Multiple sequence alignment - TraesCS1D01G164600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G164600 chr1D 100.000 5028 0 0 1 5028 235575762 235580789 0.000000e+00 9286.0
1 TraesCS1D01G164600 chr1D 98.555 346 4 1 1253 1597 197890872 197890527 1.200000e-170 610.0
2 TraesCS1D01G164600 chr1D 98.261 345 6 0 1253 1597 410027348 410027004 5.570000e-169 604.0
3 TraesCS1D01G164600 chr1B 93.824 1700 80 11 1591 3268 340810247 340811943 0.000000e+00 2534.0
4 TraesCS1D01G164600 chr1B 94.416 1182 55 9 3848 5028 340812670 340813841 0.000000e+00 1807.0
5 TraesCS1D01G164600 chr1B 97.388 536 14 0 3302 3837 340811942 340812477 0.000000e+00 913.0
6 TraesCS1D01G164600 chr1B 91.188 522 25 8 750 1253 340809733 340810251 0.000000e+00 689.0
7 TraesCS1D01G164600 chr1B 86.076 632 57 16 50 666 340808784 340809399 0.000000e+00 651.0
8 TraesCS1D01G164600 chr1B 78.322 286 51 4 2505 2789 368566134 368566409 1.860000e-39 174.0
9 TraesCS1D01G164600 chr1A 91.800 1317 80 8 2520 3822 311814086 311812784 0.000000e+00 1808.0
10 TraesCS1D01G164600 chr1A 95.274 931 39 4 1594 2521 311815138 311814210 0.000000e+00 1471.0
11 TraesCS1D01G164600 chr1A 87.759 964 46 23 345 1253 311817049 311816103 0.000000e+00 1061.0
12 TraesCS1D01G164600 chr1A 89.529 191 12 3 3848 4034 311812799 311812613 8.420000e-58 235.0
13 TraesCS1D01G164600 chr1A 90.000 170 15 1 50 219 311817221 311817054 8.480000e-53 219.0
14 TraesCS1D01G164600 chr1A 86.243 189 20 4 4065 4251 311812616 311812432 3.070000e-47 200.0
15 TraesCS1D01G164600 chr1A 80.357 224 36 7 2523 2741 313729184 313728964 4.030000e-36 163.0
16 TraesCS1D01G164600 chr1A 84.921 126 14 3 4538 4660 100000332 100000455 6.840000e-24 122.0
17 TraesCS1D01G164600 chr1A 92.593 54 3 1 1 54 50926124 50926176 5.400000e-10 76.8
18 TraesCS1D01G164600 chr2D 98.841 345 4 0 1253 1597 425098996 425098652 2.570000e-172 616.0
19 TraesCS1D01G164600 chr2D 96.000 50 0 2 1 50 517093066 517093113 4.170000e-11 80.5
20 TraesCS1D01G164600 chr6D 98.551 345 5 0 1253 1597 293593322 293593666 1.200000e-170 610.0
21 TraesCS1D01G164600 chr5D 98.551 345 5 0 1253 1597 141585283 141585627 1.200000e-170 610.0
22 TraesCS1D01G164600 chr3D 98.547 344 4 1 1253 1596 461416490 461416832 1.550000e-169 606.0
23 TraesCS1D01G164600 chr3D 98.261 345 6 0 1253 1597 331731715 331731371 5.570000e-169 604.0
24 TraesCS1D01G164600 chr3D 98.261 345 6 0 1253 1597 368728263 368728607 5.570000e-169 604.0
25 TraesCS1D01G164600 chr3D 98.261 345 6 0 1253 1597 414448362 414448706 5.570000e-169 604.0
26 TraesCS1D01G164600 chr3D 87.742 155 19 0 4538 4692 324611853 324612007 1.110000e-41 182.0
27 TraesCS1D01G164600 chr3A 83.168 101 12 5 4381 4479 93704995 93704898 2.490000e-13 87.9
28 TraesCS1D01G164600 chr6A 83.871 93 11 3 4408 4498 607948611 607948521 8.970000e-13 86.1
29 TraesCS1D01G164600 chr6B 97.826 46 1 0 1 46 383568541 383568496 4.170000e-11 80.5
30 TraesCS1D01G164600 chr6B 97.727 44 0 1 1 44 536107806 536107848 1.940000e-09 75.0
31 TraesCS1D01G164600 chr6B 89.655 58 3 3 1 58 47976018 47975964 2.510000e-08 71.3
32 TraesCS1D01G164600 chr7B 94.231 52 1 2 1 50 57199127 57199076 1.500000e-10 78.7
33 TraesCS1D01G164600 chr7B 76.800 125 24 4 4378 4499 639271271 639271149 1.170000e-06 65.8
34 TraesCS1D01G164600 chr7A 97.727 44 1 0 1 44 636166553 636166596 5.400000e-10 76.8
35 TraesCS1D01G164600 chr5B 94.000 50 3 0 1 50 185509515 185509466 5.400000e-10 76.8
36 TraesCS1D01G164600 chr5A 94.118 51 2 1 1 51 473320681 473320730 5.400000e-10 76.8
37 TraesCS1D01G164600 chr3B 100.000 40 0 0 3036 3075 57114563 57114602 1.940000e-09 75.0
38 TraesCS1D01G164600 chr3B 83.582 67 10 1 4412 4478 139736872 139736937 1.510000e-05 62.1
39 TraesCS1D01G164600 chr2B 97.500 40 1 0 3036 3075 735522953 735522914 9.030000e-08 69.4
40 TraesCS1D01G164600 chr2B 87.755 49 5 1 4445 4492 18220688 18220640 7.030000e-04 56.5
41 TraesCS1D01G164600 chr2B 87.755 49 5 1 4445 4492 18229044 18228996 7.030000e-04 56.5
42 TraesCS1D01G164600 chr2B 87.755 49 5 1 4445 4492 18251948 18251900 7.030000e-04 56.5
43 TraesCS1D01G164600 chrUn 87.755 49 5 1 4445 4492 167269417 167269369 7.030000e-04 56.5
44 TraesCS1D01G164600 chr4D 84.483 58 8 1 4423 4480 469586925 469586869 7.030000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G164600 chr1D 235575762 235580789 5027 False 9286.000000 9286 100.000000 1 5028 1 chr1D.!!$F1 5027
1 TraesCS1D01G164600 chr1B 340808784 340813841 5057 False 1318.800000 2534 92.578400 50 5028 5 chr1B.!!$F2 4978
2 TraesCS1D01G164600 chr1A 311812432 311817221 4789 True 832.333333 1808 90.100833 50 4251 6 chr1A.!!$R2 4201

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 125 0.895530 CTCCTCGGTGTTGGCTTCTA 59.104 55.0 0.00 0.0 0.00 2.10 F
1415 1716 0.253044 TTTTGATGAGGCGAGGGAGG 59.747 55.0 0.00 0.0 0.00 4.30 F
1507 2580 0.036164 ATGCCACAACTTACCTCGCA 59.964 50.0 0.00 0.0 0.00 5.10 F
1831 2913 0.044092 TCATGGGCCTTGGAGGAGTA 59.956 55.0 18.35 0.0 37.67 2.59 F
2554 3774 0.305313 TTAACGCACCGCAAACTCAC 59.695 50.0 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1488 2561 0.036164 TGCGAGGTAAGTTGTGGCAT 59.964 50.000 0.00 0.00 0.00 4.40 R
2485 3579 0.950836 TTGCTGCAGTAAACATGCGT 59.049 45.000 15.35 0.00 46.87 5.24 R
2490 3584 1.264020 CGAGCTTTGCTGCAGTAAACA 59.736 47.619 23.84 6.77 39.88 2.83 R
2857 4080 1.442520 CAAAACTGCATCACGGCCG 60.443 57.895 26.86 26.86 0.00 6.13 R
4480 5902 1.134788 ACCGAATACGAAGGAGCTTGG 60.135 52.381 0.00 0.00 42.66 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.866582 CAGAGGCCGGGGGTCATC 61.867 72.222 2.18 0.00 0.00 2.92
34 35 4.586306 GGGGTCATCCTCCTTTTCTTAA 57.414 45.455 0.00 0.00 35.33 1.85
35 36 4.930696 GGGGTCATCCTCCTTTTCTTAAA 58.069 43.478 0.00 0.00 35.33 1.52
36 37 5.330233 GGGGTCATCCTCCTTTTCTTAAAA 58.670 41.667 0.00 0.00 35.33 1.52
37 38 5.778241 GGGGTCATCCTCCTTTTCTTAAAAA 59.222 40.000 0.00 0.00 35.33 1.94
90 91 3.777106 TTGTCTTGCCAGAGTTGAGAT 57.223 42.857 0.00 0.00 0.00 2.75
124 125 0.895530 CTCCTCGGTGTTGGCTTCTA 59.104 55.000 0.00 0.00 0.00 2.10
128 129 1.740296 CGGTGTTGGCTTCTACGGG 60.740 63.158 0.00 0.00 0.00 5.28
157 158 5.172232 CGATCTATCTAGTTTGCTGTTGTCG 59.828 44.000 0.00 0.00 0.00 4.35
183 184 4.926860 TTGCACTTCTACATCAATGACG 57.073 40.909 0.00 0.00 0.00 4.35
191 192 5.644977 TCTACATCAATGACGTCTCTGTT 57.355 39.130 17.92 6.20 0.00 3.16
210 211 9.909644 TCTCTGTTGTTACTTCTATAAACTCAC 57.090 33.333 0.00 0.00 0.00 3.51
225 226 9.953825 CTATAAACTCACGTGTTTCAATAAGAC 57.046 33.333 16.51 0.00 40.23 3.01
228 229 5.045215 ACTCACGTGTTTCAATAAGACGAA 58.955 37.500 16.51 1.91 34.22 3.85
230 231 4.446385 TCACGTGTTTCAATAAGACGAAGG 59.554 41.667 16.51 3.95 34.22 3.46
264 265 1.402968 CAGTGCATCACTATTGGGTGC 59.597 52.381 0.00 0.00 43.43 5.01
