Multiple sequence alignment - TraesCS1D01G162300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G162300 chr1D 100.000 2804 0 0 1 2804 230676583 230673780 0.000000e+00 5179.0
1 TraesCS1D01G162300 chr1B 93.959 2218 65 25 612 2802 365689082 365691257 0.000000e+00 3290.0
2 TraesCS1D01G162300 chr1B 96.364 110 3 1 507 616 365675831 365675939 2.220000e-41 180.0
3 TraesCS1D01G162300 chr1B 100.000 28 0 0 465 492 365675770 365675797 5.000000e-03 52.8
4 TraesCS1D01G162300 chr1A 94.322 1673 67 20 461 2116 319077382 319079043 0.000000e+00 2538.0
5 TraesCS1D01G162300 chr1A 85.874 446 43 16 2293 2728 319079145 319079580 9.150000e-125 457.0
6 TraesCS1D01G162300 chr1A 97.059 34 1 0 2251 2284 319079141 319079174 1.080000e-04 58.4
7 TraesCS1D01G162300 chr3B 85.360 403 54 3 1 402 341231420 341231818 2.010000e-111 412.0
8 TraesCS1D01G162300 chr5B 85.360 403 50 6 1 396 21363933 21364333 2.600000e-110 409.0
9 TraesCS1D01G162300 chr5B 85.139 397 52 5 1 394 520174984 520174592 1.560000e-107 399.0
10 TraesCS1D01G162300 chr3A 84.262 413 52 9 1 402 340290293 340290703 9.420000e-105 390.0
11 TraesCS1D01G162300 chr7D 87.574 338 39 3 1 336 535739076 535739412 3.390000e-104 388.0
12 TraesCS1D01G162300 chr7D 100.000 42 0 0 1 42 438070536 438070495 8.330000e-11 78.7
13 TraesCS1D01G162300 chr2D 86.040 351 47 2 24 374 478984974 478985322 2.640000e-100 375.0
14 TraesCS1D01G162300 chr7B 78.170 623 108 20 1097 1714 56924264 56924863 3.410000e-99 372.0
15 TraesCS1D01G162300 chr5D 85.596 361 43 5 24 383 357498809 357499161 1.230000e-98 370.0
16 TraesCS1D01G162300 chr5D 82.297 418 63 5 24 438 66580530 66580939 4.440000e-93 351.0
17 TraesCS1D01G162300 chr5A 82.212 416 60 13 24 436 57663690 57663286 2.070000e-91 346.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G162300 chr1D 230673780 230676583 2803 True 5179.0 5179 100.000000 1 2804 1 chr1D.!!$R1 2803
1 TraesCS1D01G162300 chr1B 365689082 365691257 2175 False 3290.0 3290 93.959000 612 2802 1 chr1B.!!$F1 2190
2 TraesCS1D01G162300 chr1A 319077382 319079580 2198 False 1017.8 2538 92.418333 461 2728 3 chr1A.!!$F1 2267
3 TraesCS1D01G162300 chr7B 56924264 56924863 599 False 372.0 372 78.170000 1097 1714 1 chr7B.!!$F1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.031314 GATCGAGCCTTCGCAGATCA 59.969 55.0 12.56 0.0 46.28 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2092 2137 0.106819 ACATCAGCCAGCCAAGGATC 60.107 55.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.978878 AGAGCGCAATTTAATAGATGTTCG 58.021 37.500 11.47 0.00 0.00 3.95
24 25 5.523916 AGAGCGCAATTTAATAGATGTTCGT 59.476 36.000 11.47 0.00 0.00 3.85
25 26 5.501715 AGCGCAATTTAATAGATGTTCGTG 58.498 37.500 11.47 0.00 0.00 4.35
26 27 4.144731 GCGCAATTTAATAGATGTTCGTGC 59.855 41.667 0.30 0.00 0.00 5.34
27 28 5.262422 CGCAATTTAATAGATGTTCGTGCA 58.738 37.500 0.00 0.00 0.00 4.57
28 29 5.169561 CGCAATTTAATAGATGTTCGTGCAC 59.830 40.000 6.82 6.82 0.00 4.57
29 30 6.258160 GCAATTTAATAGATGTTCGTGCACT 58.742 36.000 16.19 0.00 0.00 4.40
30 31 6.747280 GCAATTTAATAGATGTTCGTGCACTT 59.253 34.615 16.19 1.20 0.00 3.16
31 32 7.253420 GCAATTTAATAGATGTTCGTGCACTTG 60.253 37.037 16.19 7.54 0.00 3.16
32 33 6.795098 TTTAATAGATGTTCGTGCACTTGT 57.205 33.333 16.19 0.00 0.00 3.16
33 34 6.795098 TTAATAGATGTTCGTGCACTTGTT 57.205 33.333 16.19 0.00 0.00 2.83
34 35 4.668576 ATAGATGTTCGTGCACTTGTTG 57.331 40.909 16.19 0.00 0.00 3.33
50 51 7.763172 CACTTGTTGCTAGAATAGAGGTTAG 57.237 40.000 0.00 0.00 42.77 2.34
51 52 7.548097 CACTTGTTGCTAGAATAGAGGTTAGA 58.452 38.462 0.00 0.00 42.77 2.10
52 53 7.704472 CACTTGTTGCTAGAATAGAGGTTAGAG 59.296 40.741 0.00 0.00 42.77 2.43
53 54 7.616150 ACTTGTTGCTAGAATAGAGGTTAGAGA 59.384 37.037 0.00 0.00 42.77 3.10
54 55 8.540507 TTGTTGCTAGAATAGAGGTTAGAGAT 57.459 34.615 0.00 0.00 42.77 2.75
55 56 7.946207 TGTTGCTAGAATAGAGGTTAGAGATG 58.054 38.462 0.00 0.00 42.77 2.90
56 57 7.780271 TGTTGCTAGAATAGAGGTTAGAGATGA 59.220 37.037 0.00 0.00 42.77 2.92
57 58 7.994425 TGCTAGAATAGAGGTTAGAGATGAG 57.006 40.000 0.00 0.00 42.77 2.90
58 59 7.750655 TGCTAGAATAGAGGTTAGAGATGAGA 58.249 38.462 0.00 0.00 42.77 3.27
59 60 7.663905 TGCTAGAATAGAGGTTAGAGATGAGAC 59.336 40.741 0.00 0.00 42.77 3.36
60 61 7.883311 GCTAGAATAGAGGTTAGAGATGAGACT 59.117 40.741 0.00 0.00 42.77 3.24
63 64 9.166222 AGAATAGAGGTTAGAGATGAGACTAGA 57.834 37.037 0.00 0.00 0.00 2.43
64 65 9.959721 GAATAGAGGTTAGAGATGAGACTAGAT 57.040 37.037 0.00 0.00 0.00 1.98
65 66 9.739276 AATAGAGGTTAGAGATGAGACTAGATG 57.261 37.037 0.00 0.00 0.00 2.90
66 67 6.003950 AGAGGTTAGAGATGAGACTAGATGC 58.996 44.000 0.00 0.00 0.00 3.91
67 68 4.759693 AGGTTAGAGATGAGACTAGATGCG 59.240 45.833 0.00 0.00 0.00 4.73
68 69 4.083003 GGTTAGAGATGAGACTAGATGCGG 60.083 50.000 0.00 0.00 0.00 5.69
69 70 3.500448 AGAGATGAGACTAGATGCGGA 57.500 47.619 0.00 0.00 0.00 5.54
70 71 3.411446 AGAGATGAGACTAGATGCGGAG 58.589 50.000 0.00 0.00 0.00 4.63
71 72 3.072330 AGAGATGAGACTAGATGCGGAGA 59.928 47.826 0.00 0.00 0.00 3.71
72 73 3.818210 GAGATGAGACTAGATGCGGAGAA 59.182 47.826 0.00 0.00 0.00 2.87
73 74 4.211125 AGATGAGACTAGATGCGGAGAAA 58.789 43.478 0.00 0.00 0.00 2.52
74 75 3.784701 TGAGACTAGATGCGGAGAAAC 57.215 47.619 0.00 0.00 0.00 2.78
75 76 3.089284 TGAGACTAGATGCGGAGAAACA 58.911 45.455 0.00 0.00 0.00 2.83
76 77 3.509967 TGAGACTAGATGCGGAGAAACAA 59.490 43.478 0.00 0.00 0.00 2.83
77 78 3.851098 AGACTAGATGCGGAGAAACAAC 58.149 45.455 0.00 0.00 0.00 3.32
78 79 2.599082 GACTAGATGCGGAGAAACAACG 59.401 50.000 0.00 0.00 0.00 4.10
79 80 2.029290 ACTAGATGCGGAGAAACAACGT 60.029 45.455 0.00 0.00 0.00 3.99
80 81 1.429463 AGATGCGGAGAAACAACGTC 58.571 50.000 0.00 0.00 0.00 4.34
81 82 1.000955 AGATGCGGAGAAACAACGTCT 59.999 47.619 0.00 0.00 0.00 4.18
82 83 2.230508 AGATGCGGAGAAACAACGTCTA 59.769 45.455 0.00 0.00 0.00 2.59
83 84 2.512485 TGCGGAGAAACAACGTCTAA 57.488 45.000 0.00 0.00 0.00 2.10
84 85 3.034721 TGCGGAGAAACAACGTCTAAT 57.965 42.857 0.00 0.00 0.00 1.73
85 86 3.395639 TGCGGAGAAACAACGTCTAATT 58.604 40.909 0.00 0.00 0.00 1.40
86 87 3.430895 TGCGGAGAAACAACGTCTAATTC 59.569 43.478 0.00 0.00 0.00 2.17
87 88 3.678548 GCGGAGAAACAACGTCTAATTCT 59.321 43.478 5.79 5.79 33.28 2.40
88 89 4.151867 GCGGAGAAACAACGTCTAATTCTT 59.848 41.667 0.00 0.00 30.89 2.52
89 90 5.333875 GCGGAGAAACAACGTCTAATTCTTT 60.334 40.000 0.00 0.00 30.89 2.52
90 91 6.128742 GCGGAGAAACAACGTCTAATTCTTTA 60.129 38.462 0.00 0.00 30.89 1.85
91 92 7.445836 CGGAGAAACAACGTCTAATTCTTTAG 58.554 38.462 0.00 0.00 36.87 1.85
92 93 7.327761 CGGAGAAACAACGTCTAATTCTTTAGA 59.672 37.037 0.00 0.00 41.18 2.10
121 122 2.601481 AAAAGAAGCACGCAAGATCG 57.399 45.000 0.00 0.00 43.62 3.69
122 123 1.795768 AAAGAAGCACGCAAGATCGA 58.204 45.000 0.00 0.00 43.62 3.59
123 124 1.354040 AAGAAGCACGCAAGATCGAG 58.646 50.000 0.00 0.00 43.62 4.04
