>input_sequence_36952
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----------------------------------------------------------CTATTAAAGCGAAGCACCCATC
ACGCACACAGTGAAATCACAGGAGCGGAGAACTTGTAAACCTGAAGCGGAAGCAAGCAAGGAGCGCCTGTGAGGCAGCGA
TGTCTGGCCTTGGTGGACTCGGGAGCATCGGCGGGGGCGGCAACGGCATAAGCCACGGCTCGGGGGGCAAGGCCAAGCTG
CTCGCACTCGGCAAGGGTCTCCCTGAACAAGTTCTACCCCAGGAGAAGCTCGTCGAGACCTACCTCCAGGACACCAGCTG
CGACGATCCCGCCACCAGGGCCAAGCTCGAACGCCTCTGTGAGCTTCCTTCCTTCATGTCATTTGTAGTTTTACATATAA
CTGCTTCTCGGGCTGAGAGTTTTAAGTTGGCAGCAATAGTTGTTCTCCGTCGACTTCGAAAACAAAAATAGTTGATTCTC
CGTAAAGAGATCAT-------------------------TGCCATTTGGTTGTAGCATCTTAGTTTACAGAATCTACCAT
GCTTTAGTATAACTGTCAGTTATCATAGGTGCAAAGTGCAACG---------------------AATCTCCACTCGG---
-TAAATAAAATGTTCACATGGTCATTATTACTAAATCCCAGTTACAGTTTAGCTCAAGAAAATCAGCAGTACCTAACCTA
TTTTA--GAGTATGTAAATCATGTGTAAAATGGAATTAGTGTGATGAGAAACACAACAAAATTCTACCTAGAAACAAAAT
TTCACAAGAAAAGAGACTGT--AGGAAAACTCTCCTACAGTCATTGACCGCTAAAAAAAAAAATCCACCTAGAAACAACA
TGCGTGCGCAACTAGAATTATTACTCTCCAATTGTACTTATTTTTTGCTCTAGGACAAACACTAGAC-------CCCCTC
AAAAAAGAACACTAGAACACCATTTGTTTTTGTCCTTCTATTTGTGGTGAGGGCTAAGCAAACAAGAGTTAATAGTACAT
AATCACAAACTATAAACTATACTTATTTGTTATGTATTCCCTCCGTTCGGAAATAAGTGACATGGTTTTAGTTCAAATTT
GAACTAAACTCACAACACTTATTTCCGAATTGAGGAAGTAGTAATTTGCATCAGTCCCTCCAATGTATGTATAATTGTTC
CCCTGTGATTTGATTTGACAGGCAAGACCACAACAGTGAGGACAAGGTACACTGTCATGTCGAAGGAGCTCCTGGATGAA
TACCCAGAATTGAAGACAGAAGGCTCTCCAACATTGACGCCACGGCTTGACATCTGCAATGCCGCGGTGCTTGAACTTGG
TGCTGCTGCAGCTCGTGCCGCCCTTGGTGAGTGGGGCCGTCCAGCAGCTGATATTACCCACCTGGTCTACATCTCCTCCA
GCGAGCTTCGCCTCCCAGGGGGTGATCTTTTCCTGGCAACCCGTCTTGGCCTCTCTCCAAACACAGTGCGCACATCCCTT
CTCTTCCTTGGCTGCTCAGGTGGTGCTGCCGCCCTCCGCACTGCCAAGGACATTGCAGAGAACAACCCAGGGAGCCGTGT
CCTTGTAATAGCGGCGGAGACAACTGTGTTGGGCTTCCGGCCGCCAAGCCCTGATCGTCCTTATGACCTCGTTGGTGCTG
CTCTGTTTGGTGATGGTGCATCAGCTGCAATTATTGGAGCAAGCCCTATCAAAGCAGAAGAGGATCCTTTCTTGGAGCTT
GAGTTCTCAACCCAGGAGTTCCTACCAGGGACAGACAAGGTAATTGATGGCAAGATCTCAGAGGAAGGGATTAACTTCAA
ACTGGGGCGTGATTTGCCTGAAAAGATTGAAAGCCGCATAGAAGGCTTCTGCAGGATACTCATGGACAAGGTTGGGATAA
AGGAGTTCAATGACGTATTTTGGGCTGTGCATCCCGGCGGACCAGCAATATTGAACAGGCTGGAGGTTTGTCTTGAACTT
GAGCCAGATAAACTCAAGATCAGTAGAAAGGCCCTGATGAACTATGGGAATGTGAGCAGCAACACAGTCTTCTATGTGCT
GGAGTATTTGAGGGATGAATTGAAGAAAGGGGCAATAAGGGAAGAGTGGGGATTGATCTTGGCTTTTGGCCCAGGCATCA
CATTTGAAGGAATGCTAGTTCGGGGCATTAACTGAAATTGAAGGAGATCCAAGTAGGTTACTACCAGATACATGGAAAGA
TCAAAAACAAGCTTTATATGGCACAGTAGCATTTCACAA-----------------------------------------
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----------------
>chr1D_1_TraesCS1D01G157500
