>input_sequence_24924
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----ATGGCCGGCAGCAGCACCAGCACCTTCGTCATCAGGTGGATCAACTTCCTCACCATGGTCAGTCAGCTTCCCTTCC
T-TCCTCGCCCCCCTTTTCCCAGTTGCTCCCCGATGGCCGACCCGCTTCGAGACTTTTCACTGAAGAGCACTT-------
---CTAGATGGATACGCCAGTTC-----TTGATTTGTTCCCGTTCCATCTGGTCTCTTTGCTCAGCGGTGCCCCTCTGTT
GAGCTTGAGCTGTACCGCATCGTTATCCAGTTACTAGCAATGTGCCCGTGCGTTGCAACGGATCCAAAGTAGAATAGTAC
TTGTTCACAAACTTGAAAGAAAACACTCTTGTTTTGATAGACATATATACCACTAAAAATATATTACGTTTCACTCAAAA
TATATTTCTCAGGTTGTTTTGATGAGGCGAGGGAGGGATGTGATTGCTTTCAAGATAATAAAGGGTTTTCTTCAAATTGG
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----------------------------------------------------AGTAGAGAAGTGGGCTATTGTTGCAAAA
ATGCCACAACTTACCTCGCAGCCATTAGATGTAGATCTAATGGTCAGAAATGACGGATGGCAGACACACCATCATCACCA
ACTGAGTCTTTTATAGGAGTAGAGATATCCCAGTGCACTG-TTTGTCGCTTCTTCACCATTCTTGACATCTTTCGTTTGG
AACTCTTTGTTTGC--------AATTTAATGTTAAGGCATGCAGGTAGGGATCCGCACATCATGATGCTCCTCTTGCTCT
TTGTTGAGCAGATACTGGCGATACTTGTGGTGGGTTTTGGGTTCTGGATGAGCACCCACAATGACGAATGCCGACGGTCA
CTGACGATCCCTGTCATGGGCCTTGGAGGAGTAATTTTTCTCATGT----ATGCTTCCATGGAATTGTATCATATTATTC
CCACCACGTT-------AGTATTCATGCTCCGAATTGACATGGTTCAATGCCGATGCCGCAGGTCGCTGGCCGGATTCGT
GGGTGCTTGGAAGAACATTTCTTGCTTGCTTTGGACAGTATCCTTTTTGTGGCATTTGATGCATAAACTATTAAACTTAC
GGCGGCATGAGTGCTGGTTGGTGCTGCTGATGTTGTCTGCTCTCTTGATACCCTTGGGGTTATTTGTCGCCTTGACATGT
GGGTATCTAGTATCTAATAATGCTGTTCGTGGTCCTGGTGGCAATCATGGTCTTCACAGTGCTTGCGTAAGTTCCTGTGA
TTCATTTGGGATAGCAC-TAGCACAACCTTTCCAGTTGGTGGCAATCATTGTGTACTTTTTATTTGAAAATTAGCTGCGG
TGTGCACTGATTGGTTGATGGAATTAAATCCTGGTGCAAGTTCAGCGGTTAATCATCAGTTGACTTCATAACTGACTTTA
GTGGTTGCAAGTTGGGTTAACTCACCTTGCCATGTACTTTTTCAGGTTTATCATTACAAATACTGGAACTGGTCATGCTG
TTCCTGGGTCCAGGTATCTGACTGTATATTACTAATGTTTACACAACTAGATGATTCCACGCATGTTTACTGCAGC-AAA
GCTCGAAGACATA-------------------------------------------------------------------
----------------------------------------------------------TAGCTATGAAGTATTGTTAACG
CACCGCAAACTCACATTGTGTTAAA-ATGACTTCAGTATCTATGGCATGTTATGCCTTCTCCACTTCCTCTTTTCACTTT
TTAATCCAAATACCAATAATCAATGTGTAGGGCCAACTCTAATCGATTCTCCACACCACATGCATGAGATGGCAGGTGAT
GACATGACAGACATGCATTACCTGCTGATGTGGCATTCTTGTATGTTTAGG--AAAAATAGGTAGTGGGTCGGAACTATT
TAGGAATAGAGGATGATTGAAATGCGGAACTGACAAGTCGAAGTAATATATCACTATTTGTCTTAAAAGTTGCACTATGC
GGCCGTGATGCAGTTTTGTTGATATATGCGCAGTCGGAAAC----------TGCCTGATTGTCACTACATGAACTGTGAA
TGAAATTTCTTTAAGTAATGGAACACATTGCATGCATATGGTTCTGCGTAGTCATTCCTCATGTTCTATACAGATATAAA
GAGTATCGTCTTCAGGACTACAGTTCTTGGTTTGTCAAACAGGCATGCCCCAACTCTTTGTTTGGAAAATTTCTTTGATT
AGTGCAGTTAATTCACAATCATCTATGCTGGTATAACTCGATTTGTTTATTTTAAATCTAGCTCAATGACACTGATAAAT
GGACTCATCTGAGAAGTTGCCTTGTGAAGTCGGATGATTGCAATAGCTTGTCAAATAGATATAAGGTCTCTTCTCCTTTT
CTGCTCATCCTATTTTATCTGATGTGATGTTGTTTCTCTGTGTGTGACCATTCCTTTTGTGGCGATTTTAGTAATACTGT
TTGATTTCATGCAGACTCTAAAACAATACAAGCTCGCTGAGCTGACTCCCATTGAGTCTGGCTGTTGCCGCCCACCAGCG
GAGTATGCCCCCTGTTATCTTCCAGTGTATTTTGAACGTGCAGTTGCTTTCAACAGAGTTTAACATGGCTATCGTATTTT
TCTGAACCTTGTCAGGTGTGGATATCCAGCTTTGAATGCTTCCAATTTTGATCTGAGCTACCATCCGGTGAGCACAAATG
TCGACTGCAAACTGTACAAAAATGATCGGTTCCTCAGGTGCTATGACTGTAATTCTTGCAAGTAAGCTGT-CCGTCTCCT
GTCATAACTTCGAAATACGTAACCTTATCAGAAATTTCAGAATGTAAGTGCTTACGTGAAACTTTTCCTTCCAGAGCTGG
TGTTGCGCAATACATGAAGACAGAGTGGCGAGTGGTTGCCATCTTCAATGTGATATTGTTTATCATTTTGGTAAGCTTAA
AATTCCCTGAAACATTCTCTCTCTCTCTCTCAAAAAAAAG----------------------------------------
