Multiple sequence alignment - TraesCS1D01G157500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G157500 chr1D 100.000 4160 0 0 1 4160 222014879 222019038 0.000000e+00 7683.0
1 TraesCS1D01G157500 chr1D 88.235 85 10 0 1961 2045 228806409 228806325 7.360000e-18 102.0
2 TraesCS1D01G157500 chr1A 93.373 4029 139 57 226 4160 287685809 287689803 0.000000e+00 5843.0
3 TraesCS1D01G157500 chr1A 96.154 52 0 2 179 229 287685728 287685778 2.670000e-12 84.2
4 TraesCS1D01G157500 chr1B 97.144 2171 45 6 1998 4160 317586244 317584083 0.000000e+00 3650.0
5 TraesCS1D01G157500 chr1B 87.662 1856 121 44 178 1954 317588069 317586243 0.000000e+00 2060.0
6 TraesCS1D01G157500 chr5A 90.278 72 7 0 1959 2030 569803287 569803216 1.230000e-15 95.3
7 TraesCS1D01G157500 chr5B 93.651 63 3 1 1951 2013 419488117 419488056 4.430000e-15 93.5
8 TraesCS1D01G157500 chr5D 91.045 67 6 0 1959 2025 442502111 442502177 1.590000e-14 91.6
9 TraesCS1D01G157500 chr5D 89.394 66 7 0 1960 2025 259539513 259539448 2.670000e-12 84.2
10 TraesCS1D01G157500 chr7A 89.394 66 7 0 1959 2024 425791999 425791934 2.670000e-12 84.2
11 TraesCS1D01G157500 chr2B 80.412 97 17 1 1947 2041 361575973 361575877 5.770000e-09 73.1
12 TraesCS1D01G157500 chr4D 80.412 97 16 3 1954 2048 484742663 484742758 2.070000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G157500 chr1D 222014879 222019038 4159 False 7683.0 7683 100.0000 1 4160 1 chr1D.!!$F1 4159
1 TraesCS1D01G157500 chr1A 287685728 287689803 4075 False 2963.6 5843 94.7635 179 4160 2 chr1A.!!$F1 3981
2 TraesCS1D01G157500 chr1B 317584083 317588069 3986 True 2855.0 3650 92.4030 178 4160 2 chr1B.!!$R1 3982

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
176 177 0.039437 AAGTGTGCGTAGACCGACAG 60.039 55.0 0.00 0.0 39.56 3.51 F
761 857 0.252012 TTTACAACAGGGCATGGGGG 60.252 55.0 3.46 0.0 0.00 5.40 F
838 936 0.539669 GGGGTGGGAGAACAAACCTG 60.540 60.0 0.00 0.0 33.02 4.00 F
899 998 0.763035 ACCAGTCCACAACCTACCAC 59.237 55.0 0.00 0.0 0.00 4.16 F
1903 2063 0.881796 GTGGTGAGGGCTAAGCAAAC 59.118 55.0 0.00 0.0 0.00 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1880 2040 1.075374 TGCTTAGCCCTCACCACAAAT 59.925 47.619 0.29 0.0 0.0 2.32 R
2550 2710 0.317269 CAAACAGAGCAGCACCAACG 60.317 55.000 0.00 0.0 0.0 4.10 R
2814 2974 1.202290 GGATGCACAGCCCAAAATACG 60.202 52.381 0.00 0.0 0.0 3.06 R
2838 2998 2.355756 CCTGTTCAATATTGCTGGTCCG 59.644 50.000 10.76 0.0 0.0 4.79 R
3902 4079 3.679389 AGGGTGTTGTTGCTAAGATGAG 58.321 45.455 0.00 0.0 0.0 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.552458 TCATATTCATTCGTTGTATGCTTGT 57.448 32.000 0.00 0.00 0.00 3.16
26 27 7.408910 TCATATTCATTCGTTGTATGCTTGTG 58.591 34.615 0.00 0.00 0.00 3.33
27 28 5.878332 ATTCATTCGTTGTATGCTTGTGA 57.122 34.783 0.00 0.00 0.00 3.58
28 29 4.661993 TCATTCGTTGTATGCTTGTGAC 57.338 40.909 0.00 0.00 0.00 3.67
29 30 3.122780 TCATTCGTTGTATGCTTGTGACG 59.877 43.478 0.00 0.00 0.00 4.35
30 31 2.143008 TCGTTGTATGCTTGTGACGT 57.857 45.000 0.00 0.00 32.81 4.34
31 32 3.285816 TCGTTGTATGCTTGTGACGTA 57.714 42.857 0.00 0.00 32.81 3.57
32 33 3.840468 TCGTTGTATGCTTGTGACGTAT 58.160 40.909 0.00 0.00 32.81 3.06
33 34 4.239304 TCGTTGTATGCTTGTGACGTATT 58.761 39.130 0.00 0.00 32.81 1.89
34 35 5.400703 TCGTTGTATGCTTGTGACGTATTA 58.599 37.500 0.00 0.00 32.81 0.98
35 36 5.862860 TCGTTGTATGCTTGTGACGTATTAA 59.137 36.000 0.00 0.00 32.81 1.40
36 37 5.949787 CGTTGTATGCTTGTGACGTATTAAC 59.050 40.000 0.00 0.00 0.00 2.01
60 61 7.452630 CGATCCCGTTTAACAAAAAGAAAAA 57.547 32.000 0.00 0.00 0.00 1.94
61 62 8.067780 CGATCCCGTTTAACAAAAAGAAAAAT 57.932 30.769 0.00 0.00 0.00 1.82
62 63 8.544597 CGATCCCGTTTAACAAAAAGAAAAATT 58.455 29.630 0.00 0.00 0.00 1.82