TTCATATTCATTCGTTGTATGCTTGTGACGTATTAACGATCCCGTTTAACAAAAAGAAAAATTGATTTGCAAAGCAGTCA
TTAAATTTATTTTTTTGGTATCTGTAATGAGTTGGAGTGGAGGGAGTAGTTAGGAAATTTACGTAAGGTGGAAACGTAAG
TGTGCGTAGACCGACAGCTCACCACAACCGGGCCTCGGTCCTGGTCATGTCGAGCAAACCGGCGATGTG-----------
-----------------------CAACAGACGCTCACGAGTAC-ATACAGAATATCGCCGAAGATAACAAACGGAAGCAT
GCAGATGCAGTTTAACAGGCGGCGATGTTG-GAGTGACCCAACAGTTCTCCTTCATCTTG-GCAGTTTTTTTAAGCAAAT
GCTGGCTGTGCCGCGTGGTCCTGGC-----------CGCACGCATGGTGTGGGCAAGGATTCATCGGAGCCAGGGAGCCA
TGTCGCGAGGCCGCGGGCACGGGCTT----TGGGGGCGTGCCAAAAGCCGCGCCGAGTGTGTGCATATAACAACCCTGGC
ACGGTGGCAGAAGTTGT-----------------GGCGTCCCAGGCACAAGCAGCAACAGAACAGAACCTCCAGGTTTCA
GCTCCAG---AACCTTATAACCATATCACAAACTGACAATTTCTGAGAATCAGTATACCCAACTAAGACAAACGAAGAGA
CACTGCTCATATAC--TACTAACAAACAGCAAGA-----------------GTGTCTGCCTGCCCAGAGACTCCAGCATC
AACCACGTTTCAGGT----AAACAAGCATGAGACAGTTTTACAACAGGGCATGGGGGCTCACACG--AAGATCACACCGA
ATAGATGGGCAAAAACCATGGGCGAACCAAAGAAGGGGGGTGGGAGAACAAACCTGCG-CGAGCCGCCCTTCCATAAAAA
CTGGAAGAAAACCAGATGACCAGTCCACAACCTACCACCCTTTTCAGTTCACACTCATGCCGTCGTTCCCTCAGGCCTAA
CACCAAACAACCCGCTCCCAGCAAGCCTGAACCCAAACAGCCCCATGGCGAGCATCCCCTATTAAAGCGAAGCACCCATC
ACGCACACAGTGAAATCACAGGAGCGGAGAACTTGTAAACCTGAAGCGGAAGCAAGCAAGGAGCGCCTGTGAGGCAGCGA
TGTCTGGCCTTGGTGGACTCGGGAGCATCGGCGGGGGCGGCAACGGCATAAGCCACGGCTCGGGGGGCAAGGCCAAGCTG
CTCGCACTCGGCAAGGGTCTCCCTGAACAAGTTCTACCCCAGGAGAAGCTCGTCGAGACCTACCTCCAGGACACCAGCTG
CGACGATCCCGCCACCAGGGCCAAGCTCGAACGCCTCTGTGAGCTTCCTTCCTTCATGTCATTTGTAGTTTTACATATAA
CTGCTTCTCGGGCTGAGAGTTTTAAGTTGGCAGCAATAGTTGTTCTCCGTCGACTTCGAAAACAAAAATAGTTGATTCTC
CGTAAAGAGATCAT-------------------------TGCCATTTGGTTGTAGCATCTTAGTTTACAGAATCTACCAT
GCTTTAGTATAACTGTCAGTTATCATAGGTGCAAAGTGCAACG---------------------AATCTCCACTCGG---
-TAAATAAAATGTTCACATGGTCATTATTACTAAATCCCAGTTACAGTTTAGCTCAAGAAAATCAGCAGTACCTAACCTA
TTTTA--GAGTATGTAAATCATGTGTAAAATGGAATTAGTGTGATGAGAAACACAACAAAATTCTACCTAGAAACAAAAT
TTCACAAGAAAAGAGACTGT--AGGAAAACTCTCCTACAGTCATTGACCGCTAAAAAAAAAAATCCACCTAGAAACAACA
TGCGTGCGCAACTAGAATTATTACTCTCCAATTGTACTTATTTTTTGCTCTAGGACAAACACTAGAC-------CCCCTC
AAAAAAGAACACTAGAACACCATTTGTTTTTGTCCTTCTATTTGTGGTGAGGGCTAAGCAAACAAGAGTTAATAGTACAT
AATCACAAACTATAAACTATACTTATTTGTTATGTATTCCCTCCGTTCGGAAATAAGTGACATGGTTTTAGTTCAAATTT
GAACTAAACTCACAACACTTATTTCCGAATTGAGGAAGTAGTAATTTGCATCAGTCCCTCCAATGTATGTATAATTGTTC
CCCTGTGATTTGATTTGACAGGCAAGACCACAACAGTGAGGACAAGGTACACTGTCATGTCGAAGGAGCTCCTGGATGAA
TACCCAGAATTGAAGACAGAAGGCTCTCCAACATTGACGCCACGGCTTGACATCTGCAATGCCGCGGTGCTTGAACTTGG
TGCTGCTGCAGCTCGTGCCGCCCTTGGTGAGTGGGGCCGTCCAGCAGCTGATATTACCCACCTGGTCTACATCTCCTCCA
