>input_sequence_68350
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--------------------------------------------------------------------------ATGACG
GTGCCGCCGTCGCCGGAGCCGTTCCGCGTCTTCGTCGGGTACGACCCGAAGGAGCACGAGGCGTACGAGGTGTGCCGCCG
CAGCCTGATCCGCCACGCCACCGTGCCGCTCGACGTGCGCCCCATCCGGCAGCCGGACCTGCGCGCGTCGGGCCTCTACT
GGCGCACGCGGGGCCACATGGAGAGCACCGAGTTCTCCTTCACCCGCTTCCTCACCCCCTTCCTCGCCGGCTACCGCGGC
TGGGCGCTCTTCATCGACTGCGACTTCCTCTACCTCGCCGACGTCGCCGAGCTCATCGCCTCCGCCGTGCCCTCCGACGC
CGCCGCCGCAAAGCGCCTCGCCGTCGTCTGCGTCAAGCACGAGTACACGCCCCTCGAGGCCACCAAGATGGACGGCGTCA
TGCAGACCGTGTACCCGCGCAAGAACTGGTCCTCCATGGTGCTCTACAACTGCGCCCACCCCAAGAACGTCGCCGCGCTC
ACCCCGGATGCTGTCAGCACCAAGACCGGCGCCTTCCTCCACCGATTCTCCTGGCTCGACGACGACGAGATCGGGGAGGT
GCCCTTCGTCTGGAACTTCCTCGTCGGCCACAACAAGGTCGACCCT------GACGACCCGACCACGCAGCCGAAGGCCC
TGCACTACACCTGCGGGGGACCCTGGTTCGACAGGTACAGGGACTGCGAGTTCGCCGACCTCTGGATCAAGGAGGCAGAG
GAGCTCAGGGCGGAGAAGGAGAAGCGCAGGGCCGAGAAGGAGAGGCTCGAGCTTGAGGACGACGAGGACGACGAGGGGAA
TTGA----------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G162300
AGAGCGCAATTTAATAGATGTTCGTGCACTTGTTGCTAGAATAGAGGTTAGAGATGAGACTAGATGCGGAGAAACAACGT
CTAATTCTTTAGACTCGAAAAAAAAAGAAGCACGCAAGATCGAGCCTTCGCAGATCAATAATGAACGCATCGAGAAGGCA
CTAATCCAACTTACAGGAGCAGTTATGAAAGTTGGATATTTTCTAAAATATCTTCATGTGGTTCTTATTTCCTTTGGTCA
TGCTATTCTAGGCAAGATTTGATGATGTTCTTCAATGTATCAAAAATCAATGATGAAAATAAATATATATCTTGTAAAAA
CAAAATGTATGCGGACAATATGCCGCCGTGTGTTGGGTGCACAGCCGGCGCATCTACAAATCCGGACAGGCACGATTCCA
TTATCATCTTTATAAACAAATGAAAAACGGATGAAACGTTGGTTTGGATCGTGCCTGCCACTGCCACATGGTTGTCGATA
ATCATCCGAAGTTCGAGTCCTGACGCGAGGACGGACTCTGACACTTTGACGAGGCGCGACCACAGCACGCGACACCCCCT
ACACCGAAGCACATGGGCGTCCAGTGACCCCCGGCCCACGCCGCAGGCCGCGGACACCCCCT------------GATTTC
CACGCGGCGACCGCGTTCCCGCCCGTGCCGTGGCCGTGGCCGTGCCGCATCCACGCCGCCTCGCCACCGACATCCTCTTC
CCCGCGGCCGCTGCTCCCGGCGTTACCCAGCTGTCAATCCCCCACCGACGAC-------GAAAAGAAAATCCCCTCGCC-
-GTCTCACTGCCACACGGGCCCCGCTC-CCTGGCCCAACCTGTCAGTCCCTCGTGTCGCCAAAGCTAAACACACACCAGG
ATCATTAGATTCGAAACAGATCTCAAGATCACCT-CCCCCGTTTGCCATCTTTAGTAC-TTTCAGCCCCACCTCGCCTCC
CTCCAT----------TAAAGCCCGCGCCCTCCTCCTCCGCTCCATTCCCCTCGCCACCGCCCAGATCCAGACCATGACG
GTGCCGCCGTCGCCGGAGCCGTTCCGCGTCTTCGTCGGGTACGACCCGAAGGAGCACGAGGCGTACGAGGTGTGCCGCCG
CAGCCTGATCCGCCACGCCACCGTGCCGCTCGACGTGCGCCCCATCCGGCAGCCGGACCTGCGCGCGTCGGGCCTCTACT
GGCGCACGCGGGGCCACATGGAGAGCACCGAGTTCTCCTTCACCCGCTTCCTCACCCCCTTCCTCGCCGGCTACCGCGGC
TGGGCGCTCTTCATCGACTGCGACTTCCTCTACCTCGCCGACGTCGCCGAGCTCATCGCCTCCGCCGTGCCCTCCGACGC