63 64 9.644993 GATCCCGTTTAACAAAAAGAAAAATTG 57.355 29.630 0.00 0.00 0.00 2.32
64 65 8.773404 TCCCGTTTAACAAAAAGAAAAATTGA 57.227 26.923 0.00 0.00 0.00 2.57
65 66 9.384764 TCCCGTTTAACAAAAAGAAAAATTGAT 57.615 25.926 0.00 0.00 0.00 2.57
66 67 9.995957 CCCGTTTAACAAAAAGAAAAATTGATT 57.004 25.926 0.00 0.00 0.00 2.57
74 75 8.862074 ACAAAAAGAAAAATTGATTTGCAAAGC 58.138 25.926 20.22 20.22 40.48 3.51
75 76 8.861101 CAAAAAGAAAAATTGATTTGCAAAGCA 58.139 25.926 25.24 25.24 40.48 3.91
76 77 8.623310 AAAAGAAAAATTGATTTGCAAAGCAG 57.377 26.923 27.01 0.00 40.61 4.24
77 78 6.930667 AGAAAAATTGATTTGCAAAGCAGT 57.069 29.167 27.01 22.76 40.61 4.40
78 79 6.951643 AGAAAAATTGATTTGCAAAGCAGTC 58.048 32.000 27.01 19.45 40.61 3.51
79 80 6.539464 AGAAAAATTGATTTGCAAAGCAGTCA 59.461 30.769 27.01 17.79 40.61 3.41
80 81 6.870971 AAAATTGATTTGCAAAGCAGTCAT 57.129 29.167 27.01 16.93 40.61 3.06
81 82 6.870971 AAATTGATTTGCAAAGCAGTCATT 57.129 29.167 27.01 21.15 40.61 2.57
82 83 7.966246 AAATTGATTTGCAAAGCAGTCATTA 57.034 28.000 27.01 14.04 40.61 1.90
83 84 7.966246 AATTGATTTGCAAAGCAGTCATTAA 57.034 28.000 27.01 13.35 40.61 1.40
84 85 7.966246 ATTGATTTGCAAAGCAGTCATTAAA 57.034 28.000 27.01 12.65 40.61 1.52
85 86 7.966246 TTGATTTGCAAAGCAGTCATTAAAT 57.034 28.000 27.01 1.49 40.61 1.40
86 87 7.966246 TGATTTGCAAAGCAGTCATTAAATT 57.034 28.000 25.24 0.00 40.61 1.82
87 88 8.380743 TGATTTGCAAAGCAGTCATTAAATTT 57.619 26.923 25.24 0.00 40.61 1.82
88 89 9.486497 TGATTTGCAAAGCAGTCATTAAATTTA 57.514 25.926 25.24 0.00 40.61 1.40
116 117 7.921786 TTTTGGTATCTGTAATGAGTTGGAG 57.078 36.000 0.00 0.00 0.00 3.86
117 118 6.620877 TTGGTATCTGTAATGAGTTGGAGT 57.379 37.500 0.00 0.00 0.00 3.85
118 119 5.977635 TGGTATCTGTAATGAGTTGGAGTG 58.022 41.667 0.00 0.00 0.00 3.51
119 120 5.104941 TGGTATCTGTAATGAGTTGGAGTGG 60.105 44.000 0.00 0.00 0.00 4.00
120 121 5.128827 GGTATCTGTAATGAGTTGGAGTGGA 59.871 44.000 0.00 0.00 0.00 4.02
121 122 4.808414 TCTGTAATGAGTTGGAGTGGAG 57.192 45.455 0.00 0.00 0.00 3.86
122 123 3.515502 TCTGTAATGAGTTGGAGTGGAGG 59.484 47.826 0.00 0.00 0.00 4.30
123 124 2.571653 TGTAATGAGTTGGAGTGGAGGG 59.428 50.000 0.00 0.00 0.00 4.30
124 125 2.044793 AATGAGTTGGAGTGGAGGGA 57.955 50.000 0.00 0.00 0.00 4.20
125 126 1.577736 ATGAGTTGGAGTGGAGGGAG 58.422 55.000 0.00 0.00 0.00 4.30
126 127 0.191064 TGAGTTGGAGTGGAGGGAGT 59.809 55.000 0.00 0.00 0.00 3.85
127 128 1.431633 TGAGTTGGAGTGGAGGGAGTA 59.568 52.381 0.00 0.00 0.00 2.59
128 129 2.104170 GAGTTGGAGTGGAGGGAGTAG 58.896 57.143 0.00 0.00 0.00 2.57
129 130 1.433592 AGTTGGAGTGGAGGGAGTAGT 59.566 52.381 0.00 0.00 0.00 2.73
130 131 2.158143 AGTTGGAGTGGAGGGAGTAGTT 60.158 50.000 0.00 0.00 0.00 2.24
131 132 3.077088 AGTTGGAGTGGAGGGAGTAGTTA 59.923 47.826 0.00 0.00 0.00 2.24
132 133 3.383698 TGGAGTGGAGGGAGTAGTTAG 57.616 52.381 0.00 0.00 0.00 2.34
133 134 2.024273 TGGAGTGGAGGGAGTAGTTAGG 60.024 54.545 0.00 0.00 0.00 2.69
134 135 2.244252 GGAGTGGAGGGAGTAGTTAGGA 59.756 54.545 0.00 0.00 0.00 2.94
135 136 3.309701 GGAGTGGAGGGAGTAGTTAGGAA 60.310 52.174 0.00 0.00 0.00 3.36
136 137 4.351127 GAGTGGAGGGAGTAGTTAGGAAA 58.649 47.826 0.00 0.00 0.00 3.13
137 138 4.961585 AGTGGAGGGAGTAGTTAGGAAAT 58.038 43.478 0.00 0.00 0.00 2.17
138 139 5.351405 AGTGGAGGGAGTAGTTAGGAAATT 58.649 41.667 0.00 0.00 0.00 1.82
139 140 5.791141 AGTGGAGGGAGTAGTTAGGAAATTT 59.209 40.000 0.00 0.00 0.00 1.82
140 141 6.964086 AGTGGAGGGAGTAGTTAGGAAATTTA 59.036 38.462 0.00 0.00 0.00 1.40
141 142 7.046652 GTGGAGGGAGTAGTTAGGAAATTTAC 58.953 42.308 0.00 0.00 0.00 2.01
142 143 6.127253 TGGAGGGAGTAGTTAGGAAATTTACG 60.127 42.308 0.00 0.00 0.00 3.18
143 144 6.127225 GGAGGGAGTAGTTAGGAAATTTACGT 60.127 42.308 0.00 0.00 0.00 3.57
