>input_sequence_77405
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------------------------------ATGGCAAACGCCAAGCTTGTAGTCGTGGGCGTGGCCATCCTTGTAATCCT
GCTGCAGGTGTCGACGTGCGCCATGGCCCGG------CACCACGCCAAGCCGGACCCGTGCGCCAGCGAGGACGACT---
CCGTGCCGGGCATGGTCCACAAGCACAAGCACAACAAACCCCACTGCACCACGCTGGGCCACA---------------AC
GG------CGGCGGCGGCAGCACCCCAGGCGTGATGACGGTGAACGGCTTCCAGAAGGGCCAGGACGGCGGCGGGCCGTC
GGAGTGCGACGGTAAGTACCACAGCAACGGTGACATGATCGTGGCGCTGTCGACGCGCTGGTACGCGGGCGGACGCCGGT
GCGGCAAGATGATCAACATCACCAGCAAGCACAACGGGCGCACCGTGCAGGCCAAGGTGGTGGACGAGTGCGACTCCAAC
CACGGCTGCAAGACCAACATCGTGGACACCTCCGAGGCCGTGTGGAAGGCGCTCGGGCTCGACAGCAACATCGGCGAGGT
GCCGGTGACATGGTCCGACGCCTGA-------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>chr1D_1_TraesCS1D01G173100
CGCGCCACACTACACTCACAATGGTAGATAGGGACGTTGTCGCCGACCAGTTCGCTGCCACCACAATCTCCCACATCCCC
AGTTCTCCCTGCTGCTATGGCTCCACCTCATCCTCGCCGTCATGCCCATCACCATCGAGCACCTCGCCATCTCCCTCTCT
CACTCTGGACATGGATGATGAGAGCGAGCGAGATCAGAGAGGGGATAAGGGGAATAGCGAGCGTGTTGAATGAGTGAGAA
CATTCGC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TAA
GTGATGACTGCGCGAACGATTTCCAGAAGATGACCTGGCACCAGAGTTGCGCTCAGATCCGGGCAGCAAGATCGAACGGT
TAAAACAGCGTTTGCTTCTCGCAACAACAAAAAAACTGCGTTTGCTGGAAAAACTTTTCTGGGAAACGTCAGCCAAGTTA
TCATCTCAGTTTTTCTTTTTTGCGGGGAAAGTTACCATCTCCGTTAACCGTTACTAAACAACAGTTACGCATTGGACTCA
CCAACGAGATACGATACACCTA---CT--CTTATCCA-----------GTCATATCGTAGTACATCACGATTAATCCGCT
TGGGTCTT-GGAATTTCCTTTGCGTGGAGAAGTAAAATTTGGTACGATCTCTCTGCCAAGAGCGACCTGCTGCGTCCTGT
CCTCGGTTATTCCCGCTGTAACATTAGCGACACCACGTAATCCAAACGAACTCATCTCTACAATTCAGTTGTCTTTTAAC
GCAGCCATTTCGGGTCTGTATCGAGCACACCGAGAGAGTATCATACTCTGTAAAATTCCTTGTACTCATCT-AAAAAAA-
--------------GGAGGCTCTTGCCCGGAAGGTTAGGAACCACACAAATGCTGCCA-------------GCACACGTG
TGACA----AAGTACGGTGCATCCCGTGCTTAGC--------CTGCAGCTTGTTCTCGTACGTGCGCC--TATATATACT
CTTGGAAGCAGCGTGATCAGAACCAAGTAAGCACGGCAAGTTAAGTGCAAAGCTAGGCTAGCAAATACT-TA-------A
GCAGGCAGGAGG-----------TT-AGCAATGGCAAACGCCAAGCTTGTAGTCGTGGGCGTGGCCATCCTTGTAATCCT
GCTGCAGGTGTCGACGTGCGCCATGGCCCGG------CACCACGCCAAGCCGGACCCGTGCGCCAGCGAGGACGACT---
CCGTGCCGGGCATGGTCCACAAGCACAAGCACAACAAACCCCACTGCACCACGCTGGGCCACA---------------AC
GG------CGGCGGCGGCAGCACCCCAGGCGTGATGACGGTGAACGGCTTCCAGAAGGGCCAGGACGGCGGCGGGCCGTC
GGAGTGCGACGGTAAGTACCACAGCAACGGTGACATGATCGTGGCGCTGTCGACGCGCTGGTACGCGGGCGGACGCCGGT
GCGGCAAGATGATCAACATCACCAGCAAGCACAACGGGCGCACCGTGCAGGCCAAGGTGGTGGACGAGTGCGACTCCAAC