GCGAGCTTCGCCTCCCAGGGGGTGATCTTTTCCTGGCAACCCGTCTTGGCCTCTCTCCAAACACAGTGCGCACATCCCTT
CTCTTCCTTGGCTGCTCAGGTGGTGCTGCCGCCCTCCGCACTGCCAAGGACATTGCAGAGAACAACCCAGGGAGCCGTGT
CCTTGTAATAGCGGCGGAGACAACTGTGTTGGGCTTCCGGCCGCCAAGCCCTGATCGTCCTTATGACCTCGTTGGTGCTG
CTCTGTTTGGTGATGGTGCATCAGCTGCAATTATTGGAGCAAGCCCTATCAAAGCAGAAGAGGATCCTTTCTTGGAGCTT
GAGTTCTCAACCCAGGAGTTCCTACCAGGGACAGACAAGGTAATTGATGGCAAGATCTCAGAGGAAGGGATTAACTTCAA
ACTGGGGCGTGATTTGCCTGAAAAGATTGAAAGCCGCATAGAAGGCTTCTGCAGGATACTCATGGACAAGGTTGGGATAA
AGGAGTTCAATGACGTATTTTGGGCTGTGCATCCCGGCGGACCAGCAATATTGAACAGGCTGGAGGTTTGTCTTGAACTT
GAGCCAGATAAACTCAAGATCAGTAGAAAGGCCCTGATGAACTATGGGAATGTGAGCAGCAACACAGTCTTCTATGTGCT
GGAGTATTTGAGGGATGAATTGAAGAAAGGGGCAATAAGGGAAGAGTGGGGATTGATCTTGGCTTTTGGCCCAGGCATCA
CATTTGAAGGAATGCTAGTTCGGGGCATTAACTGAAATTGAAGGAGATCCAAGTAGGTTACTACCAGATACATGGAAAGA
TCAAAAACAAGCTTTATATGGCACAGTAGCATTTCACAATTATAATTATACAGTGTAAGGATAGCAATTCGCGGCTATAA
TTATATACTGTAAGAATATCATAAGCATAGCGTCTTGATGATTTCTGTTCACTACATACTCAGCACTTTGTAATTTTATG
CTTTATGCTATCAATTATCAAACAATGTCAGTTACTCGAGTTTGTTCCCAAGACTGTATAAGCTGTTA---TTTTTTTAA
TCTGTGCTGGTTGTACAATGTACAAGTGTATGAGCAAACTAATACTGGT---ACTACCTTCCTCTCAGAAGGAAAAAGAA
GCAGAACAACTGAGGCTTGAAACATACCATTAT-ATAAAACTATTCTGAATTATACTAAACAAACGGTTACAGTGATA-G
ATAGTAGATAGTATCAAGATCCCCTTAGCACTTTAACAAA-TGTAATATCTTTTTAAGTATTGCCAAAAGGCAACAAAAT
AGAAGAAGCTCTTGCAGAAAAGGGATTATGAAATGGCACTGACCATTCTGCCTTATAGAGACATTACACTCTGATCTAAC
TATTGGACCTTGAAAGATAGGCCC--------ATGATAACATGAAGACAATACTAGAACCCATGTGAATGCCCTTCTTCT
TCATCAACGTTATTCAAAGGCCAAAACACTTGAATAAATCAGAACTGACTTGCATGCCTCCAACAAATCATGGATCTGAA
CTTGGTGCTCCCTCTTCAAGAGATAATTCACCAGCAATCTTCTCCCAAGCAACTTTAGCATCCCCTTTCACAAGAAAGCT
CATCTTAGCAACAACACCCTTGGCCTCTGCAGACCTCCCTCCCTTGACCAACCCCTCGACTAAACCCTTGACAGCCTCAA
ATGATGGGGCTGCCTTCATTGCAAAGCAGCTGTTACAAAGCCACAGTGCATCATCAAGCCTTTCCTTCTCTACCAAACTC
TTAAACAGCAGGACATATGTCTGCGAGTGCACCGACACTCCCAAGTCACTCCTCCCCTCCCGCCTCTTCATCACCTTCAT
CCTCTTGAATACTCGC
>chr1B_178
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CTCACCACAACTGGGCCTCGGTCCTGGTCGTGTCGAGCAAACCGGCGATGTG-----------
-----------------------CAACAGAAGGTCACGAGCAC-ATAGAGAATATCGCCGAAGATAACAAACGGAAGCAT
GCAGATGCAGTTTAACAGGCGGCCATGTTG-GAGTGACCCAACAATTCTCCCTCATCTTT-GCAGTTTTTC-AAGCCAAT
GCTGGCTGTGCCGCTTGGTCCAGGC-----------CGCACGCACGGTGTGGGCAAGGATTCATCGGAGCCAGGGAGCCA
TGCCGCGAGGCCGCGGGCACGGGCTTGGGTTGGGGGCGTGCCAAAAGCCACGCCGAGTGTGTGCATATAACAATCCTGGC
ACGGTGGCAGAAGTTGTGGACAGACTGCATATTAGGCGTCCCAGGCACAAGCAGCAACAGAAGAGAACCTCCAGGTTTCA
GCTCCAA---AACCTTGTAGTGATGTTGAAAACTGACAATTTCTAAGAAACATTATACCCACCTAAGAGAAGTGGAGAGA
CACAGCTCAGTGCTCATACTAACAAACTGTAACCACATTTCACGAGCAAGTGTGTCTGCCTGCCCACAGACTCCAGCATC