304 305 4.889409 TGATTTCTTCAAGAACTTGCCTGT 59.111 37.500 0.00 0.00 40.24 4.00
319 320 6.458210 ACTTGCCTGTAATTTTTCATTCCTG 58.542 36.000 0.00 0.00 0.00 3.86
389 393 6.957920 AAAACAAGCCCTGCAATTTAAATT 57.042 29.167 7.64 7.64 0.00 1.82
393 397 4.376340 AGCCCTGCAATTTAAATTCGAG 57.624 40.909 10.53 9.06 0.00 4.04
429 433 8.571336 CACCTTGAGAATAGAAAACAAACTCAT 58.429 33.333 0.00 0.00 33.90 2.90
464 468 8.607441 AACTATAACACATATCATGATTGCGT 57.393 30.769 14.65 9.18 0.00 5.24
503 515 9.981460 AAGTTAGGATATTCTTTTCCTGATGTT 57.019 29.630 1.76 0.00 42.38 2.71
539 551 1.269051 CGGAGTTGTTCCCAGTTTTGC 60.269 52.381 0.00 0.00 43.63 3.68
549 561 6.000840 TGTTCCCAGTTTTGCTTTTTCTTTT 58.999 32.000 0.00 0.00 0.00 2.27
556 568 7.906527 CCAGTTTTGCTTTTTCTTTTGATGAAG 59.093 33.333 0.00 0.00 0.00 3.02
557 569 8.658609 CAGTTTTGCTTTTTCTTTTGATGAAGA 58.341 29.630 0.00 0.00 34.00 2.87
558 570 8.876790 AGTTTTGCTTTTTCTTTTGATGAAGAG 58.123 29.630 0.00 0.00 37.01 2.85
559 571 6.833342 TTGCTTTTTCTTTTGATGAAGAGC 57.167 33.333 0.00 0.00 37.01 4.09
560 572 5.904941 TGCTTTTTCTTTTGATGAAGAGCA 58.095 33.333 0.00 0.00 39.60 4.26
561 573 6.518493 TGCTTTTTCTTTTGATGAAGAGCAT 58.482 32.000 0.00 0.00 38.37 3.79
591 607 1.513858 TGTTGAGTTGTACCCCACCT 58.486 50.000 0.00 0.00 0.00 4.00
670 693 2.433664 CCCGACCGAAAAGACCCG 60.434 66.667 0.00 0.00 0.00 5.28
680 713 3.976701 AAAGACCCGCATCGGCCTG 62.977 63.158 0.00 0.00 46.86 4.85
682 715 4.899239 GACCCGCATCGGCCTGAG 62.899 72.222 0.00 0.00 46.86 3.35
711 744 3.291167 GAAGCAAACCGGCGTCGAC 62.291 63.158 12.93 5.18 39.27 4.20
740 773 3.104512 TCTCCGGTCCACTGTTGATAAT 58.895 45.455 0.00 0.00 0.00 1.28
831 1104 2.101249 AGCCCACACAAATCAACAACAG 59.899 45.455 0.00 0.00 0.00 3.16
861 1146 2.264794 CCACGCTGACACCTACCC 59.735 66.667 0.00 0.00 0.00 3.69
995 1280 2.951745 CGTCGTCCGCAGCTGATC 60.952 66.667 20.43 0.00 0.00 2.92
1103 1389 0.900182 CCCCCTTTTCCCAGTTGCTC 60.900 60.000 0.00 0.00 0.00 4.26
1147 1433 4.775236 AGACTTTTCACTGAAGAGCACTT 58.225 39.130 8.84 0.00 39.24 3.16
1253 1554 2.817901 ACCGCATCGTTATCCAGTTAC 58.182 47.619 0.00 0.00 0.00 2.50
1255 1556 3.633525 ACCGCATCGTTATCCAGTTACTA 59.366 43.478 0.00 0.00 0.00 1.82
1256 1557 4.227538 CCGCATCGTTATCCAGTTACTAG 58.772 47.826 0.00 0.00 0.00 2.57
1257 1558 3.669122 CGCATCGTTATCCAGTTACTAGC 59.331 47.826 0.00 0.00 0.00 3.42
1258 1559 4.617959 GCATCGTTATCCAGTTACTAGCA 58.382 43.478 0.00 0.00 0.00 3.49
1260 1561 5.696724 GCATCGTTATCCAGTTACTAGCAAT 59.303 40.000 0.00 0.00 0.00 3.56
1261 1562 6.346919 GCATCGTTATCCAGTTACTAGCAATG 60.347 42.308 0.00 0.00 0.00 2.82
1263 1564 6.040247 TCGTTATCCAGTTACTAGCAATGTG 58.960 40.000 0.00 0.00 0.00 3.21
1264 1565 5.276868 CGTTATCCAGTTACTAGCAATGTGC 60.277 44.000 0.00 0.00 45.46 4.57
1265 1566 2.985896 TCCAGTTACTAGCAATGTGCC 58.014 47.619 0.00 0.00 46.52 5.01
1266 1567 2.017049 CCAGTTACTAGCAATGTGCCC 58.983 52.381 0.00 0.00 46.52 5.36
1268 1569 1.278127 AGTTACTAGCAATGTGCCCGT 59.722 47.619 0.00 0.00 46.52 5.28
1270 1571 0.742990 TACTAGCAATGTGCCCGTGC 60.743 55.000 0.00 0.00 46.52 5.34
1272 1573 3.892740 TAGCAATGTGCCCGTGCGT 62.893 57.895 0.00 0.00 46.52 5.24
1273 1574 4.341502 GCAATGTGCCCGTGCGTT 62.342 61.111 0.00 0.00 41.78 4.84
1274 1575 2.428902 CAATGTGCCCGTGCGTTG 60.429 61.111 0.00 0.00 41.78 4.10
1291 1592 3.471495 GTTGCAACGGATCCAAAGTAG 57.529 47.619 14.90 0.00 0.00 2.57
1292 1593 3.071479 GTTGCAACGGATCCAAAGTAGA 58.929 45.455 14.90 0.00 0.00 2.59
1293 1594 3.410631 TGCAACGGATCCAAAGTAGAA 57.589 42.857 13.41 0.00 0.00 2.10
1295 1596 5.092554 TGCAACGGATCCAAAGTAGAATA 57.907 39.130 13.41 0.00 0.00 1.75
1296 1597 5.116180 TGCAACGGATCCAAAGTAGAATAG 58.884 41.667 13.41 0.00 0.00 1.73
1297 1598 5.116882 GCAACGGATCCAAAGTAGAATAGT 58.883 41.667 13.41 0.00 0.00 2.12
1299 1600 6.200475 GCAACGGATCCAAAGTAGAATAGTAC 59.800 42.308 13.41 0.00 0.00 2.73
1300 1601 7.490000 CAACGGATCCAAAGTAGAATAGTACT 58.510 38.462 13.41 0.00 34.56 2.73
1301 1602 7.657023 ACGGATCCAAAGTAGAATAGTACTT 57.343 36.000 13.41 0.00 43.68 2.24
1302 1603 7.490000 ACGGATCCAAAGTAGAATAGTACTTG 58.510 38.462 13.41 0.00 41.47 3.16
1304 1605 7.980099 CGGATCCAAAGTAGAATAGTACTTGTT 59.020 37.037 13.41 0.00 41.47 2.83
1305 1606 9.315525 GGATCCAAAGTAGAATAGTACTTGTTC 57.684 37.037 6.95 6.64 41.47 3.18
1306 1607 9.871238 GATCCAAAGTAGAATAGTACTTGTTCA 57.129 33.333 17.72 6.28 41.47 3.18
1307 1608 9.654663 ATCCAAAGTAGAATAGTACTTGTTCAC 57.345 33.333 17.72 14.09 41.47 3.18
1315 1616 8.958119 AGAATAGTACTTGTTCACAAACTTGA 57.042 30.769 17.72 0.00 36.30 3.02
1317 1618 9.997482 GAATAGTACTTGTTCACAAACTTGAAA 57.003 29.630 0.00 0.00 37.24 2.69
1319 1620 7.681939 AGTACTTGTTCACAAACTTGAAAGA 57.318 32.000 0.00 0.00 37.24 2.52
1320 1621 8.106247 AGTACTTGTTCACAAACTTGAAAGAA 57.894 30.769 0.00 0.00 37.24 2.52
1321 1622 8.573035 AGTACTTGTTCACAAACTTGAAAGAAA 58.427 29.630 0.00 0.00 37.24 2.52
1322 1623 9.187455 GTACTTGTTCACAAACTTGAAAGAAAA 57.813 29.630 0.00 0.00 37.24 2.29
1323 1624 8.072238 ACTTGTTCACAAACTTGAAAGAAAAC 57.928 30.769 0.00 0.00 37.24 2.43
1324 1625 7.708752 ACTTGTTCACAAACTTGAAAGAAAACA 59.291 29.630 0.00 0.00 37.24 2.83
1325 1626 7.401484 TGTTCACAAACTTGAAAGAAAACAC 57.599 32.000 0.00 0.00 37.24 3.32
1327 1628 7.381139 TGTTCACAAACTTGAAAGAAAACACTC 59.619 33.333 0.00 0.00 37.24 3.51
1329 1630 7.657336 TCACAAACTTGAAAGAAAACACTCTT 58.343 30.769 0.00 0.00 37.24 2.85
1331 1632 7.382218 CACAAACTTGAAAGAAAACACTCTTGT 59.618 33.333 0.00 0.00 35.79 3.16
1392 1693 9.708222 CGTTTCACTCAAAATATATTTCTCAGG 57.292 33.333 11.08 2.76 0.00 3.86
1396 1697 9.739276 TCACTCAAAATATATTTCTCAGGTTGT 57.261 29.630 11.08 1.01 0.00 3.32
1406 1707 5.772825 TTTCTCAGGTTGTTTTGATGAGG 57.227 39.130 0.00 0.00 0.00 3.86
1407 1708 3.149196 TCTCAGGTTGTTTTGATGAGGC 58.851 45.455 0.00 0.00 0.00 4.70
1408 1709 1.879380 TCAGGTTGTTTTGATGAGGCG 59.121 47.619 0.00 0.00 0.00 5.52
1409 1710 1.879380 CAGGTTGTTTTGATGAGGCGA 59.121 47.619 0.00 0.00 0.00 5.54
1410 1711 2.095567 CAGGTTGTTTTGATGAGGCGAG 60.096 50.000 0.00 0.00 0.00 5.03
1411 1712 1.200020 GGTTGTTTTGATGAGGCGAGG 59.800 52.381 0.00 0.00 0.00 4.63
1412 1713 1.200020 GTTGTTTTGATGAGGCGAGGG 59.800 52.381 0.00 0.00 0.00 4.30
1413 1714 0.690192 TGTTTTGATGAGGCGAGGGA 59.310 50.000 0.00 0.00 0.00 4.20
1414 1715 1.339055 TGTTTTGATGAGGCGAGGGAG 60.339 52.381 0.00 0.00 0.00 4.30
1415 1716 0.253044 TTTTGATGAGGCGAGGGAGG 59.747 55.000 0.00 0.00 0.00 4.30
1416 1717 1.626356 TTTGATGAGGCGAGGGAGGG 61.626 60.000 0.00 0.00 0.00 4.30
1417 1718 2.123251 GATGAGGCGAGGGAGGGA 60.123 66.667 0.00 0.00 0.00 4.20
1418 1719 1.535202 GATGAGGCGAGGGAGGGAT 60.535 63.158 0.00 0.00 0.00 3.85
1419 1720 1.825281 GATGAGGCGAGGGAGGGATG 61.825 65.000 0.00 0.00 0.00 3.51
