Multiple sequence alignment - TraesCS1D01G157300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G157300 chr1D 100.000 3686 0 0 1 3686 221889758 221886073 0.000000e+00 6807
1 TraesCS1D01G157300 chr1B 94.410 3059 113 29 640 3686 317843634 317846646 0.000000e+00 4649
2 TraesCS1D01G157300 chr1B 86.181 1071 118 13 1040 2090 643271064 643270004 0.000000e+00 1131
3 TraesCS1D01G157300 chr1B 89.157 249 21 5 341 586 688760189 688760434 4.620000e-79 305
4 TraesCS1D01G157300 chr1B 88.000 250 24 6 341 587 144874710 144874956 1.290000e-74 291
5 TraesCS1D01G157300 chr1A 95.238 2247 96 4 930 3174 287544200 287541963 0.000000e+00 3546
6 TraesCS1D01G157300 chr1A 87.722 562 48 10 1743 2296 287533968 287533420 1.440000e-178 636
7 TraesCS1D01G157300 chr1A 90.254 472 28 7 2702 3173 287316959 287316506 5.270000e-168 601
8 TraesCS1D01G157300 chr1A 94.620 316 12 5 3263 3577 287316053 287315742 5.530000e-133 484
9 TraesCS1D01G157300 chr1A 87.868 272 21 8 588 852 287544814 287544548 3.580000e-80 309
10 TraesCS1D01G157300 chr1A 86.400 250 24 9 342 587 487020007 487019764 7.850000e-67 265
11 TraesCS1D01G157300 chr1A 99.115 113 1 0 3574 3686 287315226 287315114 1.740000e-48 204
12 TraesCS1D01G157300 chr1A 85.714 168 17 5 2336 2503 287375575 287375415 1.760000e-38 171
13 TraesCS1D01G157300 chr2B 92.975 242 14 3 352 590 43807491 43807732 2.110000e-92 350
14 TraesCS1D01G157300 chr2B 95.294 85 2 2 340 422 111482003 111482087 2.310000e-27 134
15 TraesCS1D01G157300 chr2B 96.341 82 2 1 342 422 734066280 734066361 2.310000e-27 134
16 TraesCS1D01G157300 chr7A 91.968 249 14 6 342 587 717777553 717777308 9.800000e-91 344
17 TraesCS1D01G157300 chr7A 91.270 252 18 4 341 588 249590333 249590082 1.270000e-89 340
18 TraesCS1D01G157300 chr7A 88.587 184 17 3 1 181 65031560 65031378 1.720000e-53 220
19 TraesCS1D01G157300 chr7A 88.827 179 18 2 1 178 246599522 246599699 6.200000e-53 219
20 TraesCS1D01G157300 chr7A 88.398 181 17 3 1 178 45063583 45063762 8.020000e-52 215
21 TraesCS1D01G157300 chr7A 86.364 198 22 4 1 194 243356955 243356759 1.040000e-50 211
22 TraesCS1D01G157300 chr5A 90.873 252 16 7 342 588 486747592 486747343 7.630000e-87 331
23 TraesCS1D01G157300 chr5A 89.130 184 16 3 11 191 381686471 381686653 3.700000e-55 226
24 TraesCS1D01G157300 chr5B 88.627 255 20 6 341 587 420459982 420459729 5.980000e-78 302
25 TraesCS1D01G157300 chr3D 95.930 172 6 1 425 595 12368943 12368772 1.010000e-70 278
26 TraesCS1D01G157300 chr3D 86.802 197 20 5 1 193 313821166 313820972 8.020000e-52 215
27 TraesCS1D01G157300 chr6B 86.341 205 20 6 9 206 384834215 384834012 2.230000e-52 217
28 TraesCS1D01G157300 chr6A 86.869 198 20 5 1 194 571189236 571189431 2.230000e-52 217
29 TraesCS1D01G157300 chr3A 86.735 196 20 5 1 192 55052087 55051894 2.880000e-51 213
30 TraesCS1D01G157300 chr2D 96.512 86 2 1 338 422 344349529 344349614 1.380000e-29 141
31 TraesCS1D01G157300 chr4A 91.837 98 4 4 327 422 11180461 11180556 2.310000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G157300 chr1D 221886073 221889758 3685 True 6807.000000 6807 100.000 1 3686 1 chr1D.!!$R1 3685
1 TraesCS1D01G157300 chr1B 317843634 317846646 3012 False 4649.000000 4649 94.410 640 3686 1 chr1B.!!$F2 3046
2 TraesCS1D01G157300 chr1B 643270004 643271064 1060 True 1131.000000 1131 86.181 1040 2090 1 chr1B.!!$R1 1050
3 TraesCS1D01G157300 chr1A 287541963 287544814 2851 True 1927.500000 3546 91.553 588 3174 2 chr1A.!!$R5 2586
4 TraesCS1D01G157300 chr1A 287533420 287533968 548 True 636.000000 636 87.722 1743 2296 1 chr1A.!!$R2 553
5 TraesCS1D01G157300 chr1A 287315114 287316959 1845 True 429.666667 601 94.663 2702 3686 3 chr1A.!!$R4 984

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.028505 GCGTCTATGGCGACTTCGTA 59.971 55.000 0.0 0.0 42.22 3.43 F
467 468 0.037232 GGAAACGTCTCCTCCCACTG 60.037 60.000 0.0 0.0 32.21 3.66 F
566 567 0.328258 ACCACTGCCACCTAACCATC 59.672 55.000 0.0 0.0 0.00 3.51 F
567 568 0.620556 CCACTGCCACCTAACCATCT 59.379 55.000 0.0 0.0 0.00 2.90 F
1404 1680 1.003696 GGGTCCAAGGAGTTTGAGGAG 59.996 57.143 0.0 0.0 39.21 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1404 1680 0.380733 GGCGCAAGGGCAAGTTATAC 59.619 55.000 10.83 0.0 41.24 1.47 R
1488 1764 0.519077 CCTTCAAACGAGCTGGCTTC 59.481 55.000 0.00 0.0 0.00 3.86 R
1665 1941 2.047844 CTGCTGGTCACTCGGTGG 60.048 66.667 4.52 0.0 33.87 4.61 R
2523 2826 2.354704 CCAGCCTGTAAAGATGGAACGA 60.355 50.000 0.00 0.0 32.55 3.85 R
3268 3943 0.323178 AGAACCAGAAGCATGGCAGG 60.323 55.000 0.00 0.0 44.80 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.941325 GATACGCTTTCAGTGGGAGG 58.059 55.000 0.00 0.00 0.00 4.30
20 21 1.480954 GATACGCTTTCAGTGGGAGGA 59.519 52.381 0.00 0.00 0.00 3.71
21 22 0.895530 TACGCTTTCAGTGGGAGGAG 59.104 55.000 0.00 0.00 0.00 3.69
22 23 0.832135 ACGCTTTCAGTGGGAGGAGA 60.832 55.000 0.00 0.00 0.00 3.71
23 24 0.539051 CGCTTTCAGTGGGAGGAGAT 59.461 55.000 0.00 0.00 0.00 2.75
24 25 1.741732 CGCTTTCAGTGGGAGGAGATG 60.742 57.143 0.00 0.00 0.00 2.90
25 26 1.280421 GCTTTCAGTGGGAGGAGATGT 59.720 52.381 0.00 0.00 0.00 3.06
26 27 2.290577 GCTTTCAGTGGGAGGAGATGTT 60.291 50.000 0.00 0.00 0.00 2.71
27 28 3.604582 CTTTCAGTGGGAGGAGATGTTC 58.395 50.000 0.00 0.00 0.00 3.18
40 41 5.201713 GGAGATGTTCCTGTCGATTATGA 57.798 43.478 0.00 0.00 43.16 2.15
41 42 5.226396 GGAGATGTTCCTGTCGATTATGAG 58.774 45.833 0.00 0.00 43.16 2.90
42 43 5.207110 AGATGTTCCTGTCGATTATGAGG 57.793 43.478 0.00 0.00 0.00 3.86
43 44 3.179443 TGTTCCTGTCGATTATGAGGC 57.821 47.619 0.00 0.00 0.00 4.70
44 45 2.128035 GTTCCTGTCGATTATGAGGCG 58.872 52.381 0.00 0.00 0.00 5.52
45 46 1.399714 TCCTGTCGATTATGAGGCGT 58.600 50.000 0.00 0.00 0.00 5.68
46 47 1.337071 TCCTGTCGATTATGAGGCGTC 59.663 52.381 0.00 0.00 0.00 5.19
47 48 1.338337 CCTGTCGATTATGAGGCGTCT 59.662 52.381 8.06 0.00 0.00 4.18
48 49 2.552743 CCTGTCGATTATGAGGCGTCTA 59.447 50.000 8.06 0.00 0.00 2.59
49 50 3.191581 CCTGTCGATTATGAGGCGTCTAT 59.808 47.826 8.06 2.71 0.00 1.98
50 51 4.160736 TGTCGATTATGAGGCGTCTATG 57.839 45.455 8.06 0.00 0.00 2.23
51 52 3.057526 TGTCGATTATGAGGCGTCTATGG 60.058 47.826 8.06 1.13 0.00 2.74
52 53 2.094700 TCGATTATGAGGCGTCTATGGC 60.095 50.000 8.06 0.00 0.00 4.40
53 54 2.263077 GATTATGAGGCGTCTATGGCG 58.737 52.381 8.06 0.00 39.82 5.69
54 55 1.324383 TTATGAGGCGTCTATGGCGA 58.676 50.000 8.06 0.00 39.82 5.54
55 56 0.596577 TATGAGGCGTCTATGGCGAC 59.403 55.000 8.06 0.00 39.82 5.19
57 58 3.617368 AGGCGTCTATGGCGACTT 58.383 55.556 0.00 0.00 46.72 3.01
58 59 1.437986 AGGCGTCTATGGCGACTTC 59.562 57.895 0.00 0.00 46.72 3.01
59 60 1.944676 GGCGTCTATGGCGACTTCG 60.945 63.158 0.00 0.00 43.27 3.79
60 61 1.226603 GCGTCTATGGCGACTTCGT 60.227 57.895 0.00 0.00 42.22 3.85
61 62 0.028505 GCGTCTATGGCGACTTCGTA 59.971 55.000 0.00 0.00 42.22 3.43
62 63 1.532505 GCGTCTATGGCGACTTCGTAA 60.533 52.381 0.00 0.00 42.22 3.18
63 64 2.789208 CGTCTATGGCGACTTCGTAAA 58.211 47.619 0.00 0.00 42.22 2.01
64 65 3.173599 CGTCTATGGCGACTTCGTAAAA 58.826 45.455 0.00 0.00 42.22 1.52
65 66 3.795101 CGTCTATGGCGACTTCGTAAAAT 59.205 43.478 0.00 0.00 42.22 1.82
66 67 4.085721 CGTCTATGGCGACTTCGTAAAATC 60.086 45.833 0.00 0.00 42.22 2.17
67 68 5.041940 GTCTATGGCGACTTCGTAAAATCT 58.958 41.667 0.00 0.00 42.22 2.40
68 69 5.173492 GTCTATGGCGACTTCGTAAAATCTC 59.827 44.000 0.00 0.00 42.22 2.75
69 70 3.306917 TGGCGACTTCGTAAAATCTCA 57.693 42.857 0.00 0.00 42.22 3.27
70 71 3.655486 TGGCGACTTCGTAAAATCTCAA 58.345 40.909 0.00 0.00 42.22 3.02
71 72 3.678072 TGGCGACTTCGTAAAATCTCAAG 59.322 43.478 0.00 0.00 42.22 3.02
72 73 3.924686 GGCGACTTCGTAAAATCTCAAGA 59.075 43.478 0.00 0.00 42.22 3.02
73 74 4.567159 GGCGACTTCGTAAAATCTCAAGAT 59.433 41.667 0.00 0.00 42.22 2.40
74 75 5.484958 GCGACTTCGTAAAATCTCAAGATG 58.515 41.667 0.00 0.00 42.22 2.90
75 76 5.288712 GCGACTTCGTAAAATCTCAAGATGA 59.711 40.000 0.00 0.00 42.22 2.92
76 77 6.019479 GCGACTTCGTAAAATCTCAAGATGAT 60.019 38.462 0.00 0.00 42.22 2.45
77 78 7.167635 GCGACTTCGTAAAATCTCAAGATGATA 59.832 37.037 0.00 0.00 42.22 2.15
78 79 9.186323 CGACTTCGTAAAATCTCAAGATGATAT 57.814 33.333 0.00 0.00 32.83 1.63
80 81 9.823647 ACTTCGTAAAATCTCAAGATGATATGT 57.176 29.630 0.00 0.00 34.49 2.29
82 83 8.507470 TCGTAAAATCTCAAGATGATATGTCG 57.493 34.615 0.00 0.00 34.49 4.35
83 84 7.595130 TCGTAAAATCTCAAGATGATATGTCGG 59.405 37.037 0.00 0.00 34.49 4.79
84 85 6.551385 AAAATCTCAAGATGATATGTCGGC 57.449 37.500 0.00 0.00 34.49 5.54
