAGTTTTGAATTAGT 59.840 45.455 0.00 0.00 31.69 2.24
2291 2992 2.159627 ACGCGGCTCAGTTTTGAATTAG 59.840 45.455 12.47 0.00 31.69 1.73
2292 2993 2.147958 ACGCGGCTCAGTTTTGAATTA 58.852 42.857 12.47 0.00 31.69 1.40
2293 2994 0.951558 ACGCGGCTCAGTTTTGAATT 59.048 45.000 12.47 0.00 31.69 2.17
2294 2995 0.517316 GACGCGGCTCAGTTTTGAAT 59.483 50.000 12.47 0.00 31.69 2.57
2295 2996 0.531974 AGACGCGGCTCAGTTTTGAA 60.532 50.000 9.84 0.00 31.69 2.69
2296 2997 0.315886 TAGACGCGGCTCAGTTTTGA 59.684 50.000 23.11 0.00 0.00 2.69
2297 2998 1.136336 GTTAGACGCGGCTCAGTTTTG 60.136 52.381 23.11 0.00 0.00 2.44
2298 2999 1.145803 GTTAGACGCGGCTCAGTTTT 58.854 50.000 23.11 0.00 0.00 2.43
2299 3000 0.032952 TGTTAGACGCGGCTCAGTTT 59.967 50.000 23.11 0.00 0.00 2.66
2300 3001 0.388649 CTGTTAGACGCGGCTCAGTT 60.389 55.000 23.11 0.00 0.00 3.16
2301 3002 1.213013 CTGTTAGACGCGGCTCAGT 59.787 57.895 23.11 0.00 0.00 3.41
2302 3003 2.161486 GCTGTTAGACGCGGCTCAG 61.161 63.158 23.11 22.91 35.49 3.35
2303 3004 2.126071 GCTGTTAGACGCGGCTCA 60.126 61.111 23.11 11.31 35.49 4.26
2304 3005 1.289109 TTTGCTGTTAGACGCGGCTC 61.289 55.000 23.11 5.44 38.90 4.70
2305 3006 0.882927 TTTTGCTGTTAGACGCGGCT 60.883 50.000 22.96 22.96 38.90 5.52
2306 3007 0.724785 GTTTTGCTGTTAGACGCGGC 60.725 55.000 12.47 7.86 38.62 6.53
2307 3008 0.865769 AGTTTTGCTGTTAGACGCGG 59.134 50.000 12.47 0.00 0.00 6.46
2308 3009 1.525197 TCAGTTTTGCTGTTAGACGCG 59.475 47.619 3.53 3.53 45.23 6.01
2309 3010 2.659291 CGTCAGTTTTGCTGTTAGACGC 60.659 50.000 0.00 0.00 45.23 5.19
2310 3011 2.096909 CCGTCAGTTTTGCTGTTAGACG 60.097 50.000 0.00 0.00 45.23 4.18
2311 3012 2.223377 CCCGTCAGTTTTGCTGTTAGAC 59.777 50.000 0.00 0.00 45.23 2.59
2312 3013 2.158871 ACCCGTCAGTTTTGCTGTTAGA 60.159 45.455 0.00 0.00 45.23 2.10
2313 3014 2.218603 ACCCGTCAGTTTTGCTGTTAG 58.781 47.619 0.00 0.00 45.23 2.34
2314 3015 2.335316 ACCCGTCAGTTTTGCTGTTA 57.665 45.000 0.00 0.00 45.23 2.41
2315 3016 1.134175 CAACCCGTCAGTTTTGCTGTT 59.866 47.619 0.00 0.00 45.23 3.16
2316 3017 0.738389 CAACCCGTCAGTTTTGCTGT 59.262 50.000 0.00 0.00 45.23 4.40
2317 3018 0.030638 CCAACCCGTCAGTTTTGCTG 59.969 55.000 0.00 0.00 46.34 4.41
2318 3019 1.734388 GCCAACCCGTCAGTTTTGCT 61.734 55.000 0.00 0.00 0.00 3.91
2319 3020 1.299850 GCCAACCCGTCAGTTTTGC 60.300 57.895 0.00 0.00 0.00 3.68
2320 3021 1.362355 GGCCAACCCGTCAGTTTTG 59.638 57.895 0.00 0.00 0.00 2.44
2321 3022 3.850508 GGCCAACCCGTCAGTTTT 58.149 55.556 0.00 0.00 0.00 2.43
2331 3032 1.978617 CTGACATGTGGGGCCAACC 60.979 63.158 9.01 0.00 39.11 3.77
2332 3033 1.978617 CCTGACATGTGGGGCCAAC 60.979 63.158 1.15 3.33 0.00 3.77
2333 3034 2.440147 CCTGACATGTGGGGCCAA 59.560 61.111 1.15 0.00 0.00 4.52