CACGGCTGCAAGACCAACATCGTGGACACCTCCGAGGCCGTGTGGAAGGCGCTCGGGCTCGACAGCAACATCGGCGAGGT
GCCGGTGACATGGTCCGACGCCTGAGGCCAT--ATCCGCCGGCCATGGGTTCCAGGTTGCTCGAAGCCAGTCACGTACGG
TGTGCGTGGAAAAGGTCTCTAGCTGCTTCCTGGACCTGGGTACGTAGTACGTATGTATACGTTTGAAGTGCGAGTGTCGT
T---GTCAACCTCGACGGGTAGG--GAGCTTGTCGAG------TAGTCACCTCTTAT-ATAACCGAATAAA---ACTACC
TCTGTGG--GGTAGTGCGGGCCTATCTTG-------TACTAAGATCCACGCGTGTGTGCGTGTCGGTGTCAGTCTCAGTT
TACTATCCTAGTTTTCTGTTGTGGAATATACTCCCTCCGTTTTTAAATAGGCCAGTACTAGGCGCCGGCGCACCAGCCCA
ATATTCGGCCGGTCGAGTGCCAGCCCTCCGATTCGAACGCTATCAATCGTCAG-ATTTCTTCTTCTTTCTTCCTCGATGC
AAACCGGACCCCAGGCGGCTGCAGCGGGAGAGCACCACCGGCTAGCTGGAATCCCCCCCTCCTTGCAGCAGAGAGCGCCG
GCCCACTTGTCCACC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CCACCACTGCCATCTCCCCCGTTTCGCGCTCCGTCGTGGTCGGATCCCCGCCCC
AGCTCGGCCATGGCTGGCACGAAGCCTCTGCCAACAGCGGTTGTAG--CTCTCTCCGCCTGCAGTTGTAGCATCTGGTGG
AGTAAATTGCTCAAAGCCACCACATTTGTGGCTAGGATACTTCAAAACTACCACTTTTGCTAAAAATCACAAAAAACCAC
CGGCTCCGCGGCATGTGAGTAACAAATCGAACTAATTCAAAACTGAGCCGCGTCTAACAGCAAAACTGACGGGTTGGCCC
CACATGTCAGGCTGACTTGGCATGCCTGTGTGGACATTATGCTGAGGTGGAAGGTGACCCCACCTGTCAGCCTCACATAT
CCTTTAACCTCTTTTTATTTTTCTTATTCCTTCTATCTCTCCCTCTCTGCAAAGGTGCTCACTCCACCATTGTCGCCGGC
AGGCAGAGCCCCTCGAGAAGCCCCG
>chr1A_1
CGCGCGACACTACGCTCACAATGGTAGACAGGGACGTTGTCGCCGACCAGTTCACTGCCACCACCATCTCCCACATCCCC
AGTTCTCCCTGCTGCTATGGCTCCACCTCATCCTTGCCGTCATGGCCATCACCATCGAGCATCCCGTCATCTCCCTCTCT
CACTCTGGACATGGATGATGAGAGCGAACGAGATAAGAGAGGGGATAAGGGGAATAGCGAGCGTGTTGAATGAGGAGCTC
ATTCGCTAAGAGCATCTCCAACAGACGCCCAAAAAGAGCTCTGCGCACTAAAAAATTGTTTTTTTGAGGCGCCGAACAGC
TCCAGCAGATGCTGTAGCGCTAAAAAGTTTTGGGCGCGCGCTGAAAAACGCTATCGCGTGCATCATATTTTGGGCTCCGG
ATTGTGTGCGCTTCACAATTTGCACTGTCTGTTTTTTGGACACGTGTCCTTGGTCGTCTACTAAAGCAATGTTGATCCCG
ACGTATTAAAAATGCTAAAGTGACGCGCTATAACTTTTATTAGGCGCGATATTTTTGTGTGGCCGTTGGAGATGCTTTAA
GTGGTGACTGCTCGAACGATTTCGAGAAGATGACCGGGCACCAGAGTTCCGCCCTGATCCGGGCAGCAAGATCGAACGGT
TAAAACAGCGTTTGCTTCTCGCAACAACAAAAAAACTGCGTTTGCTGGAAAAACTTTTCTGGGAAACGTCAGCCAAGTTA
TCATCTCGGTTTTTCCTTTTTGCGGGGAAAGTTATCATCTCCGTTAACCGTTATTAAACAACAGTTACGCATTGGACTCA
CCAACGAGATACGATACACCTA---CT--CTTATCCA-----------GTCATATCGTAGTACATCACGATTAATCCGCT
TGGGTCTTTGGAATTTCCTTTGCCGGGAGATGTAAAATTTGGTACGATCTCTCTGCCAAGAGCGACCTGCTGCGTTCTGT
CCTCGGTTATTCCCGCTGTAACATTAGCGACACCACGTAATCCAAACGAACTCATCTCTACAATTCAGTTGTCTTTTAAC
GCAGCCATTTCGGGTCTGTATCGAGCACACCGAGAGAGTATCATACTCAGTAAAATTCCTTGTACTCATCTGAAAAAAA-