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--------------------------------------------------------------AAGTTTCCTGAAATTATA
GCGGATATACTCTTTCTTCTCAGCAATAAATTGCTCCATCTTTGTCTGTTATCTTGAC----TTATGTTTGTATGGGTTT
GTTTTCGGCCAGTCATTCGTGTACTTTGTTGGCTGCTGCGCACGTCGACATGCTGGAGGTAGCGATTCTAAAGTTCCTCG
AAGATGA-------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G164600
GATGCAGAGGCCGGGGGTCATCCTCCTTTTCTTAAAAAAAAAAGGATTATTGAGGTTTGTGTCCCCTTCTTTGTCTTGCC
AGAGTTGAGATTTTTTGTGTGGGCCCTCCTCGGTGTTGGCTTCTACGGGATGACGATCTATCTAGTTTGCTGTTGTCGGC
GTTTGCACTTCTACATCAATGACGTCTCTGTTGTTACTTCTATAAACTCACGTGTTTCAATAAGACGAAGGCCTAGAGGC
AGCACAGTGCATCACTATTGGGTGCGGAAGGAAGCCAATGCTGATTTCTTCAAGAACTTGCCTGTAATTTTTCATTCCTG
TAAGGACTAATTTTATCTAATATATGGCCTTCAG---TTTTTATTGAAAAAAACAAGCCCTGCAATTTAAATTCGAGCTC
ATTCTACACCTTGAGAATAGAAAACAAACTCATTTGTACGTAAACTATAACACATATCATGATTGCGTGCATGCATGTTT
AAGTTAGG--------ATATTCTTTTCCTGATGTTTTTTACCATAAATTTCGGAGTTGTTCCCAGTTTTGCTTTTTCTTT
TGATGAAGAGCATGAGCATCCAATGTTG----AGTTGTACCCCACCT-------CCCCGCCGGAGCTCGCGAAAATGGGA
CCAAACTGCAAAAAGTGCCGCGGCTGCTATTCAAACCCGACCGAAAAGACCCG----------CATCGGCCTGAGCACCG
GACGCGAAGCAAACCGGCGTCGACTCCGCCCTCTCCGGTCCACTGTTGATAATCAATCTGT-------------------
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-------------------------------------------------------------CCCTCTGACCAGTCGGCCC
CACACCTGCCCGTGCCAAGCTTAACTGCGACCGCTGTCTTCAAGCCCACACAAATCAACAACAGA------------CAC
TCCCACTCCCACGCTGACACCTACCCAGGTGCCGCGCCGCCGGGACCCCAGCCTCGCCGTCTCCGGCGGCGTGCTCCCAG
ATCTCGACTCGCCGGTCCGTCTCGGCTCCGCGCGGAATCGACTGACGGAGGCGGGAGGCCAGCGTCGTCCGCAGCTGATC
CGGGATGGCCGGCAGCAGCACCAGCACCTTCGTCATCAGGTGGATCAACTTCCTCACCATGGTCAGTCAGCTTCCCTTCC
T-TCCTCGCCCCCCTTTTCCCAGTTGCTCCCCGATGGCCGACCCGCTTCGAGACTTTTCACTGAAGAGCACTT-------
---CTAGATGGATACGCCAGTTC-----TTGATTTGTTCCCGTTCCATCTGGTCTCTTTGCTCAGCGGTGCCCCTCTGTT
GAGCTTGAGCTGTACCGCATCGTTATCCAGTTACTAGCAATGTGCCCGTGCGTTGCAACGGATCCAAAGTAGAATAGTAC
TTGTTCACAAACTTGAAAGAAAACACTCTTGTTTTGATAGACATATATACCACTAAAAATATATTACGTTTCACTCAAAA
TATATTTCTCAGGTTGTTTTGATGAGGCGAGGGAGGGATGTGATTGCTTTCAAGATAATAAAGGGTTTTCTTCAAATTGG
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----------------------------------------------------AGTAGAGAAGTGGGCTATTGTTGCAAAA
ATGCCACAACTTACCTCGCAGCCATTAGATGTAGATCTAATGGTCAGAAATGACGGATGGCAGACACACCATCATCACCA
ACTGAGTCTTTTATAGGAGTAGAGATATCCCAGTGCACTG-TTTGTCGCTTCTTCACCATTCTTGACATCTTTCGTTTGG
AACTCTTTGTTTGC--------AATTTAATGTTAAGGCATGCAGGTAGGGATCCGCACATCATGATGCTCCTCTTGCTCT
TTGTTGAGCAGATACTGGCGATACTTGTGGTGGGTTTTGGGTTCTGGATGAGCACCCACAATGACGAATGCCGACGGTCA
CTGACGATCCCTGTCATGGGCCTTGGAGGAGTAATTTTTCTCATGT----ATGCTTCCATGGAATTGTATCATATTATTC
CCACCACGTT-------AGTATTCATGCTCCGAATTGACATGGTTCAATGCCGATGCCGCAGGTCGCTGGCCGGATTCGT
GGGTGCTTGGAAGAACATTTCTTGCTTGCTTTGGACAGTATCCTTTTTGTGGCATTTGATGCATAAACTATTAAACTTAC
GGCGGCATGAGTGCTGGTTGGTGCTGCTGATGTTGTCTGCTCTCTTGATACCCTTGGGGTTATTTGTCGCCTTGACATGT
GGGTATCTAGTATCTAATAATGCTGTTCGTGGTCCTGGTGGCAATCATGGTCTTCACAGTGCTTGCGTAAGTTCCTGTGA
TTCATTTGGGATAGCAC-TAGCACAACCTTTCCAGTTGGTGGCAATCATTGTGTACTTTTTATTTGAAAATTAGCTGCGG
TGTGCACTGATTGGTTGATGGAATTAAATCCTGGTGCAAGTTCAGCGGTTAATCATCAGTTGACTTCATAACTGACTTTA
GTGGTTGCAAGTTGGGTTAACTCACCTTGCCATGTACTTTTTCAGGTTTATCATTACAAATACTGGAACTGGTCATGCTG
TTCCTGGGTCCAGGTATCTGACTGTATATTACTAATGTTTACACAACTAGATGATTCCACGCATGTTTACTGCAGC-AAA
GCTCGAAGACATA-------------------------------------------------------------------
----------------------------------------------------------TAGCTATGAAGTATTGTTAACG