85 86 5.480642 AATCTCAAGATGATATGTCGGCT 57.519 39.130 0.00 0.00 34.49 5.52
86 87 4.511617 TCTCAAGATGATATGTCGGCTC 57.488 45.455 0.00 0.00 0.00 4.70
87 88 3.891366 TCTCAAGATGATATGTCGGCTCA 59.109 43.478 0.00 0.00 0.00 4.26
88 89 4.022503 TCTCAAGATGATATGTCGGCTCAG 60.023 45.833 0.00 0.00 0.00 3.35
89 90 3.638627 TCAAGATGATATGTCGGCTCAGT 59.361 43.478 0.00 0.00 0.00 3.41
90 91 3.932545 AGATGATATGTCGGCTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
91 92 3.495331 AGATGATATGTCGGCTCAGTCT 58.505 45.455 0.00 0.00 0.00 3.24
92 93 3.505680 AGATGATATGTCGGCTCAGTCTC 59.494 47.826 0.00 0.00 0.00 3.36
93 94 2.937519 TGATATGTCGGCTCAGTCTCT 58.062 47.619 0.00 0.00 0.00 3.10
94 95 2.881513 TGATATGTCGGCTCAGTCTCTC 59.118 50.000 0.00 0.00 0.00 3.20
95 96 1.300481 TATGTCGGCTCAGTCTCTCG 58.700 55.000 0.00 0.00 0.00 4.04
96 97 1.380403 ATGTCGGCTCAGTCTCTCGG 61.380 60.000 0.00 0.00 0.00 4.63
97 98 1.745864 GTCGGCTCAGTCTCTCGGA 60.746 63.158 0.00 0.00 0.00 4.55
98 99 1.450491 TCGGCTCAGTCTCTCGGAG 60.450 63.158 0.00 0.00 40.44 4.63
99 100 1.747367 CGGCTCAGTCTCTCGGAGT 60.747 63.158 4.69 0.00 39.82 3.85
100 101 1.309499 CGGCTCAGTCTCTCGGAGTT 61.309 60.000 4.69 0.00 39.82 3.01
101 102 0.172352 GGCTCAGTCTCTCGGAGTTG 59.828 60.000 4.69 0.00 39.82 3.16
102 103 0.457681 GCTCAGTCTCTCGGAGTTGC 60.458 60.000 4.69 0.00 39.82 4.17
103 104 1.173043 CTCAGTCTCTCGGAGTTGCT 58.827 55.000 4.69 0.00 34.51 3.91
104 105 1.132262 CTCAGTCTCTCGGAGTTGCTC 59.868 57.143 4.69 0.00 34.51 4.26
105 106 0.884514 CAGTCTCTCGGAGTTGCTCA 59.115 55.000 4.69 0.00 31.08 4.26
106 107 1.476085 CAGTCTCTCGGAGTTGCTCAT 59.524 52.381 4.69 0.00 31.08 2.90
107 108 2.685388 CAGTCTCTCGGAGTTGCTCATA 59.315 50.000 4.69 0.00 31.08 2.15
108 109 2.948979 AGTCTCTCGGAGTTGCTCATAG 59.051 50.000 4.69 0.00 31.08 2.23
109 110 2.034053 GTCTCTCGGAGTTGCTCATAGG 59.966 54.545 4.69 0.00 31.08 2.57
110 111 1.339610 CTCTCGGAGTTGCTCATAGGG 59.660 57.143 4.69 0.00 31.08 3.53
111 112 0.390860 CTCGGAGTTGCTCATAGGGG 59.609 60.000 0.00 0.00 31.08 4.79
112 113 0.325296 TCGGAGTTGCTCATAGGGGT 60.325 55.000 0.00 0.00 31.08 4.95
113 114 1.063492 TCGGAGTTGCTCATAGGGGTA 60.063 52.381 0.00 0.00 31.08 3.69
114 115 1.341531 CGGAGTTGCTCATAGGGGTAG 59.658 57.143 0.00 0.00 31.08 3.18
115 116 1.694696 GGAGTTGCTCATAGGGGTAGG 59.305 57.143 0.00 0.00 31.08 3.18
116 117 1.694696 GAGTTGCTCATAGGGGTAGGG 59.305 57.143 0.00 0.00 0.00 3.53
117 118 1.009675 AGTTGCTCATAGGGGTAGGGT 59.990 52.381 0.00 0.00 0.00 4.34
118 119 1.141053 GTTGCTCATAGGGGTAGGGTG 59.859 57.143 0.00 0.00 0.00 4.61
119 120 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
120 121 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
121 122 1.970226 GCTCATAGGGGTAGGGTGTGT 60.970 57.143 0.00 0.00 0.00 3.72
122 123 1.762957 CTCATAGGGGTAGGGTGTGTG 59.237 57.143 0.00 0.00 0.00 3.82
123 124 1.079825 TCATAGGGGTAGGGTGTGTGT 59.920 52.381 0.00 0.00 0.00 3.72
124 125 1.209504 CATAGGGGTAGGGTGTGTGTG 59.790 57.143 0.00 0.00 0.00 3.82
125 126 1.196104 TAGGGGTAGGGTGTGTGTGC 61.196 60.000 0.00 0.00 0.00 4.57
126 127 2.358247 GGGTAGGGTGTGTGTGCG 60.358 66.667 0.00 0.00 0.00 5.34
127 128 3.047877 GGTAGGGTGTGTGTGCGC 61.048 66.667 0.00 0.00 0.00 6.09
128 129 3.411351 GTAGGGTGTGTGTGCGCG 61.411 66.667 0.00 0.00 0.00 6.86
129 130 3.918977 TAGGGTGTGTGTGCGCGT 61.919 61.111 8.43 0.00 0.00 6.01
130 131 3.851845 TAGGGTGTGTGTGCGCGTC 62.852 63.158 8.43 0.00 0.00 5.19
132 133 3.345808 GGTGTGTGTGCGCGTCAT 61.346 61.111 8.43 0.00 0.00 3.06
133 134 2.024868 GGTGTGTGTGCGCGTCATA 61.025 57.895 8.43 1.47 0.00 2.15
134 135 1.358725 GGTGTGTGTGCGCGTCATAT 61.359 55.000 8.43 0.00 0.00 1.78
135 136 0.247262 GTGTGTGTGCGCGTCATATG 60.247 55.000 8.43 0.00 0.00 1.78
136 137 1.348250 GTGTGTGCGCGTCATATGG 59.652 57.895 8.43 0.00 0.00 2.74
137 138 1.813337 TGTGTGCGCGTCATATGGG 60.813 57.895 8.43 0.00 0.00 4.00
138 139 1.813753 GTGTGCGCGTCATATGGGT 60.814 57.895 8.43 0.00 0.00 4.51
139 140 1.813337 TGTGCGCGTCATATGGGTG 60.813 57.895 8.43 3.57 0.00 4.61
140 141 1.520564 GTGCGCGTCATATGGGTGA 60.521 57.895 8.43 0.00 0.00 4.02
141 142 1.227234 TGCGCGTCATATGGGTGAG 60.227 57.895 8.43 0.00 0.00 3.51
142 143 1.227263 GCGCGTCATATGGGTGAGT 60.227 57.895 8.43 0.00 0.00 3.41
143 144 1.490693 GCGCGTCATATGGGTGAGTG 61.491 60.000 8.43 0.00 0.00 3.51
144 145 0.179111 CGCGTCATATGGGTGAGTGT 60.179 55.000 2.13 0.00 0.00 3.55
145 146 1.066454 CGCGTCATATGGGTGAGTGTA 59.934 52.381 2.13 0.00 0.00 2.90
146 147 2.288213 CGCGTCATATGGGTGAGTGTAT 60.288 50.000 2.13 0.00 0.00 2.29
147 148 3.059884 GCGTCATATGGGTGAGTGTATG 58.940 50.000 2.13 0.00 0.00 2.39
148 149 3.059884 CGTCATATGGGTGAGTGTATGC 58.940 50.000 2.13 0.00 0.00 3.14
149 150 3.492482 CGTCATATGGGTGAGTGTATGCA 60.492 47.826 2.13 0.00 0.00 3.96
150 151 3.809832 GTCATATGGGTGAGTGTATGCAC 59.190 47.826 5.71 5.71 45.57 4.57
165 166 7.869016 GTGTATGCACGTATATATGAGTGTT 57.131 36.000 17.79 11.49 36.99 3.32
166 167 8.294341 GTGTATGCACGTATATATGAGTGTTT 57.706 34.615 17.79 11.26 36.99 2.83
167 168 8.214472 GTGTATGCACGTATATATGAGTGTTTG 58.786 37.037 17.79 0.00 36.99 2.93
168 169 7.923878 TGTATGCACGTATATATGAGTGTTTGT 59.076 33.333 17.79 8.74 36.99 2.83
169 170 6.582437 TGCACGTATATATGAGTGTTTGTG 57.418 37.500 17.79 7.31 36.99 3.33
170 171 6.103330 TGCACGTATATATGAGTGTTTGTGT 58.897 36.000 17.79 0.00 36.99 3.72
171 172 6.254804 TGCACGTATATATGAGTGTTTGTGTC 59.745 38.462 17.79 5.98 36.99 3.67
172 173 6.475727 GCACGTATATATGAGTGTTTGTGTCT 59.524 38.462 17.79 0.00 36.99 3.41
173 174 7.515215 GCACGTATATATGAGTGTTTGTGTCTG 60.515 40.741 17.79 0.00 36.99 3.51
174 175 7.488150 CACGTATATATGAGTGTTTGTGTCTGT 59.512 37.037 8.98 0.00 0.00 3.41
175 176 8.680001 ACGTATATATGAGTGTTTGTGTCTGTA 58.320 33.333 8.98 0.00 0.00 2.74
176 177 8.955002 CGTATATATGAGTGTTTGTGTCTGTAC 58.045 37.037 0.00 0.00 0.00 2.90
181 182 9.944376 ATATGAGTGTTTGTGTCTGTACTAATT 57.056 29.630 0.00 0.00 0.00 1.40
182 183 8.677148 ATGAGTGTTTGTGTCTGTACTAATTT 57.323 30.769 0.00 0.00 0.00 1.82
183 184 9.772973 ATGAGTGTTTGTGTCTGTACTAATTTA 57.227 29.630 0.00 0.00 0.00 1.40
184 185 9.602568 TGAGTGTTTGTGTCTGTACTAATTTAA 57.397 29.630 0.00 0.00 0.00 1.52
207 208 2.931512 AAAAACCAAGTGTCCACGTG 57.068 45.000 9.08 9.08 39.87 4.49
211 212 4.063529 CAAGTGTCCACGTGGCAT 57.936 55.556 30.25 13.57 37.20 4.40
212 213 2.330254 CAAGTGTCCACGTGGCATT 58.670 52.632 30.25 22.51 37.20 3.56
213 214 0.667993 CAAGTGTCCACGTGGCATTT 59.332 50.000 30.25 26.28 37.20 2.32
214 215 1.066908 CAAGTGTCCACGTGGCATTTT 59.933 47.619 30.25 22.03 37.20 1.82
215 216 0.951558 AGTGTCCACGTGGCATTTTC 59.048 50.000 30.25 16.99 36.20 2.29
216 217 0.385473 GTGTCCACGTGGCATTTTCG 60.385 55.000 30.25 3.58 34.44 3.46
217 218 1.442017 GTCCACGTGGCATTTTCGC 60.442 57.895 30.25 7.91 34.44 4.70
225 226 3.860717 GCATTTTCGCCTGCCAAC 58.139 55.556 0.00 0.00 32.15 3.77
226 227 1.290009 GCATTTTCGCCTGCCAACT 59.710 52.632 0.00 0.00 32.15 3.16
227 228 0.733909 GCATTTTCGCCTGCCAACTC 60.734 55.000 0.00 0.00 32.15 3.01
228 229 0.597568 CATTTTCGCCTGCCAACTCA 59.402 50.000 0.00 0.00 0.00 3.41
229 230 0.883833 ATTTTCGCCTGCCAACTCAG 59.116 50.000 0.00 0.00 0.00 3.35
230 231 1.795170 TTTTCGCCTGCCAACTCAGC 61.795 55.000 0.00 0.00 32.87 4.26
231 232 4.704833 TCGCCTGCCAACTCAGCC 62.705 66.667 0.00 0.00 32.87 4.85
232 233 4.711949 CGCCTGCCAACTCAGCCT 62.712 66.667 0.00 0.00 32.87 4.58
233 234 3.060615 GCCTGCCAACTCAGCCTG 61.061 66.667 0.00 0.00 32.87 4.85
234 235 2.360852 CCTGCCAACTCAGCCTGG 60.361 66.667 0.00 0.00 35.67 4.45
238 239 4.335647 CCAACTCAGCCTGGCGGT 62.336 66.667 18.24 13.02 0.00 5.68
239 240 3.052082 CAACTCAGCCTGGCGGTG 61.052 66.667 18.24 17.72 41.57 4.94
240 241 4.335647 AACTCAGCCTGGCGGTGG 62.336 66.667 21.54 16.07 40.54 4.61
251 252 4.740822 GCGGTGGGCCTGACCAAT 62.741 66.667 20.44 0.00 43.34 3.16
252 253 2.035626 CGGTGGGCCTGACCAATT 59.964 61.111 20.44 0.00 43.34 2.32
253 254 1.301623 CGGTGGGCCTGACCAATTA 59.698 57.895 20.44 0.00 43.34 1.40
254 255 1.029947 CGGTGGGCCTGACCAATTAC 61.030 60.000 20.44 0.00 43.34 1.89
255 256 0.683179 GGTGGGCCTGACCAATTACC 60.683 60.000 17.01 0.00 43.34 2.85
256 257 1.029947 GTGGGCCTGACCAATTACCG 61.030 60.000 4.53 0.00 43.34 4.02
257 258 1.301954 GGGCCTGACCAATTACCGT 59.698 57.895 0.84 0.00 42.05 4.83
258 259 0.746923 GGGCCTGACCAATTACCGTC 60.747 60.000 0.84 0.00 42.05 4.79