--------------GGAGGCTCTTGCCCGGAAGGTCAGGAACCACACAAATGCTGCCA-------------GCACACGTG
TGACA----AAGTACGGTGCATCCCGTGCTTAGC--------CTGCAGCTGGTTCTCGTACGTGCGCC--TATATATACT
CTTGGAAGCAGCGTGATCAGAACCAAGTACGCAGGCCAAGTCAAGTGCAAAGCTAGGCTAGCAAATACT-TG-------A
GCAGGCAGGAGG-----------TTTAGCAATGGCAAACACCAAGCTTGTAGTCGTGGGCGTGGCCATCCTTGTAATCCT
GCTGCAGGTGTCGACGTGCGCGGTGGCCCGG------CACCACGCCAAGCCGGACCCGTGCGCCAGCGAGGACGACT---
CCGTGCCGGGCATGCTGCACAAGCACAAG------AAGCCCCACTGCACCTCGCCGGGCCGCA------------GCGGC
GG------CGGCGGCGGCGGCACCCCAGGCGTGATGACGGTGAACGGCTTCCAGAAGGGCCAGGACGGCGGCGGGCCGTC
GGAGTGCGACGGCAAGTACCACAGCAACGGCGACATGATCGTGGCGCTGTCGACGCGCTGGTACGCGGGCGGACGCCGGT
GCGGCAAGATGATCCGCATCACCAGCAAGCACAACGGGCGCACCGTGCAGGCCAAGGTGGTGGACGAGTGCGACTCCAAC
CACGGCTGCAAGACCAACATCGTGGACACCTCCGAGGCCGTGTGGAAGGCGCTCGGGCTCGACAGCAACATCGGCGAGGT
GCCGGTGACATGGTCCGACGCCTGAGGCCAT--ATCCGCCGGCCATGGGTTCCAGGTTGCACGAAGCCAGTCACGTACGG
TGTGCGTGGAAAAGGTCTCTAGCTGCTTCCTGGACCTGGGTAC---GTACGTATGTATACGTTTGAAGTGCGAGTGTCGT
T---GTCAATCTCGATGGGTAGTGCGAGCTTGTCGAG------TAGTTACTTCGTTG-----CAGAATAAAACTACTACC
TCTGTGGATGGTAGTGCGGATTTATCTTGC-A---CTACTAATATCCACGCGTGTGTACGTGTCGGTGTCAGTCTAAGTT
TACTATCGCTGTTTTCTATTGTGGGAATATA-------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>chr1B_442
--------------------------------------------------------------------------------
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-------------------------------TTATCATTCCCGTTAACCGTTACTAAACAACAGTTACGCATTGGACTCA
CCAACCAGATACGATACACTTA---CT--CTTATCCG-----------GTCATATCGTAGTACTTCACGATTAATTCGCT
TGGATCTT-GGAATTTCCTTTGCCTGGAGAAGTATAATTTGGTACGATC--TCTGCCAAGAGCGACCTGCTGTGTTCTGT
CCTCGGTTATTCCCGCTGTAACATTAGCGACACCACGTAATCCAAACGAACTCATCTCTACAATTCAGTTGTCTTTTAAC
GCAGCCATTTCGGGTCTGTATCGAGCACACCGAGAGAGTATCATACTCTGTAAAATTCCTTGTACTCATCT-AAAGAAA-
--------------GGAGGCTCTTGCCCGGAAGGTTGGGAAC--------------------------------CACGTG
TGACA----AAGTACGGTGCATCCCGTGCTTGGC--------CTGCAGCTGGTTCTCGTACGTGCGCC--TATATATACT
CTTCGAAGCAGCGTGATCAGAACCAAGTACGCACGGCAAGTTAAGTGCAAAGCTAGGCTAGCAAAATAGATA-------A
GCAGGCAGGAGG-----------TCTAGCAATGGCAAACGCCAAGCTTGTAGTCGTGGGGGTGGCCATCCTTGTAATCCT
GCTGCACGTGTCTACGTGCGCCATGGCCCGG------CACCACGCCAAGCCGGACCCGTGCGCCAGCGAGGACGACT---
CCGTGCCGGGCATGCTGCACAAGCACAAGCACAAGAAGCCCCACTGCCCCTCGCCGGGCGGCAGCGGTGGTGGCGGCGGC
CG------CGGAGGCGGCGGCACCCCAGGCGTGATGACGGTGAACGGCTTCCAGAAGGGTCAGGACGGCGGCGGGCCGTC