1420 1721 2.444895 GAGGCGAGGGAGGGATGT 60.445 66.667 0.00 0.00 0.00 3.06
1421 1722 2.765807 AGGCGAGGGAGGGATGTG 60.766 66.667 0.00 0.00 0.00 3.21
1422 1723 2.764128 GGCGAGGGAGGGATGTGA 60.764 66.667 0.00 0.00 0.00 3.58
1423 1724 2.143419 GGCGAGGGAGGGATGTGAT 61.143 63.158 0.00 0.00 0.00 3.06
1424 1725 1.700042 GGCGAGGGAGGGATGTGATT 61.700 60.000 0.00 0.00 0.00 2.57
1425 1726 0.533755 GCGAGGGAGGGATGTGATTG 60.534 60.000 0.00 0.00 0.00 2.67
1426 1727 0.533755 CGAGGGAGGGATGTGATTGC 60.534 60.000 0.00 0.00 0.00 3.56
1427 1728 0.842635 GAGGGAGGGATGTGATTGCT 59.157 55.000 0.00 0.00 0.00 3.91
1428 1729 1.213926 GAGGGAGGGATGTGATTGCTT 59.786 52.381 0.00 0.00 0.00 3.91
1429 1730 1.642762 AGGGAGGGATGTGATTGCTTT 59.357 47.619 0.00 0.00 0.00 3.51
1430 1731 2.027385 GGGAGGGATGTGATTGCTTTC 58.973 52.381 0.00 0.00 0.00 2.62
1431 1732 2.621407 GGGAGGGATGTGATTGCTTTCA 60.621 50.000 0.00 0.00 0.00 2.69
1432 1733 3.091545 GGAGGGATGTGATTGCTTTCAA 58.908 45.455 0.00 0.00 36.51 2.69
1434 1735 4.012374 GAGGGATGTGATTGCTTTCAAGA 58.988 43.478 0.00 0.00 35.37 3.02
1436 1737 5.759059 AGGGATGTGATTGCTTTCAAGATA 58.241 37.500 0.00 0.00 35.37 1.98
1444 1745 8.469200 TGTGATTGCTTTCAAGATAATAAAGGG 58.531 33.333 0.00 0.00 35.37 3.95
1447 1748 9.875691 GATTGCTTTCAAGATAATAAAGGGTTT 57.124 29.630 0.00 0.00 35.37 3.27
1463 2536 7.669089 AAAGGGTTTTCTTCAAATTGGAGTA 57.331 32.000 0.61 0.00 0.00 2.59
1469 2542 8.293157 GGTTTTCTTCAAATTGGAGTAGAGAAG 58.707 37.037 0.61 0.00 34.01 2.85
1471 2544 7.969536 TTCTTCAAATTGGAGTAGAGAAGTG 57.030 36.000 0.61 0.00 34.28 3.16
1473 2546 5.165961 TCAAATTGGAGTAGAGAAGTGGG 57.834 43.478 0.00 0.00 0.00 4.61
1479 2552 3.706594 TGGAGTAGAGAAGTGGGCTATTG 59.293 47.826 0.00 0.00 0.00 1.90
1481 2554 4.162509 GGAGTAGAGAAGTGGGCTATTGTT 59.837 45.833 0.00 0.00 0.00 2.83
1482 2555 5.091261 AGTAGAGAAGTGGGCTATTGTTG 57.909 43.478 0.00 0.00 0.00 3.33
1486 2559 3.230134 AGAAGTGGGCTATTGTTGCAAA 58.770 40.909 0.00 0.00 0.00 3.68
1487 2560 3.640967 AGAAGTGGGCTATTGTTGCAAAA 59.359 39.130 0.00 0.00 0.00 2.44
1488 2561 4.100808 AGAAGTGGGCTATTGTTGCAAAAA 59.899 37.500 4.10 4.10 0.00 1.94
1489 2562 4.622260 AGTGGGCTATTGTTGCAAAAAT 57.378 36.364 18.63 18.63 0.00 1.82
1490 2563 4.317488 AGTGGGCTATTGTTGCAAAAATG 58.683 39.130 22.67 14.07 0.00 2.32
1491 2564 3.072944 TGGGCTATTGTTGCAAAAATGC 58.927 40.909 22.67 21.07 0.00 3.56
1492 2565 2.419673 GGGCTATTGTTGCAAAAATGCC 59.580 45.455 29.24 29.24 37.34 4.40
1493 2566 3.072944 GGCTATTGTTGCAAAAATGCCA 58.927 40.909 30.65 13.85 37.91 4.92
1494 2567 3.120234 GGCTATTGTTGCAAAAATGCCAC 60.120 43.478 30.65 17.39 37.91 5.01
1495 2568 3.497640 GCTATTGTTGCAAAAATGCCACA 59.502 39.130 22.67 2.22 38.43 4.17
1497 2570 3.754188 TTGTTGCAAAAATGCCACAAC 57.246 38.095 14.17 6.10 42.77 3.32
1498 2571 2.983229 TGTTGCAAAAATGCCACAACT 58.017 38.095 0.00 0.00 40.88 3.16
1499 2572 3.341823 TGTTGCAAAAATGCCACAACTT 58.658 36.364 0.00 0.00 40.88 2.66
1500 2573 4.507710 TGTTGCAAAAATGCCACAACTTA 58.492 34.783 0.00 0.00 40.88 2.24
1501 2574 4.331168 TGTTGCAAAAATGCCACAACTTAC 59.669 37.500 0.00 0.00 40.88 2.34
1502 2575 3.462021 TGCAAAAATGCCACAACTTACC 58.538 40.909 0.00 0.00 0.00 2.85
1503 2576 3.133721 TGCAAAAATGCCACAACTTACCT 59.866 39.130 0.00 0.00 0.00 3.08
1504 2577 3.740832 GCAAAAATGCCACAACTTACCTC 59.259 43.478 0.00 0.00 0.00 3.85
1505 2578 3.915437 AAAATGCCACAACTTACCTCG 57.085 42.857 0.00 0.00 0.00 4.63
1506 2579 1.165270 AATGCCACAACTTACCTCGC 58.835 50.000 0.00 0.00 0.00 5.03
1507 2580 0.036164 ATGCCACAACTTACCTCGCA 59.964 50.000 0.00 0.00 0.00 5.10
1508 2581 0.602638 TGCCACAACTTACCTCGCAG 60.603 55.000 0.00 0.00 0.00 5.18
1509 2582 1.912371 GCCACAACTTACCTCGCAGC 61.912 60.000 0.00 0.00 0.00 5.25
1510 2583 1.298859 CCACAACTTACCTCGCAGCC 61.299 60.000 0.00 0.00 0.00 4.85
1511 2584 0.602638 CACAACTTACCTCGCAGCCA 60.603 55.000 0.00 0.00 0.00 4.75
1512 2585 0.324943 ACAACTTACCTCGCAGCCAT 59.675 50.000 0.00 0.00 0.00 4.40
1513 2586 1.271379 ACAACTTACCTCGCAGCCATT 60.271 47.619 0.00 0.00 0.00 3.16
1514 2587 2.027561 ACAACTTACCTCGCAGCCATTA 60.028 45.455 0.00 0.00 0.00 1.90
1515 2588 2.604046 ACTTACCTCGCAGCCATTAG 57.396 50.000 0.00 0.00 0.00 1.73
1516 2589 2.108168 ACTTACCTCGCAGCCATTAGA 58.892 47.619 0.00 0.00 0.00 2.10
1517 2590 2.700897 ACTTACCTCGCAGCCATTAGAT 59.299 45.455 0.00 0.00 0.00 1.98
1518 2591 2.820059 TACCTCGCAGCCATTAGATG 57.180 50.000 0.00 0.00 0.00 2.90
1519 2592 0.833287 ACCTCGCAGCCATTAGATGT 59.167 50.000 0.00 0.00 0.00 3.06
1520 2593 2.039418 ACCTCGCAGCCATTAGATGTA 58.961 47.619 0.00 0.00 0.00 2.29
1521 2594 2.036475 ACCTCGCAGCCATTAGATGTAG 59.964 50.000 0.00 0.00 0.00 2.74
1522 2595 2.297315 CCTCGCAGCCATTAGATGTAGA 59.703 50.000 0.00 0.00 0.00 2.59
1523 2596 3.056250 CCTCGCAGCCATTAGATGTAGAT 60.056 47.826 0.00 0.00 0.00 1.98
1524 2597 4.172505 CTCGCAGCCATTAGATGTAGATC 58.827 47.826 0.00 0.00 0.00 2.75
1525 2598 3.829026 TCGCAGCCATTAGATGTAGATCT 59.171 43.478 7.62 7.62 42.03 2.75
1526 2599 5.010282 TCGCAGCCATTAGATGTAGATCTA 58.990 41.667 5.51 5.51 39.76 1.98
1540 2613 9.152327 AGATGTAGATCTAATGGTCAGAAATGA 57.848 33.333 3.40 0.00 37.15 2.57
1541 2614 9.202273 GATGTAGATCTAATGGTCAGAAATGAC 57.798 37.037 3.40 0.00 38.04 3.06
1542 2615 7.203218 TGTAGATCTAATGGTCAGAAATGACG 58.797 38.462 3.40 0.00 39.57 4.35
1543 2616 5.605534 AGATCTAATGGTCAGAAATGACGG 58.394 41.667 0.00 0.00 39.57 4.79
1544 2617 5.363868 AGATCTAATGGTCAGAAATGACGGA 59.636 40.000 0.00 0.00 39.57 4.69
1545 2618 5.614324 TCTAATGGTCAGAAATGACGGAT 57.386 39.130 2.56 0.00 39.57 4.18
1546 2619 5.359756 TCTAATGGTCAGAAATGACGGATG 58.640 41.667 2.56 0.00 39.57 3.51
1547 2620 2.401583 TGGTCAGAAATGACGGATGG 57.598 50.000 2.56 0.00 39.57 3.51
1548 2621 1.017387 GGTCAGAAATGACGGATGGC 58.983 55.000 2.56 0.00 39.57 4.40
1549 2622 1.678728 GGTCAGAAATGACGGATGGCA 60.679 52.381 0.00 0.00 39.57 4.92
1550 2623 1.667724 GTCAGAAATGACGGATGGCAG 59.332 52.381 0.00 0.00 0.00 4.85
1551 2624 1.554617 TCAGAAATGACGGATGGCAGA 59.445 47.619 0.00 0.00 0.00 4.26
1552 2625 1.667724 CAGAAATGACGGATGGCAGAC 59.332 52.381 0.00 0.00 0.00 3.51
1553 2626 1.278985 AGAAATGACGGATGGCAGACA 59.721 47.619 0.00 0.00 0.00 3.41
1554 2627 1.398390 GAAATGACGGATGGCAGACAC 59.602 52.381 0.00 0.00 0.00 3.67
1555 2628 0.324614 AATGACGGATGGCAGACACA 59.675 50.000 0.00 0.00 0.00 3.72
1556 2629 0.391661 ATGACGGATGGCAGACACAC 60.392 55.000 0.00 0.00 0.00 3.82
1557 2630 1.741770 GACGGATGGCAGACACACC 60.742 63.158 0.00 0.00 0.00 4.16
1558 2631 2.347114 CGGATGGCAGACACACCA 59.653 61.111 0.00 0.00 41.06 4.17
1563 2636 2.048444 ATGGCAGACACACCATCATC 57.952 50.000 0.00 0.00 43.26 2.92
1564 2637 0.691904 TGGCAGACACACCATCATCA 59.308 50.000 0.00 0.00 0.00 3.07
1565 2638 1.089920 GGCAGACACACCATCATCAC 58.910 55.000 0.00 0.00 0.00 3.06