124 125 1.080995 AGAAGCACGCAAGATCGAGC 61.081 55.000 0.00 0.00 44.31 5.03
125 126 2.029904 GAAGCACGCAAGATCGAGCC 62.030 60.000 0.00 0.00 44.89 4.70
126 127 2.510238 GCACGCAAGATCGAGCCT 60.510 61.111 0.00 0.00 39.51 4.58
127 128 2.103042 GCACGCAAGATCGAGCCTT 61.103 57.895 0.00 0.00 39.51 4.35
128 129 2.002127 CACGCAAGATCGAGCCTTC 58.998 57.895 0.00 0.00 43.62 3.46
129 130 1.517257 ACGCAAGATCGAGCCTTCG 60.517 57.895 0.00 8.41 44.80 3.79
130 131 2.864931 CGCAAGATCGAGCCTTCGC 61.865 63.158 0.00 6.01 43.58 4.70
131 132 1.811266 GCAAGATCGAGCCTTCGCA 60.811 57.895 0.00 0.00 46.28 5.10
132 133 1.760268 GCAAGATCGAGCCTTCGCAG 61.760 60.000 0.00 0.00 46.28 5.18
133 134 0.179127 CAAGATCGAGCCTTCGCAGA 60.179 55.000 0.00 0.00 46.28 4.26
134 135 0.749649 AAGATCGAGCCTTCGCAGAT 59.250 50.000 0.00 0.00 46.28 2.90
135 136 0.313672 AGATCGAGCCTTCGCAGATC 59.686 55.000 0.00 10.59 46.28 2.75
136 137 0.031314 GATCGAGCCTTCGCAGATCA 59.969 55.000 12.56 0.00 46.28 2.92
137 138 0.461548 ATCGAGCCTTCGCAGATCAA 59.538 50.000 0.00 0.00 46.28 2.57
138 139 0.461548 TCGAGCCTTCGCAGATCAAT 59.538 50.000 0.00 0.00 46.28 2.57
139 140 1.681264 TCGAGCCTTCGCAGATCAATA 59.319 47.619 0.00 0.00 46.28 1.90
140 141 2.100749 TCGAGCCTTCGCAGATCAATAA 59.899 45.455 0.00 0.00 46.28 1.40
141 142 3.062763 CGAGCCTTCGCAGATCAATAAT 58.937 45.455 0.00 0.00 40.36 1.28
142 143 3.120752 CGAGCCTTCGCAGATCAATAATG 60.121 47.826 0.00 0.00 40.36 1.90
143 144 4.060900 GAGCCTTCGCAGATCAATAATGA 58.939 43.478 0.00 0.00 37.45 2.57
144 145 4.454678 AGCCTTCGCAGATCAATAATGAA 58.545 39.130 0.00 0.00 36.88 2.57
145 146 4.274459 AGCCTTCGCAGATCAATAATGAAC 59.726 41.667 0.00 0.00 36.88 3.18
146 147 4.766007 CCTTCGCAGATCAATAATGAACG 58.234 43.478 0.00 0.00 39.49 3.95
147 148 3.859745 TCGCAGATCAATAATGAACGC 57.140 42.857 0.00 0.00 39.49 4.84
148 149 3.194062 TCGCAGATCAATAATGAACGCA 58.806 40.909 0.00 0.00 39.49 5.24
149 150 3.809279 TCGCAGATCAATAATGAACGCAT 59.191 39.130 0.00 0.00 39.49 4.73
150 151 4.084380 TCGCAGATCAATAATGAACGCATC 60.084 41.667 0.00 0.00 39.49 3.91
151 152 4.146719 GCAGATCAATAATGAACGCATCG 58.853 43.478 0.00 0.00 39.49 3.84
152 153 4.084380 GCAGATCAATAATGAACGCATCGA 60.084 41.667 0.00 0.00 39.49 3.59
153 154 5.606266 CAGATCAATAATGAACGCATCGAG 58.394 41.667 0.00 0.00 39.49 4.04
154 155 5.403466 CAGATCAATAATGAACGCATCGAGA 59.597 40.000 0.00 0.00 39.49 4.04
155 156 5.985530 AGATCAATAATGAACGCATCGAGAA 59.014 36.000 0.00 0.00 39.49 2.87
156 157 5.641777 TCAATAATGAACGCATCGAGAAG 57.358 39.130 0.00 0.00 32.35 2.85
157 158 4.507756 TCAATAATGAACGCATCGAGAAGG 59.492 41.667 0.00 0.00 32.35 3.46
158 159 1.009829 AATGAACGCATCGAGAAGGC 58.990 50.000 0.00 0.00 32.35 4.35
159 160 0.108186 ATGAACGCATCGAGAAGGCA 60.108 50.000 0.00 0.00 0.00 4.75
160 161 1.014044 TGAACGCATCGAGAAGGCAC 61.014 55.000 0.00 0.00 0.00 5.01
161 162 6.703043 TAATGAACGCATCGAGAAGGCACT 62.703 45.833 0.00 0.00 34.14 4.40
162 163 0.530744 AACGCATCGAGAAGGCACTA 59.469 50.000 0.00 0.00 38.49 2.74
163 164 0.530744 ACGCATCGAGAAGGCACTAA 59.469 50.000 0.00 0.00 38.49 2.24
164 165 1.137086 ACGCATCGAGAAGGCACTAAT 59.863 47.619 0.00 0.00 38.49 1.73
165 166 1.789464 CGCATCGAGAAGGCACTAATC 59.211 52.381 0.00 0.00 38.49 1.75
166 167 2.139118 GCATCGAGAAGGCACTAATCC 58.861 52.381 0.00 0.00 38.49 3.01
167 168 2.483714 GCATCGAGAAGGCACTAATCCA 60.484 50.000 0.00 0.00 38.49 3.41
168 169 3.797039 CATCGAGAAGGCACTAATCCAA 58.203 45.455 0.00 0.00 38.49 3.53
169 170 3.247006 TCGAGAAGGCACTAATCCAAC 57.753 47.619 0.00 0.00 38.49 3.77
170 171 2.832129 TCGAGAAGGCACTAATCCAACT 59.168 45.455 0.00 0.00 38.49 3.16
171 172 3.260884 TCGAGAAGGCACTAATCCAACTT 59.739 43.478 0.00 0.00 38.49 2.66
172 173 4.464951 TCGAGAAGGCACTAATCCAACTTA 59.535 41.667 0.00 0.00 38.49 2.24
173 174 4.567159 CGAGAAGGCACTAATCCAACTTAC 59.433 45.833 0.00 0.00 38.49 2.34
174 175 5.488341 GAGAAGGCACTAATCCAACTTACA 58.512 41.667 0.00 0.00 38.49 2.41
175 176 5.491982 AGAAGGCACTAATCCAACTTACAG 58.508 41.667 0.00 0.00 38.49 2.74
176 177 4.222124 AGGCACTAATCCAACTTACAGG 57.778 45.455 0.00 0.00 36.02 4.00
177 178 3.844211 AGGCACTAATCCAACTTACAGGA 59.156 43.478 0.00 0.00 36.02 3.86
178 179 4.080863 AGGCACTAATCCAACTTACAGGAG 60.081 45.833 0.00 0.00 36.02 3.69
179 180 3.623510 GCACTAATCCAACTTACAGGAGC 59.376 47.826 0.00 0.00 37.34 4.70
180 181 4.832248 CACTAATCCAACTTACAGGAGCA 58.168 43.478 0.00 0.00 37.34 4.26
181 182 4.872691 CACTAATCCAACTTACAGGAGCAG 59.127 45.833 0.00 0.00 37.34 4.24
182 183 4.532521 ACTAATCCAACTTACAGGAGCAGT 59.467 41.667 0.00 0.00 37.34 4.40
183 184 4.373156 AATCCAACTTACAGGAGCAGTT 57.627 40.909 0.00 0.00 37.34 3.16
184 185 5.499004 AATCCAACTTACAGGAGCAGTTA 57.501 39.130 0.00 0.00 37.34 2.24
185 186 5.700402 ATCCAACTTACAGGAGCAGTTAT 57.300 39.130 0.00 0.00 37.34 1.89
186 187 4.832248 TCCAACTTACAGGAGCAGTTATG 58.168 43.478 0.00 0.00 0.00 1.90
187 188 4.530553 TCCAACTTACAGGAGCAGTTATGA 59.469 41.667 0.00 0.00 0.00 2.15
188 189 5.012664 TCCAACTTACAGGAGCAGTTATGAA 59.987 40.000 0.00 0.00 0.00 2.57
189 190 5.705441 CCAACTTACAGGAGCAGTTATGAAA 59.295 40.000 0.00 0.00 0.00 2.69
190 191 6.128172 CCAACTTACAGGAGCAGTTATGAAAG 60.128 42.308 0.00 0.00 0.00 2.62
191 192 6.115448 ACTTACAGGAGCAGTTATGAAAGT 57.885 37.500 0.00 0.00 0.00 2.66
192 193 6.534634 ACTTACAGGAGCAGTTATGAAAGTT 58.465 36.000 0.00 0.00 0.00 2.66
193 194 6.428159 ACTTACAGGAGCAGTTATGAAAGTTG 59.572 38.462 0.00 0.00 0.00 3.16
194 195 4.074970 ACAGGAGCAGTTATGAAAGTTGG 58.925 43.478 0.00 0.00 0.00 3.77
195 196 4.202461 ACAGGAGCAGTTATGAAAGTTGGA 60.202 41.667 0.00 0.00 0.00 3.53
196 197 4.946157 CAGGAGCAGTTATGAAAGTTGGAT 59.054 41.667 0.00 0.00 0.00 3.41
197 198 6.115446 CAGGAGCAGTTATGAAAGTTGGATA 58.885 40.000 0.00 0.00 0.00 2.59
198 199 6.769822 CAGGAGCAGTTATGAAAGTTGGATAT 59.230 38.462 0.00 0.00 0.00 1.63
199 200 7.284034 CAGGAGCAGTTATGAAAGTTGGATATT 59.716 37.037 0.00 0.00 0.00 1.28
200 201 7.836183 AGGAGCAGTTATGAAAGTTGGATATTT 59.164 33.333 0.00 0.00 0.00 1.40
201 202 8.470002 GGAGCAGTTATGAAAGTTGGATATTTT 58.530 33.333 0.00 0.00 0.00 1.82
202 203 9.508567 GAGCAGTTATGAAAGTTGGATATTTTC 57.491 33.333 0.00 0.00 0.00 2.29
203 204 9.247861 AGCAGTTATGAAAGTTGGATATTTTCT 57.752 29.630 0.00 0.00 33.21 2.52
232 233 9.927081 AATATCTTCATGTGGTTCTTATTTCCT 57.073 29.630 0.00 0.00 0.00 3.36
233 234 9.927081 ATATCTTCATGTGGTTCTTATTTCCTT 57.073 29.630 0.00 0.00 0.00 3.36
234 235 8.655935 ATCTTCATGTGGTTCTTATTTCCTTT 57.344 30.769 0.00 0.00 0.00 3.11
235 236 7.885297 TCTTCATGTGGTTCTTATTTCCTTTG 58.115 34.615 0.00 0.00 0.00 2.77
236 237 6.588719 TCATGTGGTTCTTATTTCCTTTGG 57.411 37.500 0.00 0.00 0.00 3.28
237 238 6.074648 TCATGTGGTTCTTATTTCCTTTGGT 58.925 36.000 0.00 0.00 0.00 3.67
238 239 6.208599 TCATGTGGTTCTTATTTCCTTTGGTC 59.791 38.462 0.00 0.00 0.00 4.02
239 240 5.450453 TGTGGTTCTTATTTCCTTTGGTCA 58.550 37.500 0.00 0.00 0.00 4.02