2334 3035 4.365111 GCCTGACATGTGGGGCCA 62.365 66.667 21.52 5.84 38.77 5.36
2335 3036 4.052518 AGCCTGACATGTGGGGCC 62.053 66.667 25.83 13.87 45.07 5.80
2336 3037 2.753043 CAGCCTGACATGTGGGGC 60.753 66.667 23.51 23.51 44.38 5.80
2337 3038 1.377725 GTCAGCCTGACATGTGGGG 60.378 63.158 19.77 6.17 46.22 4.96
2338 3039 4.308526 GTCAGCCTGACATGTGGG 57.691 61.111 19.77 6.58 46.22 4.61
2346 3047 1.676635 GCATGCCAAGTCAGCCTGA 60.677 57.895 6.36 0.00 0.00 3.86
2347 3048 2.707849 GGCATGCCAAGTCAGCCTG 61.708 63.158 32.08 0.00 42.01 4.85
2348 3049 2.362120 GGCATGCCAAGTCAGCCT 60.362 61.111 32.08 0.00 42.01 4.58
2349 3050 2.362120 AGGCATGCCAAGTCAGCC 60.362 61.111 37.18 8.26 45.54 4.85
2350 3051 1.975407 ACAGGCATGCCAAGTCAGC 60.975 57.895 37.18 8.91 38.92 4.26
2351 3052 0.892358 ACACAGGCATGCCAAGTCAG 60.892 55.000 37.18 23.84 38.92 3.51
2352 3053 1.151221 ACACAGGCATGCCAAGTCA 59.849 52.632 37.18 0.00 38.92 3.41
2353 3054 1.582968 CACACAGGCATGCCAAGTC 59.417 57.895 37.18 11.30 38.92 3.01
2354 3055 1.904865 CCACACAGGCATGCCAAGT 60.905 57.895 37.18 30.18 38.92 3.16
2355 3056 1.604308 TCCACACAGGCATGCCAAG 60.604 57.895 37.18 29.52 38.92 3.61
2356 3057 1.902918 GTCCACACAGGCATGCCAA 60.903 57.895 37.18 11.29 38.92 4.52
2357 3058 2.282391 GTCCACACAGGCATGCCA 60.282 61.111 37.18 13.31 38.92 4.92
2358 3059 1.252904 AATGTCCACACAGGCATGCC 61.253 55.000 30.12 30.12 35.41 4.40
2359 3060 1.462616 TAATGTCCACACAGGCATGC 58.537 50.000 9.90 9.90 35.41 4.06
2360 3061 2.223641 GCATAATGTCCACACAGGCATG 60.224 50.000 0.00 0.00 35.41 4.06
2361 3062 2.026641 GCATAATGTCCACACAGGCAT 58.973 47.619 0.00 0.00 35.41 4.40
2362 3063 1.004628 AGCATAATGTCCACACAGGCA 59.995 47.619 3.49 0.00 35.41 4.75
2363 3064 1.402968 CAGCATAATGTCCACACAGGC 59.597 52.381 0.00 0.00 35.41 4.85
2364 3065 2.941064 CTCAGCATAATGTCCACACAGG 59.059 50.000 0.00 0.00 35.41 4.00
2365 3066 2.941064 CCTCAGCATAATGTCCACACAG 59.059 50.000 0.00 0.00 35.41 3.66
2366 3067 2.305635 ACCTCAGCATAATGTCCACACA 59.694 45.455 0.00 0.00 36.78 3.72
2367 3068 2.679837 CACCTCAGCATAATGTCCACAC 59.320 50.000 0.00 0.00 0.00 3.82
2368 3069 2.356022 CCACCTCAGCATAATGTCCACA 60.356 50.000 0.00 0.00 0.00 4.17
2369 3070 2.092968 TCCACCTCAGCATAATGTCCAC 60.093 50.000 0.00 0.00 0.00 4.02
2370 3071 2.195727 TCCACCTCAGCATAATGTCCA 58.804 47.619 0.00 0.00 0.00 4.02
2371 3072 3.209410 CTTCCACCTCAGCATAATGTCC 58.791 50.000 0.00 0.00 0.00 4.02
2372 3073 3.209410 CCTTCCACCTCAGCATAATGTC 58.791 50.000 0.00 0.00 0.00 3.06
2373 3074 2.578021 ACCTTCCACCTCAGCATAATGT 59.422 45.455 0.00 0.00 0.00 2.71
2374 3075 2.947652 CACCTTCCACCTCAGCATAATG 59.052 50.000 0.00 0.00 0.00 1.90
2375 3076 2.846206 TCACCTTCCACCTCAGCATAAT 59.154 45.455 0.00 0.00 0.00 1.28