1566 2639 1.089920 GCAGACACACCATCATCACC 58.910 55.000 0.00 0.00 0.00 4.02
1567 2640 1.611410 GCAGACACACCATCATCACCA 60.611 52.381 0.00 0.00 0.00 4.17
1568 2641 2.781923 CAGACACACCATCATCACCAA 58.218 47.619 0.00 0.00 0.00 3.67
1569 2642 2.485426 CAGACACACCATCATCACCAAC 59.515 50.000 0.00 0.00 0.00 3.77
1570 2643 2.373169 AGACACACCATCATCACCAACT 59.627 45.455 0.00 0.00 0.00 3.16
1571 2644 2.485426 GACACACCATCATCACCAACTG 59.515 50.000 0.00 0.00 0.00 3.16
1572 2645 2.106338 ACACACCATCATCACCAACTGA 59.894 45.455 0.00 0.00 0.00 3.41
1573 2646 2.745821 CACACCATCATCACCAACTGAG 59.254 50.000 0.00 0.00 30.20 3.35
1574 2647 2.373169 ACACCATCATCACCAACTGAGT 59.627 45.455 0.00 0.00 30.20 3.41
1575 2648 3.005554 CACCATCATCACCAACTGAGTC 58.994 50.000 0.00 0.00 30.20 3.36
1576 2649 2.909006 ACCATCATCACCAACTGAGTCT 59.091 45.455 0.00 0.00 30.20 3.24
1577 2650 3.328931 ACCATCATCACCAACTGAGTCTT 59.671 43.478 0.00 0.00 30.20 3.01
1578 2651 4.202503 ACCATCATCACCAACTGAGTCTTT 60.203 41.667 0.00 0.00 30.20 2.52
1579 2652 4.763793 CCATCATCACCAACTGAGTCTTTT 59.236 41.667 0.00 0.00 30.20 2.27
1580 2653 5.939883 CCATCATCACCAACTGAGTCTTTTA 59.060 40.000 0.00 0.00 30.20 1.52
1581 2654 6.600822 CCATCATCACCAACTGAGTCTTTTAT 59.399 38.462 0.00 0.00 30.20 1.40
1582 2655 7.770433 CCATCATCACCAACTGAGTCTTTTATA 59.230 37.037 0.00 0.00 30.20 0.98
1583 2656 8.824781 CATCATCACCAACTGAGTCTTTTATAG 58.175 37.037 0.00 0.00 30.20 1.31
1584 2657 7.331026 TCATCACCAACTGAGTCTTTTATAGG 58.669 38.462 0.00 0.00 30.20 2.57
1585 2658 6.928348 TCACCAACTGAGTCTTTTATAGGA 57.072 37.500 0.00 0.00 0.00 2.94
1586 2659 6.936279 TCACCAACTGAGTCTTTTATAGGAG 58.064 40.000 0.00 0.00 0.00 3.69
1587 2660 6.497259 TCACCAACTGAGTCTTTTATAGGAGT 59.503 38.462 0.00 0.00 0.00 3.85
1588 2661 7.672660 TCACCAACTGAGTCTTTTATAGGAGTA 59.327 37.037 0.00 0.00 0.00 2.59
1589 2662 7.976734 CACCAACTGAGTCTTTTATAGGAGTAG 59.023 40.741 0.00 0.00 0.00 2.57
1592 2665 9.179909 CAACTGAGTCTTTTATAGGAGTAGAGA 57.820 37.037 0.00 0.00 0.00 3.10
1605 2678 3.257127 GGAGTAGAGATATCCCAGTGCAC 59.743 52.174 9.40 9.40 0.00 4.57
1606 2679 4.148838 GAGTAGAGATATCCCAGTGCACT 58.851 47.826 15.25 15.25 0.00 4.40
1607 2680 3.894427 AGTAGAGATATCCCAGTGCACTG 59.106 47.826 35.15 35.15 43.40 3.66
1611 2685 3.614092 AGATATCCCAGTGCACTGTTTG 58.386 45.455 37.55 27.05 42.27 2.93
1659 2733 6.090129 TCTTTCGTTTGGAACTCTTTGTTTG 58.910 36.000 0.00 0.00 39.30 2.93
1712 2794 1.540580 CGCACATCATGATGCTCCTCT 60.541 52.381 31.17 11.52 42.39 3.69
1726 2808 2.483491 GCTCCTCTTGCTCTTTGTTGAG 59.517 50.000 0.00 0.00 37.16 3.02
1786 2868 0.107643 TGAGCACCCACAATGACGAA 59.892 50.000 0.00 0.00 0.00 3.85
1819 2901 1.227674 GACGATCCCTGTCATGGGC 60.228 63.158 0.00 0.00 46.67 5.36
1831 2913 0.044092 TCATGGGCCTTGGAGGAGTA 59.956 55.000 18.35 0.00 37.67 2.59
1849 2935 7.500559 GGAGGAGTAATTTTTCTCATGTATGCT 59.499 37.037 0.00 0.00 32.93 3.79
1889 2982 8.197592 TCATATTATTCCCACCACGTTAGTAT 57.802 34.615 0.00 0.00 0.00 2.12
1915 3008 2.487762 GCTCCGAATTGACATGGTTCAA 59.512 45.455 0.00 0.00 39.79 2.69
2003 3096 4.220602 GGACAGTATCCTTTTTGTGGCATT 59.779 41.667 0.00 0.00 45.22 3.56
2312 3406 1.251251 AATCCTGGTGCAAGTTCAGC 58.749 50.000 0.00 0.00 35.22 4.26
2325 3419 4.728882 GCAAGTTCAGCGGTTAATCATCAG 60.729 45.833 0.00 0.00 0.00 2.90
2361 3455 3.380004 TGACTTTAGTGGTTGCAAGTTGG 59.620 43.478 0.00 0.00 29.43 3.77
2450 3544 1.759445 CTGGGTCCAGGTATCTGACTG 59.241 57.143 3.99 0.00 43.49 3.51
2485 3579 8.862325 AATGTTTACACAACTAGATGATTCCA 57.138 30.769 7.05 0.00 36.16 3.53
2489 3583 3.261580 CACAACTAGATGATTCCACGCA 58.738 45.455 7.05 0.00 0.00 5.24
2490 3584 3.873361 CACAACTAGATGATTCCACGCAT 59.127 43.478 7.05 0.00 0.00 4.73
2502 3596 0.454957 CCACGCATGTTTACTGCAGC 60.455 55.000 15.27 0.00 39.64 5.25
2510 3605 1.264020 TGTTTACTGCAGCAAAGCTCG 59.736 47.619 15.27 0.00 36.40 5.03
2529 3749 6.851609 AGCTCGAAGACATATAGCTATGAAG 58.148 40.000 16.77 8.22 41.56 3.02
2551 3771 0.733729 TTGTTAACGCACCGCAAACT 59.266 45.000 0.26 0.00 0.00 2.66
2554 3774 0.305313 TTAACGCACCGCAAACTCAC 59.695 50.000 0.00 0.00 0.00 3.51
2570 3791 7.336975 GCAAACTCACATTGTGTTAAAATGAC 58.663 34.615 16.06 3.87 38.21 3.06
2590 3811 6.239217 TGACTTCAGTATCTATGGCATGTT 57.761 37.500 10.98 0.00 0.00 2.71
2736 3957 2.512692 TTACCTGCTGATGTGGCATT 57.487 45.000 0.00 0.00 39.07 3.56
2741 3962 1.816835 CTGCTGATGTGGCATTCTTGT 59.183 47.619 0.00 0.00 39.07 3.16
2769 3992 4.482952 AGGAAAAATAGGTAGTGGGTCG 57.517 45.455 0.00 0.00 0.00 4.79
2770 3993 3.199289 AGGAAAAATAGGTAGTGGGTCGG 59.801 47.826 0.00 0.00 0.00 4.79
2857 4080 7.873739 ATTTGTCTTAAAAGTTGCACTATGC 57.126 32.000 0.00 0.00 45.29 3.14
2974 4207 2.875087 TTGCATGCATATGGTTCTGC 57.125 45.000 23.37 0.00 38.87 4.26
2977 4210 1.872952 GCATGCATATGGTTCTGCGTA 59.127 47.619 14.21 0.00 41.32 4.42
2984 4217 4.084328 GCATATGGTTCTGCGTAGTCATTC 60.084 45.833 4.56 0.00 0.00 2.67
3040 4273 5.130477 TCTTCAGGACTACAGTTCTTGGTTT 59.870 40.000 0.00 0.00 29.58 3.27
3076 4309 3.369997 GCCCCAACTCTTTGTTTGGAAAA 60.370 43.478 1.82 0.00 42.27 2.29
3084 4317 9.545611 CAACTCTTTGTTTGGAAAATTTCTTTG 57.454 29.630 5.65 0.00 36.63 2.77
3223 4456 6.278363 GGATGATTGCAATAGCTTGTCAAAT 58.722 36.000 12.97 0.00 42.74 2.32
3272 4505 7.971201 TCTGCTCATCCTATTTTATCTGATGT 58.029 34.615 0.00 0.00 35.47 3.06
3286 4519 8.853077 TTTATCTGATGTGATGTTGTTTCTCT 57.147 30.769 0.00 0.00 0.00 3.10
3415 4648 2.203070 CCCACCAGCGGAGTATGC 60.203 66.667 1.50 0.00 0.00 3.14
3460 4693 1.470494 TGAACGTGCAGTTGCTTTCAA 59.530 42.857 5.62 0.00 44.35 2.69
3566 4799 0.038166 ACCATCCGGTGAGCACAAAT 59.962 50.000 0.00 0.00 46.79 2.32
3651 4885 0.613292 AGCTGTCCGTCTCCTGTCAT 60.613 55.000 0.00 0.00 0.00 3.06
3653 4887 1.476891 GCTGTCCGTCTCCTGTCATAA 59.523 52.381 0.00 0.00 0.00 1.90
3821 5055 7.234577 TGGTAAGCTTAAAATTCCCTGAAACAT 59.765 33.333 7.99 0.00 0.00 2.71
3822 5056 8.094548 GGTAAGCTTAAAATTCCCTGAAACATT 58.905 33.333 7.99 0.00 0.00 2.71
3824 5058 7.544804 AGCTTAAAATTCCCTGAAACATTCT 57.455 32.000 0.00 0.00 0.00 2.40
3837 5071 6.183360 CCTGAAACATTCTCTCTCTCTCTCTC 60.183 46.154 0.00 0.00 0.00 3.20
3838 5072 6.244654 TGAAACATTCTCTCTCTCTCTCTCA 58.755 40.000 0.00 0.00 0.00 3.27
3839 5073 6.718912 TGAAACATTCTCTCTCTCTCTCTCAA 59.281 38.462 0.00 0.00 0.00 3.02
3840 5074 7.232330 TGAAACATTCTCTCTCTCTCTCTCAAA 59.768 37.037 0.00 0.00 0.00 2.69
3841 5075 7.537596 AACATTCTCTCTCTCTCTCTCAAAA 57.462 36.000 0.00 0.00 0.00 2.44
3842 5076 7.537596 ACATTCTCTCTCTCTCTCTCAAAAA 57.462 36.000 0.00 0.00 0.00 1.94
3913 5329 7.318141 CAATAAATTGCTCCATCTTTGTCTGT 58.682 34.615 0.00 0.00 0.00 3.41
4030 5450 5.955488 TCTAAAGTTCCTCGAAGATGACTG 58.045 41.667 0.00 0.00 33.89 3.51
4032 5452 3.584406 AGTTCCTCGAAGATGACTGTG 57.416 47.619 0.00 0.00 33.89 3.66