240 241 6.074648 TGTGGTTCTTATTTCCTTTGGTCAT 58.925 36.000 0.00 0.00 0.00 3.06
241 242 6.015519 TGTGGTTCTTATTTCCTTTGGTCATG 60.016 38.462 0.00 0.00 0.00 3.07
242 243 5.047377 TGGTTCTTATTTCCTTTGGTCATGC 60.047 40.000 0.00 0.00 0.00 4.06
243 244 5.185828 GGTTCTTATTTCCTTTGGTCATGCT 59.814 40.000 0.00 0.00 0.00 3.79
244 245 6.377146 GGTTCTTATTTCCTTTGGTCATGCTA 59.623 38.462 0.00 0.00 0.00 3.49
245 246 7.068716 GGTTCTTATTTCCTTTGGTCATGCTAT 59.931 37.037 0.00 0.00 0.00 2.97
246 247 8.470002 GTTCTTATTTCCTTTGGTCATGCTATT 58.530 33.333 0.00 0.00 0.00 1.73
247 248 8.225603 TCTTATTTCCTTTGGTCATGCTATTC 57.774 34.615 0.00 0.00 0.00 1.75
248 249 8.055181 TCTTATTTCCTTTGGTCATGCTATTCT 58.945 33.333 0.00 0.00 0.00 2.40
249 250 9.342308 CTTATTTCCTTTGGTCATGCTATTCTA 57.658 33.333 0.00 0.00 0.00 2.10
250 251 7.814264 ATTTCCTTTGGTCATGCTATTCTAG 57.186 36.000 0.00 0.00 0.00 2.43
251 252 5.296151 TCCTTTGGTCATGCTATTCTAGG 57.704 43.478 0.00 0.00 0.00 3.02
252 253 3.817647 CCTTTGGTCATGCTATTCTAGGC 59.182 47.826 0.00 0.00 0.00 3.93
253 254 4.454678 CTTTGGTCATGCTATTCTAGGCA 58.545 43.478 0.00 0.00 42.80 4.75
254 255 4.502105 TTGGTCATGCTATTCTAGGCAA 57.498 40.909 0.00 0.00 41.90 4.52
255 256 4.077300 TGGTCATGCTATTCTAGGCAAG 57.923 45.455 0.00 0.00 41.90 4.01
256 257 3.711190 TGGTCATGCTATTCTAGGCAAGA 59.289 43.478 0.00 0.00 41.90 3.02
257 258 4.349048 TGGTCATGCTATTCTAGGCAAGAT 59.651 41.667 1.02 0.00 41.90 2.40
258 259 5.163163 TGGTCATGCTATTCTAGGCAAGATT 60.163 40.000 1.02 0.00 41.90 2.40
259 260 5.767168 GGTCATGCTATTCTAGGCAAGATTT 59.233 40.000 1.02 0.00 41.90 2.17
260 261 6.293845 GGTCATGCTATTCTAGGCAAGATTTG 60.294 42.308 1.02 0.00 41.90 2.32
261 262 6.484643 GTCATGCTATTCTAGGCAAGATTTGA 59.515 38.462 1.02 0.00 41.90 2.69
262 263 7.174599 GTCATGCTATTCTAGGCAAGATTTGAT 59.825 37.037 1.02 0.00 41.90 2.57
263 264 6.872628 TGCTATTCTAGGCAAGATTTGATG 57.127 37.500 0.00 0.00 35.40 3.07
264 265 6.594744 TGCTATTCTAGGCAAGATTTGATGA 58.405 36.000 0.00 0.00 35.40 2.92
265 266 7.229308 TGCTATTCTAGGCAAGATTTGATGAT 58.771 34.615 0.00 0.00 35.40 2.45
266 267 7.174426 TGCTATTCTAGGCAAGATTTGATGATG 59.826 37.037 0.00 0.00 35.40 3.07
267 268 7.174599 GCTATTCTAGGCAAGATTTGATGATGT 59.825 37.037 0.00 0.00 33.05 3.06
268 269 7.893124 ATTCTAGGCAAGATTTGATGATGTT 57.107 32.000 0.00 0.00 33.05 2.71
269 270 6.932356 TCTAGGCAAGATTTGATGATGTTC 57.068 37.500 0.00 0.00 0.00 3.18
270 271 6.656902 TCTAGGCAAGATTTGATGATGTTCT 58.343 36.000 0.00 0.00 0.00 3.01
271 272 7.114754 TCTAGGCAAGATTTGATGATGTTCTT 58.885 34.615 0.00 0.00 0.00 2.52
272 273 6.205101 AGGCAAGATTTGATGATGTTCTTC 57.795 37.500 0.00 0.00 0.00 2.87
273 274 5.713389 AGGCAAGATTTGATGATGTTCTTCA 59.287 36.000 0.00 0.00 0.00 3.02
274 275 6.209986 AGGCAAGATTTGATGATGTTCTTCAA 59.790 34.615 2.70 2.70 38.32 2.69
275 276 7.039882 GGCAAGATTTGATGATGTTCTTCAAT 58.960 34.615 6.65 0.02 39.33 2.57
276 277 7.010183 GGCAAGATTTGATGATGTTCTTCAATG 59.990 37.037 6.65 4.38 39.33 2.82
277 278 7.544566 GCAAGATTTGATGATGTTCTTCAATGT 59.455 33.333 6.65 1.14 39.33 2.71
333 334 7.630470 TCTTGTAAAAACAAAATGTATGCGG 57.370 32.000 0.00 0.00 0.00 5.69
334 335 7.426410 TCTTGTAAAAACAAAATGTATGCGGA 58.574 30.769 0.00 0.00 0.00 5.54
335 336 6.994868 TGTAAAAACAAAATGTATGCGGAC 57.005 33.333 0.00 0.00 0.00 4.79
336 337 6.504398 TGTAAAAACAAAATGTATGCGGACA 58.496 32.000 0.00 0.00 0.00 4.02
337 338 6.978659 TGTAAAAACAAAATGTATGCGGACAA 59.021 30.769 0.00 0.00 31.83 3.18
338 339 7.653713 TGTAAAAACAAAATGTATGCGGACAAT 59.346 29.630 0.00 0.00 31.83 2.71
339 340 9.130312 GTAAAAACAAAATGTATGCGGACAATA 57.870 29.630 0.00 0.00 31.83 1.90
340 341 8.770438 AAAAACAAAATGTATGCGGACAATAT 57.230 26.923 0.00 0.00 31.83 1.28
341 342 7.754069 AAACAAAATGTATGCGGACAATATG 57.246 32.000 0.00 0.00 31.83 1.78
342 343 5.280945 ACAAAATGTATGCGGACAATATGC 58.719 37.500 0.00 0.00 31.83 3.14
343 344 4.503741 AAATGTATGCGGACAATATGCC 57.496 40.909 0.00 0.00 31.83 4.40
348 349 2.587753 CGGACAATATGCCGCCGT 60.588 61.111 0.00 0.00 41.17 5.68
349 350 2.881266 CGGACAATATGCCGCCGTG 61.881 63.158 0.00 0.00 41.17 4.94
350 351 1.817941 GGACAATATGCCGCCGTGT 60.818 57.895 0.00 0.00 0.00 4.49
351 352 1.351707 GACAATATGCCGCCGTGTG 59.648 57.895 0.00 0.00 0.00 3.82
352 353 1.366111 GACAATATGCCGCCGTGTGT 61.366 55.000 0.00 0.00 0.00 3.72
353 354 0.958382 ACAATATGCCGCCGTGTGTT 60.958 50.000 0.00 0.00 0.00 3.32
354 355 0.523125 CAATATGCCGCCGTGTGTTG 60.523 55.000 0.00 0.00 0.00 3.33
355 356 1.653094 AATATGCCGCCGTGTGTTGG 61.653 55.000 0.00 0.00 0.00 3.77
361 362 4.264638 GCCGTGTGTTGGGTGCAC 62.265 66.667 8.80 8.80 37.37 4.57
362 363 2.826287 CCGTGTGTTGGGTGCACA 60.826 61.111 20.43 0.00 43.60 4.57
363 364 2.715005 CGTGTGTTGGGTGCACAG 59.285 61.111 20.43 0.00 45.96 3.66
364 365 2.412937 GTGTGTTGGGTGCACAGC 59.587 61.111 20.43 1.23 45.96 4.40
365 366 3.137637 GTGTGTTGGGTGCACAGCC 62.138 63.158 20.43 12.29 45.96 4.85
376 377 3.264897 CACAGCCGGCGCATCTAC 61.265 66.667 23.20 0.00 37.52 2.59
377 378 3.770040 ACAGCCGGCGCATCTACA 61.770 61.111 23.20 0.00 37.52 2.74
378 379 2.511373 CAGCCGGCGCATCTACAA 60.511 61.111 23.20 0.00 37.52 2.41
379 380 2.106074 CAGCCGGCGCATCTACAAA 61.106 57.895 23.20 0.00 37.52 2.83
380 381 1.153168 AGCCGGCGCATCTACAAAT 60.153 52.632 23.20 0.00 37.52 2.32
381 382 1.160329 AGCCGGCGCATCTACAAATC 61.160 55.000 23.20 0.00 37.52 2.17
382 383 1.941812 CCGGCGCATCTACAAATCC 59.058 57.895 10.83 0.00 0.00 3.01
383 384 1.564622 CGGCGCATCTACAAATCCG 59.435 57.895 10.83 0.00 0.00 4.18
384 385 1.831389 CGGCGCATCTACAAATCCGG 61.831 60.000 10.83 0.00 32.55 5.14
385 386 0.531974 GGCGCATCTACAAATCCGGA 60.532 55.000 6.61 6.61 0.00 5.14
386 387 0.582005 GCGCATCTACAAATCCGGAC 59.418 55.000 6.12 0.00 0.00 4.79
387 388 1.934589 CGCATCTACAAATCCGGACA 58.065 50.000 6.12 0.00 0.00 4.02
388 389 1.860950 CGCATCTACAAATCCGGACAG 59.139 52.381 6.12 1.38 0.00 3.51
389 390 2.213499 GCATCTACAAATCCGGACAGG 58.787 52.381 6.12 0.44 42.97 4.00
390 391 2.213499 CATCTACAAATCCGGACAGGC 58.787 52.381 6.12 0.00 40.77 4.85
391 392 1.271856 TCTACAAATCCGGACAGGCA 58.728 50.000 6.12 0.00 40.77 4.75
392 393 1.066430 TCTACAAATCCGGACAGGCAC 60.066 52.381 6.12 0.00 40.77 5.01
393 394 0.390603 TACAAATCCGGACAGGCACG 60.391 55.000 6.12 0.00 40.77 5.34
394 395 1.375396 CAAATCCGGACAGGCACGA 60.375 57.895 6.12 0.00 40.77 4.35
395 396 0.744414 CAAATCCGGACAGGCACGAT 60.744 55.000 6.12 0.00 40.77 3.73
396 397 0.035439 AAATCCGGACAGGCACGATT 60.035 50.000 6.12 0.00 40.77 3.34
397 398 0.462047 AATCCGGACAGGCACGATTC 60.462 55.000 6.12 0.00 40.77 2.52
398 399 2.311688 ATCCGGACAGGCACGATTCC 62.312 60.000 6.12 0.00 40.77 3.01
399 400 2.264480 CGGACAGGCACGATTCCA 59.736 61.111 0.00 0.00 0.00 3.53
400 401 1.153369 CGGACAGGCACGATTCCAT 60.153 57.895 0.00 0.00 0.00 3.41
401 402 0.744414 CGGACAGGCACGATTCCATT 60.744 55.000 0.00 0.00 0.00 3.16