259 260 1.087771 GGCCTGACCAATTACCGTCG 61.088 60.000 0.00 0.00 38.86 5.12
260 261 1.087771 GCCTGACCAATTACCGTCGG 61.088 60.000 10.48 10.48 35.52 4.79
261 262 0.248289 CCTGACCAATTACCGTCGGT 59.752 55.000 22.66 22.66 40.16 4.69
262 263 1.355971 CTGACCAATTACCGTCGGTG 58.644 55.000 27.20 12.06 36.19 4.94
263 264 0.680618 TGACCAATTACCGTCGGTGT 59.319 50.000 27.20 15.42 36.19 4.16
264 265 1.070445 TGACCAATTACCGTCGGTGTT 59.930 47.619 27.20 17.67 36.19 3.32
265 266 2.145536 GACCAATTACCGTCGGTGTTT 58.854 47.619 27.20 16.35 36.19 2.83
266 267 2.549329 GACCAATTACCGTCGGTGTTTT 59.451 45.455 27.20 13.89 36.19 2.43
267 268 2.950975 ACCAATTACCGTCGGTGTTTTT 59.049 40.909 27.20 11.48 36.19 1.94
291 292 2.055100 CACCGTTAATTTTTGGTGCGG 58.945 47.619 9.00 0.00 44.69 5.69
292 293 1.682323 ACCGTTAATTTTTGGTGCGGT 59.318 42.857 0.00 0.00 44.88 5.68
293 294 2.055100 CCGTTAATTTTTGGTGCGGTG 58.945 47.619 0.00 0.00 33.87 4.94
294 295 2.287668 CCGTTAATTTTTGGTGCGGTGA 60.288 45.455 0.00 0.00 33.87 4.02
295 296 3.570559 CGTTAATTTTTGGTGCGGTGAT 58.429 40.909 0.00 0.00 0.00 3.06
296 297 3.984633 CGTTAATTTTTGGTGCGGTGATT 59.015 39.130 0.00 0.00 0.00 2.57
297 298 4.446051 CGTTAATTTTTGGTGCGGTGATTT 59.554 37.500 0.00 0.00 0.00 2.17
298 299 5.050702 CGTTAATTTTTGGTGCGGTGATTTT 60.051 36.000 0.00 0.00 0.00 1.82
299 300 6.510317 CGTTAATTTTTGGTGCGGTGATTTTT 60.510 34.615 0.00 0.00 0.00 1.94
322 323 7.945033 TTTGAGTAATTGGTGATTTTTCTGC 57.055 32.000 0.00 0.00 0.00 4.26
323 324 6.899393 TGAGTAATTGGTGATTTTTCTGCT 57.101 33.333 0.00 0.00 0.00 4.24
324 325 7.994425 TGAGTAATTGGTGATTTTTCTGCTA 57.006 32.000 0.00 0.00 0.00 3.49
325 326 8.402798 TGAGTAATTGGTGATTTTTCTGCTAA 57.597 30.769 0.00 0.00 0.00 3.09
326 327 9.023962 TGAGTAATTGGTGATTTTTCTGCTAAT 57.976 29.630 0.00 0.00 0.00 1.73
327 328 9.294030 GAGTAATTGGTGATTTTTCTGCTAATG 57.706 33.333 0.00 0.00 0.00 1.90
328 329 9.023962 AGTAATTGGTGATTTTTCTGCTAATGA 57.976 29.630 0.00 0.00 0.00 2.57
329 330 9.076596 GTAATTGGTGATTTTTCTGCTAATGAC 57.923 33.333 0.00 0.00 0.00 3.06
330 331 6.647334 TTGGTGATTTTTCTGCTAATGACA 57.353 33.333 0.00 0.00 0.00 3.58
331 332 6.012658 TGGTGATTTTTCTGCTAATGACAC 57.987 37.500 0.00 0.00 0.00 3.67
332 333 5.048083 TGGTGATTTTTCTGCTAATGACACC 60.048 40.000 0.00 0.00 42.61 4.16
333 334 5.088739 GTGATTTTTCTGCTAATGACACCG 58.911 41.667 0.00 0.00 0.00 4.94
334 335 3.552604 TTTTTCTGCTAATGACACCGC 57.447 42.857 0.00 0.00 0.00 5.68
335 336 1.448985 TTTCTGCTAATGACACCGCC 58.551 50.000 0.00 0.00 0.00 6.13
336 337 0.323302 TTCTGCTAATGACACCGCCA 59.677 50.000 0.00 0.00 0.00 5.69
337 338 0.541392 TCTGCTAATGACACCGCCAT 59.459 50.000 0.00 0.00 0.00 4.40
338 339 1.065491 TCTGCTAATGACACCGCCATT 60.065 47.619 0.00 0.00 37.86 3.16
339 340 1.064505 CTGCTAATGACACCGCCATTG 59.935 52.381 0.00 0.00 35.94 2.82
340 341 0.248621 GCTAATGACACCGCCATTGC 60.249 55.000 0.00 0.00 35.94 3.56
341 342 1.382522 CTAATGACACCGCCATTGCT 58.617 50.000 0.00 0.00 35.94 3.91
342 343 1.745087 CTAATGACACCGCCATTGCTT 59.255 47.619 0.00 0.00 35.94 3.91
343 344 0.968405 AATGACACCGCCATTGCTTT 59.032 45.000 0.00 0.00 33.41 3.51
344 345 0.968405 ATGACACCGCCATTGCTTTT 59.032 45.000 0.00 0.00 34.43 2.27
345 346 0.749649 TGACACCGCCATTGCTTTTT 59.250 45.000 0.00 0.00 34.43 1.94
368 369 6.785488 TTTTAGCATCAGTACAGACACAAG 57.215 37.500 0.00 0.00 0.00 3.16
369 370 2.693069 AGCATCAGTACAGACACAAGC 58.307 47.619 0.00 0.00 0.00 4.01
370 371 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
371 372 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
372 373 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
373 374 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
374 375 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
375 376 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
376 377 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
377 378 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
378 379 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
379 380 4.327982 ACAGACACAAGCGCTCATATAT 57.672 40.909 12.06 0.00 0.00 0.86
380 381 5.453567 ACAGACACAAGCGCTCATATATA 57.546 39.130 12.06 0.00 0.00 0.86
381 382 5.223382 ACAGACACAAGCGCTCATATATAC 58.777 41.667 12.06 0.00 0.00 1.47
382 383 4.322009 CAGACACAAGCGCTCATATATACG 59.678 45.833 12.06 0.00 0.00 3.06
390 391 3.359654 CGCTCATATATACGCGCATACA 58.640 45.455 5.73 0.00 39.11 2.29
391 392 3.177838 CGCTCATATATACGCGCATACAC 59.822 47.826 5.73 0.00 39.11 2.90
392 393 4.352039 GCTCATATATACGCGCATACACT 58.648 43.478 5.73 0.00 0.00 3.55
393 394 4.438145 GCTCATATATACGCGCATACACTC 59.562 45.833 5.73 0.00 0.00 3.51
394 395 5.554822 TCATATATACGCGCATACACTCA 57.445 39.130 5.73 0.00 0.00 3.41
395 396 6.131544 TCATATATACGCGCATACACTCAT 57.868 37.500 5.73 0.00 0.00 2.90
396 397 6.199393 TCATATATACGCGCATACACTCATC 58.801 40.000 5.73 0.00 0.00 2.92
397 398 2.065993 ATACGCGCATACACTCATCC 57.934 50.000 5.73 0.00 0.00 3.51
398 399 1.029681 TACGCGCATACACTCATCCT 58.970 50.000 5.73 0.00 0.00 3.24
399 400 1.029681 ACGCGCATACACTCATCCTA 58.970 50.000 5.73 0.00 0.00 2.94
400 401 1.613925 ACGCGCATACACTCATCCTAT 59.386 47.619 5.73 0.00 0.00 2.57
401 402 1.988467 CGCGCATACACTCATCCTATG 59.012 52.381 8.75 0.00 0.00 2.23
402 403 2.351738 CGCGCATACACTCATCCTATGA 60.352 50.000 8.75 0.00 37.76 2.15
403 404 3.653344 GCGCATACACTCATCCTATGAA 58.347 45.455 0.30 0.00 39.11 2.57
404 405 3.430218 GCGCATACACTCATCCTATGAAC 59.570 47.826 0.30 0.00 39.11 3.18
405 406 3.670523 CGCATACACTCATCCTATGAACG 59.329 47.826 0.00 0.00 39.11 3.95
406 407 3.430218 GCATACACTCATCCTATGAACGC 59.570 47.826 0.00 0.00 39.11 4.84
407 408 4.620982 CATACACTCATCCTATGAACGCA 58.379 43.478 0.00 0.00 39.11 5.24
408 409 2.893637 ACACTCATCCTATGAACGCAC 58.106 47.619 0.00 0.00 39.11 5.34
409 410 2.233676 ACACTCATCCTATGAACGCACA 59.766 45.455 0.00 0.00 39.11 4.57
410 411 2.604914 CACTCATCCTATGAACGCACAC 59.395 50.000 0.00 0.00 39.11 3.82
411 412 2.233676 ACTCATCCTATGAACGCACACA 59.766 45.455 0.00 0.00 39.11 3.72
412 413 2.604914 CTCATCCTATGAACGCACACAC 59.395 50.000 0.00 0.00 39.11 3.82
413 414 1.324435 CATCCTATGAACGCACACACG 59.676 52.381 0.00 0.00 39.50 4.49
420 421 2.279650 ACGCACACACGTACACCC 60.280 61.111 0.00 0.00 46.19 4.61
421 422 2.028484 CGCACACACGTACACCCT 59.972 61.111 0.00 0.00 0.00 4.34
422 423 2.307309 CGCACACACGTACACCCTG 61.307 63.158 0.00 0.00 0.00 4.45
423 424 1.227438 GCACACACGTACACCCTGT 60.227 57.895 0.00 0.00 0.00 4.00
424 425 1.219522 GCACACACGTACACCCTGTC 61.220 60.000 0.00 0.00 0.00 3.51
425 426 0.103390 CACACACGTACACCCTGTCA 59.897 55.000 0.00 0.00 0.00 3.58
426 427 0.103572 ACACACGTACACCCTGTCAC 59.896 55.000 0.00 0.00 0.00 3.67
427 428 0.599204 CACACGTACACCCTGTCACC 60.599 60.000 0.00 0.00 0.00 4.02
428 429 1.044231 ACACGTACACCCTGTCACCA 61.044 55.000 0.00 0.00 0.00 4.17
429 430 0.320374 CACGTACACCCTGTCACCAT 59.680 55.000 0.00 0.00 0.00 3.55
430 431 1.546923 CACGTACACCCTGTCACCATA 59.453 52.381 0.00 0.00 0.00 2.74
431 432 1.822990 ACGTACACCCTGTCACCATAG 59.177 52.381 0.00 0.00 0.00 2.23
432 433 1.136305 CGTACACCCTGTCACCATAGG 59.864 57.143 0.00 0.00 0.00 2.57
433 434 1.134491 GTACACCCTGTCACCATAGGC 60.134 57.143 0.00 0.00 32.58 3.93
434 435 1.153369 CACCCTGTCACCATAGGCG 60.153 63.158 0.00 0.00 32.58 5.52
435 436 2.203070 CCCTGTCACCATAGGCGC 60.203 66.667 0.00 0.00 32.58 6.53
436 437 2.203070 CCTGTCACCATAGGCGCC 60.203 66.667 21.89 21.89 0.00 6.53
437 438 2.735772 CCTGTCACCATAGGCGCCT 61.736 63.158 34.85 34.85 0.00 5.52
438 439 1.227380 CTGTCACCATAGGCGCCTC 60.227 63.158 36.73 17.83 0.00 4.70
439 440 2.279517 GTCACCATAGGCGCCTCG 60.280 66.667 36.73 25.26 0.00 4.63
440 441 2.758327 TCACCATAGGCGCCTCGT 60.758 61.111 36.73 24.45 0.00 4.18
441 442 2.279517 CACCATAGGCGCCTCGTC 60.280 66.667 36.73 1.08 0.00 4.20
442 443 3.900892 ACCATAGGCGCCTCGTCG 61.901 66.667 36.73 21.01 36.23 5.12
443 444 3.900892 CCATAGGCGCCTCGTCGT 61.901 66.667 36.73 11.27 36.23 4.34
444 445 2.353607 CATAGGCGCCTCGTCGTC 60.354 66.667 36.73 0.00 36.23 4.20
445 446 3.950254 ATAGGCGCCTCGTCGTCG 61.950 66.667 36.73 0.00 39.34 5.12
466 467 2.363297 GGAAACGTCTCCTCCCACT 58.637 57.895 0.00 0.00 32.21 4.00
467 468 0.037232 GGAAACGTCTCCTCCCACTG 60.037 60.000 0.00 0.00 32.21 3.66
468 469 0.966920 GAAACGTCTCCTCCCACTGA 59.033 55.000 0.00 0.00 0.00 3.41
469 470 1.343465 GAAACGTCTCCTCCCACTGAA 59.657 52.381 0.00 0.00 0.00 3.02
470 471 1.420430 AACGTCTCCTCCCACTGAAA 58.580 50.000 0.00 0.00 0.00 2.69