GGAGTGCGACGGCAAGTACCACAGCAACGGTGACATGATCGTGGCGCTGTCGACGCGCTGGTACGAGGGCGGACGCCGGT
GCGGCAAGATGATTCGCATCACCAGCAAGCACAACGGGCGCACCGTGCAGGCCAAGGTGGTGGACGAGTGCGACTCCAAC
CACGGCTGCAAGACCAACATCGTGGACACCTCCGAGGCCGTGTGGAAGGCGCTCGGGCTCGACAGCAACATCGGCGAGGT
GCCCGTCACATGGTCCGACGCCTGAGGCCAT--ACCCGCCGGCCATGGATTCCAGGTTGCTCGAAGCCAGTCACGTACGG
TGTGCGTGGAAAAGGTCTCTAGCTGCTTCCTGGACCTGGGTACGTAGTACGTATGTATACGTTTGAAGTGCGAGTGTCTT
TTGTGTCAATCTCGATGAGTAGG--TAGCTTGTCGAG------TAGTTACTTCGTTG-----CTGAATAAAACTACTACC
TCTGTCGATGGTAGTGCGGGTTTATCTTG-TA---CTACTAATATCCACGCGTGTGTACGTGTCGGTGTCAGTCTAAGTT
TACTATCGCTGTTTTCTGTTGTGAGAATATA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>chr1A_461
--------------------------------------------------------------------------------
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--------------------------------------------------TTATTAAACAACAGTTACACATTGGACTCA
CCAACAAC-TACCATACACTTGACTCT--CTTATCTAGTAGTATTAATGTATTATCGTAGTACCTGACGATTAATCCGCT
TGGATCCT-GTAATTTCCTTTCCCTGGAGAAGTAAAATTTGGTACGATCTCTCTGCCAAGAGCGACCTGCTCTGTTCTGT
CCTCGGTTATTACCGCTGTAACACCAGCGACACCACGTAATCCAAACGAACTCTTCTCTACAATTCAGTTGTCCTCTAAC
TCAGCCATTTTTGTTATGTATCGAGTACACCGAGCGAGTATCCTACTCAGCAAAACTCCTTGCACTCATCT-ATCTACAC
AAAACGACTGTTTTGGGGTCTCTTACCCGACAGGTTAGGAGCTACACAAATGCCGCCATGCCCATGC------ACACGTG
TGACTAATTAAGTACGGTGCATCCCGTGCTTGTC--------CTGCAGCTGATTCTCGCGCCTGCGCCTATATATAAACT
CCTCGAAGCAGCTTGATCAGAACCAAGTACGCACGCCAAGTCAAGTGCAAAGCTAGGCTAGCAAATACT-TG-------A
GCAGGCAGGAGG-----------TTTAGCAATGGCGATCGCCAAGCTTGTAGTCGTGGGCATGGCCATCCTTGTAATCCT
GCTGCAGGTGTCGACGTGCGCCGTGGCCCGG------CACCACGCCAAGCCGGACCCGTGCGCCAGCGAGGACGACT---
CCGTGCCGGGCATGCTGCACAAGCACAAGCACAAGAAGCCCCACTGCCCCTCGCCGGGCGGCACC------GGTGGTGGC
GG------CGGCGGCGGCGGCACCCCAGGCGTGATGACGGTGAACGGCTTCGAGAAGGGCCAGGAGGGCGGCCCGCCGTC
GGAGTGCGACGGCAAGTTTCACAGCAACAAGGAAATGATCGTGGCGCTGTCGACGAGGTGGTACGCGGGCGGACGCCGGT
GTGGCAAGATGATCAACATCACCAGCAAGAAGAACGGGCGCACCGTGCAGGCCAAGGTGGTGGACGAGTGCGACTCCAAC
CACGGCTGCAAGACCAACATCGTGGACACCTCCGAGGCCGTGTGGAAGGCGCTCGGGCTCGACAGCAACATCGGCGAGGT
GCCCGTCACATGGTCCGACGCCTGACACCATGTATTCCCCGGCCATGGATTCCAGGTTGCTCGAAGCCAGTCACGTACGG
TGTGCGTGGGAAAGTTCTCTAGCTGTTTCCTCGCCCTGGGTAC---GTACGTATGTATACGTTTGAAGCGCGAGTGTCGT
T---GTCAACCTCGCCGGGTAGG--TAGCTTGTCGAG------TAGTTACTTCGTATAATAACAGAATAAA---ACTACC
TCTGTGGATGGTAGCGCGGGTTTATCTTGGTACTCCTACTAAGATCCACGCGTGTGTACGTGTCGGTGTGAGTCTCAGTT