402 403 1.472552 CGGACAGGCACGATTCCATTA 60.473 52.381 0.00 0.00 0.00 1.90
403 404 2.806745 CGGACAGGCACGATTCCATTAT 60.807 50.000 0.00 0.00 0.00 1.28
404 405 2.808543 GGACAGGCACGATTCCATTATC 59.191 50.000 0.00 0.00 0.00 1.75
405 406 3.466836 GACAGGCACGATTCCATTATCA 58.533 45.455 0.00 0.00 0.00 2.15
406 407 4.067896 GACAGGCACGATTCCATTATCAT 58.932 43.478 0.00 0.00 0.00 2.45
407 408 4.067896 ACAGGCACGATTCCATTATCATC 58.932 43.478 0.00 0.00 0.00 2.92
408 409 4.202398 ACAGGCACGATTCCATTATCATCT 60.202 41.667 0.00 0.00 0.00 2.90
409 410 4.758674 CAGGCACGATTCCATTATCATCTT 59.241 41.667 0.00 0.00 0.00 2.40
410 411 5.240183 CAGGCACGATTCCATTATCATCTTT 59.760 40.000 0.00 0.00 0.00 2.52
411 412 6.427853 CAGGCACGATTCCATTATCATCTTTA 59.572 38.462 0.00 0.00 0.00 1.85
412 413 7.120285 CAGGCACGATTCCATTATCATCTTTAT 59.880 37.037 0.00 0.00 0.00 1.40
413 414 8.321353 AGGCACGATTCCATTATCATCTTTATA 58.679 33.333 0.00 0.00 0.00 0.98
414 415 8.946085 GGCACGATTCCATTATCATCTTTATAA 58.054 33.333 0.00 0.00 0.00 0.98
437 438 5.881637 ACAAATGAAAAACGGATGAAACG 57.118 34.783 0.00 0.00 37.36 3.60
445 446 2.766970 ACGGATGAAACGTTGGTTTG 57.233 45.000 0.00 0.00 46.04 2.93
446 447 1.335496 ACGGATGAAACGTTGGTTTGG 59.665 47.619 0.00 0.00 46.04 3.28
447 448 1.604755 CGGATGAAACGTTGGTTTGGA 59.395 47.619 0.00 0.00 46.04 3.53
448 449 2.227865 CGGATGAAACGTTGGTTTGGAT 59.772 45.455 0.00 0.00 46.04 3.41
449 450 3.669557 CGGATGAAACGTTGGTTTGGATC 60.670 47.826 0.00 0.00 46.04 3.36
450 451 3.488489 GATGAAACGTTGGTTTGGATCG 58.512 45.455 0.00 0.00 46.04 3.69
451 452 2.290464 TGAAACGTTGGTTTGGATCGT 58.710 42.857 0.00 0.00 46.04 3.73
452 453 2.032302 TGAAACGTTGGTTTGGATCGTG 59.968 45.455 0.00 0.00 46.04 4.35
453 454 0.309612 AACGTTGGTTTGGATCGTGC 59.690 50.000 0.00 0.00 35.00 5.34
454 455 1.209127 CGTTGGTTTGGATCGTGCC 59.791 57.895 0.00 0.00 0.00 5.01
455 456 1.234615 CGTTGGTTTGGATCGTGCCT 61.235 55.000 0.00 0.00 0.00 4.75
456 457 0.240945 GTTGGTTTGGATCGTGCCTG 59.759 55.000 0.00 0.00 0.00 4.85
457 458 1.523154 TTGGTTTGGATCGTGCCTGC 61.523 55.000 0.00 0.00 0.00 4.85
458 459 2.700773 GGTTTGGATCGTGCCTGCC 61.701 63.158 0.00 0.00 0.00 4.85
459 460 1.971167 GTTTGGATCGTGCCTGCCA 60.971 57.895 0.00 0.00 0.00 4.92
463 464 3.503363 GATCGTGCCTGCCACTGC 61.503 66.667 0.00 0.00 42.42 4.40
476 477 1.575922 CACTGCCACATGGTTGTCG 59.424 57.895 0.00 0.00 37.57 4.35
478 479 0.036732 ACTGCCACATGGTTGTCGAT 59.963 50.000 0.00 0.00 37.57 3.59
493 494 5.050972 GGTTGTCGATAATCATCCGAAGTTC 60.051 44.000 0.00 0.00 0.00 3.01
499 500 2.873133 ATCATCCGAAGTTCGAGTCC 57.127 50.000 26.37 0.00 43.74 3.85
501 502 1.472878 TCATCCGAAGTTCGAGTCCTG 59.527 52.381 26.37 14.45 43.74 3.86
514 515 4.710167 TCCTGACGCGAGGACGGA 62.710 66.667 15.93 8.23 37.20 4.69
517 518 3.384014 CTGACGCGAGGACGGACTC 62.384 68.421 15.93 0.00 40.15 3.36
523 524 1.502640 CGAGGACGGACTCTGACAC 59.497 63.158 6.98 0.00 35.33 3.67
536 537 1.891060 CTGACACTTTGACGAGGCGC 61.891 60.000 0.00 0.00 0.00 6.53
576 577 0.744414 CCTACACCGAAGCACATGGG 60.744 60.000 0.00 0.00 0.00 4.00
764 784 2.029369 CCCCACCGACGACGAAAA 59.971 61.111 9.28 0.00 42.66 2.29
791 813 4.056125 CTCGCCGTCTCACTGCCA 62.056 66.667 0.00 0.00 0.00 4.92
843 866 2.357517 CCTCGTGTCGCCAAAGCT 60.358 61.111 0.00 0.00 36.60 3.74
1403 1438 2.047274 CACCAAGATGGACGGCGT 60.047 61.111 14.65 14.65 40.96 5.68
1716 1757 2.612760 CCTCTGGATCAAGGAGGCA 58.387 57.895 12.65 0.00 39.87 4.75
1773 1814 0.324275 AGAAGGAGAGGCTCGAGCTT 60.324 55.000 34.46 29.44 41.70 3.74
1807 1848 0.532862 CGACGAGGGGAATTGATGGG 60.533 60.000 0.00 0.00 0.00 4.00
1905 1947 6.040278 TCAATCTGTTTGTTATGCTGGTTTCA 59.960 34.615 0.00 0.00 36.65 2.69
1976 2020 6.185511 TGGTAGTATGCTCTTGTGTAGTAGT 58.814 40.000 0.00 0.00 0.00 2.73
1977 2021 6.318144 TGGTAGTATGCTCTTGTGTAGTAGTC 59.682 42.308 0.00 0.00 0.00 2.59
2012 2056 2.885135 ATGAACCAGTCCTCATTGCA 57.115 45.000 0.00 0.00 0.00 4.08
2014 2058 2.507484 TGAACCAGTCCTCATTGCAAG 58.493 47.619 4.94 0.00 0.00 4.01
2015 2059 2.106338 TGAACCAGTCCTCATTGCAAGA 59.894 45.455 4.94 1.87 0.00 3.02
2016 2060 2.486472 ACCAGTCCTCATTGCAAGAG 57.514 50.000 4.94 11.51 0.00 2.85
2017 2061 1.980765 ACCAGTCCTCATTGCAAGAGA 59.019 47.619 20.66 13.58 35.09 3.10
2018 2062 2.575279 ACCAGTCCTCATTGCAAGAGAT 59.425 45.455 20.66 8.79 35.09 2.75
2020 2064 4.225942 ACCAGTCCTCATTGCAAGAGATTA 59.774 41.667 20.66 8.48 35.09 1.75
2022 2066 5.469421 CCAGTCCTCATTGCAAGAGATTATC 59.531 44.000 20.66 10.15 35.09 1.75
2035 2079 5.240013 AGAGATTATCATCCTTTGGCCTC 57.760 43.478 3.32 0.00 0.00 4.70
2063 2108 2.615912 GTCAGTTCTGCTGCTCTTGTTT 59.384 45.455 0.00 0.00 44.66 2.83
2064 2109 2.874701 TCAGTTCTGCTGCTCTTGTTTC 59.125 45.455 0.00 0.00 44.66 2.78
2065 2110 2.877168 CAGTTCTGCTGCTCTTGTTTCT 59.123 45.455 0.00 0.00 38.52 2.52
2066 2111 2.877168 AGTTCTGCTGCTCTTGTTTCTG 59.123 45.455 0.00 0.00 0.00 3.02
2067 2112 2.874701 GTTCTGCTGCTCTTGTTTCTGA 59.125 45.455 0.00 0.00 0.00 3.27
2068 2113 3.413846 TCTGCTGCTCTTGTTTCTGAT 57.586 42.857 0.00 0.00 0.00 2.90
2069 2114 3.332919 TCTGCTGCTCTTGTTTCTGATC 58.667 45.455 0.00 0.00 0.00 2.92
2070 2115 2.071540 TGCTGCTCTTGTTTCTGATCG 58.928 47.619 0.00 0.00 0.00 3.69
2092 2137 3.554324 GCACCATGCTTGCTGAATTAATG 59.446 43.478 9.65 0.00 40.96 1.90
2144 2194 0.815734 CAATCTGGCTGGCAGGAAAG 59.184 55.000 28.04 13.70 0.00 2.62
2192 2242 4.614284 GCTGAAAACGATGTCATCTGTTTG 59.386 41.667 23.81 17.06 36.70 2.93
2193 2243 4.536065 TGAAAACGATGTCATCTGTTTGC 58.464 39.130 23.81 22.81 36.70 3.68
2194 2244 4.036144 TGAAAACGATGTCATCTGTTTGCA 59.964 37.500 24.67 24.67 38.14 4.08
2195 2245 3.818961 AACGATGTCATCTGTTTGCAG 57.181 42.857 11.04 0.00 43.87 4.41
2196 2246 2.771089 ACGATGTCATCTGTTTGCAGT 58.229 42.857 11.04 0.00 43.05 4.40
2197 2247 3.141398 ACGATGTCATCTGTTTGCAGTT 58.859 40.909 11.04 0.00 43.05 3.16
2213 2264 3.225798 TTGCAGGCAGGGTTGTGC 61.226 61.111 0.00 0.00 43.19 4.57
2229 2280 1.885887 TGTGCTGGTCATTTGGTTAGC 59.114 47.619 0.00 0.00 0.00 3.09
2287 2338 1.398692 TCTTTGTGTTCCTTGGCACC 58.601 50.000 0.00 0.00 34.94 5.01
2288 2339 1.064017 TCTTTGTGTTCCTTGGCACCT 60.064 47.619 0.00 0.00 34.94 4.00
2303 2354 1.978617 ACCTCGGCAAAATGGCTGG 60.979 57.895 2.37 6.77 41.25 4.85
2321 2372 0.110486 GGCTTCTTGTGTTCCTGGGA 59.890 55.000 0.00 0.00 0.00 4.37
2330 2381 2.285668 TTCCTGGGAGCTGGGAGG 60.286 66.667 0.00 0.00 0.00 4.30
2364 2415 4.157656 TCTTGTGTTGGTCTTTTGGTTCAG 59.842 41.667 0.00 0.00 0.00 3.02
2410 2461 1.012486 GCACTGCAGCAAAATGGCTC 61.012 55.000 15.27 0.00 43.68 4.70
2446 2497 2.360852 GCACTGCAGCCAGATGGT 60.361 61.111 15.27 0.00 41.77 3.55
2447 2498 1.078214 GCACTGCAGCCAGATGGTA 60.078 57.895 15.27 0.00 41.77 3.25
2448 2499 1.094073 GCACTGCAGCCAGATGGTAG 61.094 60.000 15.27 0.00 41.77 3.18
2519 2580 1.342496 TGACTCTGCAGAGACCACTTG 59.658 52.381 42.76 20.35 44.74 3.16