CGCCGCCGCAAAGCGCCTCGCCGTCGTCTGCGTCAAGCACGAGTACACGCCCCTCGAGGCCACCAAGATGGACGGCGTCA
TGCAGACCGTGTACCCGCGCAAGAACTGGTCCTCCATGGTGCTCTACAACTGCGCCCACCCCAAGAACGTCGCCGCGCTC
ACCCCGGATGCTGTCAGCACCAAGACCGGCGCCTTCCTCCACCGATTCTCCTGGCTCGACGACGACGAGATCGGGGAGGT
GCCCTTCGTCTGGAACTTCCTCGTCGGCCACAACAAGGTCGACCCT------GACGACCCGACCACGCAGCCGAAGGCCC
TGCACTACACCTGCGGGGGACCCTGGTTCGACAGGTACAGGGACTGCGAGTTCGCCGACCTCTGGATCAAGGAGGCAGAG
GAGCTCAGGGCGGAGAAGGAGAAGCGCAGGGCCGAGAAGGAGAGGCTCGAGCTTGAGGACGACGAGGACGACGAGGGGAA
TTGATGGGTGATGGGGCCGGCCCACAAGT-TTACTGCATTGCATTGCATTGGTTCTTTTGCGCCGTGGGAATTCTTTCGA
TTCAATCTGTTTGTTATGCTGGTTTCATGGTATAGGTGGTAGGGGAGGCCATGGGTAGATAGCTCGAGTATATTGG--TA
GTATGCTCTTGTGTAGTAGTCGCAATCGATCTATGAATGAACCAGTCCTCATTGCAAGAGATTATCATCCTTTGGCCTCG
CGCCTGTCAGTTCTGCTGCTCTTG-TTTCTGATCGCACCATGCTTGCTGAATTAATGATCCTTGGCTGGCTGATGT----
-TGGAACGAATGAGCAATCTGGCTGGCAGGAAAGGTGATCATCTTATTCCGCCCTATTGCTGAAAACGATGTCATCTGTT
TGCAGTTGC-AGGCAGGGTTGTGCTGGTCATTTGGTTAGCAGATGAAATTTCATGGCACTGCAGCAGAATGGCTGGCTTC
TTTGTGTTCCTTGGCACCTCGGCAAAATGGCTGGCTTCTTGTGTTCCTGGGAGCTGGGAGGCTTGTGAGAGTCTTGTGTT
GGTCTTTTGGTTCAGTTCGGTTCAGGAGATGCAATTTCATGGCACTGCAGCAAAATGGCTCGTTTCTTTGTGTTCCTGGG
CACTGCAGCCAGATGGTAG-----CTGCCTGTGTTCCTTGGCACTTG-AGGCTGTGAATGTCCCTGGATAGATGATGACT
CTGCAGAGA----CCACTTGTTTAATGTTTTGCTTCAACTAAACAAACTCTGATGACAGATGCATGTTCTTGGCGCTGGA
CCAGACAGGGAGACGTGTCCTTGTGTCTGTAATCTCGAATCACGTGTTAACAATGGAGTACTAGGTTGATCACAACCAAT
CGTTCTAGACTTCTAGTTCTACCCTGGACCCATCAGTGGTGGACCGCGGACGTCTGGAGCTGGAGCACGCTAATGGACGC
ATACCTTTGGGCAACAGAATCCAATGTCTGTCTGTGACCACTGCTCACCCGTTTGACAAATCGA
>chr1A_461
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------------------------------------------------------------CTGTCACATGGTTGTCAACA
ATCATCCGAAGTTGGAGTCTTCACGCGAGGACGCGCTTTGACAGTTTGACGAGGCGTGACCATAGCACGCGACACG-CCT
ACACCGAAGCACATGGCCGTCCAGTGACCCCCGGCCCACGCCGCAGGCTGCGGACTCCCGCGACCACCTCCTGAGATTTC
CACGCGACGGCCGCGTTCCCGCCCGTGCCGTGC-----------------CCACGCCGCCTCGCCACCGACATCCTCTTC
CCCGCGGCCGCTGCTCCCGGCGTTACCCAGCTGTCAACCCCCCACCGAGGCACCGACGAGAAAGGAAAATCCCCTCGCC-
-GTCTCACTGCCCCACGGGCCCCGCTTTCCTGGCCCAACCTGTCAGTCCCTCCCGTCGCCAAAGCCAAACACACACCAGG
ATCATTAGATTCGAAACAGATCTCAAGATCACCTCCCCCCGTTTGCCATCTTTAGTTAGTTTCAGCCCCACCTCGCCTCC
CTCCAT----------TAAAGCCCGCGCCCTCCTCCTCCGCTCCATTCCCCTCGCCACCGCCCAGATCCAGACCATGACG
GTGCCGCCGTCGCCGGAGCCGTTCCGCGTCTTCGTCGGGTACGACCCGAAGGAGCACGAGGCGTACGAGGTGTGCCGCCG
CAGCCTGATCCGCCACGCCACCGTGCCGCTCGACGTGCGCCCCATCCGGCAGCCGGACCTGCGCGCGTCGGGCCTCTACT