471 472 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
472 473 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
473 474 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
474 475 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
475 476 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
476 477 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
477 478 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
478 479 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
489 490 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
490 491 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
491 492 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
492 493 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
493 494 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
494 495 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
495 496 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
496 497 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
497 498 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
498 499 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
499 500 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
500 501 4.556699 CGCCGGAAATCCTGAAATAAATCC 60.557 45.833 5.05 0.00 0.00 3.01
501 502 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
502 503 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
503 504 5.010012 CCGGAAATCCTGAAATAAATCCAGG 59.990 44.000 0.00 0.00 46.64 4.45
514 515 9.472361 CTGAAATAAATCCAGGAATAATGCAAG 57.528 33.333 0.00 0.00 0.00 4.01
515 516 7.927629 TGAAATAAATCCAGGAATAATGCAAGC 59.072 33.333 0.00 0.00 0.00 4.01
516 517 6.982160 ATAAATCCAGGAATAATGCAAGCA 57.018 33.333 0.00 0.00 0.00 3.91
517 518 4.660789 AATCCAGGAATAATGCAAGCAC 57.339 40.909 0.00 0.00 0.00 4.40
518 519 2.378038 TCCAGGAATAATGCAAGCACC 58.622 47.619 0.00 0.00 0.00 5.01
519 520 2.101783 CCAGGAATAATGCAAGCACCA 58.898 47.619 0.00 0.00 0.00 4.17
520 521 2.100252 CCAGGAATAATGCAAGCACCAG 59.900 50.000 0.00 0.00 0.00 4.00
521 522 2.100252 CAGGAATAATGCAAGCACCAGG 59.900 50.000 0.00 0.00 0.00 4.45
522 523 2.025037 AGGAATAATGCAAGCACCAGGA 60.025 45.455 0.00 0.00 0.00 3.86
523 524 2.961062 GGAATAATGCAAGCACCAGGAT 59.039 45.455 0.00 0.00 0.00 3.24
524 525 3.385755 GGAATAATGCAAGCACCAGGATT 59.614 43.478 0.00 0.00 0.00 3.01
525 526 4.141869 GGAATAATGCAAGCACCAGGATTT 60.142 41.667 0.00 0.00 0.00 2.17
526 527 2.754946 AATGCAAGCACCAGGATTTG 57.245 45.000 0.00 0.00 0.00 2.32
527 528 1.927487 ATGCAAGCACCAGGATTTGA 58.073 45.000 0.00 0.00 0.00 2.69
528 529 1.702182 TGCAAGCACCAGGATTTGAA 58.298 45.000 0.00 0.00 0.00 2.69
529 530 1.340889 TGCAAGCACCAGGATTTGAAC 59.659 47.619 0.00 0.00 0.00 3.18
530 531 1.337167 GCAAGCACCAGGATTTGAACC 60.337 52.381 0.00 0.00 0.00 3.62
531 532 1.273327 CAAGCACCAGGATTTGAACCC 59.727 52.381 0.00 0.00 0.00 4.11
532 533 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
549 550 2.364972 CCTGATGGGTTGGGAATACC 57.635 55.000 0.00 0.00 40.81 2.73
558 559 1.688811 TGGGAATACCACTGCCACC 59.311 57.895 0.00 0.00 46.80 4.61
559 560 0.844661 TGGGAATACCACTGCCACCT 60.845 55.000 0.00 0.00 46.80 4.00
560 561 1.209621 GGGAATACCACTGCCACCTA 58.790 55.000 0.00 0.00 39.85 3.08
561 562 1.562475 GGGAATACCACTGCCACCTAA 59.438 52.381 0.00 0.00 39.85 2.69
562 563 2.640184 GGAATACCACTGCCACCTAAC 58.360 52.381 0.00 0.00 35.97 2.34
563 564 2.640184 GAATACCACTGCCACCTAACC 58.360 52.381 0.00 0.00 0.00 2.85
564 565 1.663911 ATACCACTGCCACCTAACCA 58.336 50.000 0.00 0.00 0.00 3.67
565 566 1.663911 TACCACTGCCACCTAACCAT 58.336 50.000 0.00 0.00 0.00 3.55
566 567 0.328258 ACCACTGCCACCTAACCATC 59.672 55.000 0.00 0.00 0.00 3.51
567 568 0.620556 CCACTGCCACCTAACCATCT 59.379 55.000 0.00 0.00 0.00 2.90
568 569 1.407437 CCACTGCCACCTAACCATCTC 60.407 57.143 0.00 0.00 0.00 2.75
569 570 1.278985 CACTGCCACCTAACCATCTCA 59.721 52.381 0.00 0.00 0.00 3.27
570 571 1.985159 ACTGCCACCTAACCATCTCAA 59.015 47.619 0.00 0.00 0.00 3.02
571 572 2.290323 ACTGCCACCTAACCATCTCAAC 60.290 50.000 0.00 0.00 0.00 3.18
572 573 1.004277 TGCCACCTAACCATCTCAACC 59.996 52.381 0.00 0.00 0.00 3.77
573 574 1.004277 GCCACCTAACCATCTCAACCA 59.996 52.381 0.00 0.00 0.00 3.67
574 575 2.711542 CCACCTAACCATCTCAACCAC 58.288 52.381 0.00 0.00 0.00 4.16
575 576 2.039746 CCACCTAACCATCTCAACCACA 59.960 50.000 0.00 0.00 0.00 4.17
576 577 3.338249 CACCTAACCATCTCAACCACAG 58.662 50.000 0.00 0.00 0.00 3.66
577 578 2.305927 ACCTAACCATCTCAACCACAGG 59.694 50.000 0.00 0.00 0.00 4.00
578 579 2.305927 CCTAACCATCTCAACCACAGGT 59.694 50.000 0.00 0.00 37.65 4.00
610 611 2.935849 TGACACCGCTATTGCTATTGTG 59.064 45.455 0.00 2.65 36.97 3.33
611 612 2.287915 GACACCGCTATTGCTATTGTGG 59.712 50.000 17.44 17.44 41.22 4.17
614 615 2.682856 ACCGCTATTGCTATTGTGGTTG 59.317 45.455 18.57 0.65 44.43 3.77
620 621 6.389906 GCTATTGCTATTGTGGTTGTTTTCT 58.610 36.000 0.00 0.00 36.03 2.52
621 622 6.308766 GCTATTGCTATTGTGGTTGTTTTCTG 59.691 38.462 0.00 0.00 36.03 3.02
622 623 3.976169 TGCTATTGTGGTTGTTTTCTGC 58.024 40.909 0.00 0.00 0.00 4.26
623 624 3.382865 TGCTATTGTGGTTGTTTTCTGCA 59.617 39.130 0.00 0.00 0.00 4.41
624 625 4.039004 TGCTATTGTGGTTGTTTTCTGCAT 59.961 37.500 0.00 0.00 0.00 3.96
625 626 4.990426 GCTATTGTGGTTGTTTTCTGCATT 59.010 37.500 0.00 0.00 0.00 3.56
626 627 5.466393 GCTATTGTGGTTGTTTTCTGCATTT 59.534 36.000 0.00 0.00 0.00 2.32
627 628 5.989551 ATTGTGGTTGTTTTCTGCATTTC 57.010 34.783 0.00 0.00 0.00 2.17
628 629 4.462508 TGTGGTTGTTTTCTGCATTTCA 57.537 36.364 0.00 0.00 0.00 2.69
629 630 5.021033 TGTGGTTGTTTTCTGCATTTCAT 57.979 34.783 0.00 0.00 0.00 2.57
637 638 6.289834 TGTTTTCTGCATTTCATTTCACCAT 58.710 32.000 0.00 0.00 0.00 3.55
739 742 1.067212 ACGGTCTGTTCGCTCATATCC 59.933 52.381 0.00 0.00 0.00 2.59
748 751 1.598130 GCTCATATCCACCCCGCAC 60.598 63.158 0.00 0.00 0.00 5.34
857 863 4.077184 TAACTGAGGCCGGCGTGG 62.077 66.667 28.98 20.33 42.50 4.94
904 910 1.545651 GGTGGAGCTGCTACTTTTGGT 60.546 52.381 13.97 0.00 0.00 3.67
910 916 1.472878 GCTGCTACTTTTGGTAAGGCC 59.527 52.381 0.00 0.00 37.90 5.19
1161 1437 1.217244 GCAAATTCAGCTGCCCCAG 59.783 57.895 9.47 0.00 32.18 4.45
1221 1497 3.304659 GCTTCCACATTGACGTTGTTGAT 60.305 43.478 0.00 0.00 0.00 2.57
1404 1680 1.003696 GGGTCCAAGGAGTTTGAGGAG 59.996 57.143 0.00 0.00 39.21 3.69
1456 1732 3.633986 GAGAGATAAACCCAATGCCAAGG 59.366 47.826 0.00 0.00 0.00 3.61
1559 1835 4.999950 GCATAAGGATGACATAGTTGAGGG 59.000 45.833 0.00 0.00 34.73 4.30
1665 1941 2.127609 GTGCGTGCTTGCTTCGTC 60.128 61.111 2.56 5.87 35.36 4.20
1917 2193 5.277974 CGATGTGAAGGTGAAACTCAAACAT 60.278 40.000 0.00 0.00 36.74 2.71
2227 2530 8.656849 GGTAGTATGGCGATCTTTACATATTTG 58.343 37.037 0.00 0.00 0.00 2.32
2231 2534 7.672983 ATGGCGATCTTTACATATTTGTAGG 57.327 36.000 0.00 0.00 39.43 3.18
2232 2535 5.995282 TGGCGATCTTTACATATTTGTAGGG 59.005 40.000 0.00 0.00 39.43 3.53
2523 2826 8.773645 GCCTAACAGCTAAAAACAAATCAATTT 58.226 29.630 0.00 0.00 0.00 1.82
2525 2828 9.993881 CTAACAGCTAAAAACAAATCAATTTCG 57.006 29.630 0.00 0.00 0.00 3.46
2593 2896 3.320826 GGCACATCCACCACTTTTAAACT 59.679 43.478 0.00 0.00 34.01 2.66
2730 3033 2.734755 TAACCCCTTGATGGCATGAG 57.265 50.000 3.81 2.31 0.00 2.90
2800 3103 4.123506 GAGATGTAGAACAGCTAAAGGGC 58.876 47.826 0.00 0.00 45.93 5.19
2941 3244 1.355563 CTTCATGGCATCAGCAGCG 59.644 57.895 0.00 0.00 44.61 5.18
2947 3250 2.699809 GCATCAGCAGCGTTCGAG 59.300 61.111 0.00 0.00 41.58 4.04
2971 3274 1.300971 GAGTGCACATGACATGGCGT 61.301 55.000 21.04 10.69 31.73 5.68
3021 3324 1.653151 GATTCTACCGGCTTTTCGCT 58.347 50.000 0.00 0.00 39.13 4.93
3045 3348 7.542824 GCTTTGGTAGTGTTGTTCTTTTTACAA 59.457 33.333 0.00 0.00 33.37 2.41
3139 3442 3.299503 ACTTCTCCATTTGCACCAAGTT 58.700 40.909 0.00 0.00 0.00 2.66
3155 3458 4.216902 ACCAAGTTCCCGTAGCAAAATTAC 59.783 41.667 0.00 0.00 0.00 1.89
3186 3811 7.168135 AGTCTAACACGTTAAAGGTTTTCTACG 59.832 37.037 0.00 0.00 35.34 3.51
3190 3815 5.006649 ACACGTTAAAGGTTTTCTACGTTCC 59.993 40.000 0.00 0.00 39.85 3.62
3191 3816 4.511454 ACGTTAAAGGTTTTCTACGTTCCC 59.489 41.667 0.00 0.00 38.90 3.97
3209 3834 5.238583 GTTCCCCCTATGAGTAATCGAATG 58.761 45.833 0.00 0.00 0.00 2.67
3246 3877 2.286418 GGATCCAAAACGCGATGACATC 60.286 50.000 15.93 12.47 0.00 3.06
3268 3943 8.449397 ACATCGTAATCATATACTCCTACGTTC 58.551 37.037 0.00 0.00 35.04 3.95
3320 3995 1.079750 GTGCCGAACTCCTCCTGTC 60.080 63.158 0.00 0.00 0.00 3.51