TACTATCGCTGTTTCCTGTTGTGGAATAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>chr1B_461
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------TTATTAAACAACAGTTACACATTGGACTCA
CCAACAAC-TACGATACACTTGAGTCT--CTCATATA-----------GTATTATCGTAGTACATGACGATTAATCCGCT
TGGATCCT-GTAATTTCCTTTGCCTGGAGATGTAAAATTCGGTACGGTCTCTCTGCCAAGAGCGACCTGCTCTGTTCTGT
CCTCGGTTATTACCGCTGTAACACCAGCGACACCACGTAATCCAAACGAACTCTTCTCTACAATTCAGTTGTCTTCTAAC
GCAGCCATTTTTGTTCTGTATCGAGTACACCGAGCGAGTATCCTACTCAGCAAAACTCCTTGCACTCATCT-ATCTACAC
AAAACGATTATTTTGGGGTCTCTTACCCGACAGGTTAGGAGCCACACAAATGCCGCCATG------CCCATGCACACGTG
TGACA----AAGTACGGCGCATCCCGTGCTTGGCGCCTTGGCCTGCAGCTGATTCTCGTGCCTGCGCC--TATATAAACT
CCTCGAAGCAGCTTGATCAGAACCAAGTACGCACGCCAAGTCAAGTGCAAAGCTAGGCTAGCAAATACTACTAGTACTTA
GCAGGCAGGAGG-----------TTTAGCAATGGCAAACGCCAAGCTTGTAGTCGTGGGCATGGCCATCCTTGTAATCCT
GCTGCAGGTGTCGACGTGCGCCGTGGCCAGG------CACCACGCCAAGCCGGACCCGTGCGCCAGCGAGGACGACT---
CCGTGCCGGGCATGCTGCACAAGCACAAGCACAAGAAGCCCCACTGCACCTCGCCGGGCGGCACC------GGTGGTGGC
GGTGGCGGCGGCGGCGGCGGCACCGCAGGCGTGATGACGGTGAACGGCTTCGAGAAGGGCCAGGAGGGCGGCCCGCCGTC
GGAGTGCGACGGCAAGTTTCACAGCAACAAGGACATGATCGTGGCGCTGTCGACGAGGTGGTACGCGGGCGGACGCCGGT
GCGGCAAGATGATCAACATCACCAGCAAGCACAACGGGCGCACCGTGCAGGCCAAGGTGGTGGACGAGTGCGACTCCAAC
CACGGCTGCAAGACCAACATCGTGGACACCTCCGAAGCCGTGTGGAAGGCCCTCGGGCTCGACAGCAACATCGGCGAGGT
GCCCGTCACATGGTCCGACGCCTGAAAACA--TATTCGCCGGCCATGGATTCCAGGTTGCTCGAAGCCAGTCACGTA-GG
TGTGCGTGGGAAAGTTGTCTAGCTGTTTCCTGGCCCTGGGTAC---GTACGTATGTATACGTTTGAAGTGTGAGTGTCGT
T---GTCAATCTCGATGGGTAGG--TAGCTTGTCGAGTAGTACTAGTTACTTCGTATAATAACAGAATAAA---ACTGCC
TCTGTGGATGGTAGTGCGGGTTTATCTTG-TACCCCTACTAAGATCCACGCGTGTGTACGTGTCGGTGTGAGTCTCGGTT
TACTATCGATGTTTCCTATTGTGGAATATA--------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>chr1D_480
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------CATTGGACACA
CCACCAAC-TACGATACACTTGGCTCTTGCTCATCTA-----------GTCATATCGTAGTATATCACGATTAGAAAGCT
TTGATTTT-GGAATTTTCTCTGCTTGGAGTAGTGAAAACTGGTACGTTCTCTCTACCAAGAGCGACCTGCTGTGTTCTGC
CCTCAGTTATTACCGCTGTAATATTAGCGACACCATGTAATCCAAACGAACTCATCTCTACAATTCAGTTGTCATCTAAC
GCAGCCATTTTAGGCCTGTATCGAGCACACCGAGAGAGTATCGGTATATA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CGTACGTGCGCC--TATATAAACT
CCTCGAACCAGCCACAACTCATCAC--CACCCACAGCAAGTCAAGTCAAAGGGCAGC----------AGGTA-------A
GCTGGCA-GAAG-----------CTTAGCCATGGCGAACACGAGGCTCGCGGT------CGTGGCCATGCTTGTGATCTT