144 145 7.068716 GGAGGGAGTAGTTAGGAAATTTACGTA 59.931 40.741 0.00 0.00 0.00 3.57
145 146 8.366359 AGGGAGTAGTTAGGAAATTTACGTAA 57.634 34.615 3.29 3.29 0.00 3.18
147 148 7.708322 GGGAGTAGTTAGGAAATTTACGTAAGG 59.292 40.741 8.23 0.00 46.39 2.69
148 149 8.253810 GGAGTAGTTAGGAAATTTACGTAAGGT 58.746 37.037 8.23 0.00 46.39 3.50
149 150 8.992835 AGTAGTTAGGAAATTTACGTAAGGTG 57.007 34.615 8.23 0.00 46.39 4.00
150 151 8.037166 AGTAGTTAGGAAATTTACGTAAGGTGG 58.963 37.037 8.23 0.00 46.39 4.61
151 152 7.008021 AGTTAGGAAATTTACGTAAGGTGGA 57.992 36.000 8.23 0.00 46.39 4.02
152 153 7.452562 AGTTAGGAAATTTACGTAAGGTGGAA 58.547 34.615 8.23 0.00 46.39 3.53
153 154 7.938490 AGTTAGGAAATTTACGTAAGGTGGAAA 59.062 33.333 8.23 0.00 46.39 3.13
154 155 6.564709 AGGAAATTTACGTAAGGTGGAAAC 57.435 37.500 8.23 0.00 46.39 2.78
155 156 5.179929 AGGAAATTTACGTAAGGTGGAAACG 59.820 40.000 8.23 0.00 46.39 3.60
172 173 2.633639 CGTAAGTGTGCGTAGACCG 58.366 57.895 0.00 0.00 40.40 4.79
173 174 0.166597 CGTAAGTGTGCGTAGACCGA 59.833 55.000 0.00 0.00 39.56 4.69
174 175 1.611043 GTAAGTGTGCGTAGACCGAC 58.389 55.000 0.00 0.00 39.56 4.79
175 176 1.069022 GTAAGTGTGCGTAGACCGACA 60.069 52.381 0.00 0.00 39.56 4.35
176 177 0.039437 AAGTGTGCGTAGACCGACAG 60.039 55.000 0.00 0.00 39.56 3.51
246 281 1.661821 GCAACAGACGCTCACGAGT 60.662 57.895 0.00 0.00 43.93 4.18
335 372 1.694696 GAGTGACCCAACAGTTCTCCT 59.305 52.381 0.00 0.00 0.00 3.69
501 554 3.485216 GCCGAGTGTGTGCATATAACAAC 60.485 47.826 0.00 0.00 0.00 3.32
553 623 0.595825 GGCACAAGCAGCAACAGAAC 60.596 55.000 0.00 0.00 44.61 3.01
584 657 2.979678 AGGTTTCAGCTCCAGAACCTTA 59.020 45.455 11.74 0.00 0.00 2.69
587 660 5.250774 AGGTTTCAGCTCCAGAACCTTATAA 59.749 40.000 11.74 0.00 0.00 0.98
588 661 5.354513 GGTTTCAGCTCCAGAACCTTATAAC 59.645 44.000 8.91 0.00 0.00 1.89
589 662 4.755266 TCAGCTCCAGAACCTTATAACC 57.245 45.455 0.00 0.00 0.00 2.85
592 665 5.903010 TCAGCTCCAGAACCTTATAACCATA 59.097 40.000 0.00 0.00 0.00 2.74
594 667 6.876257 CAGCTCCAGAACCTTATAACCATATC 59.124 42.308 0.00 0.00 0.00 1.63
595 668 6.558775 AGCTCCAGAACCTTATAACCATATCA 59.441 38.462 0.00 0.00 0.00 2.15
596 669 6.651225 GCTCCAGAACCTTATAACCATATCAC 59.349 42.308 0.00 0.00 0.00 3.06
612 685 7.596494 ACCATATCACAAACTGACAATTTCTG 58.404 34.615 0.00 0.00 0.00 3.02
617 690 7.572523 TCACAAACTGACAATTTCTGAGAAT 57.427 32.000 0.00 0.00 0.00 2.40
636 709 8.008513 TGAGAATCAGTATACCCAACTAAGAC 57.991 38.462 0.00 0.00 42.56 3.01
639 712 8.822805 AGAATCAGTATACCCAACTAAGACAAA 58.177 33.333 0.00 0.00 0.00 2.83
640 713 8.788325 AATCAGTATACCCAACTAAGACAAAC 57.212 34.615 0.00 0.00 0.00 2.93
659 732 4.727507 AACGAAGAGACACTGCTCATAT 57.272 40.909 0.00 0.00 37.37 1.78
660 733 5.836821 AACGAAGAGACACTGCTCATATA 57.163 39.130 0.00 0.00 37.37 0.86
673 748 8.528643 ACACTGCTCATATACTACTAACAAACA 58.471 33.333 0.00 0.00 0.00 2.83
675 750 7.707035 ACTGCTCATATACTACTAACAAACAGC 59.293 37.037 0.00 0.00 0.00 4.40
678 753 8.543774 GCTCATATACTACTAACAAACAGCAAG 58.456 37.037 0.00 0.00 0.00 4.01
679 754 9.803315 CTCATATACTACTAACAAACAGCAAGA 57.197 33.333 0.00 0.00 0.00 3.02
695 787 2.046507 GAGTGTCTGCCTGCCCAG 60.047 66.667 0.00 0.00 0.00 4.45
740 836 4.318332 TCAGGTAAACAAGCATGAGACAG 58.682 43.478 0.00 0.00 0.00 3.51
761 857 0.252012 TTTACAACAGGGCATGGGGG 60.252 55.000 3.46 0.00 0.00 5.40
763 859 4.387343 CAACAGGGCATGGGGGCT 62.387 66.667 3.46 0.00 42.84 5.19
766 862 4.828296 CAGGGCATGGGGGCTCAC 62.828 72.222 0.00 0.00 42.84 3.51
799 897 2.758423 ACCGAATAGATGGGCAAAAACC 59.242 45.455 0.00 0.00 0.00 3.27
808 906 1.369321 GGCAAAAACCATGGGCGAA 59.631 52.632 18.09 0.00 0.00 4.70