AACCACGTTTCAGGTAAACAAACAAGCATGAGACATTTTTACAACAGGGCATGGGGTCACATGAAAAAAGATCACACCGA
ATAGATGGGCAAAAACTATGGGCGAGCCAAAGAAGGGGGTGAGAGGAACGAACCTTCGCCGAGCCGCCCTTCCACAAAAA
CTGGAAGAAAACCAGATGACCAGTCCACAACCTACCATCCTTTTCGGTTTTCACTCACACCGTCGTTCCCTCAGGCCTAA
CACCAAACAACCCGTTCCCTGCAAGCCTGAACCCAAACAGCCCCATGGCGAGCATCCCCTATTAAAGCAGCACGCCCATC
ACGCACACAGCGAAATCACAGGAGCGGAGAACTTGTAAGCCTGAAACGGAAGCAAGCAAGGAGCGCCTGTGAGGCAGCGA
TGTCTGGCCTTGGTGGACTCGGGAGCGTCGGCGGGGGCAGCAACGGCAGAAGCCATGGCTCGGGGGGCAAGGCCAAGCTG
CTCGCGCTCGGCAAGGGTCTCCCTGAGCAAGTTCTACCCCAGGAGAAGCTCGTCGAGACCTACCTCCAGGACACCAGCTG
CGACGATCCCGCCACCAGGGCCAAGCTCGAGCGCCTCTGTGAGTTCCCTTCCTTCATGTCATCTGCAGTTTTACATAC--
CTGCTTCTCGGGCTGAGGCATTTAAGTTGGCAACAATAGTTGGC--------------------------------TCTC
CTTAAAGAGATCACTGGCAACAGTGAGTTGTAATAAGGTTGCCATCTGGTTGTAACATCTTAGTGTACAGAATCTACCAT
GCTTTAGTTTAACTATCAGTTATCATAGGTGCAAAGTGCAATTAGTACAATGGGAAAGACAATCAATCTCCACTCAGTAA
ATAAATAAAATGTTCACATGGTCATTAGTACTAAATCCCGGTCACAGTTTAGGTTAAGAAAATCAGCAGTATCTAAACTA
TTTTA--CAGTA--TAAATCATGTGTAAAATGGAATTAGTGTGATGAGAAACACAACAAAATGCCACCTAGAAACAAAAT
TCCACAAGAAAAGAC----T--AGGAGAACTCTCCTACGGTCATTCACCGCTCAAAAAA-AAATCCACCTAGAAACAACA
TGCATGCACAACTAGAATTATTACTCTCCAATTGTAATTATTTTTTGCTCTAGGAGAAAC-----AC-------CCCCTC
AAATAAGAACACTAGAACACCATTTATTTTCCTCCTTCTGTTTGTGGTGAGGGCTAAGCAAATAAGAGTTAATAGTACAT
AATCACAAACTATAAACTATACTTATTTGTTA---------------------------------------------TTT
GAACTAAAACCACGTCACTTATTTCCGAATGGAGGGAGTAGTAATTTGCATCAGTCCCTCCAATGTATGTATAATGGTTC
CCCTGTGATTTGATTTGACAGGCAAGACCACAACAGTGAGGACAAGGTACACTGTCATGTCGAAGGAGCTCCTGGATGAA
CACCCAGAATTGAAGACAGAAGGCACTCCAACATTGACACCACGGCTTGACATCTGCAATGCCGCGGTGCTTGAACTTGG
TGCTGCTGCAGCTCGTGCCGCCCTTGGTGAGTGGGGCCGTCCAGCAGCTGATATTACCCACCTGGTCTACATCTCCTCCA
GCGAGCTTCGCCTCCCGGGGGGTGATCTTTTCCTGGCAACCCGCCTTGGCCTCTCTCCAAACACAGTGCGCACATCCCTT
CTCTTCCTTGGCTGCTCAGGTGGTGCTGCCGCCCTCCGCACTGCCAAGGACATTGCAGAGAACAACCCAGGGAGCCGTGT
CCTTGTAATAGCGGCGGAGACAACTGTGTTGGGCTTCCGGCCGCCAAGCCCTGATCGTCCTTATGACCTTGTTGGTGCTG
CTCTGTTTGGTGATGGTGCATCAGCTGCAATTATTGGAGCAAGCCCTATCAAAGCAGAAGAGGATCCTTTCTTGGAGCTT
GAGTTCTCAACCCAGGAGTTCCTACCAGGGACAGACAAGGTAATTGATGGCAAGATCTCAGAGGAAGGGATTAACTTCAA
ACTGGGGCGTGATTTGCCTGAAAAGATTGAAAGCCGCATAGAAGGCTTCTGCAGGATACTCATGGACAAGGTTGGGATAA
AGGAATTCAATGATGTATTTTGGGCTGTGCATCCTGGTGGACCAGCAATATTGAACAGGCTGGAGGTTTGTCTTGAACTT
GAGCCAGGTAAACTCAAGATCAGTAGAAAGGCCCTGATGAACTATGGGAATGTGAGCAGCAACACAGTCTTCTATGTGCT
GGAGTATTTGAGGGATGAATTGAAGAAAGGGGCAATAAGGGAAGAGTGGGGATTGATCTTGGCTTTTGGCCCAGGCATCA
CATTTGAAGGAATGCTAGTTCGGGGCACTAACTGAAATCGAAGGAGATCCAAGTAGGTTACTACCAGATACATGGAAAGA