2593 2654 1.893919 GCTGGACCAGACAGGGAGAC 61.894 65.000 26.25 0.00 43.89 3.36
2604 2665 0.319900 CAGGGAGACGTGTCCTTGTG 60.320 60.000 29.17 20.46 38.58 3.33
2706 2767 2.436646 CCATCAGTGGTGGACCGC 60.437 66.667 18.32 0.77 46.57 5.68
2732 2793 2.230994 CTGGAGCTGGAGCACGCTAA 62.231 60.000 0.00 0.00 45.16 3.09
2733 2794 1.144936 GGAGCTGGAGCACGCTAAT 59.855 57.895 0.00 0.00 45.16 1.73
2734 2795 1.156645 GGAGCTGGAGCACGCTAATG 61.157 60.000 0.00 0.00 45.16 1.90
2735 2796 1.153289 AGCTGGAGCACGCTAATGG 60.153 57.895 0.65 0.00 45.16 3.16
2736 2797 1.153369 GCTGGAGCACGCTAATGGA 60.153 57.895 0.00 0.00 41.59 3.41
2752 2813 1.377987 GGACGCATACCTTTGGGCA 60.378 57.895 0.00 0.00 35.63 5.36
2754 2815 0.170339 GACGCATACCTTTGGGCAAC 59.830 55.000 0.00 0.00 35.63 4.17
2775 2836 4.941325 CAGAATCCAATGTCTGTCTGTG 57.059 45.455 0.00 0.00 37.16 3.66
2779 2840 2.046292 TCCAATGTCTGTCTGTGACCA 58.954 47.619 0.00 0.00 33.83 4.02
2789 2850 1.302033 CTGTGACCACTGCTCACCC 60.302 63.158 2.62 0.00 37.79 4.61
2802 2863 1.399727 GCTCACCCGTTTGACAAATCG 60.400 52.381 3.49 9.40 0.00 3.34
2803 2864 2.139917 CTCACCCGTTTGACAAATCGA 58.860 47.619 18.29 0.00 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.523916 ACGAACATCTATTAAATTGCGCTCT 59.476 36.000 9.73 0.00 0.00 4.09
1 2 5.617187 CACGAACATCTATTAAATTGCGCTC 59.383 40.000 9.73 0.00 0.00 5.03
2 3 5.501715 CACGAACATCTATTAAATTGCGCT 58.498 37.500 9.73 0.00 0.00 5.92
3 4 4.144731 GCACGAACATCTATTAAATTGCGC 59.855 41.667 0.00 0.00 0.00 6.09
4 5 5.169561 GTGCACGAACATCTATTAAATTGCG 59.830 40.000 0.00 0.00 0.00 4.85
5 6 6.258160 AGTGCACGAACATCTATTAAATTGC 58.742 36.000 12.01 0.00 0.00 3.56
6 7 7.750458 ACAAGTGCACGAACATCTATTAAATTG 59.250 33.333 12.01 6.96 0.00 2.32
7 8 7.816640 ACAAGTGCACGAACATCTATTAAATT 58.183 30.769 12.01 0.00 0.00 1.82
8 9 7.377766 ACAAGTGCACGAACATCTATTAAAT 57.622 32.000 12.01 0.00 0.00 1.40
9 10 6.795098 ACAAGTGCACGAACATCTATTAAA 57.205 33.333 12.01 0.00 0.00 1.52
10 11 6.598525 CAACAAGTGCACGAACATCTATTAA 58.401 36.000 12.01 0.00 0.00 1.40
11 12 6.164408 CAACAAGTGCACGAACATCTATTA 57.836 37.500 12.01 0.00 0.00 0.98
12 13 5.034554 CAACAAGTGCACGAACATCTATT 57.965 39.130 12.01 0.00 0.00 1.73
13 14 4.668576 CAACAAGTGCACGAACATCTAT 57.331 40.909 12.01 0.00 0.00 1.98
26 27 7.548097 TCTAACCTCTATTCTAGCAACAAGTG 58.452 38.462 0.00 0.00 0.00 3.16
27 28 7.616150 TCTCTAACCTCTATTCTAGCAACAAGT 59.384 37.037 0.00 0.00 0.00 3.16
28 29 8.001881 TCTCTAACCTCTATTCTAGCAACAAG 57.998 38.462 0.00 0.00 0.00 3.16
29 30 7.956328 TCTCTAACCTCTATTCTAGCAACAA 57.044 36.000 0.00 0.00 0.00 2.83
30 31 7.780271 TCATCTCTAACCTCTATTCTAGCAACA 59.220 37.037 0.00 0.00 0.00 3.33
31 32 8.172352 TCATCTCTAACCTCTATTCTAGCAAC 57.828 38.462 0.00 0.00 0.00 4.17
32 33 8.221251 TCTCATCTCTAACCTCTATTCTAGCAA 58.779 37.037 0.00 0.00 0.00 3.91
33 34 7.663905 GTCTCATCTCTAACCTCTATTCTAGCA 59.336 40.741 0.00 0.00 0.00 3.49
34 35 7.883311 AGTCTCATCTCTAACCTCTATTCTAGC 59.117 40.741 0.00 0.00 0.00 3.42
37 38 9.166222 TCTAGTCTCATCTCTAACCTCTATTCT 57.834 37.037 0.00 0.00 0.00 2.40
38 39 9.959721 ATCTAGTCTCATCTCTAACCTCTATTC 57.040 37.037 0.00 0.00 0.00 1.75
39 40 9.739276 CATCTAGTCTCATCTCTAACCTCTATT 57.261 37.037 0.00 0.00 0.00 1.73
40 41 7.829211 GCATCTAGTCTCATCTCTAACCTCTAT 59.171 40.741 0.00 0.00 0.00 1.98
41 42 7.165485 GCATCTAGTCTCATCTCTAACCTCTA 58.835 42.308 0.00 0.00 0.00 2.43
42 43 6.003950 GCATCTAGTCTCATCTCTAACCTCT 58.996 44.000 0.00 0.00 0.00 3.69
43 44 5.106712 CGCATCTAGTCTCATCTCTAACCTC 60.107 48.000 0.00 0.00 0.00 3.85
44 45 4.759693 CGCATCTAGTCTCATCTCTAACCT 59.240 45.833 0.00 0.00 0.00 3.50
45 46 4.083003 CCGCATCTAGTCTCATCTCTAACC 60.083 50.000 0.00 0.00 0.00 2.85
46 47 4.757657 TCCGCATCTAGTCTCATCTCTAAC 59.242 45.833 0.00 0.00 0.00 2.34
47 48 4.974399 TCCGCATCTAGTCTCATCTCTAA 58.026 43.478 0.00 0.00 0.00 2.10
48 49 4.284746 TCTCCGCATCTAGTCTCATCTCTA 59.715 45.833 0.00 0.00 0.00 2.43
49 50 3.072330 TCTCCGCATCTAGTCTCATCTCT 59.928 47.826 0.00 0.00 0.00 3.10
50 51 3.407698 TCTCCGCATCTAGTCTCATCTC 58.592 50.000 0.00 0.00 0.00 2.75
51 52 3.500448 TCTCCGCATCTAGTCTCATCT 57.500 47.619 0.00 0.00 0.00 2.90
52 53 4.202060 TGTTTCTCCGCATCTAGTCTCATC 60.202 45.833 0.00 0.00 0.00 2.92
53 54 3.701542 TGTTTCTCCGCATCTAGTCTCAT 59.298 43.478 0.00 0.00 0.00 2.90
54 55 3.089284 TGTTTCTCCGCATCTAGTCTCA 58.911 45.455 0.00 0.00 0.00 3.27
55 56 3.784701 TGTTTCTCCGCATCTAGTCTC 57.215 47.619 0.00 0.00 0.00 3.36
56 57 3.673594 CGTTGTTTCTCCGCATCTAGTCT 60.674 47.826 0.00 0.00 0.00 3.24
57 58 2.599082 CGTTGTTTCTCCGCATCTAGTC 59.401 50.000 0.00 0.00 0.00 2.59
58 59 2.029290 ACGTTGTTTCTCCGCATCTAGT 60.029 45.455 0.00 0.00 0.00 2.57
59 60 2.599082 GACGTTGTTTCTCCGCATCTAG 59.401 50.000 0.00 0.00 0.00 2.43
60 61 2.230508 AGACGTTGTTTCTCCGCATCTA 59.769 45.455 0.00 0.00 0.00 1.98
61 62 1.000955 AGACGTTGTTTCTCCGCATCT 59.999 47.619 0.00 0.00 0.00 2.90
62 63 1.429463 AGACGTTGTTTCTCCGCATC 58.571 50.000 0.00 0.00 0.00 3.91
63 64 2.736144 TAGACGTTGTTTCTCCGCAT 57.264 45.000 0.00 0.00 0.00 4.73
64 65 2.512485 TTAGACGTTGTTTCTCCGCA 57.488 45.000 0.00 0.00 0.00 5.69
65 66 3.678548 AGAATTAGACGTTGTTTCTCCGC 59.321 43.478 0.00 0.00 0.00 5.54
66 67 5.840940 AAGAATTAGACGTTGTTTCTCCG 57.159 39.130 0.00 0.00 0.00 4.63
67 68 8.530269 TCTAAAGAATTAGACGTTGTTTCTCC 57.470 34.615 0.00 0.00 41.99 3.71
101 102 2.548057 TCGATCTTGCGTGCTTCTTTTT 59.452 40.909 0.00 0.00 0.00 1.94
102 103 2.143122 TCGATCTTGCGTGCTTCTTTT 58.857 42.857 0.00 0.00 0.00 2.27
103 104 1.728971 CTCGATCTTGCGTGCTTCTTT 59.271 47.619 0.00 0.00 0.00 2.52
104 105 1.354040 CTCGATCTTGCGTGCTTCTT 58.646 50.000 0.00 0.00 0.00 2.52
105 106 1.080995 GCTCGATCTTGCGTGCTTCT 61.081 55.000 0.00 0.00 44.52 2.85
106 107 1.346538 GCTCGATCTTGCGTGCTTC 59.653 57.895 0.00 0.00 44.52 3.86
107 108 2.103042 GGCTCGATCTTGCGTGCTT 61.103 57.895 10.01 0.00 46.39 3.91
108 109 2.510238 GGCTCGATCTTGCGTGCT 60.510 61.111 10.01 0.00 46.39 4.40
109 110 2.029904 GAAGGCTCGATCTTGCGTGC 62.030 60.000 5.98 0.00 46.43 5.34
110 111 2.002127 GAAGGCTCGATCTTGCGTG 58.998 57.895 5.98 0.00 0.00 5.34
111 112 4.504132 GAAGGCTCGATCTTGCGT 57.496 55.556 5.98 0.00 0.00 5.24
121 122 4.060900 TCATTATTGATCTGCGAAGGCTC 58.939 43.478 0.00 0.00 40.82 4.70
122 123 4.077300 TCATTATTGATCTGCGAAGGCT 57.923 40.909 0.00 0.00 40.82 4.58
123 124 4.531332 GTTCATTATTGATCTGCGAAGGC 58.469 43.478 0.00 0.00 40.52 4.35
124 125 4.766007 CGTTCATTATTGATCTGCGAAGG 58.234 43.478 0.00 0.00 0.00 3.46
125 126 4.206843 GCGTTCATTATTGATCTGCGAAG 58.793 43.478 0.00 0.00 0.00 3.79
126 127 3.620821 TGCGTTCATTATTGATCTGCGAA 59.379 39.130 0.00 0.00 30.57 4.70
127 128 3.194062 TGCGTTCATTATTGATCTGCGA 58.806 40.909 0.00 0.00 30.57 5.10
128 129 3.590720 TGCGTTCATTATTGATCTGCG 57.409 42.857 0.00 0.00 30.57 5.18