4091 5511 0.922032 GCGAGAGTTAGCTTTACCGC 59.078 55.000 0.00 0.00 34.71 5.68
4099 5519 0.035820 TAGCTTTACCGCCCCTTGTG 60.036 55.000 0.00 0.00 0.00 3.33
4273 5695 1.746787 TGATGCCAATGTCTGACATGC 59.253 47.619 22.91 21.37 37.97 4.06
4379 5801 7.706607 TGAACACAGTATAATGTAGATGCTCAC 59.293 37.037 5.36 0.00 0.00 3.51
4393 5815 3.808466 TGCTCACATACACTCATCTCC 57.192 47.619 0.00 0.00 0.00 3.71
4396 5818 4.162888 TGCTCACATACACTCATCTCCATT 59.837 41.667 0.00 0.00 0.00 3.16
4403 5825 7.496920 CACATACACTCATCTCCATTAACACAT 59.503 37.037 0.00 0.00 0.00 3.21
4437 5859 6.548993 ACACTATCTCTATGAGCATGTCTGAA 59.451 38.462 0.00 0.00 0.00 3.02
4452 5874 3.006430 TGTCTGAAATACGGAGCTGAACA 59.994 43.478 0.00 0.00 34.24 3.18
4462 5884 3.935203 ACGGAGCTGAACACAATATCTTG 59.065 43.478 0.00 0.00 38.39 3.02
4465 5887 5.423015 GGAGCTGAACACAATATCTTGAGA 58.577 41.667 0.00 0.00 36.20 3.27
4488 5910 1.376037 CGAAGTCACCCCAAGCTCC 60.376 63.158 0.00 0.00 0.00 4.70
4527 5949 2.836944 GGTAAGGACCGCACTTGTC 58.163 57.895 0.00 0.00 35.52 3.18
4551 5973 5.164080 CGAGCTGTTAGTCCTAAAAGTTTCG 60.164 44.000 13.65 13.65 35.50 3.46
4552 5974 5.608449 AGCTGTTAGTCCTAAAAGTTTCGT 58.392 37.500 6.21 0.00 33.83 3.85
4554 5976 5.464389 GCTGTTAGTCCTAAAAGTTTCGTCA 59.536 40.000 6.21 0.00 33.83 4.35
4571 5993 2.296471 CGTCAGGGTGTCACTTTAGTCT 59.704 50.000 2.35 0.00 0.00 3.24
4577 5999 6.269077 TCAGGGTGTCACTTTAGTCTCAATTA 59.731 38.462 2.35 0.00 0.00 1.40
4663 6085 2.045926 GCTCGTTGACCTGCCCAT 60.046 61.111 0.00 0.00 0.00 4.00
4686 6108 2.983030 GCGTTGACCCATGCCACA 60.983 61.111 0.00 0.00 0.00 4.17
4692 6114 2.125147 ACCCATGCCACATCGACG 60.125 61.111 0.00 0.00 0.00 5.12
4699 6121 2.509336 CCACATCGACGGACTGGC 60.509 66.667 0.00 0.00 0.00 4.85
4717 6139 1.310216 GCCACGGCGGTTCCTATTTT 61.310 55.000 13.24 0.00 36.97 1.82
4724 6146 3.119637 CGGCGGTTCCTATTTTGTTTCAT 60.120 43.478 0.00 0.00 0.00 2.57
4725 6147 4.173256 GGCGGTTCCTATTTTGTTTCATG 58.827 43.478 0.00 0.00 0.00 3.07
4761 6183 1.141657 ACCATCATCCTCACATTCCCG 59.858 52.381 0.00 0.00 0.00 5.14
4762 6184 1.544093 CCATCATCCTCACATTCCCGG 60.544 57.143 0.00 0.00 0.00 5.73
4789 6211 7.880713 GTCCTAGATCTATTTCTTCCCCAAATC 59.119 40.741 2.11 0.00 0.00 2.17
4793 6215 4.126823 TCTATTTCTTCCCCAAATCCCCT 58.873 43.478 0.00 0.00 0.00 4.79
4794 6216 2.919772 TTTCTTCCCCAAATCCCCTC 57.080 50.000 0.00 0.00 0.00 4.30
4795 6217 2.074922 TTCTTCCCCAAATCCCCTCT 57.925 50.000 0.00 0.00 0.00 3.69
4808 6230 1.225983 CCCTCTCTCTCTCTCGCCA 59.774 63.158 0.00 0.00 0.00 5.69
4837 6260 2.584608 GCCGTCACACCATAGGCT 59.415 61.111 0.00 0.00 44.06 4.58
4850 6273 1.482593 CATAGGCTTCGGTGAAGGAGT 59.517 52.381 8.49 0.00 39.76 3.85
4868 6291 0.381089 GTATCTCCCACTGGTCGTCG 59.619 60.000 0.00 0.00 0.00 5.12
4887 6310 0.899717 GCAAAGGGGGCATCTTCACA 60.900 55.000 0.00 0.00 0.00 3.58
4910 6333 1.452108 CCCACTCGGATTGCCCTTC 60.452 63.158 0.00 0.00 0.00 3.46
4914 6337 1.134280 CACTCGGATTGCCCTTCAGAT 60.134 52.381 0.00 0.00 0.00 2.90
4953 6376 2.107141 GGAGGGAATCGTCGCCAG 59.893 66.667 0.00 0.00 37.42 4.85
4991 6414 0.038251 CTAGTGTCGCCAGAGTTGCA 60.038 55.000 0.00 0.00 0.00 4.08
5004 6427 4.321718 CAGAGTTGCATGAAAGAGGAGAA 58.678 43.478 0.00 0.00 0.00 2.87
5016 6439 0.617820 GAGGAGAAGGGGTGCCACTA 60.618 60.000 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.866582 GATGACCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
10 11 1.571773 AAAAGGAGGATGACCCCCGG 61.572 60.000 0.00 0.00 36.73 5.73
11 12 0.107165 GAAAAGGAGGATGACCCCCG 60.107 60.000 0.00 0.00 36.73 5.73
12 13 1.299939 AGAAAAGGAGGATGACCCCC 58.700 55.000 0.00 0.00 36.73 5.40
13 14 4.586306 TTAAGAAAAGGAGGATGACCCC 57.414 45.455 0.00 0.00 36.73 4.95
14 15 6.911250 TTTTTAAGAAAAGGAGGATGACCC 57.089 37.500 0.00 0.00 32.16 4.46
38 39 7.441836 GGACACAAACCTCAATAATCCTTTTT 58.558 34.615 0.00 0.00 0.00 1.94
39 40 6.014584 GGGACACAAACCTCAATAATCCTTTT 60.015 38.462 0.00 0.00 0.00 2.27
40 41 5.480422 GGGACACAAACCTCAATAATCCTTT 59.520 40.000 0.00 0.00 0.00 3.11
41 42 5.016831 GGGACACAAACCTCAATAATCCTT 58.983 41.667 0.00 0.00 0.00 3.36
42 43 4.569865 GGGGACACAAACCTCAATAATCCT 60.570 45.833 0.00 0.00 0.00 3.24
43 44 3.699538 GGGGACACAAACCTCAATAATCC 59.300 47.826 0.00 0.00 0.00 3.01
44 45 4.600062 AGGGGACACAAACCTCAATAATC 58.400 43.478 0.00 0.00 0.00 1.75
45 46 4.675063 AGGGGACACAAACCTCAATAAT 57.325 40.909 0.00 0.00 0.00 1.28
46 47 4.105697 AGAAGGGGACACAAACCTCAATAA 59.894 41.667 0.00 0.00 32.29 1.40
47 48 3.655777 AGAAGGGGACACAAACCTCAATA 59.344 43.478 0.00 0.00 32.29 1.90
48 49 2.447047 AGAAGGGGACACAAACCTCAAT 59.553 45.455 0.00 0.00 32.29 2.57
124 125 4.289238 ACTAGATAGATCGTCATCCCGT 57.711 45.455 0.00 0.00 0.00 5.28
128 129 6.442952 ACAGCAAACTAGATAGATCGTCATC 58.557 40.000 0.00 1.46 0.00 2.92
157 158 1.804151 TGATGTAGAAGTGCAAACGCC 59.196 47.619 0.00 0.00 0.00 5.68
183 184 9.909644 TGAGTTTATAGAAGTAACAACAGAGAC 57.090 33.333 0.00 0.00 0.00 3.36
191 192 8.876275 AAACACGTGAGTTTATAGAAGTAACA 57.124 30.769 25.01 0.00 46.40 2.41
210 211 3.424433 GGCCTTCGTCTTATTGAAACACG 60.424 47.826 0.00 0.00 0.00 4.49
246 247 0.378257 CGCACCCAATAGTGATGCAC 59.622 55.000 16.21 0.00 40.34 4.57
247 248 0.747644 CCGCACCCAATAGTGATGCA 60.748 55.000 16.21 0.00 40.34 3.96
251 252 0.251916 CCTTCCGCACCCAATAGTGA 59.748 55.000 0.00 0.00 40.34 3.41
375 379 4.985413 TGAGCTCGAATTTAAATTGCAGG 58.015 39.130 17.98 6.75 0.00 4.85
389 393 3.089284 TCAAGGTGTAGAATGAGCTCGA 58.911 45.455 9.64 0.00 0.00 4.04
393 397 6.810911 TCTATTCTCAAGGTGTAGAATGAGC 58.189 40.000 7.62 0.00 41.40 4.26
438 442 9.056005 ACGCAATCATGATATGTGTTATAGTTT 57.944 29.630 21.24 6.34 34.35 2.66
441 445 6.957635 GCACGCAATCATGATATGTGTTATAG 59.042 38.462 24.21 17.36 35.76 1.31
442 446 6.426328 TGCACGCAATCATGATATGTGTTATA 59.574 34.615 24.21 15.34 35.76 0.98
443 447 5.239087 TGCACGCAATCATGATATGTGTTAT 59.761 36.000 24.21 9.93 35.76 1.89
464 468 7.822161 ATATCCTAACTTAAACATGCATGCA 57.178 32.000 26.53 25.04 0.00 3.96
503 515 9.465985 GAACAACTCCGAAATTTATGGTAAAAA 57.534 29.630 8.39 0.00 0.00 1.94
539 551 7.148787 GCTCATGCTCTTCATCAAAAGAAAAAG 60.149 37.037 0.00 0.00 34.95 2.27
549 561 2.171870 TGGATGCTCATGCTCTTCATCA 59.828 45.455 3.18 0.00 40.48 3.07
556 568 2.686405 TCAACATTGGATGCTCATGCTC 59.314 45.455 3.18 0.00 40.48 4.26
557 569 2.688446 CTCAACATTGGATGCTCATGCT 59.312 45.455 3.18 0.00 40.48 3.79
558 570 2.426024 ACTCAACATTGGATGCTCATGC 59.574 45.455 0.00 0.00 40.20 4.06
559 571 4.082408 ACAACTCAACATTGGATGCTCATG 60.082 41.667 0.00 0.00 0.00 3.07
560 572 4.084287 ACAACTCAACATTGGATGCTCAT 58.916 39.130 0.00 0.00 0.00 2.90
561 573 3.489355 ACAACTCAACATTGGATGCTCA 58.511 40.909 0.00 0.00 0.00 4.26
597 620 2.703409 CATTTTCGCGAGCTCCGG 59.297 61.111 19.88 0.00 39.04 5.14
688 721 4.736631 GCCGGTTTGCTTCGCGTC 62.737 66.667 5.77 0.00 0.00 5.19