3355 4030 0.107703 GTCATCATCACCGCTGGGAA 60.108 55.000 0.00 0.00 36.97 3.97
3380 4055 2.307686 TGATACTGAGAAAACCCACCCC 59.692 50.000 0.00 0.00 0.00 4.95
3383 4058 1.289530 ACTGAGAAAACCCACCCCAAA 59.710 47.619 0.00 0.00 0.00 3.28
3386 4061 0.399376 AGAAAACCCACCCCAAACCC 60.399 55.000 0.00 0.00 0.00 4.11
3387 4062 0.399376 GAAAACCCACCCCAAACCCT 60.399 55.000 0.00 0.00 0.00 4.34
3388 4063 0.399376 AAAACCCACCCCAAACCCTC 60.399 55.000 0.00 0.00 0.00 4.30
3389 4064 1.301160 AAACCCACCCCAAACCCTCT 61.301 55.000 0.00 0.00 0.00 3.69
3390 4065 1.726192 AACCCACCCCAAACCCTCTC 61.726 60.000 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.480954 TCCTCCCACTGAAAGCGTATC 59.519 52.381 0.00 0.00 37.60 2.24
1 2 1.482593 CTCCTCCCACTGAAAGCGTAT 59.517 52.381 0.00 0.00 37.60 3.06
2 3 0.895530 CTCCTCCCACTGAAAGCGTA 59.104 55.000 0.00 0.00 37.60 4.42
3 4 0.832135 TCTCCTCCCACTGAAAGCGT 60.832 55.000 0.00 0.00 37.60 5.07
5 6 1.280421 ACATCTCCTCCCACTGAAAGC 59.720 52.381 0.00 0.00 37.60 3.51
6 7 3.604582 GAACATCTCCTCCCACTGAAAG 58.395 50.000 0.00 0.00 42.29 2.62
7 8 2.305927 GGAACATCTCCTCCCACTGAAA 59.694 50.000 0.00 0.00 41.61 2.69
8 9 1.909302 GGAACATCTCCTCCCACTGAA 59.091 52.381 0.00 0.00 41.61 3.02
9 10 1.573108 GGAACATCTCCTCCCACTGA 58.427 55.000 0.00 0.00 41.61 3.41
18 19 5.201713 TCATAATCGACAGGAACATCTCC 57.798 43.478 0.00 0.00 45.81 3.71
19 20 5.226396 CCTCATAATCGACAGGAACATCTC 58.774 45.833 0.00 0.00 0.00 2.75
20 21 4.502259 GCCTCATAATCGACAGGAACATCT 60.502 45.833 0.00 0.00 0.00 2.90
21 22 3.743396 GCCTCATAATCGACAGGAACATC 59.257 47.826 0.00 0.00 0.00 3.06
22 23 3.733337 GCCTCATAATCGACAGGAACAT 58.267 45.455 0.00 0.00 0.00 2.71
23 24 2.481276 CGCCTCATAATCGACAGGAACA 60.481 50.000 0.00 0.00 0.00 3.18
24 25 2.128035 CGCCTCATAATCGACAGGAAC 58.872 52.381 0.00 0.00 0.00 3.62
25 26 1.754803 ACGCCTCATAATCGACAGGAA 59.245 47.619 0.00 0.00 0.00 3.36
26 27 1.337071 GACGCCTCATAATCGACAGGA 59.663 52.381 0.00 0.00 0.00 3.86
27 28 1.338337 AGACGCCTCATAATCGACAGG 59.662 52.381 0.00 0.00 0.00 4.00
28 29 2.783828 AGACGCCTCATAATCGACAG 57.216 50.000 0.00 0.00 0.00 3.51
29 30 3.057526 CCATAGACGCCTCATAATCGACA 60.058 47.826 0.00 0.00 0.00 4.35
30 31 3.502920 CCATAGACGCCTCATAATCGAC 58.497 50.000 0.00 0.00 0.00 4.20
31 32 2.094700 GCCATAGACGCCTCATAATCGA 60.095 50.000 0.00 0.00 0.00 3.59
32 33 2.263077 GCCATAGACGCCTCATAATCG 58.737 52.381 0.00 0.00 0.00 3.34
33 34 2.094700 TCGCCATAGACGCCTCATAATC 60.095 50.000 0.00 0.00 0.00 1.75
34 35 1.893137 TCGCCATAGACGCCTCATAAT 59.107 47.619 0.00 0.00 0.00 1.28
35 36 1.000607 GTCGCCATAGACGCCTCATAA 60.001 52.381 0.00 0.00 0.00 1.90
36 37 0.596577 GTCGCCATAGACGCCTCATA 59.403 55.000 0.00 0.00 0.00 2.15
37 38 1.109920 AGTCGCCATAGACGCCTCAT 61.110 55.000 0.00 0.00 45.26 2.90
38 39 1.320344 AAGTCGCCATAGACGCCTCA 61.320 55.000 0.00 0.00 45.26 3.86
39 40 0.595310 GAAGTCGCCATAGACGCCTC 60.595 60.000 0.00 0.00 45.26 4.70
40 41 1.437986 GAAGTCGCCATAGACGCCT 59.562 57.895 0.00 0.00 45.26 5.52
41 42 1.944676 CGAAGTCGCCATAGACGCC 60.945 63.158 0.00 0.00 45.26 5.68
42 43 0.028505 TACGAAGTCGCCATAGACGC 59.971 55.000 0.00 0.00 43.93 5.19
43 44 2.463553 TTACGAAGTCGCCATAGACG 57.536 50.000 0.00 0.00 43.93 4.18
44 45 5.041940 AGATTTTACGAAGTCGCCATAGAC 58.958 41.667 0.00 0.00 43.93 2.59
45 46 5.163591 TGAGATTTTACGAAGTCGCCATAGA 60.164 40.000 0.00 0.00 43.93 1.98
46 47 5.041287 TGAGATTTTACGAAGTCGCCATAG 58.959 41.667 0.00 0.00 43.93 2.23
47 48 5.001237 TGAGATTTTACGAAGTCGCCATA 57.999 39.130 0.00 0.00 43.93 2.74
48 49 3.857052 TGAGATTTTACGAAGTCGCCAT 58.143 40.909 0.00 0.00 43.93 4.40
49 50 3.306917 TGAGATTTTACGAAGTCGCCA 57.693 42.857 0.00 0.00 43.93 5.69
50 51 3.924686 TCTTGAGATTTTACGAAGTCGCC 59.075 43.478 0.00 0.00 43.93 5.54
51 52 5.288712 TCATCTTGAGATTTTACGAAGTCGC 59.711 40.000 0.00 0.00 35.39 5.19
52 53 6.871044 TCATCTTGAGATTTTACGAAGTCG 57.129 37.500 0.00 0.00 35.39 4.18
54 55 9.823647 ACATATCATCTTGAGATTTTACGAAGT 57.176 29.630 0.00 0.00 37.29 3.01
56 57 8.968242 CGACATATCATCTTGAGATTTTACGAA 58.032 33.333 0.00 0.00 31.21 3.85
57 58 7.595130 CCGACATATCATCTTGAGATTTTACGA 59.405 37.037 0.00 0.00 31.21 3.43
58 59 7.620188 GCCGACATATCATCTTGAGATTTTACG 60.620 40.741 0.00 0.00 31.21 3.18
59 60 7.386299 AGCCGACATATCATCTTGAGATTTTAC 59.614 37.037 0.00 0.00 31.21 2.01
60 61 7.445121 AGCCGACATATCATCTTGAGATTTTA 58.555 34.615 0.00 0.00 31.21 1.52
61 62 6.294473 AGCCGACATATCATCTTGAGATTTT 58.706 36.000 0.00 0.00 31.21 1.82
62 63 5.862845 AGCCGACATATCATCTTGAGATTT 58.137 37.500 0.00 0.00 31.21 2.17
63 64 5.011431 TGAGCCGACATATCATCTTGAGATT 59.989 40.000 0.00 0.00 31.21 2.40
64 65 4.525874 TGAGCCGACATATCATCTTGAGAT 59.474 41.667 0.00 0.00 34.56 2.75
65 66 3.891366 TGAGCCGACATATCATCTTGAGA 59.109 43.478 0.00 0.00 0.00 3.27
66 67 4.236147 CTGAGCCGACATATCATCTTGAG 58.764 47.826 0.00 0.00 0.00 3.02
67 68 3.638627 ACTGAGCCGACATATCATCTTGA 59.361 43.478 0.00 0.00 0.00 3.02
68 69 3.986572 GACTGAGCCGACATATCATCTTG 59.013 47.826 0.00 0.00 0.00 3.02
69 70 3.894427 AGACTGAGCCGACATATCATCTT 59.106 43.478 0.00 0.00 0.00 2.40
70 71 3.495331 AGACTGAGCCGACATATCATCT 58.505 45.455 0.00 0.00 0.00 2.90
71 72 3.505680 AGAGACTGAGCCGACATATCATC 59.494 47.826 0.00 0.00 0.00 2.92
72 73 3.495331 AGAGACTGAGCCGACATATCAT 58.505 45.455 0.00 0.00 0.00 2.45
73 74 2.881513 GAGAGACTGAGCCGACATATCA 59.118 50.000 0.00 0.00 0.00 2.15
74 75 2.095969 CGAGAGACTGAGCCGACATATC 60.096 54.545 0.00 0.00 0.00 1.63
75 76 1.876799 CGAGAGACTGAGCCGACATAT 59.123 52.381 0.00 0.00 0.00 1.78
76 77 1.300481 CGAGAGACTGAGCCGACATA 58.700 55.000 0.00 0.00 0.00 2.29
77 78 1.380403 CCGAGAGACTGAGCCGACAT 61.380 60.000 0.00 0.00 0.00 3.06
78 79 2.041115 CCGAGAGACTGAGCCGACA 61.041 63.158 0.00 0.00 0.00 4.35
79 80 1.711060 CTCCGAGAGACTGAGCCGAC 61.711 65.000 0.00 0.00 0.00 4.79
80 81 1.450491 CTCCGAGAGACTGAGCCGA 60.450 63.158 0.00 0.00 0.00 5.54
81 82 1.309499 AACTCCGAGAGACTGAGCCG 61.309 60.000 1.33 0.00 34.02 5.52
82 83 0.172352 CAACTCCGAGAGACTGAGCC 59.828 60.000 1.33 0.00 34.02 4.70
83 84 0.457681 GCAACTCCGAGAGACTGAGC 60.458 60.000 1.33 1.77 34.02 4.26
84 85 1.132262 GAGCAACTCCGAGAGACTGAG 59.868 57.143 1.33 0.00 36.23 3.35
85 86 1.169577 GAGCAACTCCGAGAGACTGA 58.830 55.000 1.33 0.00 33.32 3.41
86 87 0.884514 TGAGCAACTCCGAGAGACTG 59.115 55.000 1.33 5.91 33.32 3.51
87 88 1.846007 ATGAGCAACTCCGAGAGACT 58.154 50.000 1.33 0.00 33.32 3.24
88 89 2.034053 CCTATGAGCAACTCCGAGAGAC 59.966 54.545 1.33 0.00 33.32 3.36
89 90 2.302260 CCTATGAGCAACTCCGAGAGA 58.698 52.381 1.33 0.00 33.32 3.10
90 91 1.339610 CCCTATGAGCAACTCCGAGAG 59.660 57.143 1.33 0.00 35.52 3.20
91 92 1.403814 CCCTATGAGCAACTCCGAGA 58.596 55.000 1.33 0.00 0.00 4.04
92 93 0.390860 CCCCTATGAGCAACTCCGAG 59.609 60.000 0.00 0.00 0.00 4.63
93 94 0.325296 ACCCCTATGAGCAACTCCGA 60.325 55.000 0.00 0.00 0.00 4.55
94 95 1.341531 CTACCCCTATGAGCAACTCCG 59.658 57.143 0.00 0.00 0.00 4.63
95 96 1.694696 CCTACCCCTATGAGCAACTCC 59.305 57.143 0.00 0.00 0.00 3.85
96 97 1.694696 CCCTACCCCTATGAGCAACTC 59.305 57.143 0.00 0.00 0.00 3.01
97 98 1.009675 ACCCTACCCCTATGAGCAACT 59.990 52.381 0.00 0.00 0.00 3.16
98 99 1.141053 CACCCTACCCCTATGAGCAAC 59.859 57.143 0.00 0.00 0.00 4.17
99 100 1.274184 ACACCCTACCCCTATGAGCAA 60.274 52.381 0.00 0.00 0.00 3.91
100 101 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
101 102 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
102 103 1.762957 CACACACCCTACCCCTATGAG 59.237 57.143 0.00 0.00 0.00 2.90
103 104 1.079825 ACACACACCCTACCCCTATGA 59.920 52.381 0.00 0.00 0.00 2.15
104 105 1.209504 CACACACACCCTACCCCTATG 59.790 57.143 0.00 0.00 0.00 2.23
105 106 1.580059 CACACACACCCTACCCCTAT 58.420 55.000 0.00 0.00 0.00 2.57
106 107 1.196104 GCACACACACCCTACCCCTA 61.196 60.000 0.00 0.00 0.00 3.53
107 108 2.526046 GCACACACACCCTACCCCT 61.526 63.158 0.00 0.00 0.00 4.79
108 109 2.033602 GCACACACACCCTACCCC 59.966 66.667 0.00 0.00 0.00 4.95
109 110 2.358247 CGCACACACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
110 111 3.047877 GCGCACACACACCCTACC 61.048 66.667 0.30 0.00 0.00 3.18
111 112 3.411351 CGCGCACACACACCCTAC 61.411 66.667 8.75 0.00 0.00 3.18
112 113 3.851845 GACGCGCACACACACCCTA 62.852 63.158 5.73 0.00 0.00 3.53
115 116 1.358725 ATATGACGCGCACACACACC 61.359 55.000 5.73 0.00 0.00 4.16
116 117 0.247262 CATATGACGCGCACACACAC 60.247 55.000 5.73 0.00 0.00 3.82