TCACAAACAAGCTTTACATGGCACAGTAGCATTTCACAATTATAATTATACAGTGTAAGGATAGCACTTCGCGACTATAA
TTATATACTCTAAGAATATCATAAGCATAGCGTCTTGATGATTTCTGTTCACTACATACTCAGTACTTTGTAATTTTATG
CTTTATGCTATCAATTATGAAACAATGTCGGTTACTCAAGTTTGTTCCCAAGACTGTATAAGCTGTGATTTTTTTTTTAA
TCTGTGCTGGTTATACAATGTACAAGTGCATGAGCAAACTAATACTGGTACAACTACCTTCCTCTCAGAAGGAAAAAGAA
GCAGAACAACTGAGGCTTGAAACATACCATTATCATAAAACTATTCTGAATTATACTAAGCAAACGGTTACAGTGATAGG
ATAGTAGATAGTATCATGATCCCCTTAGCACTTCAAC-AA-TGTAATATCTTTTTAAGTATTACCAAAAGGCAACAAAAT
AGAAGAAGCTCTTACAGAAAAGGGATTACGAAATGGCACTGACCATTCTGCCTTATAGAGACATTACACTCTGATCTAAC
TATTGGACCTTGAAAGATAGGCCC--------ATGA--------AGACAATACTAGAACCCATGTGAATGCCCTTCTTGT
TCATCAACGTTATTCAAAGGCCAAAACACTTGAATAAATCAGAACTGACTTGCATGCCTCCAACAAATCATGGATCTGAA
CTTGGTGCTCCCTCTTCAAGAGATAACTCACCAGCAATCTTCTCCCAAGCAACTTTAGCATCCCCTTTCACAAGAAAGTT
CATCTTGGCAACAACACCCTTCGCCTCTGCAGACCTCCCTCCCTTGACCAACCCCTCGACTAAACCCTTGACAGCCTCAA
ATGATGGGGCTGCCTTCATTGCAAAGCAGCTGTTACAAAGCCACAGTGCATCATCAAGCCTTTCCTTCTCTACCAAACTC
TTAAACAGCAGGACATATGTCTGGGAGTGCACCGACACTCCCAAGTCACTCCTCCCTTCCCGCCTCTTCATCACCTTCAT
CCTCTTGAATACTCGC
>chr1A_179
TCACCC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ACAACCGGGCCTC-GTCCTGGTCATGTCGAGCAAACCGGCGATGTGAGGCTACGCAT
TGTCTGTAGAAGACTGCTGTGTGCAACAGATGCTCACGACGAGTATACAGAGTATCGCCAAAGATAAGAAACGGAAGCAT
GCAGCTGCAGTCAAACAGGTGGCGATGTTGGGAGTGACCGAACAATTCTACCTCGTCTTGGGCAGTTTTTG-AAGCCAAT
GCTAGCCGTGCCGCTTGGTACAGGCCGTCTAGAGAGCGCACGCACGGTGTGGGCAAGGATCG-TCGGAGCCAGGGAGCCG
TGTCGCGCGGGCTTGAGTTGG----------------------------GCGCCGAGTGTGTGCATATAACAATCCTGGC
ACGGTGGCACAAGTTGCGCGCAGACCGCGTATTAGGCGTCCCAGGCACAAGCAGCAACAGAAGAGAACCTCCAGGTTTCA
GCTCCAGAACAACCTTGTAGTGATGTTGAAAACTGACAATTTCCAAGAAACAGTATACCCACCGAAGAGAAGTGAAGAGT
CACTGCTCATA--C--TAGTAACAAACTGTAACCACATTTCACGAGCAAGTGTGTCTGCCTGCCCACAGACTCCAGCATC
AACCACGTTTCAGGTAAACAAACAAGCACGAGACATTTTTACAACAGGGCACGGGGTCACATGAAAAAAGATCACACCGA
ATAGATGGGCAAAAACTATGGGCGAGCCAAAGAAGGGGGTGTGAAGAACGAACCTTCGCCGAGCCGCCCTTCCACAAAAA
CTGGAAGAAAACCAGATGACCAATCCACAACCTACCATCCTTTTCAGTTTACACTCATGCCGTCGTTCCCTCAGGCCTAA
CACCAAACAACCCGCTCCCTGCAAGCCTGAACCCAAACAGCCCCATGGCGAGCATCCCCTATTAAAGCGGAGCACCCATC
ATGCACACAGCGAAATCACAGGAGCGGAGAACTTGTAAACCTGAAGCGGAAGGAAGCAAGGAGCGACTGTGAGGCAGCGA
TGTCTGGCCTTGGTGGAGTCGGGAGCATTGGCGGAGGCGGCAACGGCAGAAGCCAAGGCTTGGGGGGCAAGGCCAAGCTG
CTCGCGCTCGGCAAGGGACTCCCTGAACAAGTTCTACCCCAGGAGAAGCTCGTGGAGACCTACCTCCAGGACACCAGCTG
CGACGATCCCGCCACCAGGGCCAAGCTCGAACGCCTCTGTGAGTTCCCTTCCTTCATGTCATTTGTAGTTTTACATATAA
CAGCTTCCCGGGCTGAGAGTTTTAAGTTGGCAACAATAGTTGTTCTCTGTCGACTTCGAAAACAAAAATAGTTGATTCTC
CGTAAAGAGATCATTGACACTAGTGAGTTGTAGTAATACTGCCATTTGGTTGCAGCATCTTAGTTTACAGAATCTACCAT