838 936 0.539669 GGGGTGGGAGAACAAACCTG 60.540 60.000 0.00 0.00 33.02 4.00
899 998 0.763035 ACCAGTCCACAACCTACCAC 59.237 55.000 0.00 0.00 0.00 4.16
911 1010 3.503800 ACCTACCACCCTTTTCAGTTC 57.496 47.619 0.00 0.00 0.00 3.01
961 1060 2.203422 CCAAACAACCCGCTCCCA 60.203 61.111 0.00 0.00 0.00 4.37
1011 1110 2.288825 CGAGCATCCCCTATTAAAGCGA 60.289 50.000 0.00 0.00 0.00 4.93
1032 1131 1.597854 CACCCATCACGCACACAGT 60.598 57.895 0.00 0.00 0.00 3.55
1187 1286 4.648626 AAGGCCAAGCTGCTCGCA 62.649 61.111 19.42 0.00 42.61 5.10
1305 1404 1.803519 CTCGAACGCCTCTGTGAGC 60.804 63.158 0.00 0.00 0.00 4.26
1307 1406 1.373497 CGAACGCCTCTGTGAGCTT 60.373 57.895 0.00 0.00 0.00 3.74
1374 1473 3.057946 GGCTGAGAGTTTTAAGTTGGCAG 60.058 47.826 0.00 0.00 0.00 4.85
1389 1488 2.436417 TGGCAGCAATAGTTGTTCTCC 58.564 47.619 0.00 0.00 0.00 3.71
1586 1735 7.104290 ACTAAATCCCAGTTACAGTTTAGCTC 58.896 38.462 0.00 0.00 34.27 4.09
1623 1774 9.694137 GCAGTACCTAACCTATTTTAGAGTATG 57.306 37.037 0.00 0.00 31.60 2.39
1674 1825 7.489113 GTGTGATGAGAAACACAACAAAATTCT 59.511 33.333 0.00 0.00 46.17 2.40
1705 1856 9.927668 AGAAACAAAATTTCACAAGAAAAGAGA 57.072 25.926 0.00 0.00 46.06 3.10
1706 1857 9.958285 GAAACAAAATTTCACAAGAAAAGAGAC 57.042 29.630 0.00 0.00 46.06 3.36
1707 1858 9.710900 AAACAAAATTTCACAAGAAAAGAGACT 57.289 25.926 0.00 0.00 46.06 3.24
1708 1859 8.693542 ACAAAATTTCACAAGAAAAGAGACTG 57.306 30.769 0.00 0.00 46.06 3.51
1740 1893 2.688446 CTCCTACAGTCATTGACCGCTA 59.312 50.000 13.14 0.24 32.18 4.26
1771 1924 2.422597 TCCACCTAGAAACAACATGCG 58.577 47.619 0.00 0.00 0.00 4.73
1775 1928 1.464023 CCTAGAAACAACATGCGTGCG 60.464 52.381 5.64 0.00 0.00 5.34
1832 1985 6.861065 TTTTTGCTCTAGGACAAACACTAG 57.139 37.500 9.68 0.00 35.60 2.57
1880 2040 6.783708 ACACCATTTGTTTTTGTCCTTCTA 57.216 33.333 0.00 0.00 33.09 2.10
1903 2063 0.881796 GTGGTGAGGGCTAAGCAAAC 59.118 55.000 0.00 0.00 0.00 2.93
1968 2128 6.937436 ATTTGTTATGTATTCCCTCCGTTC 57.063 37.500 0.00 0.00 0.00 3.95
1982 2142 3.581755 CTCCGTTCGGAAATAAGTGACA 58.418 45.455 14.79 0.00 33.41 3.58
2036 2196 6.001460 ACAACACTTATTTCCGAATTGAGGA 58.999 36.000 0.00 0.00 35.69 3.71
2076 2236 8.275187 TCAGTCCCTCCAATGTATGTATAATT 57.725 34.615 0.00 0.00 0.00 1.40
2185 2345 3.560882 CCCAGAATTGAAGACAGAAGGCT 60.561 47.826 0.00 0.00 0.00 4.58
2550 2710 2.297597 CCCTGATCGTCCTTATGACCTC 59.702 54.545 0.00 0.00 41.18 3.85
2814 2974 5.125578 GGTTGGGATAAAGGAGTTCAATGAC 59.874 44.000 0.00 0.00 0.00 3.06
3124 3284 7.437713 ACTACCAGATACATGGAAAGATCAA 57.562 36.000 0.00 0.00 43.57 2.57
3137 3297 9.211485 CATGGAAAGATCAAAAACAAGCTTTAT 57.789 29.630 0.00 0.00 0.00 1.40
3264 3424 6.813649 TGATTTCTGTTCACTACATACTCAGC 59.186 38.462 0.00 0.00 35.85 4.26
3347 3507 5.221843 TGTTCCCAAGACTGTATAAGCTGTT 60.222 40.000 0.00 0.00 0.00 3.16
3386 3549 4.274950 GCTGGTTGTACAATGTACAAGTGT 59.725 41.667 31.85 16.94 38.01 3.55
3546 3714 4.870021 ATCAAGATCCCCTTAGCACTTT 57.130 40.909 0.00 0.00 32.86 2.66
3550 3718 5.013704 TCAAGATCCCCTTAGCACTTTAACA 59.986 40.000 0.00 0.00 32.86 2.41
3605 3774 5.860716 GGCAACAAAATAGAAGAAGCTCTTG 59.139 40.000 3.55 0.00 36.73 3.02
3700 3877 3.464833 ACCTTGAAAGATAGGCCCATGAT 59.535 43.478 0.00 0.00 34.79 2.45
3701 3878 4.665009 ACCTTGAAAGATAGGCCCATGATA 59.335 41.667 0.00 0.00 34.79 2.15
3702 3879 5.134339 ACCTTGAAAGATAGGCCCATGATAA 59.866 40.000 0.00 0.00 34.79 1.75
3703 3880 5.474876 CCTTGAAAGATAGGCCCATGATAAC 59.525 44.000 0.00 0.00 0.00 1.89
3704 3881 5.645056 TGAAAGATAGGCCCATGATAACA 57.355 39.130 0.00 0.00 0.00 2.41
3705 3882 6.204852 TGAAAGATAGGCCCATGATAACAT 57.795 37.500 0.00 0.00 37.19 2.71
3925 4102 3.820467 TCATCTTAGCAACAACACCCTTG 59.180 43.478 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.279758 TCACAAGCATACAACGAATGAATATGA 59.720 33.333 0.00 0.00 0.00 2.15