GGCGCACGCGGGGCCACATGGAGAGCACCGAGTTCTCCTTCACCCGCTTCCTCACCCCCTTCCTCGCCGGCTACCGCGGC
TGGGCGCTCTTCATCGACTGCGACTTCCTCTACCTCGCCGACGTCGCCGAGCTCATCGCCTCCGCCGTGCCCTCGGACGC
CGCCGCCGCCAAGCGCCTCGCCGTCGTCTGCGTCAAGCACGAGTACGCGCCCCTCGAGACCACCAAGATGGACGGCGCCA
TGCAGACCGTGTACCCGCGCAAGAACTGGTCCTCCATGGTGCTCTACAACTGCGCCCACCCCAAGAACGTCGCCACGCTC
ACCCCGGACGCCGTCAGCACCAAGACCGGCGCCTTCCTCCACCGATTCTCCTGGCTCGAAGACGACGAGATCGGGGAGGT
GCCCTTCGTCTGGAACTTCCTCGTCGGCCACAACAAGGTCGACCCT------GACGACCCGACCACGAAGCCCAAGGCCC
TGCACTACACCTGCGGGGGACCCTGGTTCGACAGGTACAGGGACTGCGAGTTCGCCGACCTCTGGATCAAGGAGGCCGAG
GAGCTCAGGGCGGAGAAGGAGAAGCGCAAGGCCGAGAAGGAGAGGCTCGAGCTCGAGGACGACGAGGACGACGAGGGGAA
TTGATGGATGATGGGGCCGGCCAACAAGTTTTACTGCATTGCATTGCATTGGTCCTTTTGCGCCGTGGGAATTCTTTCGA
TTCAATCTGTTTGTTATGCTGGTTTCTTGGTATAGGTGGTAGGGGAGGCCATGAGTAGATAGCTCGAGTATATTGGTTTA
GTATGCTCTTGTGTAGTAGCTGCAATCGATCTATGAATGAACCAGTCCTCATTGCCAAGAGATTTTATCCTTTGGCCTTG
CGCCTATCAGTTCTGCTTCTCTTG-TTCTGATCA-CACAATGCTTACTGAATTAATAATCCTTGGCTGGCTGATGT----
-TGGACTGA--------------------GAAATCTGATTATCTTGTTCCGCCCTATTGCTGAAAACGATGGTGGGCAAA
TTGGTCCCGAATTCAGGGTTGCGTAGGTTTTTTGGTTCAGGA------------------GCACCAGAATGGCTGGCTTC
TTTGTGTTCCTTGGTGCTCGGAGGCTGGGATCCA----------------------------------------TGTGTT
GGTCTTTTGGTTCATTTCGGTTCAGGAGATAAAATCTCATGGCACTGCAGCAAAATGGTTGGTTTCTTTGCGTTCCTGGG
CACTGAAACAAAATGGCTAGCTCCTATA--GTGTTCCTTGGCACTTGGAGGCTGGGAATGTCCCTGGATAGATA---ACT
CTGCAGAGGCCAGCCACTTCTTTACTGTTTTGCTTGAACTAAACAAACTCCCATGACAGATGCATGTTCTTGGCGCTGGA
CCAGACAG--AGATGTGTCCTTGTCTCTGCAATCTCAAATCACATGTTAACAATGGAGTACTAGGTTGAACACAACCATT
CGTTGATCG-TTCTAGTTCTACTCTAGACTCATCAGTGGTGGGCCGTGGGCGTGTGGAACTGGAGCAC------------
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>chr1B_612
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---------------------------------------------------GGACACCTCCT------------GATTTC
CACGCGGCGACCGCGTTCCCGCCCGTGCCGTG------GCCGTGCCGCATCCACGCCGCCTCGCCACCGACATCCTCTTC
CCCGCGGCCGGTGCTCCCGGCGTTACCCAGCTGTCAATCCCCCACCGACGAC-------GAAAGGAAAATCCCCTCTCTC
TGTCTCACTGCCTCACGGGCCCCGCTC-CCTGGCCCAACCTGTCAGTCCCTCGTGTCT------CCAAACACACACCAGG
ATCATTAGATTCGAAACAGATCTCAAGATCACCTCCCCCCGTTTGCCATCTTTAGTAC-TTTCAGCCCCACCTCGCCTCC
CTCCATCCCCCTCCATTAAAGCCCGCGCCCTCCTCCTCCGCTCCATTCCCCTCGCCACCGCCCAGATCCAGACCATGACG
GTGCCGCCGTCGCCGGAGCCGTTCCGCGTCTTCGTCGGGTACGACCCGAAGGAGCACGAGGCCTACGAGGTGTGTCGCCG
CAGCCTGATCCGCCACGCCACCGTGCCGCTCGACGTGCGCCCCATCCGGCAGCCGGACCTCCGCGCGTCGGGGCTCTACT
GGCGCACGCGGGGTCACATGGAGAGCACTGAGTTCTCCTTCACCCGCTTCCTCACCCCCTTCCTCGCCGGCTACCGCGGC