129 130 4.084380 TCGATGCGTTCATTATTGATCTGC 60.084 41.667 0.00 0.00 31.96 4.26
130 131 5.403466 TCTCGATGCGTTCATTATTGATCTG 59.597 40.000 0.00 0.00 31.96 2.90
131 132 5.532557 TCTCGATGCGTTCATTATTGATCT 58.467 37.500 0.00 0.00 31.96 2.75
132 133 5.829233 TCTCGATGCGTTCATTATTGATC 57.171 39.130 0.00 0.00 31.96 2.92
133 134 5.178252 CCTTCTCGATGCGTTCATTATTGAT 59.822 40.000 0.00 0.00 31.96 2.57
134 135 4.507756 CCTTCTCGATGCGTTCATTATTGA 59.492 41.667 0.00 0.00 31.96 2.57
135 136 4.766007 CCTTCTCGATGCGTTCATTATTG 58.234 43.478 0.00 0.00 31.96 1.90
136 137 3.248602 GCCTTCTCGATGCGTTCATTATT 59.751 43.478 0.00 0.00 31.96 1.40
137 138 2.802816 GCCTTCTCGATGCGTTCATTAT 59.197 45.455 0.00 0.00 31.96 1.28
138 139 2.201732 GCCTTCTCGATGCGTTCATTA 58.798 47.619 0.00 0.00 31.96 1.90
139 140 1.009829 GCCTTCTCGATGCGTTCATT 58.990 50.000 0.00 0.00 31.96 2.57
140 141 0.108186 TGCCTTCTCGATGCGTTCAT 60.108 50.000 0.00 0.00 35.17 2.57
141 142 1.014044 GTGCCTTCTCGATGCGTTCA 61.014 55.000 0.00 0.00 0.00 3.18
142 143 0.737715 AGTGCCTTCTCGATGCGTTC 60.738 55.000 0.00 0.00 0.00 3.95
143 144 0.530744 TAGTGCCTTCTCGATGCGTT 59.469 50.000 0.00 0.00 0.00 4.84
144 145 0.530744 TTAGTGCCTTCTCGATGCGT 59.469 50.000 0.00 0.00 0.00 5.24
145 146 1.789464 GATTAGTGCCTTCTCGATGCG 59.211 52.381 0.00 0.00 0.00 4.73
146 147 2.139118 GGATTAGTGCCTTCTCGATGC 58.861 52.381 0.00 0.00 0.00 3.91
147 148 3.459232 TGGATTAGTGCCTTCTCGATG 57.541 47.619 0.00 0.00 0.00 3.84
148 149 3.452627 AGTTGGATTAGTGCCTTCTCGAT 59.547 43.478 0.00 0.00 0.00 3.59
149 150 2.832129 AGTTGGATTAGTGCCTTCTCGA 59.168 45.455 0.00 0.00 0.00 4.04
150 151 3.252974 AGTTGGATTAGTGCCTTCTCG 57.747 47.619 0.00 0.00 0.00 4.04
151 152 5.488341 TGTAAGTTGGATTAGTGCCTTCTC 58.512 41.667 0.00 0.00 0.00 2.87
152 153 5.491982 CTGTAAGTTGGATTAGTGCCTTCT 58.508 41.667 0.00 0.00 0.00 2.85
153 154 4.636206 CCTGTAAGTTGGATTAGTGCCTTC 59.364 45.833 0.00 0.00 0.00 3.46
154 155 4.288626 TCCTGTAAGTTGGATTAGTGCCTT 59.711 41.667 0.00 0.00 0.00 4.35
155 156 3.844211 TCCTGTAAGTTGGATTAGTGCCT 59.156 43.478 0.00 0.00 0.00 4.75
156 157 4.192317 CTCCTGTAAGTTGGATTAGTGCC 58.808 47.826 0.00 0.00 0.00 5.01
157 158 3.623510 GCTCCTGTAAGTTGGATTAGTGC 59.376 47.826 0.00 0.00 0.00 4.40
158 159 4.832248 TGCTCCTGTAAGTTGGATTAGTG 58.168 43.478 0.00 0.00 0.00 2.74
159 160 4.532521 ACTGCTCCTGTAAGTTGGATTAGT 59.467 41.667 0.00 0.00 0.00 2.24
160 161 5.091261 ACTGCTCCTGTAAGTTGGATTAG 57.909 43.478 0.00 0.00 0.00 1.73
161 162 5.499004 AACTGCTCCTGTAAGTTGGATTA 57.501 39.130 0.00 0.00 33.01 1.75
162 163 4.373156 AACTGCTCCTGTAAGTTGGATT 57.627 40.909 0.00 0.00 33.01 3.01
163 164 5.189736 TCATAACTGCTCCTGTAAGTTGGAT 59.810 40.000 0.00 0.00 35.77 3.41
164 165 4.530553 TCATAACTGCTCCTGTAAGTTGGA 59.469 41.667 0.00 0.00 35.77 3.53
165 166 4.832248 TCATAACTGCTCCTGTAAGTTGG 58.168 43.478 0.00 0.00 35.77 3.77
166 167 6.428159 ACTTTCATAACTGCTCCTGTAAGTTG 59.572 38.462 0.00 0.00 35.77 3.16
167 168 6.534634 ACTTTCATAACTGCTCCTGTAAGTT 58.465 36.000 0.00 0.00 37.82 2.66
168 169 6.115448 ACTTTCATAACTGCTCCTGTAAGT 57.885 37.500 0.00 0.00 0.00 2.24
169 170 6.128172 CCAACTTTCATAACTGCTCCTGTAAG 60.128 42.308 0.00 0.00 0.00 2.34
170 171 5.705441 CCAACTTTCATAACTGCTCCTGTAA 59.295 40.000 0.00 0.00 0.00 2.41
171 172 5.012664 TCCAACTTTCATAACTGCTCCTGTA 59.987 40.000 0.00 0.00 0.00 2.74
172 173 4.074970 CCAACTTTCATAACTGCTCCTGT 58.925 43.478 0.00 0.00 0.00 4.00
173 174 4.326826 TCCAACTTTCATAACTGCTCCTG 58.673 43.478 0.00 0.00 0.00 3.86
174 175 4.640771 TCCAACTTTCATAACTGCTCCT 57.359 40.909 0.00 0.00 0.00 3.69
175 176 7.573968 AATATCCAACTTTCATAACTGCTCC 57.426 36.000 0.00 0.00 0.00 4.70
176 177 9.508567 GAAAATATCCAACTTTCATAACTGCTC 57.491 33.333 0.00 0.00 0.00 4.26
177 178 9.247861 AGAAAATATCCAACTTTCATAACTGCT 57.752 29.630 0.92 0.00 32.59 4.24
206 207 9.927081 AGGAAATAAGAACCACATGAAGATATT 57.073 29.630 0.00 0.00 0.00 1.28
207 208 9.927081 AAGGAAATAAGAACCACATGAAGATAT 57.073 29.630 0.00 0.00 0.00 1.63
208 209 9.753674 AAAGGAAATAAGAACCACATGAAGATA 57.246 29.630 0.00 0.00 0.00 1.98
209 210 8.526147 CAAAGGAAATAAGAACCACATGAAGAT 58.474 33.333 0.00 0.00 0.00 2.40
210 211 7.039784 CCAAAGGAAATAAGAACCACATGAAGA 60.040 37.037 0.00 0.00 0.00 2.87
211 212 7.092716 CCAAAGGAAATAAGAACCACATGAAG 58.907 38.462 0.00 0.00 0.00 3.02
212 213 6.553100 ACCAAAGGAAATAAGAACCACATGAA 59.447 34.615 0.00 0.00 0.00 2.57
213 214 6.074648 ACCAAAGGAAATAAGAACCACATGA 58.925 36.000 0.00 0.00 0.00 3.07
214 215 6.015519 TGACCAAAGGAAATAAGAACCACATG 60.016 38.462 0.00 0.00 0.00 3.21
215 216 6.074648 TGACCAAAGGAAATAAGAACCACAT 58.925 36.000 0.00 0.00 0.00 3.21
216 217 5.450453 TGACCAAAGGAAATAAGAACCACA 58.550 37.500 0.00 0.00 0.00 4.17
217 218 6.389906 CATGACCAAAGGAAATAAGAACCAC 58.610 40.000 0.00 0.00 0.00 4.16
218 219 5.047377 GCATGACCAAAGGAAATAAGAACCA 60.047 40.000 0.00 0.00 0.00 3.67
219 220 5.185828 AGCATGACCAAAGGAAATAAGAACC 59.814 40.000 0.00 0.00 0.00 3.62
220 221 6.272822 AGCATGACCAAAGGAAATAAGAAC 57.727 37.500 0.00 0.00 0.00 3.01
221 222 8.593945 AATAGCATGACCAAAGGAAATAAGAA 57.406 30.769 0.00 0.00 0.00 2.52
222 223 8.055181 AGAATAGCATGACCAAAGGAAATAAGA 58.945 33.333 0.00 0.00 0.00 2.10
223 224 8.230472 AGAATAGCATGACCAAAGGAAATAAG 57.770 34.615 0.00 0.00 0.00 1.73
224 225 9.342308 CTAGAATAGCATGACCAAAGGAAATAA 57.658 33.333 0.00 0.00 0.00 1.40
225 226 7.939039 CCTAGAATAGCATGACCAAAGGAAATA 59.061 37.037 0.00 0.00 37.37 1.40
226 227 6.774656 CCTAGAATAGCATGACCAAAGGAAAT 59.225 38.462 0.00 0.00 37.37 2.17
227 228 6.122277 CCTAGAATAGCATGACCAAAGGAAA 58.878 40.000 0.00 0.00 37.37 3.13
228 229 5.684704 CCTAGAATAGCATGACCAAAGGAA 58.315 41.667 0.00 0.00 37.37 3.36
229 230 4.444876 GCCTAGAATAGCATGACCAAAGGA 60.445 45.833 0.00 0.00 37.37 3.36
230 231 3.817647 GCCTAGAATAGCATGACCAAAGG 59.182 47.826 0.00 0.00 37.37 3.11
231 232 4.454678 TGCCTAGAATAGCATGACCAAAG 58.545 43.478 0.00 0.00 37.37 2.77
232 233 4.502105 TGCCTAGAATAGCATGACCAAA 57.498 40.909 0.00 0.00 37.37 3.28
233 234 4.164030 TCTTGCCTAGAATAGCATGACCAA 59.836 41.667 0.00 0.00 37.37 3.67
234 235 3.711190 TCTTGCCTAGAATAGCATGACCA 59.289 43.478 0.00 0.00 37.37 4.02
235 236 4.342862 TCTTGCCTAGAATAGCATGACC 57.657 45.455 0.00 0.00 37.37 4.02
236 237 6.484643 TCAAATCTTGCCTAGAATAGCATGAC 59.515 38.462 0.00 0.00 37.37 3.06
237 238 6.594744 TCAAATCTTGCCTAGAATAGCATGA 58.405 36.000 0.00 8.87 37.37 3.07
238 239 6.872628 TCAAATCTTGCCTAGAATAGCATG 57.127 37.500 0.00 0.00 37.37 4.06
239 240 7.229308 TCATCAAATCTTGCCTAGAATAGCAT 58.771 34.615 0.00 0.00 37.37 3.79
240 241 6.594744 TCATCAAATCTTGCCTAGAATAGCA 58.405 36.000 0.00 0.00 37.37 3.49
241 242 7.174599 ACATCATCAAATCTTGCCTAGAATAGC 59.825 37.037 0.00 0.00 37.37 2.97
242 243 8.618702 ACATCATCAAATCTTGCCTAGAATAG 57.381 34.615 0.00 0.00 36.22 1.73
243 244 8.985315 AACATCATCAAATCTTGCCTAGAATA 57.015 30.769 0.00 0.00 36.22 1.75