2 3 7.374228 GTCACAAGCATACAACGAATGAATATG 59.626 37.037 0.00 0.00 0.00 1.78
3 4 7.409697 GTCACAAGCATACAACGAATGAATAT 58.590 34.615 0.00 0.00 0.00 1.28
4 5 6.454981 CGTCACAAGCATACAACGAATGAATA 60.455 38.462 0.00 0.00 32.17 1.75
5 6 5.631026 GTCACAAGCATACAACGAATGAAT 58.369 37.500 0.00 0.00 0.00 2.57
6 7 4.376920 CGTCACAAGCATACAACGAATGAA 60.377 41.667 0.00 0.00 32.17 2.57
7 8 3.122780 CGTCACAAGCATACAACGAATGA 59.877 43.478 0.00 0.00 32.17 2.57
8 9 3.120683 ACGTCACAAGCATACAACGAATG 60.121 43.478 7.75 0.00 34.46 2.67
9 10 3.064207 ACGTCACAAGCATACAACGAAT 58.936 40.909 7.75 0.00 34.46 3.34
10 11 2.475818 ACGTCACAAGCATACAACGAA 58.524 42.857 7.75 0.00 34.46 3.85
11 12 2.143008 ACGTCACAAGCATACAACGA 57.857 45.000 7.75 0.00 34.46 3.85
12 13 4.577687 AATACGTCACAAGCATACAACG 57.422 40.909 0.00 0.00 36.29 4.10
13 14 5.949787 CGTTAATACGTCACAAGCATACAAC 59.050 40.000 0.00 0.00 42.72 3.32
14 15 6.085121 CGTTAATACGTCACAAGCATACAA 57.915 37.500 0.00 0.00 42.72 2.41
15 16 5.689927 CGTTAATACGTCACAAGCATACA 57.310 39.130 0.00 0.00 42.72 2.29
36 37 7.452630 TTTTTCTTTTTGTTAAACGGGATCG 57.547 32.000 0.00 0.00 43.02 3.69
37 38 9.644993 CAATTTTTCTTTTTGTTAAACGGGATC 57.355 29.630 0.00 0.00 0.00 3.36
38 39 9.384764 TCAATTTTTCTTTTTGTTAAACGGGAT 57.615 25.926 0.00 0.00 0.00 3.85
39 40 8.773404 TCAATTTTTCTTTTTGTTAAACGGGA 57.227 26.923 0.00 0.00 0.00 5.14
40 41 9.995957 AATCAATTTTTCTTTTTGTTAAACGGG 57.004 25.926 0.00 0.00 0.00 5.28
48 49 8.862074 GCTTTGCAAATCAATTTTTCTTTTTGT 58.138 25.926 13.23 0.00 34.12 2.83
49 50 8.861101 TGCTTTGCAAATCAATTTTTCTTTTTG 58.139 25.926 13.23 0.00 34.76 2.44
50 51 8.983307 TGCTTTGCAAATCAATTTTTCTTTTT 57.017 23.077 13.23 0.00 34.76 1.94
51 52 8.245491 ACTGCTTTGCAAATCAATTTTTCTTTT 58.755 25.926 13.23 0.00 38.41 2.27
52 53 7.764331 ACTGCTTTGCAAATCAATTTTTCTTT 58.236 26.923 13.23 0.00 38.41 2.52
53 54 7.066043 TGACTGCTTTGCAAATCAATTTTTCTT 59.934 29.630 13.23 0.00 38.41 2.52
54 55 6.539464 TGACTGCTTTGCAAATCAATTTTTCT 59.461 30.769 13.23 0.00 38.41 2.52
55 56 6.717413 TGACTGCTTTGCAAATCAATTTTTC 58.283 32.000 13.23 6.78 38.41 2.29
56 57 6.680874 TGACTGCTTTGCAAATCAATTTTT 57.319 29.167 13.23 0.00 38.41 1.94
57 58 6.870971 ATGACTGCTTTGCAAATCAATTTT 57.129 29.167 13.23 0.00 38.41 1.82
58 59 6.870971 AATGACTGCTTTGCAAATCAATTT 57.129 29.167 13.23 3.27 38.41 1.82
59 60 7.966246 TTAATGACTGCTTTGCAAATCAATT 57.034 28.000 13.23 13.18 38.41 2.32
60 61 7.966246 TTTAATGACTGCTTTGCAAATCAAT 57.034 28.000 13.23 4.20 38.41 2.57
61 62 7.966246 ATTTAATGACTGCTTTGCAAATCAA 57.034 28.000 13.23 0.09 38.41 2.57
62 63 7.966246 AATTTAATGACTGCTTTGCAAATCA 57.034 28.000 13.23 13.96 38.41 2.57
91 92 7.942341 ACTCCAACTCATTACAGATACCAAAAA 59.058 33.333 0.00 0.00 0.00 1.94
92 93 7.390440 CACTCCAACTCATTACAGATACCAAAA 59.610 37.037 0.00 0.00 0.00 2.44
93 94 6.878923 CACTCCAACTCATTACAGATACCAAA 59.121 38.462 0.00 0.00 0.00 3.28
94 95 6.406370 CACTCCAACTCATTACAGATACCAA 58.594 40.000 0.00 0.00 0.00 3.67
95 96 5.104941 CCACTCCAACTCATTACAGATACCA 60.105 44.000 0.00 0.00 0.00 3.25
96 97 5.128827 TCCACTCCAACTCATTACAGATACC 59.871 44.000 0.00 0.00 0.00 2.73
97 98 6.222038 TCCACTCCAACTCATTACAGATAC 57.778 41.667 0.00 0.00 0.00 2.24
98 99 5.363868 CCTCCACTCCAACTCATTACAGATA 59.636 44.000 0.00 0.00 0.00 1.98
99 100 4.163078 CCTCCACTCCAACTCATTACAGAT 59.837 45.833 0.00 0.00 0.00 2.90
100 101 3.515502 CCTCCACTCCAACTCATTACAGA 59.484 47.826 0.00 0.00 0.00 3.41
101 102 3.369892 CCCTCCACTCCAACTCATTACAG 60.370 52.174 0.00 0.00 0.00 2.74
102 103 2.571653 CCCTCCACTCCAACTCATTACA 59.428 50.000 0.00 0.00 0.00 2.41