TGGGCGCTCTTCATCGACTGCGACTTCCTCTACCTCGCCGACGTCGCCGAGCTCATCGCCTCCGCCGTGCCCTCGGACGC
TGCCGCCGCCAAGCGCCTCGCCGTCGTCTGCGTCAAGCACGAGTACAAGCCCCTCGAGGCCACCAAGATGGACGGCGCCA
TGCAGACCGTGTACCCGCGCAAGAACTGGTCCTCCATGGTGCTCTACAACTGCGCCCACCCCAAGAACGTCGCCGCGCTC
ACCCCGGACGCCGTCAGCACCAAGACCGGCGCCTTCCTCCACCGATTCTCCTGGCTCGACGACGACGAGATCGGGGAGGT
GCCCTTCGTCTGGAACTTCCTCGTCGGCCACAACAGGGTCGACCCT------GACGACCCGGCCACGCAGCCCAAGGCCC
TGCACTACACCTGCGGGGGACCCTGGTTCGACAGGTACAGGGACTGCGAGTTCGCCGACCTCTGGATCAAGGAGGCCGAG
GAGCTCAGGGCGGAGAAGGAGAAGCGCAGAGCCGAGAAGGAGAGGCTCGAGCTCGAGGACGACGAGGACGACGAGGGGAA
TTGATGGATGATGGGGCCGGCCAACAAGTT------CACTGCATTGCATTGGTTCTTTTGCGCCGTGGGAATTCTTTCGA
TTCAATCTGTTTGTTATGCTGGTTTCTTGGTATAGGTGGTAGGGGAGGCCAGAGTAGAATAGCTCGAGTATATTGGTTTA
GTATGCTCTTGTGTGGTAGCTGCAATCGATCTATGAATGAACCAGTCCTCATTGCCAAGAGATTTTATCCTTTGGCCTTG
CCCCTATCAGTTCTGCTGCTCTTGTTTCTGATCA-CACCATACTTGCTGAATTAATAATCCTTGGCTAGCTGATGTGATG
CTGGAACGAATGAGCAATCTGGCTGGCAGGAAATGTGATCATCTTATTCCGCCCTATTGCTGAAAACGATGTCATCTGTT
T------GC-AGGCAGGGTTGTGTTGGTCATTTGGTTAGTAGATGAAATTTCATGGCACCGCAGCAGAATGGCTGGCTTC
TTTGTGTTCCTTGGCACTGCAGCAAAATGGCTGTCTTCTTGTGTTCCTGGGGGCTGGGAGTCTTGTGAGAGTCTTGTGTT
GGTCTTTTGGTTCATTTCGGTTCAGGAGATGCAATTTCATGGCACTGCAGCAAAATGGCTGGTTTCTTTGTGTTCCTGGG
CACTGCAGCCAGATGGCTAGCTGCCTGCCTGTGTTCCTTGGCACTTG-AGGCTGTGAATGTCCCTGGATAGATGATGACT
CTGCAGAGA----CCACTTCTTTAATGTTTTGCTTCAACTAAGCAAACTCTGATGACAGATGCATGTTCTTGGCGCTGGA
CCAGACAGGGAGA------------TCTGTACTCTCGAATCACGTGTTAACAATGGAGTACTAGGTTGATCACAACCAAT
CGTTCTAGACTTCTAGCTCTACCCTGGACCCATCAGTGGTGGACCGTGGACGTGTGGAGCTGGAGCACGCTA-----CGC
ATACCTTTGGGCTAGAGAATCCAATGTCTGTATGTAACCGCTGCTCACCTGTTTGACAAATC--
>chr7B_1097
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----------CGCCGCTCCTCCGTGCCGCTGGAGGTCATCCCGATCGTCCAGCAGGAGCTCCGCGAGGCTGGGCTGTACT
GGCGGGAGCGCGGGCCGACGGAGAGCACAGAGTTCTCCTTCACCCGCTTCCTGACGCCGCACCTCGCCGGCTACCGTGGC
TGGGCGCTCTTCGTGGACTGCGACTTCCTCTTCGTCGCCGACGTGGCAGAGCTGGCGCGCATGGCCGACCCT--------
-------------CGCTACGCCGTGCTGTGCGTGCACCACGACTACACGCCCAAGGAGGCCACCAAGATGGACGGCGCCG
TGCAGACGGTGTACCCCCGCAAGAACTGGTCCTCCATGGTGCTCTTCAACTGCGGCCACCCCAAGAACCGCGCTTCGCTC
ACGCCGGAGGCCGTGAGCACCCAGAGCGGAGCGCACCTCCACCGATTCGCGTGGCTTGACGACGCCGATGTCGGCGAGGT
GCCATTCGCGTGGAACTTCCTCGTGGGGCACAACCGCGTCGACCCGGCGGACGTCGACGGGACCACGCCGCGC---GCCA
TACACTACACGTCCGGCGGGCCGTGGTTCGAGCGGTACAAGGACTGCGAGTTCGCCGACCTCTGGGTCCAGGAG------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------------S-S-