CACCGCAAACTCACATTGTGTTAAA-ATGACTTCAGTATCTATGGCATGTTATGCCTTCTCCACTTCCTCTTTTCACTTT
TTAATCCAAATACCAATAATCAATGTGTAGGGCCAACTCTAATCGATTCTCCACACCACATGCATGAGATGGCAGGTGAT
GACATGACAGACATGCATTACCTGCTGATGTGGCATTCTTGTATGTTTAGG--AAAAATAGGTAGTGGGTCGGAACTATT
TAGGAATAGAGGATGATTGAAATGCGGAACTGACAAGTCGAAGTAATATATCACTATTTGTCTTAAAAGTTGCACTATGC
GGCCGTGATGCAGTTTTGTTGATATATGCGCAGTCGGAAAC----------TGCCTGATTGTCACTACATGAACTGTGAA
TGAAATTTCTTTAAGTAATGGAACACATTGCATGCATATGGTTCTGCGTAGTCATTCCTCATGTTCTATACAGATATAAA
GAGTATCGTCTTCAGGACTACAGTTCTTGGTTTGTCAAACAGGCATGCCCCAACTCTTTGTTTGGAAAATTTCTTTGATT
AGTGCAGTTAATTCACAATCATCTATGCTGGTATAACTCGATTTGTTTATTTTAAATCTAGCTCAATGACACTGATAAAT
GGACTCATCTGAGAAGTTGCCTTGTGAAGTCGGATGATTGCAATAGCTTGTCAAATAGATATAAGGTCTCTTCTCCTTTT
CTGCTCATCCTATTTTATCTGATGTGATGTTGTTTCTCTGTGTGTGACCATTCCTTTTGTGGCGATTTTAGTAATACTGT
TTGATTTCATGCAGACTCTAAAACAATACAAGCTCGCTGAGCTGACTCCCATTGAGTCTGGCTGTTGCCGCCCACCAGCG
GAGTATGCCCCCTGTTATCTTCCAGTGTATTTTGAACGTGCAGTTGCTTTCAACAGAGTTTAACATGGCTATCGTATTTT
TCTGAACCTTGTCAGGTGTGGATATCCAGCTTTGAATGCTTCCAATTTTGATCTGAGCTACCATCCGGTGAGCACAAATG
TCGACTGCAAACTGTACAAAAATGATCGGTTCCTCAGGTGCTATGACTGTAATTCTTGCAAGTAAGCTGT-CCGTCTCCT
GTCATAACTTCGAAATACGTAACCTTATCAGAAATTTCAGAATGTAAGTGCTTACGTGAAACTTTTCCTTCCAGAGCTGG
TGTTGCGCAATACATGAAGACAGAGTGGCGAGTGGTTGCCATCTTCAATGTGATATTGTTTATCATTTTGGTAAGCTTAA
AATTCCCTGAAACATTCTCTCTCTCTCTCTCAAAAAAAAG----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AAGTTTCCTGAAATTATA
GCGGATATACTCTTTCTTCTCAGCAATAAATTGCTCCATCTTTGTCTGTTATCTTGAC----TTATGTTTGTATGGGTTT
GTTTTCGGCCAGTCATTCGTGTACTTTGTTGGCTGCTGCGCACGTCGACATGCTGGAGGTAGCGATTCTAAAGTTCCTCG
AAGATGACTGTGTACTTTGAAGTGAATCCTCTCTATGATTCACGTGTCACAGCGAGAGTTAGCTTTACCGCCCCTTGTGA
TAACATTGTTCATTCAAGTTCAGCTGATGAAATGGAGTGT-CAAGGCTTCTGTTCTGTGGGTGATTT-CTTTGTGCCAGT
AGCATTTTGGACATCTATGAAAAAGAACGTCCGACAATCTTCTGAAATACAGCCTGATGATCTTGCACAATGTGTGATGC
CAATGTCTGACATGCGAGTAAACTGGAATAACTTACCAACCGAAGCAATTGGTGTGCTTCTCGCGGTCAGGTTTTTGGAG
GGTACATTTCCTTTTGAACACAGTATAATGTAGATGCTCACATACACTCATCTCCATTAACACATGTCCGCACACACTAT
CTCTATGAGCATGTCTGAAATACGGAGCTGAACACAATATCTTGAGATTGACGAAGTCACCCCAAGCTCCTTCGTATTCG
GTTTTTGGAGGGTAAGGACCGCACTTGTCGAGCTGTTAGTCCTAAAAGTTTCGTCAGGGTGTCACTTTAGTCTCAATTAT
TTCAAAATGCACATTTAAGTCCTAATTCTATAATAAGAGGTTCACCTGAGGTCCTTTTTTCAGAAGCGCTCGTTGACCTG
CCCATGTGGCGCGTTGACCCATGCCACATCGACGGACTGGCCACGGCGGTTCCTATTTTGTTTCATGGAAAACCACTTAT
AAACCATCATCCTCACATTCCCGGGTCCTAGATCTATTTCTTCCCCAAATCCCCTCTCTCTCTCTCGCCATGGCTACCAT
AGCCGTCACACCAT-AGGCTTCGGTGAAGGAGTATCTCCCACTGGTCGTCGCAAAGGGGGCATCTTCACAGGCACCCACT
CGGATTGCCCTTCAGATCACCTCTGGTCGCCGCCGCACGGAGGGAATCGTCGCCAGCGCCGCCGCCAATCGCCTCTAGTG
TCGCCAGAGTTGCATGAAAGAGGAGAAGGGGTGCCACTAAGAGGGGAATA
>chr1B_50
-------------------------------------------------TTGAGGTTTGTGTCCTCTTCTTTGTTTTGCG
AGTTGAGA---TTATTTTGTGGGCCCTCCTTGGTGTTGGCTTCTTCGGCATGACGATCTATCTAGTTTGCT-TTGTCAGC
GTTTGCACCTCTACATCAATGAATTCCCTGTCGTTACTTCTTTAAACTCATGTGTTTCAACAAGATGACGACCTAGAGGC
AGCACGACGCACCACTATTGGGTGTGGAAGGAAGCCAATGCTGATTTCTTCAAGAACTTGCCTGCAATTTTTCATTCCTA
TAAGGACTAATTTTATCTAATATATGGCCTTCGGTTCTTTTGAAAGAAAAAAACAACCACTGCAATTTAAATCCGAACTC
GTTCTACACCTTGAGAATAGAAAACAAACTCAGTTTTATTTTAAAC-TAACACATATCATGATTGCGCGTATGCATGTGC
AAGTTAGA--------ATATTTTTTTCCTTAT---TTTCACCATAAATTTCGGAGTCGTTCCCAGTTTTGTTTTTTCTTT
CGATGAA------GCGCATCCAATGTTTTCTCAGTTGTACCCCACTGCCCGG-ACCCCGACGGAGCTCGCGAAAACGGGG
CCAAACTGCAAAAGGTACCGCGGCTTGCCATTCAAACCCACCAAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTCTGACCAGTCGGCCC
CACACCTGCCCGTGCCAAGCTTAACTGCGACCGCTGTCTTCAAGCCCACACAAATCAACAGCACA------CACTCCCAC
TCCCACTCCCACGCTGACACCTACCTAGGTGCCGCGCCGCCAGGACCCCAGCCTCG-CGTCTCCGGCGGCGTACTCCCAG
ATCTCGACTCCCCAGTCTGTCTCTGCTCCGCGCGGAATCGTCTGACGGAGGCGGGTGGCCAGCGTCGTCCGCAGCTGATT
CGGGATGGCCGGCAGCAGCACCAGCACCTTCGTCATCAGGTGGATCAACTTCCTCACCATGGTCAGTCAGCTTCCCTTCC
-CTCCTCGCTCCCCTTTTCCCAGTTGCTTCCCGATGGCCCACCCGCTTCGAAACTTTTCACTGAAGAGCACTATTAGATA
CTACTAGATGGACACGCCACTTC-----TTGATTTGTTCCCGTTTCATTTGGTGTCTTTGCTCAGCAGCGTGTCTCTGTT
GAGCTCTAGCTGTACTGCATCGTTATCCAGTTATCCCAGCACGTTTATGGG-----------------------------
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-------------------------------------------------TTCTTCACCGTTCTTAACATCTTTCTTTGGG
AACTCTTTATTTACAGTATAATAATTTAATGTTAAGGCATGCAGGTAGGGATCCACGCATCATGATGCTCCTCATGCTCT
TTGTTGAACAGATACTGGCGATACTTGTGGTGGGTTTTGGGTTTTGGATGAGCACCCACAATGACGAGTGCCGGCGGTCA
CTCACAATCCCTGTCATGGGTCTTGGAGGAGTCATTTTTCTCATGTATGTATGCGTCCATGGAATTGTATCATATTATTC
CCACCACGTTAGTCGTTAGTAGTCATGCTCCGAATTGACATGGTTCAGTGTCGATGCCGCAGGTCGCTGGCGGGATTTGT
GGGTGCTTGGAAGAACATTTCTTGCTTGCTTTGGACAGTATCCTTTTTGTGGCATCGGATGCATAAACTATTAAACTTAC
GGCGGCATGAGTGCTGGTTGGTGCTGCTGATGTTGTCTGCTATCTTGATACCCTTGGGGTTATTTGTCGCCTTGACATGT
GGGTATCTAGTATCTAATAATGCTGTTCGTGGTCCTGGTGGCAATCATGGTCTTCACAGTGCTTGCGTAAGTTCCTGTGA
TTCATTTGGGATAGCACCTAGCACAACCTTTCCAGTTGGTGGCAATCATTGTGTACTTTTTATTTGAAAATTAGCTGCGG
TGTGCACTGATTGCTTGATGGAATTAAATCCTAGTGAAAGTTCAGTGGTTAATCATCAATTGACTTCATAACTGACTTTA
GTGGTTGCAAGTTGTGTTAACACACCTCGCCATGTACCTTTTCAGGTTTATCATTACAAATACTGGAACTGGTCATGCTG
TTCCTGGGTCCAGGTATCTGAATTTATATTACTAATGTTTATATAACTAGATGATTCCCCGGGCGTTTACTGCGGGAAAA
GCTCAAAGACATA-------------------------------------------------------------------
----------------------------------------------------------TAGCTATGAATTATTGCTAACA
CACCACAAACACAAACTGTGTTAAAAATGAGCTCAGTATCTATGGCATGTCATGCCTTCTCCACTTCCTCTTTTCACTTT
TTAATCCAAATACCAATAATCAATCTGTAGGGCCATCTCTAATCGATTCTCCACACGACATGCATGAGATGGCAGGTGAT
GACATGACAGACATGCATTACCTGCTGATGTGGCATCCTTGCATGTTTAGG--AAAAATAGGTAGTGGGTCACAACTATT
TAGGAATAGAGGATGATTGAAATGCGGAACTGACAAGTCGAAGTAATATATCACTATTTGTCTTAACAGTTGCACTATGT
GGCTGTGATGCAGTTTTGTTGATATATGCGCAGTCGGAAAC----------TGCCTGATTGTCACTACATGAACTGTGAA
TGAAATTTCTTTAAGTAATGGAACACATTGCATGCATATGGTTCTGTGTTGTCATTTCTCATGTTCTATACAGATATAAA
GAGTATCGTCTTCAGGACTACAGTTCTTGGTTCGTCAAACAGGCATGCCCCAACTCTTTGCTTGGAAGGTTTCTTTCATT
AGTGCAGTTAATTCACAATCATCTATGCTGGTATAACTTGATTTGTTTATTTTAAATCAAGCTCAATGACACTGATAAAT
GGACTCATCTGAGAAGTTGCCTTGTGAAGTCGGATGATTGCAATAGCTTGTCAAAAAGATATAAGGTCTCTTCTCCTTTT
CTGCTCATCCTATTTTATCT-----------------------------------TTTGTGGCAATTTTAGTAATACTGT
TTGATTTCATGCAGACTCTAAAACAATACAAGCTCGCTGAGCTGACTCCCATTGAGTCTGGCTGTTGCCGCCCACCAGCG
GAGTATGTCCCCTGTTATCTTCCAGTGTATTTTGAACGTGCAGTTGCTTTCATCAGAGTTTAACATGGCTATCATATTTT
TCTGAACCTTGTCAGGTGTGGATATCCAGCTTTGAATGCTTCCAATTTTGATCTGGGCTACCATCCGGTGAGCACAAACG
TCGACTGCAAACTGTACAAAAATGATCGGTTCCTCAGGTGCTATGACTGTAATTCTTGCAAGTAAGCTGT-CCGTCTCCT
GTCACACCTTCGAAATACATAACCTTATCAGAAATTTCAGAATGTTAGTGCTTACGTGAAACTTTTCCTTCCAGAGCTGG
TGTTGCGCAATACATGAAGACAGAGTGGCGAGTGGTTGCCATCTTCAATGTGATATTGTTTATCATTTTGGTAAGCTTAA
AATTCCCTTAAACACACACTCTCTCTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTTTCCTGAAATTATA
GCGGATATACTCTTTCT---CAGCAATAAATTGCTCCATCTTTGTCTGGTATCTTGAC----TTATGTTTGTATGGGTTT
GTTTTCGGCCAGTCATTCGTGTACTTTGTTGGCTGCTGCGCACGTCGACATGCTGGAGGTAGTGATTCTAAAGTTCCTCG