ACTGCAGCTGTCCACGTTATCCGTGGCCCGG------CACCACGCCAAGCCGGACCCCTGCGTCGGCGAGGACGACT---
CCGTGCCAGGCATGG------TCCACAAGCACAAGAAACCCCACTGCCCGTCGCCGGGCGGCAGC------GGTGGCGGC
GG------CGGCGGCGGCGGCACGCCTGGCGTGATGACGGTGAACGGGTTCCAGAAAGGCGAGGACGGCGGCGCACCGTC
GGAGTGCGACGGCAAATACCACAGCGACAAGGACATGATCGTGGCGCTGTCGACGAGGTGGTACGCGGGCGGACGCCGGT
GCGGCAAGATGATCAACATCACCAGCAAGAAGAACGGGCGCACCGTGCAGGCCAAGGTGGTGGATGAGTGCGACTCCAAC
CACGGCTGCAAGACCAACATCGTGGACACCACGGAAGCCGTGTGGAAGGCGCTCGGGCTCGACAGCGACATCGGCGAGGT
GCCCGTCACATGGTCCGACGCCTGAGACCAT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>chr1B_480
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------CATTGGACACA
CCACCAAC-TACGGTACACTTGGCTCTTGCTCATCTA-----------GTCATATCGTAGTATATCACGATTAAAAAGCT
TTGATTTT-GGAATTTTCTTTGCTTGGAGTGGTAGAAACTGGTACGTTCTCTCTGCCAAGAGCGACCTGCTGTGTTCTGC
CCTCGGTTATTACCGCTGTAATATTAGCGACACCATGTAATCCAAACGAACTCATCTCTACAATTCAGTTGTCATCTAAC
GCAGCCATTTTAGGCCTGTATCGAGCACACCGAGAGAGTATCGGTATATA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CGTACGTGCGCC--TATATAAACT
CCTCGAACCAGCCACAACTCATC--AGCACCCACAGCAAGTCAAGTTAAAGGGCAGC----------AGGTA-------A
GCCGGCA-GAAG-----------CTTAGCCATGGCGAACACGAGGCTCACGGT------CGTGGCCATGCTTGTGATCTT
ACTGCAGCTGTCCACGTTATCCGTGGCCCGG------CACCACGCCAAGCCAGACCCCTGCGTCGGCGAGGACGACT---
CCGTGCCGGGCATGG------TCCACAAGCACAAGAAACCCCACTGCCCGTCGCCGGGCGGCGGC------GGTGGTCGC
GG------CGGCGGCGGCGGCACGCCTGGCGTGATGACGGTGAACGGGTTCCAGAAAGGCGAGGACGGCGGCGCACCGTC
GGAGTGCGACGGCAAGTTCCACAGCGACAAGGACATGATCGTGGCGCTGTCGACGAGGTGGTACGCGGGCGGACGCCGGT
GCGGCAAGATGATCAACATCACCAGCAAGAAGAACGGGCGCACCGTGCAGGCCAAGGTGGTGGATGAGTGCGACTCCAAC
CACGGCTGCAAGACCAACATCGTGGACACCTCCGAAGCCGTGTGGAAGGCGCTCGGGCTCGACAGCGACATCGGCGAGGT
GCCCGTCACATGGTCCGACGCCTGAGACCAT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>chr1D_592
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TTGGTACGATCTCTCTGCCAAGAGCGACCTGCTCTGTTCTGC
CCTCGGTTATTACCGCTGTAACACCAGCGACACCACGTAATCCAAACGAACTCTTCTCTACAATTCAGTTGTCTTCTAAC
GCAGCCATTTTTGTTCTGTATCGAGAACACCGAGCGAGTATCCTACTCAGCAAAACT---------CATCT-ATCTACAC
AAAACGATTATTTTGGGGTCTCTTACCGGACAGGTTAGGAGCCACACAAATGCCGCCATG------C------ACACGTG
TGACTAATTAAGTACGGCGCATCCCGTGCTTGGA--------CTGCAGCTGGTTCTCGTGCATGCGCC--TATATAAACT
CCTCGAAGCAGCTTGATCAGAACCAAGTACGCACGCCAAGTCAAGTGCAAAGCTAGGCTAGCAAATGCTACTAGTACTTA
CCAGGCAGGAGG-----------TTTAGCGATGGCAAACGCCAAGCTTGTAGT------CATGGCCATCCTTGTAATCCT