-------------S-----S-S-----------SS--S-----S------------S-----S------------SS---
----------------S-------------------------------S-------------------------------
--------------------------------SSSSSS------------------------------------------
---------------------------------------------------------------S----------------
------------S----------------------------------------------------S--------------
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--------------------------------------------------------------------------S-----
---------S-------------------------------------------------------------------S--
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--------S--S--------------------------------------------------------------------
------------------------------------------------------------------------S-------
----------------------------------------------------------------------------S---
-----------------------------------------------------S--------------------------
-------S--------------S---------------------------------------------------------
--------------------------S-----------------------------------------------------
-------------------SS----------------------------------S-SSSSS-S-S------------S-
-----S---------------------SSSSSSSS---------------------S-----------------------
---------------------------------S----------------------------------------------
-SSSSSS----------------S---------------S-------------------S--------------------
-----------------SS--------------S-----------------S--------S-------------------
--------------S---------------------------------------------S-------------------
----------------SSS-------------------------------------------------------------
-------------------S------------------------------------------------------------
-------------S----------S-------------------------------------------------------
----------------------------------------------S------S------------------SSSSS---
------------S-S----------------S---S---S---------S------------SS
>forward_137
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-------------------------------------GATCGAGCCTTCGCAGATCA-----------------------
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>reverse_2137
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--------------------------------------------------------GATCCTTGGCTGGCTGATGT----
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