AAGATGACTCT-TACTTTGAAGTGAATCCTCTCTATGATTCACGTGTCACAGCGAGAGTTAGCTTTACCGTCCCTTGTAA
-AACATTGTTCATTCAAGTTCAGCTGATGAAATGGAGTGT-CAAGGCTTCTGTTCTGTGGGCGATTT-CTTTGTGCCAGT
AGCATTTTGGACATCTATGAAAATGAACGTCCCACAATCTTCTGAAATACAGCCTGATGATCTTGCACAATGTGTGATGC
CAATATCTGACATGTGAGTAAACTGGAATAACTTACCAACCGAAGCAATTGGTGTGCTTCTCGCGGTCAGGTTTTTGGAG
GGTACATTTCCTTTTGAACACAGTATAATGTAGATGCTCATATACACTCATCTCTATGAACACACGTCCGCACACACTAT
CTCTATGAGCATGTCTGAGATACGGAGCTGAACTCAATATCTTAAGGTTGACGAAGTCACCATAGGCTCTTTCGTATTCG
GTTTTTGGAGGGTAAGGACCGTAGTTGTTGAGCTGTTAGTCCTAAAAGTTTCACCGGGGTGTCACTTTAGTCCCAATTCT
TTCAAAATGCACATTTAGGTCCTAATTCTATAATAAGAGGTTCACCGAGGT--CTTTTTTCACAAGCGCTCGTTGACCTG
CCCACGTGGCGCGTTGACCCATGCCACGTCGACAGACTGG-CACGGCGGTTCCTATTTCGTTTCACCGAAAACCACTTAT
AAACCATCATCCTCACATTCCCCAGTCCTAGATCTATTTCTTCCCCAAATTCCCC--CTCTCTCTCGCCCTGGCTACCAT
AGCAGTCACACCATTAGGCCTCGGTGAAGGAGGATCTCCCACTGGCCGTCACAAAGGGGGCATCTTCACGGGCACCCACT
CGGATTGCCCTTTAGACCACCTCTGGTCGCCGCCGCACAGAGGGAATCGTCGCCACCGCCGCCGCCAATCGCCTCTAGTG
TCGCCAGAGTTGCGTGAAAGAGGAGAGGGGGTGCCACTGAGAGGGGAATA
>chr1A_50
-------------------------------------------------TTGAGGTTTGTGTCCCCTTCTTTGTCTTGCC
AGAGTTGAGA--TTTTTTGTGGGCCCTCCTCGGTGTTAGCTTCTCCTGCATGATGGTCTATCTAGTTTGCCGTTGTTAGC
GTTTGCACTTCTACATCAATGACTTCTCAGTCGTTACTTCTATAAACTAATGTGTTACATTCCTGGCG------------
--------------------------------------------------------------------------------
-----------------------------TTCGGTTTTTTTGAAAAAAAACAACAAGCATTGCAATTTAAATCCGAACTC
ATTCTACACCCTGAGAATAGAAAACAAACTCAGATGTAAACT-------ACACATATCACGATTGCACGCATGCATGTTT
AAGTTAGGATATTCCCATATTCTTTTCCTGAT---TTTTACCATAAATTTGGGAGCTGTTCCCAGTTTTGGTTC-TCTTT
CGATGAA------GAGCATCCAATGTTG----AGTTGTACCCCACCGCCCCAAACCCCGACGGAGCTCGCGAAAATAGGA
CCAAACTGCAAAAAGTGCCGCGGCTGCTATTCAAACCCGACCGAAAAGACCCCTTCTCCCCCTCATCGGCCTCACCACCG
AACGCGAAGCAAACCGGCGTCGAGTCCGCCCTCGCCGGCCCACTGTTGATAACCAATCTGT-------------------
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-------------------------------------------------------------CCCTCTGACCAGTCGGCCC
CACACCTGCCCGTGCCAAGCTTAACTGCGACCGCTGTCTTCAAGCCCACACAAATCAACAACACACACTCCCACTCCCAC
TCCCACTCCCACGCTGACACCTACCTAGGTGCCGCGCCGCCGGGACCCCAGCCTCGCCGTCTCCGGCGGCGTGCTCCCAG
ATCTCGACTCGACGGTCCGTCTCTGCTCCGCGCGGAATCGACTGACGGGGGCGGGAGGCCAGCGTCGTCCGCAGCTGATT
CGGGATGGGCGGCAGCAGCACCAGCACCTTCGTCATCAGGTGGATCAACTTCCTCACCATGGTCAGTCAGCTTCCCTTCC
TCTCCTCGCCCCCCTTTTCCTAGCTGCTTCCCGATGGCCGACCCGTCTTGAAG-TTTTCAGTGAAGAGCACTATTAGATA
CTACTAGATGGATTCGCCAGTTCTTGATTTGATTTGTTCCCGTTCCATCTGGTCTCTTTGCTCAGCGGTGCCCCTCTGTT
GAGCTTGAGCTGTGCCGCATCGTTATCCAGTTATTGCTGAAATCTGAGATGGGCTCTAGGCCCATATTGCAATTTCTGAA
AAATCTCTAAGGGCCCATGTGGGTTATATGGCACTAGGTGTGGTGGGAAGTTTAGTCCCACCCCGGAAGTGGAAGGAGAG
TTGGAGTG---------------------------------------------GTTTATAAGGGTTTCTCTTCTACATGC
TATTGGAGCTTGAGAAGAGAAGAGGCCCTCGCGCACTCCTCCGCCGCCCGCCTCGCCGCGGCGCGGCGCGGCGCGGGTTG
CGGGATTGAGCCGAGCCGAGCTCACACCTACGCGCTTATTTTTGCCAGTCACTAACGGAGAGTTTTCTGACAGCTGGGCC
ACGATCTGAGACGTCGGATCGTGGGCTGTCACGGACTTGGACGTGGGCTCTCCACGCGGCTGCGCCTATAAGTATGCGGT
GTTTCCTAACCCTAGCCGTCACGAACAGATCACATCTGCTCACGCGCACGCCCACCGTCGTTCCTTTGCTGCTGCTGCCG
CCGGTGACTCCATCCCGTCCGCCACGTACACGGTCGACGGGAGAGCAGGTCTCCGAAACCACGCCCTTCTGGTTCCTGTA
CGGGGTGAGGGGCGAATAGGTTTTTGGGCAGCGATTACGCGACTGCTCGCTTCCGATCGTCTACTTCCTCTACGTCCGCG
TCGCCTTCGTCATCACCATGTCCACCGACGCCGACCGTGCCGCCGCCGAGAAAGCTGAAGCCGACAAGAAGGTCGCCGAG
GACGCCGCTGCTGCCACCAAAGCCGCGGCCTCTGCGTGGCCTACTGGAGGGTATAACTCGTTTATCCCGCTCCTGATTAT