721 754 2.835156 TGATTATCAACAGTGGACCGGA 59.165 45.455 9.46 0.00 0.00 5.14
726 759 6.115446 GGACAGATTGATTATCAACAGTGGA 58.885 40.000 10.02 0.00 39.45 4.02
831 1104 2.657237 CGTGGGAGTGGGAGTGTC 59.343 66.667 0.00 0.00 0.00 3.67
1126 1412 5.089396 GAAGTGCTCTTCAGTGAAAAGTC 57.911 43.478 20.75 1.66 46.50 3.01
1147 1433 3.833732 AGAACTGGCGTATCCATCTAGA 58.166 45.455 0.00 0.00 45.50 2.43
1253 1554 2.793946 GCACGGGCACATTGCTAG 59.206 61.111 3.77 0.00 44.28 3.42
1256 1557 4.341502 AACGCACGGGCACATTGC 62.342 61.111 11.77 0.00 44.08 3.56
1257 1558 2.428902 CAACGCACGGGCACATTG 60.429 61.111 11.77 7.23 41.24 2.82
1258 1559 4.341502 GCAACGCACGGGCACATT 62.342 61.111 11.77 0.00 41.24 2.71
1272 1573 3.410631 TCTACTTTGGATCCGTTGCAA 57.589 42.857 7.39 0.00 33.34 4.08
1273 1574 3.410631 TTCTACTTTGGATCCGTTGCA 57.589 42.857 7.39 0.00 0.00 4.08
1274 1575 5.116882 ACTATTCTACTTTGGATCCGTTGC 58.883 41.667 7.39 0.00 0.00 4.17
1276 1577 7.657023 AGTACTATTCTACTTTGGATCCGTT 57.343 36.000 7.39 0.00 0.00 4.44
1278 1579 7.490000 ACAAGTACTATTCTACTTTGGATCCG 58.510 38.462 7.39 0.00 35.20 4.18
1280 1581 9.871238 TGAACAAGTACTATTCTACTTTGGATC 57.129 33.333 16.66 4.76 35.20 3.36
1281 1582 9.654663 GTGAACAAGTACTATTCTACTTTGGAT 57.345 33.333 16.66 0.00 35.20 3.41
1282 1583 8.644216 TGTGAACAAGTACTATTCTACTTTGGA 58.356 33.333 16.66 0.00 35.20 3.53
1283 1584 8.827177 TGTGAACAAGTACTATTCTACTTTGG 57.173 34.615 16.66 0.00 35.20 3.28
1291 1592 9.997482 TTTCAAGTTTGTGAACAAGTACTATTC 57.003 29.630 11.27 11.27 37.24 1.75
1293 1594 9.391006 TCTTTCAAGTTTGTGAACAAGTACTAT 57.609 29.630 0.00 0.00 37.24 2.12
1295 1596 7.681939 TCTTTCAAGTTTGTGAACAAGTACT 57.318 32.000 0.00 0.00 37.24 2.73
1296 1597 8.736751 TTTCTTTCAAGTTTGTGAACAAGTAC 57.263 30.769 0.00 0.00 37.24 2.73
1297 1598 9.187455 GTTTTCTTTCAAGTTTGTGAACAAGTA 57.813 29.630 0.00 0.00 37.24 2.24
1299 1600 8.003784 GTGTTTTCTTTCAAGTTTGTGAACAAG 58.996 33.333 0.00 0.00 37.24 3.16
1300 1601 7.708752 AGTGTTTTCTTTCAAGTTTGTGAACAA 59.291 29.630 0.00 0.00 37.24 2.83
1301 1602 7.206687 AGTGTTTTCTTTCAAGTTTGTGAACA 58.793 30.769 0.00 0.00 37.24 3.18
1302 1603 7.595130 AGAGTGTTTTCTTTCAAGTTTGTGAAC 59.405 33.333 0.00 0.00 37.24 3.18
1304 1605 7.214467 AGAGTGTTTTCTTTCAAGTTTGTGA 57.786 32.000 0.00 0.00 0.00 3.58
1305 1606 7.382218 ACAAGAGTGTTTTCTTTCAAGTTTGTG 59.618 33.333 0.00 0.00 35.28 3.33
1306 1607 7.433680 ACAAGAGTGTTTTCTTTCAAGTTTGT 58.566 30.769 0.00 0.00 35.28 2.83
1307 1608 7.873739 ACAAGAGTGTTTTCTTTCAAGTTTG 57.126 32.000 0.00 0.00 35.28 2.93
1366 1667 9.708222 CCTGAGAAATATATTTTGAGTGAAACG 57.292 33.333 11.92 0.00 45.86 3.60
1370 1671 9.739276 ACAACCTGAGAAATATATTTTGAGTGA 57.261 29.630 11.92 0.00 0.00 3.41
1381 1682 7.363268 GCCTCATCAAAACAACCTGAGAAATAT 60.363 37.037 0.00 0.00 36.32 1.28
1382 1683 6.071952 GCCTCATCAAAACAACCTGAGAAATA 60.072 38.462 0.00 0.00 36.32 1.40
1383 1684 5.279156 GCCTCATCAAAACAACCTGAGAAAT 60.279 40.000 0.00 0.00 36.32 2.17
1384 1685 4.037923 GCCTCATCAAAACAACCTGAGAAA 59.962 41.667 0.00 0.00 36.32 2.52
1385 1686 3.569701 GCCTCATCAAAACAACCTGAGAA 59.430 43.478 0.00 0.00 36.32 2.87
1387 1688 2.095567 CGCCTCATCAAAACAACCTGAG 60.096 50.000 0.00 0.00 34.48 3.35
1388 1689 1.879380 CGCCTCATCAAAACAACCTGA 59.121 47.619 0.00 0.00 0.00 3.86
1389 1690 1.879380 TCGCCTCATCAAAACAACCTG 59.121 47.619 0.00 0.00 0.00 4.00
1390 1691 2.154462 CTCGCCTCATCAAAACAACCT 58.846 47.619 0.00 0.00 0.00 3.50
1391 1692 1.200020 CCTCGCCTCATCAAAACAACC 59.800 52.381 0.00 0.00 0.00 3.77
1392 1693 1.200020 CCCTCGCCTCATCAAAACAAC 59.800 52.381 0.00 0.00 0.00 3.32
1393 1694 1.073125 TCCCTCGCCTCATCAAAACAA 59.927 47.619 0.00 0.00 0.00 2.83
1394 1695 0.690192 TCCCTCGCCTCATCAAAACA 59.310 50.000 0.00 0.00 0.00 2.83
1395 1696 1.373570 CTCCCTCGCCTCATCAAAAC 58.626 55.000 0.00 0.00 0.00 2.43
1396 1697 0.253044 CCTCCCTCGCCTCATCAAAA 59.747 55.000 0.00 0.00 0.00 2.44
1397 1698 1.626356 CCCTCCCTCGCCTCATCAAA 61.626 60.000 0.00 0.00 0.00 2.69
1398 1699 2.066393 CCCTCCCTCGCCTCATCAA 61.066 63.158 0.00 0.00 0.00 2.57
1399 1700 2.317992 ATCCCTCCCTCGCCTCATCA 62.318 60.000 0.00 0.00 0.00 3.07
1400 1701 1.535202 ATCCCTCCCTCGCCTCATC 60.535 63.158 0.00 0.00 0.00 2.92
1401 1702 1.840650 CATCCCTCCCTCGCCTCAT 60.841 63.158 0.00 0.00 0.00 2.90
1402 1703 2.444706 CATCCCTCCCTCGCCTCA 60.445 66.667 0.00 0.00 0.00 3.86
1403 1704 2.444895 ACATCCCTCCCTCGCCTC 60.445 66.667 0.00 0.00 0.00 4.70
1404 1705 2.611964 ATCACATCCCTCCCTCGCCT 62.612 60.000 0.00 0.00 0.00 5.52
1405 1706 1.700042 AATCACATCCCTCCCTCGCC 61.700 60.000 0.00 0.00 0.00 5.54
1406 1707 0.533755 CAATCACATCCCTCCCTCGC 60.534 60.000 0.00 0.00 0.00 5.03
1407 1708 0.533755 GCAATCACATCCCTCCCTCG 60.534 60.000 0.00 0.00 0.00 4.63
1408 1709 0.842635 AGCAATCACATCCCTCCCTC 59.157 55.000 0.00 0.00 0.00 4.30
1409 1710 1.302907 AAGCAATCACATCCCTCCCT 58.697 50.000 0.00 0.00 0.00 4.20
1410 1711 2.027385 GAAAGCAATCACATCCCTCCC 58.973 52.381 0.00 0.00 0.00 4.30
1411 1712 2.726821 TGAAAGCAATCACATCCCTCC 58.273 47.619 0.00 0.00 0.00 4.30
1412 1713 4.012374 TCTTGAAAGCAATCACATCCCTC 58.988 43.478 0.00 0.00 32.68 4.30
1413 1714 4.038271 TCTTGAAAGCAATCACATCCCT 57.962 40.909 0.00 0.00 32.68 4.20
1414 1715 4.996788 ATCTTGAAAGCAATCACATCCC 57.003 40.909 0.00 0.00 32.68 3.85
1418 1719 8.469200 CCCTTTATTATCTTGAAAGCAATCACA 58.531 33.333 0.00 0.00 32.68 3.58
1419 1720 8.470002 ACCCTTTATTATCTTGAAAGCAATCAC 58.530 33.333 0.00 0.00 32.68 3.06
1420 1721 8.593945 ACCCTTTATTATCTTGAAAGCAATCA 57.406 30.769 0.00 0.00 32.68 2.57
1421 1722 9.875691 AAACCCTTTATTATCTTGAAAGCAATC 57.124 29.630 0.00 0.00 32.68 2.67
1423 1724 9.705290 GAAAACCCTTTATTATCTTGAAAGCAA 57.295 29.630 0.00 0.00 0.00 3.91
1424 1725 9.088987 AGAAAACCCTTTATTATCTTGAAAGCA 57.911 29.630 0.00 0.00 0.00 3.91
1425 1726 9.929180 AAGAAAACCCTTTATTATCTTGAAAGC 57.071 29.630 0.00 0.00 0.00 3.51
1436 1737 8.713971 ACTCCAATTTGAAGAAAACCCTTTATT 58.286 29.630 0.00 0.00 0.00 1.40
1441 1742 6.610830 TCTACTCCAATTTGAAGAAAACCCT 58.389 36.000 0.00 0.00 0.00 4.34
1444 1745 8.841300 ACTTCTCTACTCCAATTTGAAGAAAAC 58.159 33.333 0.00 0.00 35.05 2.43
1447 1748 6.936900 CCACTTCTCTACTCCAATTTGAAGAA 59.063 38.462 0.00 0.00 35.05 2.52
1453 1754 3.589288 AGCCCACTTCTCTACTCCAATTT 59.411 43.478 0.00 0.00 0.00 1.82
1455 1756 2.839228 AGCCCACTTCTCTACTCCAAT 58.161 47.619 0.00 0.00 0.00 3.16
1456 1757 2.327325 AGCCCACTTCTCTACTCCAA 57.673 50.000 0.00 0.00 0.00 3.53
1459 1760 5.112686 CAACAATAGCCCACTTCTCTACTC 58.887 45.833 0.00 0.00 0.00 2.59
1461 2534 3.623510 GCAACAATAGCCCACTTCTCTAC 59.376 47.826 0.00 0.00 0.00 2.59
1463 2536 2.040278 TGCAACAATAGCCCACTTCTCT 59.960 45.455 0.00 0.00 0.00 3.10
1469 2542 3.120234 GCATTTTTGCAACAATAGCCCAC 60.120 43.478 10.36 0.00 34.41 4.61