GCTGCAGGTGTCGACGTGCGCCGTGGCCCGG------CACCACGCCAAGCCGGACCCGTGCGCCAGCGAGGACGACT---
CCGTGCCGGGCATGCTGCACAAGCACAAGCACAAGAAGCCCCACTGCCCCTCGCCGGGCGGCACC------GGTGGCGGC
GG------CGGCCGCGGCGGCACCCCAGGCGTGATGACGGTGAACGGCTTCGAGAAGGGCCAGGAGGGCGGCCCGCCGTC
GGAGTGCGACGGCAAGTTCCACAGCAACAAGGACATGATCGTGGCGCTGTCGACGAGGTGGTACGCGGGCGGACGCCGGT
GCGGCAAGATGATCAACATCACCAGCAAGCATAACGGGCGCACCGTGCAGGCCAAGGTGGTGGACGAGTGCGACTCCAAC
CACGGCTGCAAGACCAATATCGTGGACACCTCCGAAGCCGTGTGGAAGGCGCTCGGGCTCGACAGCAACATCGGCGAGGT
GCCCGTCACATGGTCCGACGCCTGAGACCATGTATTCCCCGGCCATGGATTCCAGGTTGCTCGAAGCCAGT---------
--TGCGTGGGAAAGTTCTCTAGCTGTTTCCTGGCCCTGGGTAC---GTACGTATGTATACGCTTGAAGTGTGAGTGTCGT
T---GTCAATCTCGATGGGTAGG--TAGCTTGTCGAG------TAGTTACTTCGTATAATAACAGAATAAA---AC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr5B_942
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------CACGGCAAGGCAAGTGCAAAGCTAGGCTAGCAAATAAT-TA-------A
GCAGGCAGGAGGAGCTTCACTGCTTCAGCAATGGCGAGCGCCAAGCTGGTGCT------CGTGGCCGCACTTGTGATCCT
GCTGCAGGCGTCGACGTGCGCGGTAGGCCGGCACCACCACCACGCCAAGCCGGACCCGTGCGTCGGCGAGGACGACGGCC
CCGAGCCGGGCATGC------GGCACAGGCACAGGAAGCCCCACTGCCCGTCGACCCCA------------GGCGGCCAC
GG------CGGCGGCGGCGGCACCCCGGGCATTATGACGGTGAACGGCTTCGAGAAGGGCCAGGAGGGCGGCGGGCCGGC
GGCGTGCGACGGCAAGTACCACAGCGACAAGGACATGATCGCGGCGCTGTCGACGCGGTGGTACGACGGCGGGCGCAGGT
GCCACAAGACGATCCGCATCACCAGCAAGCGCGACGGGCGCACCGTGGAGGCCCGGGTGGTGGACGAGTGCGACTCCAAC
CACGGCTGCAAGGACGACGTCGTCGACACCTCGGCCGCCGTGTGGGAGGCGCTCGGGCTCGACACCGACGTCGGCGTCGT
GCCCGTCACCTGGTCCGACGCCTGA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr1A_1023
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TCGCGGT------CGTGGCCATGCTTGTGATCTT
ACTGCAGCTGTCCACGTTATCCGTGGCCCGG------CACCACGCCAAGCCGGACCCCTGCGTCGGCGAGGACGACT---
CCGTCCCGGGCATGC------AGCACAAGCACAAGAAGCCCCACTGCCCGTCGCCGGGCGGCAAC------GGTGGTGGC
GG------CGGCGGCGGCGGCACGCCTGGCGTGATGACGGTGAACGGGTTCCAGAAAAACGAAGACGGCGGCGGGCCTTC
GGAGTGCGACGGCAAATACCACAGCGACAAGGACATGATCGTGGCGCTGTCGACGAGGTGGTACGCGGGCGGACGCCGGT
GCGGCAAGATGATCAACATCACCAGCAAGAAGAATGGGCGCACCGTGCAGGCCAAGGTGGTGGATGAGTGCGACTCCAAC
CACGGCTGCAAGACCAACATCGTGGACACCTCCGAAGCCGTGTGGAAGGCGCTCGGGCTCGACAGCAACATCGGCGAGGT
GCCTGTCACATGGTCCGACGCCTGA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>chr5A_1838
TAAAA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------AGGCCAGTACTAGGCGCCGGCGCACCGGCCCA