117 118 1.357991 CCATATGACGCGCACACACA 61.358 55.000 5.73 0.00 0.00 3.72
118 119 1.348250 CCATATGACGCGCACACAC 59.652 57.895 5.73 0.00 0.00 3.82
119 120 1.813337 CCCATATGACGCGCACACA 60.813 57.895 5.73 4.20 0.00 3.72
120 121 1.813753 ACCCATATGACGCGCACAC 60.814 57.895 5.73 0.00 0.00 3.82
121 122 1.813337 CACCCATATGACGCGCACA 60.813 57.895 5.73 7.67 0.00 4.57
122 123 1.490693 CTCACCCATATGACGCGCAC 61.491 60.000 5.73 0.41 0.00 5.34
123 124 1.227234 CTCACCCATATGACGCGCA 60.227 57.895 5.73 5.73 0.00 6.09
124 125 1.227263 ACTCACCCATATGACGCGC 60.227 57.895 5.73 0.00 0.00 6.86
125 126 0.179111 ACACTCACCCATATGACGCG 60.179 55.000 3.53 3.53 0.00 6.01
126 127 2.882927 TACACTCACCCATATGACGC 57.117 50.000 3.65 0.00 0.00 5.19
127 128 3.059884 GCATACACTCACCCATATGACG 58.940 50.000 3.65 0.00 0.00 4.35
128 129 3.809832 GTGCATACACTCACCCATATGAC 59.190 47.826 3.65 0.00 43.85 3.06
129 130 3.492482 CGTGCATACACTCACCCATATGA 60.492 47.826 3.65 0.00 45.10 2.15
130 131 2.802247 CGTGCATACACTCACCCATATG 59.198 50.000 0.00 0.00 45.10 1.78
131 132 2.434336 ACGTGCATACACTCACCCATAT 59.566 45.455 0.00 0.00 45.10 1.78
132 133 1.828595 ACGTGCATACACTCACCCATA 59.171 47.619 0.00 0.00 45.10 2.74
133 134 0.613260 ACGTGCATACACTCACCCAT 59.387 50.000 0.00 0.00 45.10 4.00
134 135 1.258676 TACGTGCATACACTCACCCA 58.741 50.000 0.00 0.00 45.10 4.51
135 136 2.596904 ATACGTGCATACACTCACCC 57.403 50.000 0.00 0.00 45.10 4.61
136 137 6.617879 TCATATATACGTGCATACACTCACC 58.382 40.000 0.00 0.00 45.10 4.02
137 138 7.271438 CACTCATATATACGTGCATACACTCAC 59.729 40.741 0.00 0.00 45.10 3.51
138 139 7.040686 ACACTCATATATACGTGCATACACTCA 60.041 37.037 0.00 0.00 45.10 3.41
139 140 7.306213 ACACTCATATATACGTGCATACACTC 58.694 38.462 0.00 0.00 45.10 3.51
140 141 7.215719 ACACTCATATATACGTGCATACACT 57.784 36.000 0.00 0.00 45.10 3.55
141 142 7.869016 AACACTCATATATACGTGCATACAC 57.131 36.000 0.00 0.00 43.76 2.90
142 143 7.923878 ACAAACACTCATATATACGTGCATACA 59.076 33.333 0.00 0.00 0.00 2.29
143 144 8.214472 CACAAACACTCATATATACGTGCATAC 58.786 37.037 0.00 0.00 0.00 2.39
144 145 7.923878 ACACAAACACTCATATATACGTGCATA 59.076 33.333 0.00 0.00 0.00 3.14
145 146 6.761242 ACACAAACACTCATATATACGTGCAT 59.239 34.615 0.00 0.00 0.00 3.96
146 147 6.103330 ACACAAACACTCATATATACGTGCA 58.897 36.000 0.00 0.00 0.00 4.57
147 148 6.475727 AGACACAAACACTCATATATACGTGC 59.524 38.462 0.00 0.00 0.00 5.34
148 149 7.488150 ACAGACACAAACACTCATATATACGTG 59.512 37.037 0.00 10.44 0.00 4.49
149 150 7.544622 ACAGACACAAACACTCATATATACGT 58.455 34.615 0.00 0.00 0.00 3.57
150 151 7.987268 ACAGACACAAACACTCATATATACG 57.013 36.000 0.00 0.00 0.00 3.06
155 156 9.944376 AATTAGTACAGACACAAACACTCATAT 57.056 29.630 0.00 0.00 0.00 1.78
156 157 9.772973 AAATTAGTACAGACACAAACACTCATA 57.227 29.630 0.00 0.00 0.00 2.15
157 158 8.677148 AAATTAGTACAGACACAAACACTCAT 57.323 30.769 0.00 0.00 0.00 2.90
158 159 9.602568 TTAAATTAGTACAGACACAAACACTCA 57.397 29.630 0.00 0.00 0.00 3.41
188 189 1.474879 CCACGTGGACACTTGGTTTTT 59.525 47.619 31.31 0.00 43.40 1.94
189 190 1.099689 CCACGTGGACACTTGGTTTT 58.900 50.000 31.31 0.00 43.40 2.43
190 191 2.788515 CCACGTGGACACTTGGTTT 58.211 52.632 31.31 0.00 43.40 3.27
191 192 4.551729 CCACGTGGACACTTGGTT 57.448 55.556 31.31 0.00 43.40 3.67
194 195 0.667993 AAATGCCACGTGGACACTTG 59.332 50.000 38.30 10.19 37.39 3.16
195 196 1.336755 GAAAATGCCACGTGGACACTT 59.663 47.619 38.30 25.74 37.39 3.16
196 197 0.951558 GAAAATGCCACGTGGACACT 59.048 50.000 38.30 21.60 37.39 3.55
197 198 0.385473 CGAAAATGCCACGTGGACAC 60.385 55.000 38.30 20.66 37.39 3.67
198 199 1.945522 CGAAAATGCCACGTGGACA 59.054 52.632 38.30 31.46 37.39 4.02
199 200 1.442017 GCGAAAATGCCACGTGGAC 60.442 57.895 38.30 27.17 37.39 4.02
200 201 2.950673 GCGAAAATGCCACGTGGA 59.049 55.556 38.30 22.50 37.39 4.02
208 209 0.733909 GAGTTGGCAGGCGAAAATGC 60.734 55.000 0.00 0.00 41.80 3.56
209 210 0.597568 TGAGTTGGCAGGCGAAAATG 59.402 50.000 0.00 0.00 0.00 2.32
210 211 0.883833 CTGAGTTGGCAGGCGAAAAT 59.116 50.000 0.00 0.00 32.26 1.82
211 212 1.795170 GCTGAGTTGGCAGGCGAAAA 61.795 55.000 0.00 0.00 36.41 2.29
212 213 2.260869 GCTGAGTTGGCAGGCGAAA 61.261 57.895 0.00 0.00 36.41 3.46
213 214 2.669569 GCTGAGTTGGCAGGCGAA 60.670 61.111 0.00 0.00 36.41 4.70
217 218 2.360852 CCAGGCTGAGTTGGCAGG 60.361 66.667 17.94 0.00 36.41 4.85
221 222 4.335647 ACCGCCAGGCTGAGTTGG 62.336 66.667 17.94 13.74 42.76 3.77
222 223 3.052082 CACCGCCAGGCTGAGTTG 61.052 66.667 17.94 4.55 42.76 3.16
223 224 4.335647 CCACCGCCAGGCTGAGTT 62.336 66.667 17.94 0.00 42.76 3.01
234 235 2.830186 TAATTGGTCAGGCCCACCGC 62.830 60.000 15.29 0.00 42.76 5.68
235 236 1.029947 GTAATTGGTCAGGCCCACCG 61.030 60.000 15.29 0.00 42.76 4.94
236 237 0.683179 GGTAATTGGTCAGGCCCACC 60.683 60.000 13.76 13.76 33.14 4.61
237 238 1.029947 CGGTAATTGGTCAGGCCCAC 61.030 60.000 0.00 0.00 33.14 4.61
238 239 1.301623 CGGTAATTGGTCAGGCCCA 59.698 57.895 0.00 0.00 36.04 5.36
239 240 0.746923 GACGGTAATTGGTCAGGCCC 60.747 60.000 0.00 0.00 36.04 5.80
240 241 1.087771 CGACGGTAATTGGTCAGGCC 61.088 60.000 0.00 0.00 32.74 5.19
241 242 1.087771 CCGACGGTAATTGGTCAGGC 61.088 60.000 5.48 0.00 32.74 4.85
242 243 0.248289 ACCGACGGTAATTGGTCAGG 59.752 55.000 20.23 9.49 32.11 3.86
243 244 1.337447 ACACCGACGGTAATTGGTCAG 60.337 52.381 21.25 6.43 33.69 3.51
244 245 0.680618 ACACCGACGGTAATTGGTCA 59.319 50.000 21.25 0.00 33.69 4.02
245 246 1.799544 AACACCGACGGTAATTGGTC 58.200 50.000 21.25 0.00 33.69 4.02
246 247 2.259266 AAACACCGACGGTAATTGGT 57.741 45.000 21.25 10.35 36.74 3.67
247 248 3.629438 AAAAACACCGACGGTAATTGG 57.371 42.857 21.25 9.62 32.11 3.16
272 273 1.682323 ACCGCACCAAAAATTAACGGT 59.318 42.857 0.00 0.00 46.74 4.83
273 274 2.055100 CACCGCACCAAAAATTAACGG 58.945 47.619 0.00 0.00 44.49 4.44
274 275 3.001395 TCACCGCACCAAAAATTAACG 57.999 42.857 0.00 0.00 0.00 3.18
275 276 5.915812 AAATCACCGCACCAAAAATTAAC 57.084 34.783 0.00 0.00 0.00 2.01
276 277 6.927294 AAAAATCACCGCACCAAAAATTAA 57.073 29.167 0.00 0.00 0.00 1.40
296 297 8.825745 GCAGAAAAATCACCAATTACTCAAAAA 58.174 29.630 0.00 0.00 0.00 1.94
297 298 8.203485 AGCAGAAAAATCACCAATTACTCAAAA 58.797 29.630 0.00 0.00 0.00 2.44
298 299 7.725251 AGCAGAAAAATCACCAATTACTCAAA 58.275 30.769 0.00 0.00 0.00 2.69
299 300 7.288810 AGCAGAAAAATCACCAATTACTCAA 57.711 32.000 0.00 0.00 0.00 3.02
300 301 6.899393 AGCAGAAAAATCACCAATTACTCA 57.101 33.333 0.00 0.00 0.00 3.41
301 302 9.294030 CATTAGCAGAAAAATCACCAATTACTC 57.706 33.333 0.00 0.00 0.00 2.59
302 303 9.023962 TCATTAGCAGAAAAATCACCAATTACT 57.976 29.630 0.00 0.00 0.00 2.24
303 304 9.076596 GTCATTAGCAGAAAAATCACCAATTAC 57.923 33.333 0.00 0.00 0.00 1.89
304 305 8.801299 TGTCATTAGCAGAAAAATCACCAATTA 58.199 29.630 0.00 0.00 0.00 1.40
305 306 7.599998 GTGTCATTAGCAGAAAAATCACCAATT 59.400 33.333 0.00 0.00 0.00 2.32
306 307 7.092716 GTGTCATTAGCAGAAAAATCACCAAT 58.907 34.615 0.00 0.00 0.00 3.16
307 308 6.446318 GTGTCATTAGCAGAAAAATCACCAA 58.554 36.000 0.00 0.00 0.00 3.67
308 309 5.048083 GGTGTCATTAGCAGAAAAATCACCA 60.048 40.000 0.00 0.00 40.54 4.17
309 310 5.402398 GGTGTCATTAGCAGAAAAATCACC 58.598 41.667 0.00 0.00 35.61 4.02
310 311 5.088739 CGGTGTCATTAGCAGAAAAATCAC 58.911 41.667 0.00 0.00 0.00 3.06
311 312 4.379394 GCGGTGTCATTAGCAGAAAAATCA 60.379 41.667 0.00 0.00 0.00 2.57
312 313 4.098416 GCGGTGTCATTAGCAGAAAAATC 58.902 43.478 0.00 0.00 0.00 2.17
313 314 3.119495 GGCGGTGTCATTAGCAGAAAAAT 60.119 43.478 0.00 0.00 0.00 1.82
314 315 2.227865 GGCGGTGTCATTAGCAGAAAAA 59.772 45.455 0.00 0.00 0.00 1.94
315 316 1.810151 GGCGGTGTCATTAGCAGAAAA 59.190 47.619 0.00 0.00 0.00 2.29
316 317 1.271108 TGGCGGTGTCATTAGCAGAAA 60.271 47.619 0.00 0.00 0.00 2.52
317 318 0.323302 TGGCGGTGTCATTAGCAGAA 59.677 50.000 0.00 0.00 0.00 3.02
318 319 0.541392 ATGGCGGTGTCATTAGCAGA 59.459 50.000 0.00 0.00 0.00 4.26
319 320 1.064505 CAATGGCGGTGTCATTAGCAG 59.935 52.381 0.00 0.00 35.55 4.24
320 321 1.093972 CAATGGCGGTGTCATTAGCA 58.906 50.000 0.00 0.00 35.55 3.49
321 322 0.248621 GCAATGGCGGTGTCATTAGC 60.249 55.000 0.00 0.55 35.55 3.09
322 323 3.924238 GCAATGGCGGTGTCATTAG 57.076 52.632 0.00 0.00 35.55 1.73
344 345 6.293407 GCTTGTGTCTGTACTGATGCTAAAAA 60.293 38.462 5.69 0.00 0.00 1.94
345 346 5.179368 GCTTGTGTCTGTACTGATGCTAAAA 59.821 40.000 5.69 0.00 0.00 1.52
346 347 4.690748 GCTTGTGTCTGTACTGATGCTAAA 59.309 41.667 5.69 0.00 0.00 1.85
347 348 4.245660 GCTTGTGTCTGTACTGATGCTAA 58.754 43.478 5.69 0.07 0.00 3.09