GCTTTAGTATAACTGTCAGTTATCATAGGTGCAAAGTGCGACA---------------------AATCTCCACTCGG---
-TAAATAAAATGTTAACATGGTCATTATTACTAAATCCCAGTTACAGTTTAGCTTAAGAAAATCAGCAGTACCTAACCTA
TTTTATAGAGTATATAAAT--TGTGTAAAATGGAATTAGTGTGATGAGAAACACAACAAAATTCCACCTAGAAACAAAAT
TCCACAAGAAAAGAC----TGTAGGAAAACTCGCCTACAGTCATTGACCGCTCCAAAAA-AAATCCACCTAGAAACAACA
TGCATGCACAACTAGAATTATTACTCTCCAATTGTACTTATTTTTTGCTCTAGGAGAAAC-----ACTAGGACACCCCTC
AAAAAAGAACACTAGAACACCATTTGTTTTTGTCCTTCTGTTTGTGGTGAGGGCTAAGCAAATAAGAGTTAATAGTACAT
AATCACAAACTATAAACTATACTTATTTGTTATGTATTCCCTCCGTTTGGAAATAAGTGACGTGGTTTTAGTTCAAATTT
GAACTAAACCCACAACACTTATTTCCGAATTGAGGGAGTAGTAATTTGCATCAGTCCCTCCAATGTATGTATAATGGTTC
CCCTGTGATTTGATTTGACAGGCAAGACCACAACAGTGAGGACAAGGTACACTGTCATGTCGAAGGAGCTCCTGGATGAA
CACCCAGAATTGAAGACAGAAGGCACTCCAACATTGACGCCACGGCTTGACATCTGCAATGCCGCGGTGCTTGAACTTGG
TGCTGCTGCAGCTCGTGCCGCCCTTGGTGAGTGGGGCCGTCCGGCAGCTGATATTACCCACCTGGTCTACATCTCCTCCA
GCGAGCTTCGCCTCCCAGGGGGTGATCTTTTCCTGGCAACCCGTCTTGGCCTCTCTCCAAACACAGTGCGCACATCCCTT
CTCTTCCTTGGCTGCTCAGGTGGTGCTGCCGCCCTCCGCACTGCCAAGGACATTGCAGAGAACAACCCAGGGAGCCGTGT
CCTTGTAATAGCGGCGGAGACAACTGTGTTGGGCTTCCGGCCGCCAAGCCCTGATCGTCCTTATGACCTTGTTGGTGCTG
CTCTGTTTGGTGATGGTGCATCAGCTGCAATTATTGGAGCAAGCCCTATCAAAGCAGAAGAGGATCCTTTCTTGGAGCTT
GAGTTCTCAACCCAGGAGTTCCTACCAGGGACAGACAAGGTAATTGATGGCAAAATCTCAGAGGAAGGGATTAACTTCAA
ACTGGGGCGTGATTTGCCTGAAAAGATTGAAAGCCGCATAGAAGGCTTCTGCAGGATACTCATGGACAAGGTTGGGATAA
AGGAGTTCAATGATGTATTTTGGGCTGTGCATCCCGGTGGACCAGCAATATTGAACAGGCTGGAGGTTTGTCTTCAACTT
GAGCCAGATAAACTCAAGATCAGTAGAAAGGCCCTGATGAACTATGGGAATGTGAGCAGTAACACAGTCTTCTATGTGCT
GGAGTATTTGAGGGATGAATTGAAGAAAGGGGCAATAAGGGAAGAGTGGGGATTGATCTTGGCTTTTGGCCCAGGCATCA
CATTTGAAGGACTGCTAGTTCGGGGCATTAACTGAAATTGAAGGAGATCCAAGTAGGTTACTACCAGATATATGGAAAGG
TCACAAACAAGCTTTACATGGCACGGTAGCATTTCACAATTATAATTATACAGTGTAAGGATAGCAATTCGCGACTATAA
TTATATACTGTAAGAATATCATAAGCATAGCGTCTTGATGATTTCTGTTCACTACATACTCAGTACTTTGTAATTTTATG
CTTTATGCTATCAATTATCAAACAATGTCAGTTACTCGAGTTTGTTCCCAAGACTGTATAAGCTGTGATT-TTTTTTTAA
TCTGTGCTGGTTGTACAATGTACAAGTGCATGACCAAACTAGTACTGGTACAACTACCTTCCTCTCAGAAGGAAAACGAA
GCAGAACAACTGAGGCTTGAAACATACCATTATCATAAAACTATTCTGAATTACACTAAACAAACGGTTACAGTGATA-G
ATAGTAGATAGTATCATGATTCCCTTAGCACTTCAAC-AAATGTAATATCTTTTTAAGTATTACCAAAAGGCAACAAAAT
AGAAGAAGCTCCTACAGAAAAGGGATTATGAAATGGCGCTGACCATTCTGCCTTATAGAGACATTACACTCTGATCTAAC
TATTGGACCTTGAAAGATAGGCCCATGATAACATGA--------AGACAATACTAGAACCCATGTGAATGCCCTTCTTCT
TCATCAACGTTATTCAAAGGCCAAAACACTTGAATAAATCAGAACTGACTTGCATGCCTCCAACAAATCATGGATCTGAA
CTTGGTGCTCCCTCTTCAAGAGATAATTCACCAGCAATCTTCTCCCAAGCAACTTTAGCATCCCCTTTCACAAGAAAGTT