2376 3077 2.027192 GTCACCTTCCACCTCAGCATAA 60.027 50.000 0.00 0.00 0.00 1.90
2377 3078 1.555075 GTCACCTTCCACCTCAGCATA 59.445 52.381 0.00 0.00 0.00 3.14
2378 3079 0.326264 GTCACCTTCCACCTCAGCAT 59.674 55.000 0.00 0.00 0.00 3.79
2379 3080 1.754745 GTCACCTTCCACCTCAGCA 59.245 57.895 0.00 0.00 0.00 4.41
2380 3081 1.003233 GGTCACCTTCCACCTCAGC 60.003 63.158 0.00 0.00 0.00 4.26
2381 3082 1.679898 GGGTCACCTTCCACCTCAG 59.320 63.158 0.00 0.00 32.69 3.35
2382 3083 1.846124 GGGGTCACCTTCCACCTCA 60.846 63.158 0.00 0.00 32.74 3.86
2383 3084 1.846124 TGGGGTCACCTTCCACCTC 60.846 63.158 0.00 0.00 41.11 3.85
2384 3085 2.154074 GTGGGGTCACCTTCCACCT 61.154 63.158 10.51 0.00 43.65 4.00
2385 3086 2.434774 GTGGGGTCACCTTCCACC 59.565 66.667 10.51 0.00 43.65 4.61
2393 3094 2.032681 GCTGACAGGTGGGGTCAC 59.967 66.667 4.26 0.00 40.16 3.67
2394 3095 3.249189 GGCTGACAGGTGGGGTCA 61.249 66.667 4.26 0.00 42.62 4.02
2395 3096 2.930562 AGGCTGACAGGTGGGGTC 60.931 66.667 4.26 0.00 35.83 4.46
2396 3097 2.930562 GAGGCTGACAGGTGGGGT 60.931 66.667 4.26 0.00 0.00 4.95
2397 3098 2.930019 TGAGGCTGACAGGTGGGG 60.930 66.667 4.26 0.00 0.00 4.96
2398 3099 1.845627 ATGTGAGGCTGACAGGTGGG 61.846 60.000 13.26 0.00 0.00 4.61
2399 3100 0.904649 TATGTGAGGCTGACAGGTGG 59.095 55.000 13.26 0.00 0.00 4.61
2400 3101 2.484417 GGATATGTGAGGCTGACAGGTG 60.484 54.545 13.26 0.00 0.00 4.00
2401 3102 1.765314 GGATATGTGAGGCTGACAGGT 59.235 52.381 13.26 3.30 0.00 4.00
2402 3103 2.045524 AGGATATGTGAGGCTGACAGG 58.954 52.381 13.26 0.00 0.00 4.00
2403 3104 3.834489 AAGGATATGTGAGGCTGACAG 57.166 47.619 13.26 0.00 0.00 3.51
2404 3105 5.428253 GTTAAAGGATATGTGAGGCTGACA 58.572 41.667 9.76 9.76 0.00 3.58
2405 3106 4.816925 GGTTAAAGGATATGTGAGGCTGAC 59.183 45.833 0.00 0.00 0.00 3.51
2406 3107 4.721776 AGGTTAAAGGATATGTGAGGCTGA 59.278 41.667 0.00 0.00 0.00 4.26
2407 3108 5.041191 AGGTTAAAGGATATGTGAGGCTG 57.959 43.478 0.00 0.00 0.00 4.85
2408 3109 4.971924 AGAGGTTAAAGGATATGTGAGGCT 59.028 41.667 0.00 0.00 0.00 4.58
2409 3110 5.297569 AGAGGTTAAAGGATATGTGAGGC 57.702 43.478 0.00 0.00 0.00 4.70
2410 3111 8.581253 AAAAAGAGGTTAAAGGATATGTGAGG 57.419 34.615 0.00 0.00 0.00 3.86
2437 3138 9.285359 AGGGAGAGATAGAAGGAATAAGAAAAA 57.715 33.333 0.00 0.00 0.00 1.94
2438 3139 8.862091 AGGGAGAGATAGAAGGAATAAGAAAA 57.138 34.615 0.00 0.00 0.00 2.29
2439 3140 8.293216 AGAGGGAGAGATAGAAGGAATAAGAAA 58.707 37.037 0.00 0.00 0.00 2.52
2440 3141 7.831955 AGAGGGAGAGATAGAAGGAATAAGAA 58.168 38.462 0.00 0.00 0.00 2.52
2441 3142 7.297108 AGAGAGGGAGAGATAGAAGGAATAAGA 59.703 40.741 0.00 0.00 0.00 2.10
2442 3143 7.394359 CAGAGAGGGAGAGATAGAAGGAATAAG 59.606 44.444 0.00 0.00 0.00 1.73