1471 2544 2.419673 GGCATTTTTGCAACAATAGCCC 59.580 45.455 25.42 16.78 36.33 5.19
1473 2546 3.497640 TGTGGCATTTTTGCAACAATAGC 59.502 39.130 10.36 14.58 44.85 2.97
1479 2552 4.260579 GGTAAGTTGTGGCATTTTTGCAAC 60.261 41.667 0.00 7.98 39.13 4.17
1481 2554 3.133721 AGGTAAGTTGTGGCATTTTTGCA 59.866 39.130 0.00 0.00 36.33 4.08
1482 2555 3.727726 AGGTAAGTTGTGGCATTTTTGC 58.272 40.909 0.00 0.00 0.00 3.68
1486 2559 1.539827 GCGAGGTAAGTTGTGGCATTT 59.460 47.619 0.00 0.00 0.00 2.32
1487 2560 1.165270 GCGAGGTAAGTTGTGGCATT 58.835 50.000 0.00 0.00 0.00 3.56
1488 2561 0.036164 TGCGAGGTAAGTTGTGGCAT 59.964 50.000 0.00 0.00 0.00 4.40
1489 2562 0.602638 CTGCGAGGTAAGTTGTGGCA 60.603 55.000 0.00 0.00 0.00 4.92
1490 2563 1.912371 GCTGCGAGGTAAGTTGTGGC 61.912 60.000 0.00 0.00 0.00 5.01
1491 2564 1.298859 GGCTGCGAGGTAAGTTGTGG 61.299 60.000 0.00 0.00 0.00 4.17
1492 2565 0.602638 TGGCTGCGAGGTAAGTTGTG 60.603 55.000 0.00 0.00 0.00 3.33
1493 2566 0.324943 ATGGCTGCGAGGTAAGTTGT 59.675 50.000 0.00 0.00 0.00 3.32
1494 2567 1.453155 AATGGCTGCGAGGTAAGTTG 58.547 50.000 0.00 0.00 0.00 3.16
1495 2568 2.500098 TCTAATGGCTGCGAGGTAAGTT 59.500 45.455 0.00 0.00 0.00 2.66
1496 2569 2.108168 TCTAATGGCTGCGAGGTAAGT 58.892 47.619 0.00 0.00 0.00 2.24
1497 2570 2.890808 TCTAATGGCTGCGAGGTAAG 57.109 50.000 0.00 0.00 0.00 2.34
1498 2571 2.434336 ACATCTAATGGCTGCGAGGTAA 59.566 45.455 0.00 0.00 33.60 2.85
1499 2572 2.039418 ACATCTAATGGCTGCGAGGTA 58.961 47.619 0.00 0.00 33.60 3.08
1500 2573 0.833287 ACATCTAATGGCTGCGAGGT 59.167 50.000 0.00 0.00 33.60 3.85
1501 2574 2.297315 TCTACATCTAATGGCTGCGAGG 59.703 50.000 0.00 0.00 33.60 4.63
1502 2575 3.650070 TCTACATCTAATGGCTGCGAG 57.350 47.619 0.00 0.00 33.60 5.03
1503 2576 3.829026 AGATCTACATCTAATGGCTGCGA 59.171 43.478 0.00 0.00 37.63 5.10
1504 2577 4.185467 AGATCTACATCTAATGGCTGCG 57.815 45.455 0.00 0.00 37.63 5.18
1514 2587 9.152327 TCATTTCTGACCATTAGATCTACATCT 57.848 33.333 0.67 0.00 42.48 2.90
1515 2588 9.202273 GTCATTTCTGACCATTAGATCTACATC 57.798 37.037 0.67 0.00 45.06 3.06
1530 2603 1.667724 CTGCCATCCGTCATTTCTGAC 59.332 52.381 0.00 0.00 46.89 3.51
1531 2604 1.554617 TCTGCCATCCGTCATTTCTGA 59.445 47.619 0.00 0.00 0.00 3.27
1532 2605 1.667724 GTCTGCCATCCGTCATTTCTG 59.332 52.381 0.00 0.00 0.00 3.02
1533 2606 1.278985 TGTCTGCCATCCGTCATTTCT 59.721 47.619 0.00 0.00 0.00 2.52
1534 2607 1.398390 GTGTCTGCCATCCGTCATTTC 59.602 52.381 0.00 0.00 0.00 2.17
1535 2608 1.271325 TGTGTCTGCCATCCGTCATTT 60.271 47.619 0.00 0.00 0.00 2.32
1536 2609 0.324614 TGTGTCTGCCATCCGTCATT 59.675 50.000 0.00 0.00 0.00 2.57
1537 2610 0.391661 GTGTGTCTGCCATCCGTCAT 60.392 55.000 0.00 0.00 0.00 3.06
1538 2611 1.005037 GTGTGTCTGCCATCCGTCA 60.005 57.895 0.00 0.00 0.00 4.35
1539 2612 1.741770 GGTGTGTCTGCCATCCGTC 60.742 63.158 0.00 0.00 0.00 4.79
1540 2613 1.841302 ATGGTGTGTCTGCCATCCGT 61.841 55.000 0.00 0.00 41.24 4.69
1541 2614 1.078214 ATGGTGTGTCTGCCATCCG 60.078 57.895 0.00 0.00 41.24 4.18
1545 2618 0.691904 TGATGATGGTGTGTCTGCCA 59.308 50.000 0.00 0.00 39.33 4.92
1546 2619 1.089920 GTGATGATGGTGTGTCTGCC 58.910 55.000 0.00 0.00 0.00 4.85
1547 2620 1.089920 GGTGATGATGGTGTGTCTGC 58.910 55.000 0.00 0.00 0.00 4.26
1548 2621 2.477845 TGGTGATGATGGTGTGTCTG 57.522 50.000 0.00 0.00 0.00 3.51
1549 2622 2.373169 AGTTGGTGATGATGGTGTGTCT 59.627 45.455 0.00 0.00 0.00 3.41
1550 2623 2.485426 CAGTTGGTGATGATGGTGTGTC 59.515 50.000 0.00 0.00 0.00 3.67
1551 2624 2.106338 TCAGTTGGTGATGATGGTGTGT 59.894 45.455 0.00 0.00 0.00 3.72
1552 2625 2.745821 CTCAGTTGGTGATGATGGTGTG 59.254 50.000 0.00 0.00 33.51 3.82
1553 2626 2.373169 ACTCAGTTGGTGATGATGGTGT 59.627 45.455 0.00 0.00 33.51 4.16
1554 2627 3.005554 GACTCAGTTGGTGATGATGGTG 58.994 50.000 0.00 0.00 33.51 4.17
1555 2628 2.909006 AGACTCAGTTGGTGATGATGGT 59.091 45.455 0.00 0.00 33.51 3.55
1556 2629 3.623906 AGACTCAGTTGGTGATGATGG 57.376 47.619 0.00 0.00 33.51 3.51
1557 2630 5.954296 AAAAGACTCAGTTGGTGATGATG 57.046 39.130 0.00 0.00 33.51 3.07
1558 2631 7.989741 CCTATAAAAGACTCAGTTGGTGATGAT 59.010 37.037 0.00 0.00 33.51 2.45
1559 2632 7.180229 TCCTATAAAAGACTCAGTTGGTGATGA 59.820 37.037 0.00 0.00 33.51 2.92
1560 2633 7.331026 TCCTATAAAAGACTCAGTTGGTGATG 58.669 38.462 0.00 0.00 33.51 3.07
1561 2634 7.181125 ACTCCTATAAAAGACTCAGTTGGTGAT 59.819 37.037 0.00 0.00 33.51 3.06
1562 2635 6.497259 ACTCCTATAAAAGACTCAGTTGGTGA 59.503 38.462 0.00 0.00 0.00 4.02
1563 2636 6.702329 ACTCCTATAAAAGACTCAGTTGGTG 58.298 40.000 0.00 0.00 0.00 4.17
1564 2637 6.936968 ACTCCTATAAAAGACTCAGTTGGT 57.063 37.500 0.00 0.00 0.00 3.67
1565 2638 8.294954 TCTACTCCTATAAAAGACTCAGTTGG 57.705 38.462 0.00 0.00 0.00 3.77
1566 2639 9.179909 TCTCTACTCCTATAAAAGACTCAGTTG 57.820 37.037 0.00 0.00 0.00 3.16
1567 2640 9.930158 ATCTCTACTCCTATAAAAGACTCAGTT 57.070 33.333 0.00 0.00 0.00 3.16
1572 2645 9.984590 GGGATATCTCTACTCCTATAAAAGACT 57.015 37.037 2.05 0.00 0.00 3.24
1573 2646 9.756571 TGGGATATCTCTACTCCTATAAAAGAC 57.243 37.037 3.79 0.00 0.00 3.01
1574 2647 9.983024 CTGGGATATCTCTACTCCTATAAAAGA 57.017 37.037 3.79 0.00 0.00 2.52
1575 2648 9.762381 ACTGGGATATCTCTACTCCTATAAAAG 57.238 37.037 3.79 0.00 0.00 2.27
1576 2649 9.535170 CACTGGGATATCTCTACTCCTATAAAA 57.465 37.037 3.79 0.00 0.00 1.52
1577 2650 7.616150 GCACTGGGATATCTCTACTCCTATAAA 59.384 40.741 3.79 0.00 0.00 1.40
1578 2651 7.120051 GCACTGGGATATCTCTACTCCTATAA 58.880 42.308 3.79 0.00 0.00 0.98
1579 2652 6.217693 TGCACTGGGATATCTCTACTCCTATA 59.782 42.308 3.79 0.00 0.00 1.31
1580 2653 5.015710 TGCACTGGGATATCTCTACTCCTAT 59.984 44.000 3.79 0.00 0.00 2.57
1581 2654 4.354087 TGCACTGGGATATCTCTACTCCTA 59.646 45.833 3.79 0.00 0.00 2.94
1582 2655 3.141083 TGCACTGGGATATCTCTACTCCT 59.859 47.826 3.79 0.00 0.00 3.69
1583 2656 3.257127 GTGCACTGGGATATCTCTACTCC 59.743 52.174 10.32 0.00 0.00 3.85
1584 2657 4.022416 CAGTGCACTGGGATATCTCTACTC 60.022 50.000 34.65 0.00 40.20 2.59
1585 2658 3.894427 CAGTGCACTGGGATATCTCTACT 59.106 47.826 34.65 0.00 40.20 2.57
1586 2659 4.250116 CAGTGCACTGGGATATCTCTAC 57.750 50.000 34.65 0.00 40.20 2.59
1605 2678 1.939934 TGGTGAAGAAGCGACAAACAG 59.060 47.619 0.00 0.00 0.00 3.16
1606 2679 2.031258 TGGTGAAGAAGCGACAAACA 57.969 45.000 0.00 0.00 0.00 2.83
1607 2680 3.251004 AGAATGGTGAAGAAGCGACAAAC 59.749 43.478 0.00 0.00 0.00 2.93
1611 2685 3.067106 TCAAGAATGGTGAAGAAGCGAC 58.933 45.455 0.00 0.00 0.00 5.19
1659 2733 5.006941 CCTGCATGCCTTAACATTAAATTGC 59.993 40.000 16.68 0.00 0.00 3.56
1726 2808 2.797156 CACAAGTATCGCCAGTATCTGC 59.203 50.000 0.00 0.00 0.00 4.26
1786 2868 2.261671 GTCAGTGACCGTCGGCAT 59.738 61.111 12.28 0.00 0.00 4.40
1819 2901 6.660949 ACATGAGAAAAATTACTCCTCCAAGG 59.339 38.462 0.00 0.00 36.46 3.61
1831 2913 7.124599 TCCATGGAAGCATACATGAGAAAAATT 59.875 33.333 15.74 0.00 45.55 1.82