348 349 3.673323 CGCTTGTGTCTGTACTGATGCTA 60.673 47.826 5.69 0.00 0.00 3.49
349 350 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
350 351 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
351 352 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
352 353 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
353 354 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
354 355 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
355 356 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
356 357 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
357 358 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
358 359 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
359 360 4.322009 CGTATATATGAGCGCTTGTGTCTG 59.678 45.833 13.26 0.00 0.00 3.51
360 361 4.476862 CGTATATATGAGCGCTTGTGTCT 58.523 43.478 13.26 0.00 0.00 3.41
361 362 3.059570 GCGTATATATGAGCGCTTGTGTC 59.940 47.826 13.26 0.00 45.48 3.67
362 363 2.987149 GCGTATATATGAGCGCTTGTGT 59.013 45.455 13.26 4.27 45.48 3.72
363 364 2.026860 CGCGTATATATGAGCGCTTGTG 59.973 50.000 13.26 6.56 46.56 3.33
364 365 2.251040 CGCGTATATATGAGCGCTTGT 58.749 47.619 13.26 5.98 46.56 3.16
365 366 2.959586 CGCGTATATATGAGCGCTTG 57.040 50.000 13.26 7.35 46.56 4.01
370 371 4.352039 AGTGTATGCGCGTATATATGAGC 58.648 43.478 19.79 20.14 38.31 4.26
371 372 5.569413 TGAGTGTATGCGCGTATATATGAG 58.431 41.667 19.79 3.76 0.00 2.90
372 373 5.554822 TGAGTGTATGCGCGTATATATGA 57.445 39.130 19.79 3.29 0.00 2.15
373 374 5.399596 GGATGAGTGTATGCGCGTATATATG 59.600 44.000 19.79 0.00 0.00 1.78
374 375 5.299531 AGGATGAGTGTATGCGCGTATATAT 59.700 40.000 19.79 9.03 0.00 0.86
375 376 4.638865 AGGATGAGTGTATGCGCGTATATA 59.361 41.667 19.79 14.59 0.00 0.86
376 377 3.444034 AGGATGAGTGTATGCGCGTATAT 59.556 43.478 19.79 4.31 0.00 0.86
377 378 2.817844 AGGATGAGTGTATGCGCGTATA 59.182 45.455 13.13 13.13 0.00 1.47
378 379 1.613925 AGGATGAGTGTATGCGCGTAT 59.386 47.619 15.52 15.52 0.00 3.06
379 380 1.029681 AGGATGAGTGTATGCGCGTA 58.970 50.000 8.43 4.92 0.00 4.42
380 381 1.029681 TAGGATGAGTGTATGCGCGT 58.970 50.000 8.43 7.55 0.00 6.01
381 382 1.988467 CATAGGATGAGTGTATGCGCG 59.012 52.381 0.00 0.00 0.00 6.86
382 383 3.303881 TCATAGGATGAGTGTATGCGC 57.696 47.619 0.00 0.00 33.59 6.09
383 384 3.670523 CGTTCATAGGATGAGTGTATGCG 59.329 47.826 0.00 0.00 40.94 4.73
384 385 3.430218 GCGTTCATAGGATGAGTGTATGC 59.570 47.826 0.00 0.00 40.94 3.14
385 386 4.445718 GTGCGTTCATAGGATGAGTGTATG 59.554 45.833 0.00 0.00 40.94 2.39
386 387 4.099419 TGTGCGTTCATAGGATGAGTGTAT 59.901 41.667 0.00 0.00 40.94 2.29
387 388 3.445805 TGTGCGTTCATAGGATGAGTGTA 59.554 43.478 0.00 0.00 40.94 2.90
388 389 2.233676 TGTGCGTTCATAGGATGAGTGT 59.766 45.455 0.00 0.00 40.94 3.55
389 390 2.604914 GTGTGCGTTCATAGGATGAGTG 59.395 50.000 0.00 0.00 40.94 3.51
390 391 2.233676 TGTGTGCGTTCATAGGATGAGT 59.766 45.455 0.00 0.00 40.94 3.41
391 392 2.604914 GTGTGTGCGTTCATAGGATGAG 59.395 50.000 0.00 0.00 40.94 2.90
392 393 2.616960 GTGTGTGCGTTCATAGGATGA 58.383 47.619 0.00 0.00 37.55 2.92
393 394 1.324435 CGTGTGTGCGTTCATAGGATG 59.676 52.381 0.00 0.00 0.00 3.51
394 395 1.067142 ACGTGTGTGCGTTCATAGGAT 60.067 47.619 0.00 0.00 43.04 3.24
395 396 0.315886 ACGTGTGTGCGTTCATAGGA 59.684 50.000 0.00 0.00 43.04 2.94
396 397 1.652124 GTACGTGTGTGCGTTCATAGG 59.348 52.381 0.00 0.00 43.04 2.57
397 398 2.090041 GTGTACGTGTGTGCGTTCATAG 59.910 50.000 0.00 0.00 43.04 2.23
398 399 2.052891 GTGTACGTGTGTGCGTTCATA 58.947 47.619 0.00 0.00 43.04 2.15
399 400 0.856641 GTGTACGTGTGTGCGTTCAT 59.143 50.000 0.00 0.00 43.04 2.57
400 401 1.146957 GGTGTACGTGTGTGCGTTCA 61.147 55.000 0.00 0.00 43.04 3.18
401 402 1.561250 GGTGTACGTGTGTGCGTTC 59.439 57.895 0.00 0.00 43.04 3.95
402 403 1.884004 GGGTGTACGTGTGTGCGTT 60.884 57.895 0.00 0.00 43.04 4.84
404 405 2.028484 AGGGTGTACGTGTGTGCG 59.972 61.111 0.00 0.00 32.77 5.34
405 406 1.227438 ACAGGGTGTACGTGTGTGC 60.227 57.895 0.00 0.00 45.70 4.57
410 411 1.743391 TGGTGACAGGGTGTACGTG 59.257 57.895 0.00 0.00 40.69 4.49
411 412 4.281102 TGGTGACAGGGTGTACGT 57.719 55.556 0.00 0.00 35.01 3.57
419 420 2.650813 GAGGCGCCTATGGTGACAGG 62.651 65.000 32.97 0.00 45.07 4.00
420 421 1.227380 GAGGCGCCTATGGTGACAG 60.227 63.158 32.97 0.00 45.07 3.51
421 422 2.900273 GAGGCGCCTATGGTGACA 59.100 61.111 32.97 0.00 45.07 3.58
422 423 2.279517 CGAGGCGCCTATGGTGAC 60.280 66.667 32.97 14.51 42.50 3.67
423 424 2.758327 ACGAGGCGCCTATGGTGA 60.758 61.111 32.97 0.00 34.74 4.02
424 425 2.279517 GACGAGGCGCCTATGGTG 60.280 66.667 32.97 18.94 36.10 4.17
425 426 3.900892 CGACGAGGCGCCTATGGT 61.901 66.667 32.97 26.91 0.00 3.55
426 427 3.825833 GACGACGAGGCGCCTATGG 62.826 68.421 32.97 23.64 33.86 2.74
427 428 2.353607 GACGACGAGGCGCCTATG 60.354 66.667 32.97 27.02 33.86 2.23
447 448 1.080025 GTGGGAGGAGACGTTTCCG 60.080 63.158 18.59 0.00 42.29 4.30
448 449 0.037232 CAGTGGGAGGAGACGTTTCC 60.037 60.000 17.16 17.16 37.52 3.13
449 450 0.966920 TCAGTGGGAGGAGACGTTTC 59.033 55.000 0.00 0.00 0.00 2.78
450 451 1.420430 TTCAGTGGGAGGAGACGTTT 58.580 50.000 0.00 0.00 0.00 3.60
451 452 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
452 453 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
453 454 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
454 455 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
455 456 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
456 457 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
457 458 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
458 459 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
459 460 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
460 461 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
461 462 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
472 473 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
473 474 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
474 475 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
475 476 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
476 477 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
477 478 4.537015 GATTTATTTCAGGATTTCCGGCG 58.463 43.478 0.00 0.00 42.08 6.46
478 479 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
479 480 6.076981 CTGGATTTATTTCAGGATTTCCGG 57.923 41.667 0.00 0.00 42.08 5.14
487 488 7.954835 TGCATTATTCCTGGATTTATTTCAGG 58.045 34.615 0.00 0.00 46.91 3.86
488 489 9.472361 CTTGCATTATTCCTGGATTTATTTCAG 57.528 33.333 0.00 0.00 0.00 3.02
489 490 7.927629 GCTTGCATTATTCCTGGATTTATTTCA 59.072 33.333 0.00 0.00 0.00 2.69
490 491 7.927629 TGCTTGCATTATTCCTGGATTTATTTC 59.072 33.333 0.00 0.00 0.00 2.17
491 492 7.712205 GTGCTTGCATTATTCCTGGATTTATTT 59.288 33.333 0.00 0.00 0.00 1.40
492 493 7.212274 GTGCTTGCATTATTCCTGGATTTATT 58.788 34.615 0.00 0.00 0.00 1.40
493 494 6.239402 GGTGCTTGCATTATTCCTGGATTTAT 60.239 38.462 0.00 0.00 0.00 1.40
494 495 5.068987 GGTGCTTGCATTATTCCTGGATTTA 59.931 40.000 0.00 0.00 0.00 1.40
495 496 4.141869 GGTGCTTGCATTATTCCTGGATTT 60.142 41.667 0.00 0.00 0.00 2.17
496 497 3.385755 GGTGCTTGCATTATTCCTGGATT 59.614 43.478 0.00 0.00 0.00 3.01
497 498 2.961062 GGTGCTTGCATTATTCCTGGAT 59.039 45.455 0.00 0.00 0.00 3.41
498 499 2.291475 TGGTGCTTGCATTATTCCTGGA 60.291 45.455 0.00 0.00 0.00 3.86
499 500 2.100252 CTGGTGCTTGCATTATTCCTGG 59.900 50.000 0.00 0.00 0.00 4.45
500 501 2.100252 CCTGGTGCTTGCATTATTCCTG 59.900 50.000 0.00 0.00 0.00 3.86
501 502 2.025037 TCCTGGTGCTTGCATTATTCCT 60.025 45.455 0.00 0.00 0.00 3.36
502 503 2.378038 TCCTGGTGCTTGCATTATTCC 58.622 47.619 0.00 0.00 0.00 3.01
503 504 4.660789 AATCCTGGTGCTTGCATTATTC 57.339 40.909 0.00 0.00 0.00 1.75
504 505 4.467082 TCAAATCCTGGTGCTTGCATTATT 59.533 37.500 0.00 0.00 0.00 1.40
505 506 4.025360 TCAAATCCTGGTGCTTGCATTAT 58.975 39.130 0.00 0.00 0.00 1.28
506 507 3.429492 TCAAATCCTGGTGCTTGCATTA 58.571 40.909 0.00 0.00 0.00 1.90
507 508 2.250031 TCAAATCCTGGTGCTTGCATT 58.750 42.857 0.00 0.00 0.00 3.56
508 509 1.927487 TCAAATCCTGGTGCTTGCAT 58.073 45.000 0.00 0.00 0.00 3.96
509 510 1.340889 GTTCAAATCCTGGTGCTTGCA 59.659 47.619 0.00 0.00 0.00 4.08
510 511 1.337167 GGTTCAAATCCTGGTGCTTGC 60.337 52.381 0.00 0.00 0.00 4.01
511 512 1.273327 GGGTTCAAATCCTGGTGCTTG 59.727 52.381 0.00 0.00 0.00 4.01
512 513 1.147817 AGGGTTCAAATCCTGGTGCTT 59.852 47.619 0.00 0.00 38.36 3.91
513 514 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