244 245 7.778853 AGAACATCATCAAATCTTGCCTAGAAT 59.221 33.333 0.00 0.00 36.22 2.40
245 246 7.114754 AGAACATCATCAAATCTTGCCTAGAA 58.885 34.615 0.00 0.00 36.22 2.10
246 247 6.656902 AGAACATCATCAAATCTTGCCTAGA 58.343 36.000 0.00 0.00 37.28 2.43
247 248 6.939132 AGAACATCATCAAATCTTGCCTAG 57.061 37.500 0.00 0.00 0.00 3.02
248 249 6.885918 TGAAGAACATCATCAAATCTTGCCTA 59.114 34.615 0.00 0.00 30.89 3.93
249 250 5.713389 TGAAGAACATCATCAAATCTTGCCT 59.287 36.000 0.00 0.00 30.89 4.75
250 251 5.957798 TGAAGAACATCATCAAATCTTGCC 58.042 37.500 0.00 0.00 30.89 4.52
251 252 7.544566 ACATTGAAGAACATCATCAAATCTTGC 59.455 33.333 2.62 0.00 37.58 4.01
252 253 8.981724 ACATTGAAGAACATCATCAAATCTTG 57.018 30.769 2.62 0.35 37.58 3.02
307 308 9.347934 CCGCATACATTTTGTTTTTACAAGATA 57.652 29.630 0.00 0.00 0.00 1.98
308 309 8.085296 TCCGCATACATTTTGTTTTTACAAGAT 58.915 29.630 0.00 0.00 0.00 2.40
309 310 7.380065 GTCCGCATACATTTTGTTTTTACAAGA 59.620 33.333 0.00 0.00 0.00 3.02
310 311 7.168302 TGTCCGCATACATTTTGTTTTTACAAG 59.832 33.333 0.00 0.00 0.00 3.16
311 312 6.978659 TGTCCGCATACATTTTGTTTTTACAA 59.021 30.769 0.00 0.00 0.00 2.41
312 313 6.504398 TGTCCGCATACATTTTGTTTTTACA 58.496 32.000 0.00 0.00 0.00 2.41
313 314 6.994868 TGTCCGCATACATTTTGTTTTTAC 57.005 33.333 0.00 0.00 0.00 2.01
314 315 9.862371 ATATTGTCCGCATACATTTTGTTTTTA 57.138 25.926 0.00 0.00 0.00 1.52
315 316 8.655092 CATATTGTCCGCATACATTTTGTTTTT 58.345 29.630 0.00 0.00 0.00 1.94
316 317 7.201513 GCATATTGTCCGCATACATTTTGTTTT 60.202 33.333 0.00 0.00 0.00 2.43
317 318 6.255453 GCATATTGTCCGCATACATTTTGTTT 59.745 34.615 0.00 0.00 0.00 2.83
318 319 5.748152 GCATATTGTCCGCATACATTTTGTT 59.252 36.000 0.00 0.00 0.00 2.83
319 320 5.280945 GCATATTGTCCGCATACATTTTGT 58.719 37.500 0.00 0.00 0.00 2.83
320 321 4.681025 GGCATATTGTCCGCATACATTTTG 59.319 41.667 0.00 0.00 0.00 2.44
321 322 4.556501 CGGCATATTGTCCGCATACATTTT 60.557 41.667 0.00 0.00 39.14 1.82
322 323 3.058293 CGGCATATTGTCCGCATACATTT 60.058 43.478 0.00 0.00 39.14 2.32
323 324 2.483877 CGGCATATTGTCCGCATACATT 59.516 45.455 0.00 0.00 39.14 2.71
324 325 2.076100 CGGCATATTGTCCGCATACAT 58.924 47.619 0.00 0.00 39.14 2.29
325 326 1.507562 CGGCATATTGTCCGCATACA 58.492 50.000 0.00 0.00 39.14 2.29
332 333 1.817941 ACACGGCGGCATATTGTCC 60.818 57.895 13.24 0.00 0.00 4.02
333 334 1.351707 CACACGGCGGCATATTGTC 59.648 57.895 13.24 0.00 0.00 3.18
334 335 0.958382 AACACACGGCGGCATATTGT 60.958 50.000 13.24 1.59 0.00 2.71
335 336 0.523125 CAACACACGGCGGCATATTG 60.523 55.000 13.24 5.32 0.00 1.90
336 337 1.653094 CCAACACACGGCGGCATATT 61.653 55.000 13.24 0.00 0.00 1.28
337 338 2.112198 CCAACACACGGCGGCATAT 61.112 57.895 13.24 0.00 0.00 1.78
338 339 2.744318 CCAACACACGGCGGCATA 60.744 61.111 13.24 0.00 0.00 3.14
344 345 4.264638 GTGCACCCAACACACGGC 62.265 66.667 5.22 0.00 37.96 5.68
345 346 2.826287 TGTGCACCCAACACACGG 60.826 61.111 15.69 0.00 42.88 4.94
346 347 2.715005 CTGTGCACCCAACACACG 59.285 61.111 15.69 0.00 42.88 4.49
347 348 2.412937 GCTGTGCACCCAACACAC 59.587 61.111 15.69 0.00 42.88 3.82
348 349 2.832661 GGCTGTGCACCCAACACA 60.833 61.111 15.69 0.00 45.42 3.72
349 350 3.964875 CGGCTGTGCACCCAACAC 61.965 66.667 15.69 0.00 38.55 3.32
359 360 3.264897 GTAGATGCGCCGGCTGTG 61.265 66.667 26.68 10.55 40.82 3.66
360 361 2.796483 TTTGTAGATGCGCCGGCTGT 62.796 55.000 26.68 10.11 40.82 4.40
361 362 1.439353 ATTTGTAGATGCGCCGGCTG 61.439 55.000 26.68 19.05 40.82 4.85
362 363 1.153168 ATTTGTAGATGCGCCGGCT 60.153 52.632 26.68 5.36 40.82 5.52
363 364 1.279840 GATTTGTAGATGCGCCGGC 59.720 57.895 19.07 19.07 40.52 6.13
364 365 1.831389 CGGATTTGTAGATGCGCCGG 61.831 60.000 4.18 0.00 34.23 6.13
365 366 1.564622 CGGATTTGTAGATGCGCCG 59.435 57.895 4.18 0.00 34.23 6.46
366 367 0.531974 TCCGGATTTGTAGATGCGCC 60.532 55.000 4.18 0.00 39.20 6.53
367 368 0.582005 GTCCGGATTTGTAGATGCGC 59.418 55.000 7.81 0.00 39.20 6.09
368 369 1.860950 CTGTCCGGATTTGTAGATGCG 59.139 52.381 7.81 0.00 40.06 4.73
369 370 2.213499 CCTGTCCGGATTTGTAGATGC 58.787 52.381 7.81 0.00 33.16 3.91
370 371 2.213499 GCCTGTCCGGATTTGTAGATG 58.787 52.381 7.81 0.00 33.16 2.90
371 372 1.837439 TGCCTGTCCGGATTTGTAGAT 59.163 47.619 7.81 0.00 33.16 1.98
372 373 1.066430 GTGCCTGTCCGGATTTGTAGA 60.066 52.381 7.81 0.00 33.16 2.59
373 374 1.369625 GTGCCTGTCCGGATTTGTAG 58.630 55.000 7.81 1.45 33.16 2.74
374 375 0.390603 CGTGCCTGTCCGGATTTGTA 60.391 55.000 7.81 0.00 33.16 2.41
375 376 1.671054 CGTGCCTGTCCGGATTTGT 60.671 57.895 7.81 0.00 33.16 2.83
376 377 0.744414 ATCGTGCCTGTCCGGATTTG 60.744 55.000 7.81 0.00 33.16 2.32
377 378 0.035439 AATCGTGCCTGTCCGGATTT 60.035 50.000 7.81 0.00 33.16 2.17
378 379 0.462047 GAATCGTGCCTGTCCGGATT 60.462 55.000 7.81 0.00 33.16 3.01
379 380 1.144057 GAATCGTGCCTGTCCGGAT 59.856 57.895 7.81 0.00 33.16 4.18
380 381 2.577059 GAATCGTGCCTGTCCGGA 59.423 61.111 0.00 0.00 33.16 5.14
381 382 2.511600 GGAATCGTGCCTGTCCGG 60.512 66.667 0.00 0.00 0.00 5.14
382 383 0.744414 AATGGAATCGTGCCTGTCCG 60.744 55.000 0.00 0.00 32.45 4.79
383 384 2.325583 TAATGGAATCGTGCCTGTCC 57.674 50.000 0.00 0.00 0.00 4.02
384 385 3.466836 TGATAATGGAATCGTGCCTGTC 58.533 45.455 0.00 0.00 0.00 3.51
385 386 3.558931 TGATAATGGAATCGTGCCTGT 57.441 42.857 0.00 0.00 0.00 4.00
386 387 4.321718 AGATGATAATGGAATCGTGCCTG 58.678 43.478 0.00 0.00 0.00 4.85
387 388 4.630644 AGATGATAATGGAATCGTGCCT 57.369 40.909 0.00 0.00 0.00 4.75
388 389 5.695851 AAAGATGATAATGGAATCGTGCC 57.304 39.130 0.00 0.00 0.00 5.01
411 412 8.484008 CGTTTCATCCGTTTTTCATTTGTTTAT 58.516 29.630 0.00 0.00 0.00 1.40
412 413 7.488471 ACGTTTCATCCGTTTTTCATTTGTTTA 59.512 29.630 0.00 0.00 34.28 2.01
413 414 6.311690 ACGTTTCATCCGTTTTTCATTTGTTT 59.688 30.769 0.00 0.00 34.28 2.83
414 415 5.808030 ACGTTTCATCCGTTTTTCATTTGTT 59.192 32.000 0.00 0.00 34.28 2.83
415 416 5.344884 ACGTTTCATCCGTTTTTCATTTGT 58.655 33.333 0.00 0.00 34.28 2.83
416 417 5.881637 ACGTTTCATCCGTTTTTCATTTG 57.118 34.783 0.00 0.00 34.28 2.32
417 418 5.233263 CCAACGTTTCATCCGTTTTTCATTT 59.767 36.000 0.00 0.00 45.46 2.32
418 419 4.742659 CCAACGTTTCATCCGTTTTTCATT 59.257 37.500 0.00 0.00 45.46 2.57
419 420 4.202070 ACCAACGTTTCATCCGTTTTTCAT 60.202 37.500 0.00 0.00 45.46 2.57
420 421 3.128938 ACCAACGTTTCATCCGTTTTTCA 59.871 39.130 0.00 0.00 45.46 2.69
421 422 3.697982 ACCAACGTTTCATCCGTTTTTC 58.302 40.909 0.00 0.00 45.46 2.29
422 423 3.786516 ACCAACGTTTCATCCGTTTTT 57.213 38.095 0.00 0.00 45.46 1.94
423 424 3.786516 AACCAACGTTTCATCCGTTTT 57.213 38.095 0.00 0.00 45.46 2.43
424 425 3.440228 CAAACCAACGTTTCATCCGTTT 58.560 40.909 0.00 0.00 45.46 3.60
426 427 1.335496 CCAAACCAACGTTTCATCCGT 59.665 47.619 0.00 0.00 40.28 4.69
427 428 1.604755 TCCAAACCAACGTTTCATCCG 59.395 47.619 0.00 0.00 40.28 4.18
428 429 3.669557 CGATCCAAACCAACGTTTCATCC 60.670 47.826 0.00 0.00 40.28 3.51