103 104 2.838202 TCCCTCCACTCCAACTCATTAC 59.162 50.000 0.00 0.00 0.00 1.89
104 105 3.107601 CTCCCTCCACTCCAACTCATTA 58.892 50.000 0.00 0.00 0.00 1.90
105 106 1.912043 CTCCCTCCACTCCAACTCATT 59.088 52.381 0.00 0.00 0.00 2.57
106 107 1.203364 ACTCCCTCCACTCCAACTCAT 60.203 52.381 0.00 0.00 0.00 2.90
107 108 0.191064 ACTCCCTCCACTCCAACTCA 59.809 55.000 0.00 0.00 0.00 3.41
108 109 2.104170 CTACTCCCTCCACTCCAACTC 58.896 57.143 0.00 0.00 0.00 3.01
109 110 1.433592 ACTACTCCCTCCACTCCAACT 59.566 52.381 0.00 0.00 0.00 3.16
110 111 1.939980 ACTACTCCCTCCACTCCAAC 58.060 55.000 0.00 0.00 0.00 3.77
111 112 2.715763 AACTACTCCCTCCACTCCAA 57.284 50.000 0.00 0.00 0.00 3.53
112 113 2.024273 CCTAACTACTCCCTCCACTCCA 60.024 54.545 0.00 0.00 0.00 3.86
113 114 2.244252 TCCTAACTACTCCCTCCACTCC 59.756 54.545 0.00 0.00 0.00 3.85
114 115 3.666345 TCCTAACTACTCCCTCCACTC 57.334 52.381 0.00 0.00 0.00 3.51
115 116 4.415224 TTTCCTAACTACTCCCTCCACT 57.585 45.455 0.00 0.00 0.00 4.00
116 117 5.695424 AATTTCCTAACTACTCCCTCCAC 57.305 43.478 0.00 0.00 0.00 4.02
117 118 6.127253 CGTAAATTTCCTAACTACTCCCTCCA 60.127 42.308 0.00 0.00 0.00 3.86
118 119 6.127225 ACGTAAATTTCCTAACTACTCCCTCC 60.127 42.308 0.00 0.00 0.00 4.30
119 120 6.871844 ACGTAAATTTCCTAACTACTCCCTC 58.128 40.000 0.00 0.00 0.00 4.30
120 121 6.864151 ACGTAAATTTCCTAACTACTCCCT 57.136 37.500 0.00 0.00 0.00 4.20
121 122 7.708322 CCTTACGTAAATTTCCTAACTACTCCC 59.292 40.741 9.68 0.00 0.00 4.30
122 123 8.253810 ACCTTACGTAAATTTCCTAACTACTCC 58.746 37.037 9.68 0.00 0.00 3.85
123 124 9.080915 CACCTTACGTAAATTTCCTAACTACTC 57.919 37.037 9.68 0.00 0.00 2.59
124 125 8.037166 CCACCTTACGTAAATTTCCTAACTACT 58.963 37.037 9.68 0.00 0.00 2.57
125 126 8.034804 TCCACCTTACGTAAATTTCCTAACTAC 58.965 37.037 9.68 0.00 0.00 2.73
126 127 8.133024 TCCACCTTACGTAAATTTCCTAACTA 57.867 34.615 9.68 0.00 0.00 2.24
127 128 7.008021 TCCACCTTACGTAAATTTCCTAACT 57.992 36.000 9.68 0.00 0.00 2.24
128 129 7.671495 TTCCACCTTACGTAAATTTCCTAAC 57.329 36.000 9.68 0.00 0.00 2.34
129 130 7.095271 CGTTTCCACCTTACGTAAATTTCCTAA 60.095 37.037 9.68 0.00 0.00 2.69
130 131 6.368516 CGTTTCCACCTTACGTAAATTTCCTA 59.631 38.462 9.68 0.00 0.00 2.94
131 132 5.179929 CGTTTCCACCTTACGTAAATTTCCT 59.820 40.000 9.68 0.00 0.00 3.36
132 133 5.049474 ACGTTTCCACCTTACGTAAATTTCC 60.049 40.000 9.68 0.00 45.59 3.13
133 134 5.989249 ACGTTTCCACCTTACGTAAATTTC 58.011 37.500 9.68 0.00 45.59 2.17
139 140 4.037446 ACACTTACGTTTCCACCTTACGTA 59.963 41.667 0.00 0.00 45.59 3.57
141 142 3.182972 CACACTTACGTTTCCACCTTACG 59.817 47.826 0.00 0.00 40.85 3.18
142 143 3.059393 GCACACTTACGTTTCCACCTTAC 60.059 47.826 0.00 0.00 0.00 2.34
143 144 3.132925 GCACACTTACGTTTCCACCTTA 58.867 45.455 0.00 0.00 0.00 2.69
144 145 1.944709 GCACACTTACGTTTCCACCTT 59.055 47.619 0.00 0.00 0.00 3.50
145 146 1.589803 GCACACTTACGTTTCCACCT 58.410 50.000 0.00 0.00 0.00 4.00
146 147 0.233848 CGCACACTTACGTTTCCACC 59.766 55.000 0.00 0.00 0.00 4.61
147 148 0.932399 ACGCACACTTACGTTTCCAC 59.068 50.000 0.00 0.00 40.09 4.02
148 149 2.034432 TCTACGCACACTTACGTTTCCA 59.966 45.455 0.00 0.00 43.35 3.53
149 150 2.406357 GTCTACGCACACTTACGTTTCC 59.594 50.000 0.00 0.00 43.35 3.13
150 151 2.406357 GGTCTACGCACACTTACGTTTC 59.594 50.000 0.00 0.00 43.35 2.78
151 152 2.397549 GGTCTACGCACACTTACGTTT 58.602 47.619 0.00 0.00 43.35 3.60
152 153 1.664016 CGGTCTACGCACACTTACGTT 60.664 52.381 0.00 0.00 43.35 3.99
153 154 0.110056 CGGTCTACGCACACTTACGT 60.110 55.000 0.00 0.00 45.85 3.57
154 155 0.166597 TCGGTCTACGCACACTTACG 59.833 55.000 0.00 0.00 43.86 3.18
155 156 1.069022 TGTCGGTCTACGCACACTTAC 60.069 52.381 0.00 0.00 43.86 2.34
156 157 1.198408 CTGTCGGTCTACGCACACTTA 59.802 52.381 0.00 0.00 43.86 2.24