TTTCATATTAGCAGTACTAGCAGTATGTGTAGATTTGTCTACTGTTTGCTTAGTACGTGCATGTTTAGATCAGAGTCAGT
ACGTCATCAACTTAGTCAATGCCATGCTAGTGATTTACTCATGGATTAATTTAATCGAGAAATTGCCTATTTTCTCAAC-
--------------------------------------------------------------------------------
----------------------AGTTATCCCAGTGCATGTATTTATCGCTTCTTCACCATTCTTGGCATCTTTCGTTTGG
AACTCTTTGTTTAC--------AATTTAATGCCAAGGCATGCAGCTAGGGATCCGCACATCATGATGCTCCTCATGCTCT
TTGTTGAACAGATACTGGCGATACTTGTGGTGGGTTTTGGGTTCTGGATGAGCACCCACAATGACGAGTGCCGACGGTCA
CTGACGATCCCTGTCATGGGTCTTGGAGGAGTCATTTTTCTCATGT----ATGCGTCCATGGAATTTTATC-TATTATTC
CCACCACGTT-------AGTACTCATGCTCCGAATTGACATGGTTCAGTGCCGATGCTGCAGGTCGCTGGCGGGATTCGT
GGGTGCTTGGAAGAACATTTCCTGCTTGCTTTGGACAGTATCCTTTTTGTGGCATCTGATGCATAAACTATTAAACTTAC
GGCGGCATGAGTGCTGGTTGGTGCTGCTGATGTTGTCTGCTCTCTTGATATCCTTGGGGTTATTTGTCGCCTTGACATGT
GGGTATCTAGTATCTAATAATGCTGTTCGTGGTCCTGGTGGCAATCATGGTCTTCACAGTGCTTGCGTAAGTTCCTGTGA
TTCATTTGGGATAGCAC-TAGCACAACCTTTCCAGTTGGTGGCAATCATTGTGTACTTTTTATTTGAAAATTAGCTGCGG
TGTGCACTGATTGGTTGATGGAATTAAATCCTGGTGCAAGTTCAGTGGTTAATCATCAATTGACTTCATAACTGACTTTA
GTGGTTGCAAGTTGTGTTAACACACCTTGCCATGTACTTCTTCAGGTTTATCATTACAAATACTGGAACTGGTCATGCTG
TCCCTGGGTCCAGGTATGTGACTATATGTCACTAATGTTTATACAACTAGATGATTCCCCACTCGTTTGCTGCAGGAAAA
GCTCAAAGACATGTACTTCCTCCGTTCCGAATTACTTGTCTTGGATTTGTCTAGATACGGATGTATCTAGACTCATTTTA
GTGCTAGATACCTCCGTATCTAGACAAATCTAAGACAAGTAATTCGGAACGGAGGGAGTAGCTATGAAATATTGTTACTG
CACCGCAAACATAAATTGTGTTAAAGATGAGTTCAGTATCTATTGCATGTCACGCCTTATCCACTTCCTCTTTTCACTTT
TTAATCCAAATACCAATAATCAATATGTAGGGCCAACTCTAATCGATTCTCCACACCACATGCATGAGATGGCAGGTCAT
GACATGACAAACATGCATTACCCGCTGATGTGGCATCCTTGCATGCTTAGGAAAAAAATAGGTAGTGGGTGAAAACTATT
TAGGAATAGAGGACGATTGAAATGCCGATTTGATAAGTCGAAGTAATATATCACTATTTGTCCTAAAAGTTGCACTATGT
GGCTGCGATGCAGTTTTGTTGATATATGCACAGTCGGAAACGGTTTGGTACTGCCTGATCGTCATTACATGAACTGTGAA
TGAAATTTCTTTCTGTAATGGAACACATTGCATGCATATGGTTCTGTGGTGTCATTTCTCATGTTCTATACAGCTATAAA
GAGTATCGTCTTCAGGACTACAGTTCTTGGTTCGTCAAACAGGCATGCCCCAACTCTTTGTTTGGAAAGTTTCTTTCATT
AGTGCAGATAATTCACAA-----TATGCTGGTATAACTCGATTTGTTTATTTTAAATCAAGCTCAATGACACTGATAAAT
GGACTCATCTGAGAAGTTGCCTTGTGAAGTCGGATGATTGCAATAGCTTGTCAAAAAGATATAAGGTCTATTCTCCTTTT
CTGCGCATCCTATTTTATCTGATGCGATGTCCTTTCTCCGTGTGTGACCATTCCTTTTGTGGCGATCTTAGTAATACCGT
TTGATTTCATGCAGACTCTAAAACAATACAAGCTCGCTGATTTGACTCCCATTGAGTCTGGCTGTTGCCGCCCACCAGCG
GAGTATGTCCCCTGTTATCTTCCAGTGTATTTTGAACGTGCAGTTGCTCTCATCAGAGTTTAACATGGTTATCGTATTTT
TCTGAACATTGTCAGGTGTGGATATCCAGCTTTGAATGCTTCCAATTTTGATCTGAGCTACCATCCGGTGAGCACAAACG
TCGACTGCAAACTGTACAAAAATGATCGGTCCCTCAGGTGCTATGACTGTAATTCTTGCAAGTAAGCTATCCCATCTCCT
ATCCCACCTTCAAAATACGTAACCTTACT---------AGAATGTTCGTGCTTATGTGAAACTTTTGCTTCCAGAGCTGG
GGTTGCACAATACATGAAGACAGAGTGGCGGGTGGTTGCCATCTTCAATGTGATATTGTTTGTCATTTTGGTAAGCTTAA
AGTTCCCTG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------AAATATA
GCTCATATACTCGTTGT---CAGCAATAAATTGATCCATCTCTATCTGCTATCTTGACTTTCTTATATTTGTATGGGTTT
GTTTTCGGCCAGTCATTCGTGTACTTTGTTGGCTGCTGCGCACGTCGACATGCTGGAGGTAGCGATTCTAAAGTTCCTGG
AAGATGACG----------------------------------GTGTCACAGCAGGCGTTAGCTTTGCCGTCCCTTGTAA
TAAGATTG----TTCCAGTAAAGTTGATGAAATGGAATGCCCAAGGCTTCTGTACTGTGGGTGACTTTCTTTGTTCCAGT
TGTATTGTGAACATCTGTGAAAAAGAACGTCCGACAATCTTCTGAAATACAGCCCGATGATCTTGCACAATG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
----------S-----S---------------------------S---S----------------------------S--