ATATTCAGCTGGTCGAGTGTCAGCTCTCCGATTCGAACACTATCAATTGTTAGAATTTCTTCTTCTTTCTTCCTCGATGC
AAACCGGACCCCAGGTGGCTGCAGTGGGAGAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTGTCCACCTCCATCACTGCCATCTCCCTCGTTTCGCGCTCCGTCATCGTCGGATCCGTGCCCC
AGCTCGGCCATGGCTGGCACGAAGCCTCTGCCAACAGCGGTTGTAGCTCTCTCTCCGCCTGCAGTTGCAGCATCTAGTG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>SNPs
-----S-------S--------------S------------------------S----------S---------------
----------------------------------S---------S----------------S-S--S-------------
---------------------------S------S---------------------------------------SSSSSS
SS-SSSS-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S-------S-----------S-----------S------------S---S-S-------------------------
--------------------------------------------------------------------------------
-------S-------S------------------S---------------------------------------------
--------------------------------------------------------------------------------
-----------------------S---------------------------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S-----------------S---------------S---S-----S-------------------
------------------S-------------------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--S--S---------S----------------
--------------------SS-----------------------------------S----------------------
-------SSS--------------------SSSSSSSSSSSSSSSSSS--------------------------S-----
------S--S---------S----S-------------S--------S--S-----------------------------
---------------S--------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------S----------------S-S---------SS-----
-------------------------------------------------------------------S-------S---S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_609
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------ATGACCTGGCACCAGAGTTG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>reverse_1537
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CCACAAGCACAAGCACAACA--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>forward_904
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GGGTCTTGGAATTTCCTTTGCG--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>reverse_3018
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CAGCAAAACTGACGGGTTGG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