157 158 0.039437 CTGTCGGTCTACGCACACTT 60.039 55.000 0.00 0.00 43.86 3.16
158 159 1.579932 CTGTCGGTCTACGCACACT 59.420 57.895 0.00 0.00 43.86 3.55
159 160 2.087009 GCTGTCGGTCTACGCACAC 61.087 63.158 0.00 0.00 43.86 3.82
160 161 2.196382 GAGCTGTCGGTCTACGCACA 62.196 60.000 0.00 0.00 43.86 4.57
161 162 1.514443 GAGCTGTCGGTCTACGCAC 60.514 63.158 0.00 0.00 43.86 5.34
162 163 1.969589 TGAGCTGTCGGTCTACGCA 60.970 57.895 0.00 0.00 43.86 5.24
163 164 1.514443 GTGAGCTGTCGGTCTACGC 60.514 63.158 0.00 0.00 43.86 4.42
164 165 1.136984 GGTGAGCTGTCGGTCTACG 59.863 63.158 0.00 0.00 46.11 3.51
165 166 0.109226 GTGGTGAGCTGTCGGTCTAC 60.109 60.000 0.00 0.00 38.45 2.59
166 167 0.538746 TGTGGTGAGCTGTCGGTCTA 60.539 55.000 0.00 0.00 38.45 2.59
167 168 1.399744 TTGTGGTGAGCTGTCGGTCT 61.400 55.000 0.00 0.00 38.45 3.85
168 169 1.069090 TTGTGGTGAGCTGTCGGTC 59.931 57.895 0.00 0.00 38.14 4.79
169 170 1.227556 GTTGTGGTGAGCTGTCGGT 60.228 57.895 0.00 0.00 0.00 4.69
170 171 1.961277 GGTTGTGGTGAGCTGTCGG 60.961 63.158 0.00 0.00 0.00 4.79
171 172 2.310233 CGGTTGTGGTGAGCTGTCG 61.310 63.158 0.00 0.00 0.00 4.35
172 173 1.961277 CCGGTTGTGGTGAGCTGTC 60.961 63.158 0.00 0.00 0.00 3.51
173 174 2.111043 CCGGTTGTGGTGAGCTGT 59.889 61.111 0.00 0.00 0.00 4.40
174 175 2.669569 CCCGGTTGTGGTGAGCTG 60.670 66.667 0.00 0.00 0.00 4.24
175 176 4.643387 GCCCGGTTGTGGTGAGCT 62.643 66.667 0.00 0.00 0.00 4.09
236 271 3.400505 TTCTGTATGTACTCGTGAGCG 57.599 47.619 0.00 0.00 39.92 5.03
246 281 5.952526 TCTTCGGCGATATTCTGTATGTA 57.047 39.130 11.76 0.00 0.00 2.29
328 365 3.064900 ACTGCCAAGATGAAGGAGAAC 57.935 47.619 0.00 0.00 0.00 3.01
396 445 0.409092 ATGAATCCTTGCCCACACCA 59.591 50.000 0.00 0.00 0.00 4.17
587 660 7.448161 TCAGAAATTGTCAGTTTGTGATATGGT 59.552 33.333 14.30 0.00 37.56 3.55
588 661 7.819644 TCAGAAATTGTCAGTTTGTGATATGG 58.180 34.615 14.30 0.00 37.56 2.74
589 662 8.724229 TCTCAGAAATTGTCAGTTTGTGATATG 58.276 33.333 17.37 9.18 37.93 1.78
592 665 7.572523 TTCTCAGAAATTGTCAGTTTGTGAT 57.427 32.000 17.37 0.00 37.93 3.06
594 667 7.420002 TGATTCTCAGAAATTGTCAGTTTGTG 58.580 34.615 10.61 10.61 32.81 3.33
595 668 7.572523 TGATTCTCAGAAATTGTCAGTTTGT 57.427 32.000 0.00 0.00 0.00 2.83
612 685 8.008513 TGTCTTAGTTGGGTATACTGATTCTC 57.991 38.462 2.25 0.00 0.00 2.87
617 690 6.209192 TCGTTTGTCTTAGTTGGGTATACTGA 59.791 38.462 2.25 0.00 0.00 3.41
629 702 5.282510 CAGTGTCTCTTCGTTTGTCTTAGT 58.717 41.667 0.00 0.00 0.00 2.24
636 709 2.473816 TGAGCAGTGTCTCTTCGTTTG 58.526 47.619 13.40 0.00 34.29 2.93
639 712 4.884744 AGTATATGAGCAGTGTCTCTTCGT 59.115 41.667 13.40 5.47 34.29 3.85
640 713 5.431420 AGTATATGAGCAGTGTCTCTTCG 57.569 43.478 13.40 0.00 34.29 3.79
659 732 6.812998 ACACTCTTGCTGTTTGTTAGTAGTA 58.187 36.000 0.00 0.00 0.00 1.82
660 733 5.671493 ACACTCTTGCTGTTTGTTAGTAGT 58.329 37.500 0.00 0.00 0.00 2.73
673 748 1.302351 GCAGGCAGACACTCTTGCT 60.302 57.895 0.00 0.00 28.14 3.91
675 750 1.673665 GGGCAGGCAGACACTCTTG 60.674 63.158 0.00 0.00 0.00 3.02
678 753 2.046507 CTGGGCAGGCAGACACTC 60.047 66.667 0.00 0.00 0.00 3.51
679 754 2.527624 TCTGGGCAGGCAGACACT 60.528 61.111 0.00 0.00 0.00 3.55
695 787 1.731720 GTGGTTGATGCTGGAGTCTC 58.268 55.000 0.00 0.00 0.00 3.36
740 836 1.275010 CCCCATGCCCTGTTGTAAAAC 59.725 52.381 0.00 0.00 0.00 2.43
761 857 1.071605 GGTGTGATCTTCGTGTGAGC 58.928 55.000 0.00 0.00 0.00 4.26
763 859 0.955905 TCGGTGTGATCTTCGTGTGA 59.044 50.000 0.00 0.00 0.00 3.58
766 862 4.028852 TCTATTCGGTGTGATCTTCGTG 57.971 45.455 0.00 0.00 0.00 4.35
767 863 4.499865 CCATCTATTCGGTGTGATCTTCGT 60.500 45.833 0.00 0.00 0.00 3.85
768 864 3.983988 CCATCTATTCGGTGTGATCTTCG 59.016 47.826 0.00 0.00 0.00 3.79