CATCTTGGCAACAACACCCTTCGCCTCTGCAGACCTCCCTCCCTTCACCAACCCCTCGACTAAACCCTTGACAGCCTCAA
ATGATGGGGCTGCCTTCATTGCAAAGCAGCTGTTACAAAGCCACAGTGCATCATCAAGCCTTTCCTTCTCGACCAAACTC
TTAAACAGCAGGACATATGTCTGCGAGTGCACCGACACTCCCAAGTCACTCCTCCCCTCCCGCCTCTTCATCACCTTCAT
CCTCTTGAATACTCGC
>SNPs
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS---------------------------------------------------------------
------------------------------S---------S---------------------------------------
--------------------------------------------S------S------------------SS----S---
--------------S------S----------------------S-----------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------S-----------------
----------------S--SSS--S-SSS---------------S----S-----------S------S--SS-------
-----------SS--------------S-S--SS--------------------------------S-------------
-----------------------------------S--------------------S-S--SSSS---------------
----------------S--------S-------------SSS-S-----S-----S------------------S-----
-------------------------------------S-----------S------------------------------
-------------------S-------------------------------------------------S----------
----------S---------------------------------------------------------------------
------------------------------------------------S------S------------------------
-----S--------------------------------------------------------------------------
-------------------------------------------S-S----------------------------------
--------------------------------S--------------S--------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
------------------------------------------------------S-------------------------
-------------S--------------------------------------------------S---------------
-S------------SSSSS---------------------------------S------S--------------------
---S---S-----------------------------------------------S----SSSSS---------------
---------------------------------------S----------------------S-----------------
-----------------------------------------------S-------------S------------------
---------S-------------------------S---------------------------------------S----
--------------------------------------------------------------------------------
S-----------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------S----------
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-------------S-----------------------S------------------------------------------
--------------------------------------------------------------------------------
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---S------------S--------------------------------------------------------S------
---------------------------------------------------------------S----------------
------------------------------------------------------------------S-------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
----------------S----------------S---S------------------------S-----------------
-------------S------------------------------------------------------------------
------------------------------------SSSSSSSS------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
------S--------------S----------------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>forward_177
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-----------------------------------------------------------------------------AAG
TGTGCGTAGACCGACAG---------------------------------------------------------------
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>reverse_2040
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---------------------------------------ATTTGTGGTGAGGGCTAAGCA--------------------
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>forward_857
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-------------------------------------TTTACAACAGGGCATGGGGG-----------------------
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--------------------------------------------------------------------------------
----------------
>reverse_2710
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CGTTGGTGCTG
CTCTGTTTG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>forward_936
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GGGGTGGGAGAACAAACCTG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>reverse_2974
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------CGTATTTTGGGCTGTGCATCC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>forward_998
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------ACCAGTCCACAACCTACCAC------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>reverse_2998
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------CGGACCAGCAATATTGAACAGG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>forward_2063
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GTGGTGAGGGCTAAGCAAAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>reverse_4079
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------CT
CATCTTAGCAACAACACCCT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