2443 3144 7.237982 CAGAGAGGGAGAGATAGAAGGAATAA 58.762 42.308 0.00 0.00 0.00 1.40
2444 3145 6.749772 GCAGAGAGGGAGAGATAGAAGGAATA 60.750 46.154 0.00 0.00 0.00 1.75
2445 3146 5.644188 CAGAGAGGGAGAGATAGAAGGAAT 58.356 45.833 0.00 0.00 0.00 3.01
2446 3147 4.691376 GCAGAGAGGGAGAGATAGAAGGAA 60.691 50.000 0.00 0.00 0.00 3.36
2447 3148 3.181434 GCAGAGAGGGAGAGATAGAAGGA 60.181 52.174 0.00 0.00 0.00 3.36
2448 3149 3.157087 GCAGAGAGGGAGAGATAGAAGG 58.843 54.545 0.00 0.00 0.00 3.46
2449 3150 3.831323 TGCAGAGAGGGAGAGATAGAAG 58.169 50.000 0.00 0.00 0.00 2.85
2450 3151 3.961484 TGCAGAGAGGGAGAGATAGAA 57.039 47.619 0.00 0.00 0.00 2.10
2451 3152 3.961484 TTGCAGAGAGGGAGAGATAGA 57.039 47.619 0.00 0.00 0.00 1.98
2452 3153 3.321682 CCTTTGCAGAGAGGGAGAGATAG 59.678 52.174 5.68 0.00 0.00 2.08
2453 3154 3.303938 CCTTTGCAGAGAGGGAGAGATA 58.696 50.000 5.68 0.00 0.00 1.98
2454 3155 2.117865 CCTTTGCAGAGAGGGAGAGAT 58.882 52.381 5.68 0.00 0.00 2.75
2455 3156 1.203237 ACCTTTGCAGAGAGGGAGAGA 60.203 52.381 5.68 0.00 37.36 3.10
2456 3157 1.066286 CACCTTTGCAGAGAGGGAGAG 60.066 57.143 5.68 0.00 37.36 3.20
2457 3158 0.979665 CACCTTTGCAGAGAGGGAGA 59.020 55.000 5.68 0.00 37.36 3.71
2458 3159 3.547567 CACCTTTGCAGAGAGGGAG 57.452 57.895 5.68 0.30 37.36 4.30
2469 3170 0.179020 TGGTGGAGTGAGCACCTTTG 60.179 55.000 0.00 0.00 39.59 2.77
2470 3171 0.773644 ATGGTGGAGTGAGCACCTTT 59.226 50.000 0.00 0.00 39.59 3.11
2471 3172 0.773644 AATGGTGGAGTGAGCACCTT 59.226 50.000 0.00 0.00 39.59 3.50
2472 3173 0.037303 CAATGGTGGAGTGAGCACCT 59.963 55.000 0.00 0.00 39.59 4.00
2473 3174 0.250901 ACAATGGTGGAGTGAGCACC 60.251 55.000 0.00 0.00 39.33 5.01
2474 3175 1.160137 GACAATGGTGGAGTGAGCAC 58.840 55.000 0.00 0.00 0.00 4.40
2475 3176 0.320683 CGACAATGGTGGAGTGAGCA 60.321 55.000 0.00 0.00 0.00 4.26
2476 3177 1.639298 GCGACAATGGTGGAGTGAGC 61.639 60.000 0.00 0.00 0.00 4.26
2477 3178 1.021390 GGCGACAATGGTGGAGTGAG 61.021 60.000 0.00 0.00 0.00 3.51
2478 3179 1.003839 GGCGACAATGGTGGAGTGA 60.004 57.895 0.00 0.00 0.00 3.41
2479 3180 2.390599 CGGCGACAATGGTGGAGTG 61.391 63.158 0.00 0.00 0.00 3.51
2480 3181 2.047274 CGGCGACAATGGTGGAGT 60.047 61.111 0.00 0.00 0.00 3.85
2481 3182 2.819595 CCGGCGACAATGGTGGAG 60.820 66.667 9.30 0.00 0.00 3.86
2484 3185 3.803082 CTGCCGGCGACAATGGTG 61.803 66.667 23.90 0.00 0.00 4.17
2502 3203 2.498726 CTTCTCGAGGGGCTCTGC 59.501 66.667 13.56 0.00 0.00 4.26
2503 3204 2.498726 GCTTCTCGAGGGGCTCTG 59.501 66.667 13.56 0.00 0.00 3.35
2504 3205 2.762043 GGCTTCTCGAGGGGCTCT 60.762 66.667 22.52 0.00 0.00 4.09
2505 3206 3.855853 GGGCTTCTCGAGGGGCTC 61.856 72.222 23.42 18.73 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.