514 515 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
530 531 1.568597 TGGTATTCCCAACCCATCAGG 59.431 52.381 0.00 0.00 41.50 3.86
540 541 0.844661 AGGTGGCAGTGGTATTCCCA 60.845 55.000 0.00 0.00 42.51 4.37
541 542 1.209621 TAGGTGGCAGTGGTATTCCC 58.790 55.000 0.00 0.00 0.00 3.97
542 543 2.640184 GTTAGGTGGCAGTGGTATTCC 58.360 52.381 0.00 0.00 0.00 3.01
543 544 2.026636 TGGTTAGGTGGCAGTGGTATTC 60.027 50.000 0.00 0.00 0.00 1.75
544 545 1.989586 TGGTTAGGTGGCAGTGGTATT 59.010 47.619 0.00 0.00 0.00 1.89
545 546 1.663911 TGGTTAGGTGGCAGTGGTAT 58.336 50.000 0.00 0.00 0.00 2.73
546 547 1.557832 GATGGTTAGGTGGCAGTGGTA 59.442 52.381 0.00 0.00 0.00 3.25
547 548 0.328258 GATGGTTAGGTGGCAGTGGT 59.672 55.000 0.00 0.00 0.00 4.16
548 549 0.620556 AGATGGTTAGGTGGCAGTGG 59.379 55.000 0.00 0.00 0.00 4.00
549 550 1.278985 TGAGATGGTTAGGTGGCAGTG 59.721 52.381 0.00 0.00 0.00 3.66
550 551 1.656587 TGAGATGGTTAGGTGGCAGT 58.343 50.000 0.00 0.00 0.00 4.40
551 552 2.359900 GTTGAGATGGTTAGGTGGCAG 58.640 52.381 0.00 0.00 0.00 4.85
552 553 1.004277 GGTTGAGATGGTTAGGTGGCA 59.996 52.381 0.00 0.00 0.00 4.92
553 554 1.004277 TGGTTGAGATGGTTAGGTGGC 59.996 52.381 0.00 0.00 0.00 5.01
554 555 2.039746 TGTGGTTGAGATGGTTAGGTGG 59.960 50.000 0.00 0.00 0.00 4.61
555 556 3.338249 CTGTGGTTGAGATGGTTAGGTG 58.662 50.000 0.00 0.00 0.00 4.00
556 557 2.305927 CCTGTGGTTGAGATGGTTAGGT 59.694 50.000 0.00 0.00 0.00 3.08
557 558 2.305927 ACCTGTGGTTGAGATGGTTAGG 59.694 50.000 0.00 0.00 27.29 2.69
558 559 3.703001 ACCTGTGGTTGAGATGGTTAG 57.297 47.619 0.00 0.00 27.29 2.34
570 571 1.541147 CATTGCGAATCAACCTGTGGT 59.459 47.619 0.00 0.00 37.53 4.16
571 572 1.811965 TCATTGCGAATCAACCTGTGG 59.188 47.619 0.00 0.00 37.53 4.17
572 573 2.226200 TGTCATTGCGAATCAACCTGTG 59.774 45.455 0.00 0.00 37.53 3.66
573 574 2.226437 GTGTCATTGCGAATCAACCTGT 59.774 45.455 0.00 0.00 37.53 4.00
574 575 2.414559 GGTGTCATTGCGAATCAACCTG 60.415 50.000 0.00 0.00 37.53 4.00
575 576 1.812571 GGTGTCATTGCGAATCAACCT 59.187 47.619 0.00 0.00 37.53 3.50
576 577 1.465689 CGGTGTCATTGCGAATCAACC 60.466 52.381 0.00 0.00 37.53 3.77
577 578 1.882198 CGGTGTCATTGCGAATCAAC 58.118 50.000 0.00 0.00 37.53 3.18
578 579 0.167908 GCGGTGTCATTGCGAATCAA 59.832 50.000 0.00 0.00 39.32 2.57
579 580 0.673333 AGCGGTGTCATTGCGAATCA 60.673 50.000 0.00 0.00 0.00 2.57
580 581 1.286501 TAGCGGTGTCATTGCGAATC 58.713 50.000 0.00 0.00 0.00 2.52
581 582 1.953559 ATAGCGGTGTCATTGCGAAT 58.046 45.000 0.00 0.00 0.00 3.34
582 583 1.396648 CAATAGCGGTGTCATTGCGAA 59.603 47.619 0.00 0.00 0.00 4.70
583 584 1.006086 CAATAGCGGTGTCATTGCGA 58.994 50.000 0.00 0.00 0.00 5.10
584 585 0.589729 GCAATAGCGGTGTCATTGCG 60.590 55.000 15.42 0.00 43.44 4.85
585 586 3.240684 GCAATAGCGGTGTCATTGC 57.759 52.632 15.42 15.42 45.32 3.56
604 605 6.577103 TGAAATGCAGAAAACAACCACAATA 58.423 32.000 0.00 0.00 0.00 1.90
605 606 5.426504 TGAAATGCAGAAAACAACCACAAT 58.573 33.333 0.00 0.00 0.00 2.71
606 607 4.825422 TGAAATGCAGAAAACAACCACAA 58.175 34.783 0.00 0.00 0.00 3.33
610 611 6.421405 GTGAAATGAAATGCAGAAAACAACC 58.579 36.000 0.00 0.00 0.00 3.77
611 612 6.036953 TGGTGAAATGAAATGCAGAAAACAAC 59.963 34.615 0.00 0.00 0.00 3.32
614 615 6.424509 TGATGGTGAAATGAAATGCAGAAAAC 59.575 34.615 0.00 0.00 0.00 2.43
620 621 3.367190 CGGTGATGGTGAAATGAAATGCA 60.367 43.478 0.00 0.00 0.00 3.96
621 622 3.181397 CGGTGATGGTGAAATGAAATGC 58.819 45.455 0.00 0.00 0.00 3.56
622 623 3.193267 ACCGGTGATGGTGAAATGAAATG 59.807 43.478 6.12 0.00 41.85 2.32
623 624 3.430453 ACCGGTGATGGTGAAATGAAAT 58.570 40.909 6.12 0.00 41.85 2.17
624 625 2.817258 GACCGGTGATGGTGAAATGAAA 59.183 45.455 14.63 0.00 44.01 2.69
625 626 2.432444 GACCGGTGATGGTGAAATGAA 58.568 47.619 14.63 0.00 44.01 2.57
626 627 1.339631 GGACCGGTGATGGTGAAATGA 60.340 52.381 14.63 0.00 44.01 2.57
627 628 1.094785 GGACCGGTGATGGTGAAATG 58.905 55.000 14.63 0.00 44.01 2.32
628 629 0.991920 AGGACCGGTGATGGTGAAAT 59.008 50.000 14.63 0.00 44.01 2.17
629 630 0.323629 GAGGACCGGTGATGGTGAAA 59.676 55.000 14.63 0.00 44.01 2.69
637 638 2.675423 CGACAGGAGGACCGGTGA 60.675 66.667 14.63 0.00 44.03 4.02
766 769 0.954452 GTTGAGGCAAAGGTGGAGTG 59.046 55.000 0.00 0.00 0.00 3.51
857 863 3.202706 GCCGATCGGGGAAGTTGC 61.203 66.667 33.98 14.22 35.78 4.17
887 893 3.010420 CCTTACCAAAAGTAGCAGCTCC 58.990 50.000 0.00 0.00 30.92 4.70
923 929 6.923508 TGTAATCAAGAGTTGTGTGTCTGTAG 59.076 38.462 0.00 0.00 0.00 2.74
924 930 6.700081 GTGTAATCAAGAGTTGTGTGTCTGTA 59.300 38.462 0.00 0.00 0.00 2.74
928 1204 4.743151 TCGTGTAATCAAGAGTTGTGTGTC 59.257 41.667 0.00 0.00 0.00 3.67
1071 1347 0.737715 GCGAGCGGAAGACATGAAGT 60.738 55.000 0.00 0.00 0.00 3.01
1078 1354 0.948678 ATAGAGAGCGAGCGGAAGAC 59.051 55.000 0.00 0.00 0.00 3.01
1161 1437 1.078143 ATCGGAGCAAGGCAAGGTC 60.078 57.895 0.50 0.50 0.00 3.85
1365 1641 1.065854 CCCCTGTCCAGCTTGTAGAAG 60.066 57.143 0.00 0.00 0.00 2.85
1404 1680 0.380733 GGCGCAAGGGCAAGTTATAC 59.619 55.000 10.83 0.00 41.24 1.47
1456 1732 2.064762 CTTCTCGCAATCGGATGGATC 58.935 52.381 0.00 0.00 33.02 3.36
1488 1764 0.519077 CCTTCAAACGAGCTGGCTTC 59.481 55.000 0.00 0.00 0.00 3.86
1559 1835 2.579738 GCACTCGGTCCCTCTTCC 59.420 66.667 0.00 0.00 0.00 3.46
1665 1941 2.047844 CTGCTGGTCACTCGGTGG 60.048 66.667 4.52 0.00 33.87 4.61
1917 2193 5.724854 ACATACCTTTGTTAGCTTCCTCCTA 59.275 40.000 0.00 0.00 0.00 2.94
2187 2489 5.475564 GCCATACTACCAGGTTTTCAGAAAA 59.524 40.000 4.06 4.06 0.00 2.29
2227 2530 5.650543 CCAAAATAACAACATGAGCCCTAC 58.349 41.667 0.00 0.00 0.00 3.18
2231 2534 3.924144 TGCCAAAATAACAACATGAGCC 58.076 40.909 0.00 0.00 0.00 4.70
2232 2535 4.143052 GCTTGCCAAAATAACAACATGAGC 60.143 41.667 0.00 0.00 0.00 4.26
2379 2682 8.876303 ACTGCTATATGAGATAAGATGAGTGA 57.124 34.615 0.00 0.00 0.00 3.41
2487 2790 6.588719 TTTAGCTGTTAGGCATCATTGTTT 57.411 33.333 0.00 0.00 34.17 2.83
2523 2826 2.354704 CCAGCCTGTAAAGATGGAACGA 60.355 50.000 0.00 0.00 32.55 3.85
2525 2828 3.350219 TCCAGCCTGTAAAGATGGAAC 57.650 47.619 4.74 0.00 37.12 3.62
2664 2967 2.811317 CGAGACTCACCGCCTTGC 60.811 66.667 2.82 0.00 0.00 4.01
2667 2970 3.374402 CACCGAGACTCACCGCCT 61.374 66.667 2.82 0.00 0.00 5.52
2730 3033 2.496291 GGATCCTGCAGCATTGGGC 61.496 63.158 8.66 0.00 45.30 5.36
2800 3103 2.022195 CTGAAACAGGATGCCCAGATG 58.978 52.381 0.00 0.00 42.53 2.90
2941 3244 1.795768 TGTGCACTCCAATCTCGAAC 58.204 50.000 19.41 0.00 0.00 3.95
2947 3250 2.098607 CCATGTCATGTGCACTCCAATC 59.901 50.000 19.41 4.58 0.00 2.67
2971 3274 2.571653 AGCACAGGCATCTACCAAACTA 59.428 45.455 0.00 0.00 44.61 2.24
3021 3324 9.575783 GATTGTAAAAAGAACAACACTACCAAA 57.424 29.630 0.00 0.00 39.51 3.28
3045 3348 2.028658 TCTGAACTTGAGCAAGCGAGAT 60.029 45.455 9.99 0.00 41.99 2.75
3107 3410 5.166398 CAAATGGAGAAGTTCATTCCAAGC 58.834 41.667 15.63 0.00 43.69 4.01
3139 3442 5.250200 ACTCAATGTAATTTTGCTACGGGA 58.750 37.500 0.00 0.00 31.22 5.14
3155 3458 6.780706 ACCTTTAACGTGTTAGACTCAATG 57.219 37.500 0.00 0.00 0.00 2.82
3174 3480 2.060275 AGGGGGAACGTAGAAAACCTT 58.940 47.619 0.00 0.00 0.00 3.50
3176 3482 3.198417 TCATAGGGGGAACGTAGAAAACC 59.802 47.826 0.00 0.00 0.00 3.27
3186 3811 4.950205 TTCGATTACTCATAGGGGGAAC 57.050 45.455 0.00 0.00 0.00 3.62
3190 3815 7.661437 TGAAAATCATTCGATTACTCATAGGGG 59.339 37.037 0.00 0.00 41.12 4.79
3191 3816 8.607441 TGAAAATCATTCGATTACTCATAGGG 57.393 34.615 0.00 0.00 41.12 3.53
3209 3834 9.358872 GTTTTGGATCCTACAAGATTGAAAATC 57.641 33.333 14.23 0.00 0.00 2.17
3246 3877 7.242079 CAGGAACGTAGGAGTATATGATTACG 58.758 42.308 0.00 0.88 39.59 3.18
3261 3892 1.009829 GAAGCATGGCAGGAACGTAG 58.990 55.000 1.99 0.00 0.00 3.51
3268 3943 0.323178 AGAACCAGAAGCATGGCAGG 60.323 55.000 0.00 0.00 44.80 4.85
3320 3995 6.820152 TGATGATGACTGACTGGAAAATACAG 59.180 38.462 0.00 0.00 41.64 2.74
3355 4030 4.505039 GGTGGGTTTTCTCAGTATCACAGT 60.505 45.833 0.00 0.00 0.00 3.55
3380 4055 1.368374 TGTTAGGGGGAGAGGGTTTG 58.632 55.000 0.00 0.00 0.00 2.93
3383 4058 1.369403 GTTTGTTAGGGGGAGAGGGT 58.631 55.000 0.00 0.00 0.00 4.34
3386 4061 1.702957 TGGTGTTTGTTAGGGGGAGAG 59.297 52.381 0.00 0.00 0.00 3.20
3387 4062 1.422402 GTGGTGTTTGTTAGGGGGAGA 59.578 52.381 0.00 0.00 0.00 3.71
3388 4063 1.423921 AGTGGTGTTTGTTAGGGGGAG 59.576 52.381 0.00 0.00 0.00 4.30
3389 4064 1.422402 GAGTGGTGTTTGTTAGGGGGA 59.578 52.381 0.00 0.00 0.00 4.81
3390 4065 1.546998 GGAGTGGTGTTTGTTAGGGGG 60.547 57.143 0.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.