-----------------------S-------S------------------S--------------S--S-S---------
-----SSS---S------------S---------------------------------------S--------------S
--------------------------------S--------S-SS-------------S-------------S---S---
--------------------------------S-----SS-S--SSS--------------------S------------
--------------------------------SSS-----------------------------------S---------
S------SSSSSS---------------------------------S------------S--------------------
----------------------------------------------------S-------------------S-S-----
S----------------------S---------S----S-------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
-------------------------S------------------------------------------------------
-----------------------S-------------------------------------------------------S
--------------------------------------------------------------------------------
----------------------------S----------------------S--------------------S-------
--------------------------------------------------------------------------------
---------------------------------S-SSSS-SS-SSSS-S-S-SSS-S-S-SSSSS-SS-S-SSS-SSS-S
SSS-SSSS--SSSSSS-S-SSSSSSS-S-S-SSS-SSSS-SSS-SSSS-SSSSSSSSSSSSSSSSSSSS-SS-SSS-S-S
-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S-S----S--S--S-----S-SS--S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------S-S-----S-S-S-----S-SS---SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS--S------------SSS----S-----------------------------------
------------S------------------------------------------------------------S------
-------S-----------------------------------------------------------S------------
--------------------S-----------S---------------------S-------------------------
---------------------S-------------------------S-----------------------S--------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S------------S---------------------
--------------S------S----------------------------------------------------------
-----------------------S-----------------S----------------S---SS-----------S----
----S---------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
----------S--S----------------S-------------------S-----------------------------
------------------------S-------------------------------------------------------
------------------------------------S----S-----------------------------SS-------
-------------------------------------------------------------------------------S
---S----------------------------------------------------------------------------
----------------------------------------------S--S------S-----------------------
--------------------------------S-----------------------------------S-------S---
----------------------------------------------------------S---------------------
-------------------------------------------------------S------------------------
------------------------S-----SS------S-----------------------------------------
--------------------------------------------------------------------------------
-------S--------------------------------------------S---------------------------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
----S-S--------------------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------SS-S------------SSSSSSSSSS----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------SSS----------------------------S-------------------------------