429 430 3.058501 ACGATCCAAACCAACGTTTCATC 60.059 43.478 0.00 0.00 40.28 2.92
430 431 2.882137 ACGATCCAAACCAACGTTTCAT 59.118 40.909 0.00 0.00 40.28 2.57
431 432 2.032302 CACGATCCAAACCAACGTTTCA 59.968 45.455 0.00 0.00 40.28 2.69
432 433 2.646250 CACGATCCAAACCAACGTTTC 58.354 47.619 0.00 0.00 40.28 2.78
433 434 1.268845 GCACGATCCAAACCAACGTTT 60.269 47.619 0.00 0.00 43.09 3.60
434 435 0.309612 GCACGATCCAAACCAACGTT 59.690 50.000 0.00 0.00 35.05 3.99
435 436 1.512156 GGCACGATCCAAACCAACGT 61.512 55.000 0.00 0.00 37.68 3.99
436 437 1.209127 GGCACGATCCAAACCAACG 59.791 57.895 0.00 0.00 0.00 4.10
437 438 0.240945 CAGGCACGATCCAAACCAAC 59.759 55.000 0.00 0.00 0.00 3.77
438 439 1.523154 GCAGGCACGATCCAAACCAA 61.523 55.000 0.00 0.00 0.00 3.67
439 440 1.971167 GCAGGCACGATCCAAACCA 60.971 57.895 0.00 0.00 0.00 3.67
440 441 2.700773 GGCAGGCACGATCCAAACC 61.701 63.158 0.00 0.00 0.00 3.27
441 442 1.971167 TGGCAGGCACGATCCAAAC 60.971 57.895 0.00 0.00 0.00 2.93
442 443 1.971167 GTGGCAGGCACGATCCAAA 60.971 57.895 11.99 0.00 0.00 3.28
443 444 2.359850 GTGGCAGGCACGATCCAA 60.360 61.111 11.99 0.00 0.00 3.53
444 445 3.321648 AGTGGCAGGCACGATCCA 61.322 61.111 20.68 0.00 0.00 3.41
445 446 2.821366 CAGTGGCAGGCACGATCC 60.821 66.667 20.68 0.00 0.00 3.36
446 447 3.503363 GCAGTGGCAGGCACGATC 61.503 66.667 20.68 10.42 40.72 3.69
451 452 4.289101 ATGTGGCAGTGGCAGGCA 62.289 61.111 21.25 15.81 43.71 4.75
452 453 3.755628 CATGTGGCAGTGGCAGGC 61.756 66.667 21.25 10.05 43.71 4.85
453 454 3.066190 CCATGTGGCAGTGGCAGG 61.066 66.667 21.25 14.25 43.71 4.85
454 455 1.904865 AACCATGTGGCAGTGGCAG 60.905 57.895 21.25 10.87 43.71 4.85
455 456 2.198150 AACCATGTGGCAGTGGCA 59.802 55.556 16.56 16.56 43.71 4.92
456 457 2.146073 GACAACCATGTGGCAGTGGC 62.146 60.000 16.50 10.30 40.74 5.01
457 458 1.855213 CGACAACCATGTGGCAGTGG 61.855 60.000 15.32 15.32 40.74 4.00
458 459 0.884259 TCGACAACCATGTGGCAGTG 60.884 55.000 0.00 0.00 40.74 3.66
459 460 0.036732 ATCGACAACCATGTGGCAGT 59.963 50.000 0.00 0.00 40.74 4.40
463 464 4.214119 GGATGATTATCGACAACCATGTGG 59.786 45.833 0.00 0.00 40.74 4.17
476 477 4.918583 GGACTCGAACTTCGGATGATTATC 59.081 45.833 11.21 0.00 40.88 1.75
478 479 3.952323 AGGACTCGAACTTCGGATGATTA 59.048 43.478 11.21 0.00 40.88 1.75
493 494 3.125573 TCCTCGCGTCAGGACTCG 61.126 66.667 12.23 5.52 37.68 4.18
499 500 3.384014 GAGTCCGTCCTCGCGTCAG 62.384 68.421 5.77 0.00 35.54 3.51
501 502 3.126225 AGAGTCCGTCCTCGCGTC 61.126 66.667 5.77 0.00 36.56 5.19
513 514 2.667137 CCTCGTCAAAGTGTCAGAGTC 58.333 52.381 0.00 0.00 0.00 3.36
514 515 1.269831 GCCTCGTCAAAGTGTCAGAGT 60.270 52.381 0.00 0.00 0.00 3.24
517 518 1.891060 GCGCCTCGTCAAAGTGTCAG 61.891 60.000 0.00 0.00 0.00 3.51
523 524 3.479269 GGTCGCGCCTCGTCAAAG 61.479 66.667 0.00 0.00 39.67 2.77
555 556 0.744414 CATGTGCTTCGGTGTAGGGG 60.744 60.000 0.00 0.00 0.00 4.79
556 557 0.744414 CCATGTGCTTCGGTGTAGGG 60.744 60.000 0.00 0.00 0.00 3.53
764 784 1.221021 GACGGCGAGGGGATTTTCT 59.779 57.895 16.62 0.00 0.00 2.52
843 866 6.367374 TCTAATGATCCTGGTGTGTGTTTA 57.633 37.500 0.00 0.00 0.00 2.01
1403 1438 1.594833 GGGTACACGGTCTGCATGA 59.405 57.895 0.00 0.00 0.00 3.07
1497 1532 2.425592 CCGGTCTTGGTGCTGACA 59.574 61.111 0.00 0.00 35.11 3.58
1632 1673 1.377333 GGTGTAGTGCAGGGCCTTC 60.377 63.158 1.32 0.00 0.00 3.46
1716 1757 4.067512 TCCGCCCTGAGCTCCTCT 62.068 66.667 12.15 0.00 40.39 3.69
1773 1814 2.031516 GTCGTCCTCGTCGTCCTCA 61.032 63.158 0.00 0.00 38.33 3.86
1822 1863 4.376615 GCAATGCAATGCAGTAAACTTGTG 60.377 41.667 21.74 0.00 43.65 3.33
1905 1947 2.113777 CCTCCCCTACCACCTATACCAT 59.886 54.545 0.00 0.00 0.00 3.55
1977 2021 4.448732 TGGTTCATTCATAGATCGATTGCG 59.551 41.667 0.00 0.00 39.35 4.85
2012 2056 5.629125 GAGGCCAAAGGATGATAATCTCTT 58.371 41.667 5.01 0.00 0.00 2.85
2014 2058 3.999663 CGAGGCCAAAGGATGATAATCTC 59.000 47.826 5.01 0.00 0.00 2.75
2015 2059 3.808618 GCGAGGCCAAAGGATGATAATCT 60.809 47.826 5.01 0.00 0.00 2.40
2016 2060 2.485814 GCGAGGCCAAAGGATGATAATC 59.514 50.000 5.01 0.00 0.00 1.75
2017 2061 2.508526 GCGAGGCCAAAGGATGATAAT 58.491 47.619 5.01 0.00 0.00 1.28
2018 2062 1.810031 CGCGAGGCCAAAGGATGATAA 60.810 52.381 5.01 0.00 0.00 1.75
2020 2064 1.524621 CGCGAGGCCAAAGGATGAT 60.525 57.895 5.01 0.00 0.00 2.45
2022 2066 3.880846 GCGCGAGGCCAAAGGATG 61.881 66.667 12.10 0.00 34.80 3.51
2035 2079 3.782244 GCAGAACTGACAGGCGCG 61.782 66.667 0.00 0.00 0.00 6.86
2092 2137 0.106819 ACATCAGCCAGCCAAGGATC 60.107 55.000 0.00 0.00 0.00 3.36
2144 2194 2.039084 AGGGCGGAATAAGATGATCACC 59.961 50.000 0.00 0.00 0.00 4.02
2192 2242 2.914097 AACCCTGCCTGCAACTGC 60.914 61.111 0.00 0.00 42.50 4.40
2193 2243 1.829533 ACAACCCTGCCTGCAACTG 60.830 57.895 0.00 0.00 0.00 3.16
2194 2244 1.829533 CACAACCCTGCCTGCAACT 60.830 57.895 0.00 0.00 0.00 3.16
2195 2245 2.730094 CACAACCCTGCCTGCAAC 59.270 61.111 0.00 0.00 0.00 4.17
2196 2246 3.225798 GCACAACCCTGCCTGCAA 61.226 61.111 0.00 0.00 0.00 4.08
2197 2247 4.208403 AGCACAACCCTGCCTGCA 62.208 61.111 0.00 0.00 37.96 4.41
2213 2264 4.264253 TCATCTGCTAACCAAATGACCAG 58.736 43.478 0.00 0.00 0.00 4.00
2229 2280 3.863424 GCAGTGCCATGAAATTTCATCTG 59.137 43.478 27.43 27.43 45.62 2.90
2287 2338 1.880819 AAGCCAGCCATTTTGCCGAG 61.881 55.000 0.00 0.00 0.00 4.63
2288 2339 1.876497 GAAGCCAGCCATTTTGCCGA 61.876 55.000 0.00 0.00 0.00 5.54
2303 2354 1.528129 CTCCCAGGAACACAAGAAGC 58.472 55.000 0.00 0.00 0.00 3.86
2330 2381 2.289002 CCAACACAAGACTCTCACAAGC 59.711 50.000 0.00 0.00 0.00 4.01
2364 2415 1.808411 TTGCATCTCCTGAACCGAAC 58.192 50.000 0.00 0.00 0.00 3.95
2410 2461 1.269051 GCCCAGGAACACAAAGAAACG 60.269 52.381 0.00 0.00 0.00 3.60
2446 2497 0.036732 CCAAGGAACACAGGCAGCTA 59.963 55.000 0.00 0.00 0.00 3.32
2447 2498 1.228367 CCAAGGAACACAGGCAGCT 60.228 57.895 0.00 0.00 0.00 4.24
2448 2499 2.924105 GCCAAGGAACACAGGCAGC 61.924 63.158 0.00 0.00 46.26 5.25
2593 2654 3.914312 AGATTACAGACACAAGGACACG 58.086 45.455 0.00 0.00 0.00 4.49
2604 2665 4.413087 ACACGTGATTCGAGATTACAGAC 58.587 43.478 25.01 0.00 42.86 3.51
2706 2767 3.057547 CTCCAGCTCCAGACGTCCG 62.058 68.421 13.01 0.70 0.00 4.79
2713 2774 2.230994 TTAGCGTGCTCCAGCTCCAG 62.231 60.000 0.00 0.00 43.44 3.86
2732 2793 0.751643 GCCCAAAGGTATGCGTCCAT 60.752 55.000 0.00 0.00 34.57 3.41
2733 2794 1.377987 GCCCAAAGGTATGCGTCCA 60.378 57.895 0.00 0.00 34.57 4.02
2734 2795 0.963355 TTGCCCAAAGGTATGCGTCC 60.963 55.000 0.00 0.00 34.57 4.79
2735 2796 0.170339 GTTGCCCAAAGGTATGCGTC 59.830 55.000 0.00 0.00 34.57 5.19
2736 2797 0.538516 TGTTGCCCAAAGGTATGCGT 60.539 50.000 0.00 0.00 34.57 5.24
2754 2815 4.391216 GTCACAGACAGACATTGGATTCTG 59.609 45.833 2.20 2.20 44.19 3.02
2775 2836 1.227853 AAACGGGTGAGCAGTGGTC 60.228 57.895 15.47 15.47 0.00 4.02
2779 2840 0.107410 TTGTCAAACGGGTGAGCAGT 60.107 50.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.