769 865 4.310769 CCCATCTATTCGGTGTGATCTTC 58.689 47.826 0.00 0.00 0.00 2.87
799 897 0.527565 CCTTCTTTGGTTCGCCCATG 59.472 55.000 0.00 0.00 44.74 3.66
822 920 1.949257 CGCAGGTTTGTTCTCCCAC 59.051 57.895 0.00 0.00 0.00 4.61
823 921 1.896660 GCGCAGGTTTGTTCTCCCA 60.897 57.895 0.30 0.00 0.00 4.37
824 922 2.954611 GCGCAGGTTTGTTCTCCC 59.045 61.111 0.30 0.00 0.00 4.30
826 924 1.493311 CTCGCGCAGGTTTGTTCTC 59.507 57.895 8.75 0.00 0.00 2.87
899 998 3.304928 GCATGAGTGTGAACTGAAAAGGG 60.305 47.826 0.00 0.00 0.00 3.95
911 1010 1.626654 GGAACGACGGCATGAGTGTG 61.627 60.000 0.00 0.00 0.00 3.82
961 1060 0.396974 TGTTTGGGTTCAGGCTTGCT 60.397 50.000 0.00 0.00 0.00 3.91
1011 1110 2.112928 TGTGCGTGATGGGTGCTT 59.887 55.556 0.00 0.00 0.00 3.91
1032 1131 1.266178 TCTCCGCTCCTGTGATTTCA 58.734 50.000 0.00 0.00 0.00 2.69
1305 1404 5.972107 ACAAATGACATGAAGGAAGGAAG 57.028 39.130 0.00 0.00 0.00 3.46
1307 1406 6.126863 ACTACAAATGACATGAAGGAAGGA 57.873 37.500 0.00 0.00 0.00 3.36
1374 1473 2.344741 GTCGACGGAGAACAACTATTGC 59.655 50.000 0.00 0.00 0.00 3.56
1519 1643 8.209917 ACATTTTATTTACCGAGTGGAGATTC 57.790 34.615 0.00 0.00 39.21 2.52
1586 1735 5.940470 AGGTTAGGTACTGCTGATTTTCTTG 59.060 40.000 0.00 0.00 41.52 3.02
1691 1842 6.479972 TTCCTACAGTCTCTTTTCTTGTGA 57.520 37.500 0.00 0.00 0.00 3.58
1747 1900 5.564651 CGCATGTTGTTTCTAGGTGGATTTT 60.565 40.000 0.00 0.00 0.00 1.82
1771 1924 6.074249 GGAGAGTAATAATTCTAGTTGCGCAC 60.074 42.308 11.12 5.61 0.00 5.34
1823 1976 3.502123 TTTGAGGGGGTCTAGTGTTTG 57.498 47.619 0.00 0.00 0.00 2.93
1880 2040 1.075374 TGCTTAGCCCTCACCACAAAT 59.925 47.619 0.29 0.00 0.00 2.32
1968 2128 7.141100 ACTAAAACCATGTCACTTATTTCCG 57.859 36.000 0.00 0.00 0.00 4.30
2010 2170 6.072728 CCTCAATTCGGAAATAAGTGTTGTGA 60.073 38.462 0.00 0.00 0.00 3.58
2036 2196 6.067217 AGGGACTGATGCAAATTACTACTT 57.933 37.500 0.00 0.00 37.18 2.24
2076 2236 4.280677 GTCAAATCAAATCACAGGGGAACA 59.719 41.667 0.00 0.00 0.00 3.18
2161 2321 4.565652 GCCTTCTGTCTTCAATTCTGGGTA 60.566 45.833 0.00 0.00 0.00 3.69
2185 2345 0.948623 CGTGGCGTCAATGTTGGAGA 60.949 55.000 0.00 0.00 0.00 3.71
2550 2710 0.317269 CAAACAGAGCAGCACCAACG 60.317 55.000 0.00 0.00 0.00 4.10
2814 2974 1.202290 GGATGCACAGCCCAAAATACG 60.202 52.381 0.00 0.00 0.00 3.06
2838 2998 2.355756 CCTGTTCAATATTGCTGGTCCG 59.644 50.000 10.76 0.00 0.00 4.79
3124 3284 6.345096 ACTGTGCCATATAAAGCTTGTTTT 57.655 33.333 0.00 0.00 0.00 2.43
3137 3297 3.949132 TGTGAAATGCTACTGTGCCATA 58.051 40.909 0.00 0.00 0.00 2.74
3386 3549 8.636213 GGTAGTACCAGTATTAGTTTGCTCATA 58.364 37.037 14.82 0.00 38.42 2.15
3529 3697 5.514500 TTGTTAAAGTGCTAAGGGGATCT 57.486 39.130 0.00 0.00 0.00 2.75
3605 3774 5.052481 GCCATTTCATAATCCCTTTTCTGC 58.948 41.667 0.00 0.00 0.00 4.26
3700 3877 8.141298 TGGGTTCTAGTATTGTCTTCATGTTA 57.859 34.615 0.00 0.00 0.00 2.41
3701 3878 7.016153 TGGGTTCTAGTATTGTCTTCATGTT 57.984 36.000 0.00 0.00 0.00 2.71
3702 3879 6.620877 TGGGTTCTAGTATTGTCTTCATGT 57.379 37.500 0.00 0.00 0.00 3.21
3703 3880 7.011763 CACATGGGTTCTAGTATTGTCTTCATG 59.988 40.741 0.00 0.00 34.91 3.07
3704 3881 7.050377 CACATGGGTTCTAGTATTGTCTTCAT 58.950 38.462 0.00 0.00 0.00 2.57
3705 3882 6.212589 TCACATGGGTTCTAGTATTGTCTTCA 59.787 38.462 0.00 0.00 0.00 3.02
3706 3883 6.640518 TCACATGGGTTCTAGTATTGTCTTC 58.359 40.000 0.00 0.00 0.00 2.87
3707 3884 6.620877 TCACATGGGTTCTAGTATTGTCTT 57.379 37.500 0.00 0.00 0.00 3.01
3902 4079 3.679389 AGGGTGTTGTTGCTAAGATGAG 58.321 45.455 0.00 0.00 0.00 2.90
3910 4087 2.133641 GGCCAAGGGTGTTGTTGCT 61.134 57.895 0.00 0.00 0.00 3.91
3925 4102 3.791586 GGGAGGTCTGCAGAGGCC 61.792 72.222 18.89 16.14 45.45 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.