--------------------------------------------------------------------------------
---------S-S----------------------------------------------------------S-------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S---------S-----------------------------------------------------------------
----------------------------------------S-------------S--S------S---------------
------------------S--------------S---------S--S--------------SS-S----S----------
---------------------S-S----S-----------------------SS-S----------------S-----S-
-----------------S----------------------------SSS-SSS---------S-----------------
----S----------------------S-----S------S-----------------S------SS-------------
----------------------SS--------------------------S---SSS------------S----------
---S---------------S------------S------------S----S------------------S----------
------------S---S---------------------S----------------S------------------------
-------------S------------S-----------S-----------
>forward_125
--------------------------------------------------------------------------------
-------------------------CTCCTCGGTGTTGGCTTCTA-----------------------------------
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>reverse_2561
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ATGCCACAACTTACCTCGCA------------------------------------------------------------
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>forward_1716
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----------------TTTTGATGAGGCGAGGGAGG--------------------------------------------
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>reverse_3579
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----------------------------------------------------------ACGCATGTTTACTGCAGCAA--
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>forward_2580
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ATGCCACAACTTACCTCGCA------------------------------------------------------------
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>reverse_3584
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---------------------------------------------------------------TGTTTACTGCAGCAAAG
CTCG----------------------------------------------------------------------------
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>forward_2913
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-------------TCATGGGCCTTGGAGGAGTA-----------------------------------------------
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>reverse_4080
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-------------------------------------------------------------------------------C
GGCCGTGATGCAGTTTTG--------------------------------------------------------------
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>forward_3774
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--------------------------------------------------------------------------TTAACG
CACCGCAAACTCAC------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_5902
--------------------------------------------------------------------------------
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-------------------------------------------------------------CCAAGCTCCTTCGTATTCG
GT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