1889 2982 2.684374 CCATGTCAATTCGGAGCATGAA 59.316 45.455 0.00 0.00 39.21 2.57
1939 3032 2.398554 CCAAGCACCCACGAATCCG 61.399 63.158 0.00 0.00 42.50 4.18
2312 3406 6.668541 ATGAAGTCAACTGATGATTAACCG 57.331 37.500 0.00 0.00 40.97 4.44
2325 3419 7.441458 ACCACTAAAGTCAGTTATGAAGTCAAC 59.559 37.037 0.00 0.00 37.14 3.18
2361 3455 2.514803 ACATGGCAAGGTGAGTTAACC 58.485 47.619 0.88 0.00 40.85 2.85
2368 3462 4.211125 TGAAAAAGTACATGGCAAGGTGA 58.789 39.130 0.00 0.00 0.00 4.02
2468 3562 3.261580 TGCGTGGAATCATCTAGTTGTG 58.738 45.455 0.83 0.00 0.00 3.33
2485 3579 0.950836 TTGCTGCAGTAAACATGCGT 59.049 45.000 15.35 0.00 46.87 5.24
2489 3583 2.095567 CGAGCTTTGCTGCAGTAAACAT 60.096 45.455 23.84 15.68 39.88 2.71
2490 3584 1.264020 CGAGCTTTGCTGCAGTAAACA 59.736 47.619 23.84 6.77 39.88 2.83
2502 3596 7.087007 TCATAGCTATATGTCTTCGAGCTTTG 58.913 38.462 5.77 3.45 40.55 2.77
2529 3749 2.598000 TTGCGGTGCGTTAACAATAC 57.402 45.000 6.39 1.17 0.00 1.89
2551 3771 7.995289 ACTGAAGTCATTTTAACACAATGTGA 58.005 30.769 21.34 0.00 36.96 3.58
2590 3811 3.121929 AGAGGAAGTGGAGAAGGCATA 57.878 47.619 0.00 0.00 0.00 3.14
2644 3865 2.429610 TCGATTAGAGTTGGCCCTACAC 59.570 50.000 0.00 0.00 0.00 2.90
2741 3962 8.838741 ACCCACTACCTATTTTTCCTAAACATA 58.161 33.333 0.00 0.00 0.00 2.29
2857 4080 1.442520 CAAAACTGCATCACGGCCG 60.443 57.895 26.86 26.86 0.00 6.13
2861 4084 6.141211 GCATATATCAACAAAACTGCATCACG 59.859 38.462 0.00 0.00 0.00 4.35
2974 4207 7.649057 TGTATAGAACATGAGGAATGACTACG 58.351 38.462 0.00 0.00 38.72 3.51
2977 4210 7.904558 TCTGTATAGAACATGAGGAATGACT 57.095 36.000 0.00 0.00 38.72 3.41
3040 4273 1.907807 GGGGCATGCCTGTTTGACA 60.908 57.895 34.70 0.00 36.10 3.58
3084 4317 9.443283 GATGATTGTGAATTAACTGCACTAATC 57.557 33.333 0.00 0.00 34.47 1.75
3146 4379 6.763135 GTCCATTTATCAGTGTCATTGAGCTA 59.237 38.462 4.25 0.00 0.00 3.32
3272 4505 4.332543 GTCACACACAGAGAAACAACATCA 59.667 41.667 0.00 0.00 0.00 3.07
3278 4511 3.558931 ATGGTCACACACAGAGAAACA 57.441 42.857 0.00 0.00 0.00 2.83
3279 4512 3.251004 GGAATGGTCACACACAGAGAAAC 59.749 47.826 0.00 0.00 0.00 2.78
3286 4519 3.130164 CACAAAAGGAATGGTCACACACA 59.870 43.478 0.00 0.00 0.00 3.72
3415 4648 1.916181 ACACTGGAAGATAACAGGGGG 59.084 52.381 0.00 0.00 42.35 5.40
3460 4693 5.086104 ACGATAGCCATGTTAAACTCTGT 57.914 39.130 0.00 0.00 42.67 3.41
3566 4799 2.588027 TGTACAGTTTGCAGTCGACA 57.412 45.000 19.50 0.00 0.00 4.35
3651 4885 9.507280 CTGATAAGGTTACGTATTTCGAAGTTA 57.493 33.333 0.00 0.00 42.86 2.24
3653 4887 7.765307 TCTGATAAGGTTACGTATTTCGAAGT 58.235 34.615 0.00 0.00 42.86 3.01
3692 4926 4.638865 AGGAAAAGTTTCACGTAAGCACTT 59.361 37.500 6.15 0.00 38.92 3.16
3841 5075 9.626045 CGCTATAATTTCAGGAAACTTCTTTTT 57.374 29.630 0.00 0.00 40.21 1.94
3842 5076 8.244113 CCGCTATAATTTCAGGAAACTTCTTTT 58.756 33.333 0.00 0.00 40.21 2.27
3843 5077 7.610305 TCCGCTATAATTTCAGGAAACTTCTTT 59.390 33.333 0.00 0.00 40.21 2.52
3844 5078 7.110155 TCCGCTATAATTTCAGGAAACTTCTT 58.890 34.615 0.00 0.00 40.21 2.52
3845 5079 6.650120 TCCGCTATAATTTCAGGAAACTTCT 58.350 36.000 0.00 0.00 40.21 2.85
3846 5080 6.920569 TCCGCTATAATTTCAGGAAACTTC 57.079 37.500 0.00 0.00 40.21 3.01
3913 5329 9.747898 AACCCATACAAACATAAGTCAAGATAA 57.252 29.630 0.00 0.00 0.00 1.75
4030 5450 6.459923 AGAGAGGATTCACTTCAAAGTACAC 58.540 40.000 0.00 0.00 37.08 2.90
4032 5452 8.470805 TCATAGAGAGGATTCACTTCAAAGTAC 58.529 37.037 0.00 0.00 37.08 2.73
4091 5511 5.920193 ATGAACAATGTTATCACAAGGGG 57.080 39.130 0.00 0.00 36.16 4.79
4099 5519 8.025445 AGCTGAACTTGAATGAACAATGTTATC 58.975 33.333 0.00 0.00 0.00 1.75
4263 5685 2.668457 CCAGTTTACTCGCATGTCAGAC 59.332 50.000 0.00 0.00 0.00 3.51
4273 5695 7.148523 GGTTGGTAAGTTATTCCAGTTTACTCG 60.149 40.741 0.00 0.00 32.63 4.18
4379 5801 7.496920 ACATGTGTTAATGGAGATGAGTGTATG 59.503 37.037 0.00 0.00 31.46 2.39
4393 5815 2.225255 TGTGTGCGGACATGTGTTAATG 59.775 45.455 14.45 0.00 33.63 1.90
4396 5818 1.202592 AGTGTGTGCGGACATGTGTTA 60.203 47.619 14.45 0.00 33.63 2.41
4403 5825 1.545841 AGAGATAGTGTGTGCGGACA 58.454 50.000 5.33 5.33 0.00 4.02
4437 5859 5.918608 AGATATTGTGTTCAGCTCCGTATT 58.081 37.500 0.00 0.00 0.00 1.89
4452 5874 7.276658 GTGACTTCGTCAATCTCAAGATATTGT 59.723 37.037 0.00 0.00 44.49 2.71
4462 5884 1.275291 TGGGGTGACTTCGTCAATCTC 59.725 52.381 0.00 0.00 44.49 2.75
4465 5887 1.882352 GCTTGGGGTGACTTCGTCAAT 60.882 52.381 0.00 0.00 44.49 2.57
4480 5902 1.134788 ACCGAATACGAAGGAGCTTGG 60.135 52.381 0.00 0.00 42.66 3.61
4481 5903 2.295253 ACCGAATACGAAGGAGCTTG 57.705 50.000 0.00 0.00 42.66 4.01
4483 5905 3.329929 AAAACCGAATACGAAGGAGCT 57.670 42.857 0.00 0.00 42.66 4.09
4488 5910 3.126343 CCCTCCAAAAACCGAATACGAAG 59.874 47.826 0.00 0.00 42.66 3.79
4520 5942 2.029828 AGGACTAACAGCTCGACAAGTG 60.030 50.000 0.00 0.00 0.00 3.16
4522 5944 4.436242 TTAGGACTAACAGCTCGACAAG 57.564 45.455 0.00 0.00 0.00 3.16
4527 5949 5.164080 CGAAACTTTTAGGACTAACAGCTCG 60.164 44.000 12.11 12.11 31.50 5.03
4551 5973 3.321111 TGAGACTAAAGTGACACCCTGAC 59.679 47.826 0.84 0.00 0.00 3.51
4552 5974 3.572642 TGAGACTAAAGTGACACCCTGA 58.427 45.455 0.84 0.00 0.00 3.86
4554 5976 5.568620 AATTGAGACTAAAGTGACACCCT 57.431 39.130 0.84 0.00 0.00 4.34
4577 5999 9.995003 TTAGGACTTAAATGTGCATTTTGAAAT 57.005 25.926 14.29 0.00 40.99 2.17
4641 6063 3.016474 GCAGGTCAACGAGCGCTTC 62.016 63.158 13.26 3.81 35.00 3.86
4663 6085 4.634703 ATGGGTCAACGCGCCACA 62.635 61.111 5.73 0.00 0.00 4.17
4686 6108 4.129737 CGTGGCCAGTCCGTCGAT 62.130 66.667 5.11 0.00 37.10 3.59
4699 6121 0.450184 CAAAATAGGAACCGCCGTGG 59.550 55.000 0.00 0.00 43.43 4.94
4725 6147 7.342026 AGGATGATGGTTTATAAGTGGTTTTCC 59.658 37.037 0.00 0.00 41.14 3.13
4761 6183 4.532916 GGGGAAGAAATAGATCTAGGACCC 59.467 50.000 8.70 13.11 32.70 4.46
4762 6184 5.155905 TGGGGAAGAAATAGATCTAGGACC 58.844 45.833 8.70 5.80 0.00 4.46
4789 6211 1.528309 GGCGAGAGAGAGAGAGGGG 60.528 68.421 0.00 0.00 0.00 4.79
4793 6215 1.106351 GCCATGGCGAGAGAGAGAGA 61.106 60.000 23.48 0.00 0.00 3.10
4794 6216 1.363443 GCCATGGCGAGAGAGAGAG 59.637 63.158 23.48 0.00 0.00 3.20
4795 6217 3.531283 GCCATGGCGAGAGAGAGA 58.469 61.111 23.48 0.00 0.00 3.10
4822 6244 0.806102 CCGAAGCCTATGGTGTGACG 60.806 60.000 0.00 0.00 0.00 4.35
4850 6273 1.381928 GCGACGACCAGTGGGAGATA 61.382 60.000 15.21 0.00 38.05 1.98
4863 6286 3.969250 GATGCCCCCTTTGCGACGA 62.969 63.158 0.00 0.00 0.00 4.20
4868 6291 0.899717 TGTGAAGATGCCCCCTTTGC 60.900 55.000 0.00 0.00 0.00 3.68
4887 6310 2.671070 CAATCCGAGTGGGTGCCT 59.329 61.111 0.00 0.00 37.00 4.75
4936 6359 2.107141 CTGGCGACGATTCCCTCC 59.893 66.667 0.00 0.00 0.00 4.30
4991 6414 1.283321 GCACCCCTTCTCCTCTTTCAT 59.717 52.381 0.00 0.00 0.00 2.57
5004 6427 1.616628 CCCTCTTAGTGGCACCCCT 60.617 63.158 15.27 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.