>input_sequence_45374
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---------------------------------------------------------------------------ATGCC
ACTTCGGCACATGCTTCTCCAAGCGCGGCAGCGCTGGTCTCAGCCGCCTCCACGGCTCTCCGAGCTACTTCATGTCTTCC
GCTCGCTCTCTATTCTACCATCCGGAGCCTCGGCCACGCCACCCTGCCGCTCTCCTACGCAAATTCAGCTGCCCCAGACC
TTGCCTTGCTCCGATGCCAACCCACTTGGCGTGGGCTTCCACATTGACGTTGTTGATGACGACCTCTGGCCCGCTTCCTT
CGGCTTCTCCTCGGATCCCACGCCGGGTGACCAGTGTCTTGATACCTTCCAAGAACATGGAGAAGAACACATGCACGATT
CGGATGATGAGATAGATGACATGAGGCACCGCAAGCAGCTCTTCTACAAGCTGGACAGGGGGTCCAAGGAGTTTGAGGAG
TATAACTTGCCCTTGCGCCGCAGATGGAAGAGAGATAAACCCAATGCCAAGGATCCATCCGATTGCGAGAAGGTGGAACC
TGAGAAGCCAGCTCGTTTGAAGGTCCCAAAGCTGAAAGCAGAGCCTGCAGTGCATAAGGATGACATAGTTGAGGGGAAGA
GGGACCGAGTGCCAACTTTTAACCAGATGACTGATCCTTACCACCACCCTTTCTGCCTGGACATACATGTCTCCAAGGGG
TCGGTGCGTGCTTGCTTCGTCCACCGAGTGACCAGCAGGGTTGTGTCGGTCGCTCACTCCATATCAAAGGACATGAAGTT
TGATCTGGGTTCAAGGAAGGGCATCAAGGCATGTGTGGCGGTTGGGGCGTTACTTGCGAAGCGTGCGATAGAGGATGATA
TTCACAATGCAATTTATACACCTAGAAAAGGGGACAAAATCGAAGGAAAAATTGAGGTTGTGTTGCGTGGAATAATTGAG
AATGGAGTCGATGTGAAGGTGAAACTCAAACATAGGAGGAAGCTAACAAAGGTATGTCATGATTATTTATTATTCTATTT
CCCTTGTT-TGATGATGCCTTTGAATTTTCTAATATACAGTA-----------------TATTTTAATCTTCTCAGCACA
TAACATGTGGAAGTAATTTGAAAATATTTGGTTGATACCA--CGTGTGAATTTATATAGAGCAGAACTAATCTATGGGTT
CTTG------GGAAACTACATAGAAACATCTCTGTAGTGTATGTTTTATTTTTGCAGTGAAGTTATATTATTCACGTAGA
CAAGAGTATTTTCTGAAA-ACCTGGTAGTATGGCGATCTTTACATATTTGTAGGGCTCATGTTGTTATTTTGGCAAGCTG
TTAGAAGCAAAGATACTTTAGTTTTTCTTTGGAATGAACAAGTTCATCATGTTGTTTGCCATTTGAAAATGTTTCAGCAC
AGAGAAGCAAAATCTTCAGGACGTTGTGGTATTAAAACCATTCACTCATCTTATCTCATATAGCAGTATGTATGCAATAT
TGCAGTGCAGTGCAGTGGGACTCTGGTATTTTCACGAGCCTGTCTGTCTTAGTTAAAAACGTTTGGTTTAAACAATGATG
CCTAACAGCTAAAAACAAATCAATTTCGTTCCATCTTTACAGGCTGGATCAATTAGAGCTGAAATCCCATGATGGCACAT
CCACCACTTTTAAACTCTACTGTTGTAACAAACAATGCTTGACCTCACTGTTTTGACCTTCACTTGCAGAATGCGCCGGT
GGTGCAGCAAGGCGGTGAGTCTCGGTGA----------------------------------------------------
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>chr1D_1_TraesCS1D01G157300
GATACGCTTTCAGTGGGAGGAGATGTTCCTGTCGATTATGAGGCGTCTATGGCGACTTCGTAAAATCTCAAGATGATATG
TCGGCTCAGTCTCTCGGAGTTGCTCATAGGGGTAGGGTGTGTGTGCGCGTCATATGGGTGAGTGTATGCACGTATATATG
AGTGTTTGTGTCTGTACTAATTTAAATAAAAAACCAAGTGTCCACGTGGCATTTTCGCCTGCCAACTCAGCCTGGCGGTG
GGCCTGACCAATTACCGTCGGTGTTTTTTGTCACCGTTAATTTTTGGTGCGGTGATTTTTTGAGTAATTGGTGATTTTTC
TGCTAATGACACCGCCATTGCTTTTTTTTAGCATCAGTACAGACACAAGCGCTCATATATACGCGCATACACTCATCCTA
TGAACGCACACACGTACACCCTGTCACCATAGGCGCCTCGTCGTCGACGGAAACGTCTCCTCCCACTGAAAGCGCATCGC
CGGAAATCCTGAAATAAATCCAGGAATAATGCAAGCACCAGGATTTGAACCCTGATGGGTTGGGAATACCACTGCCACCT
AACCATCTCAACCACAGGTTGATTCGCAATGACACCGCTATTGCTATTGTGGTTGTTTTCTGCATTTCATTTCACCATCA
CCGGTCCTCCTGTCGCCGGCGTGTTTCCTC-CGCGGC-AACTCCTCCGCCCCACTGGTCGGCCGGCGAGCACGCCACTGC
TACGGTCTGTTCGCTCATATCCACCCCGCACCGGCGGCTCCCAGATCCCACTCCACCTTTGCCTCAACCTTGCA---AGC
TCTGCAGAGCGACTCGAATAGTTGAACTAAGCGGCGCCGGCAGAGTAACTGAGGCCGGCGTGGCAACTTCCCCGATCGGC
CGTCCCGCCGGTGGAGCTGCTACTTTTGGTAAGGCCCCCATCCCCCCTCTACA---------------------------
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---GACACACAACTCTTGATTACACGAGAAACAGAACGCTTCTCTAACCAGCACGCCCGTAGGGTGCTTGCGCAAATGCC
ACTTCGGCACATGCTTCTCCAAGCGCGGCAGCGCTGGTCTCAGCCGCCTCCACGGCTCTCCGAGCTACTTCATGTCTTCC
GCTCGCTCTCTATTCTACCATCCGGAGCCTCGGCCACGCCACCCTGCCGCTCTCCTACGCAAATTCAGCTGCCCCAGACC
TTGCCTTGCTCCGATGCCAACCCACTTGGCGTGGGCTTCCACATTGACGTTGTTGATGACGACCTCTGGCCCGCTTCCTT
CGGCTTCTCCTCGGATCCCACGCCGGGTGACCAGTGTCTTGATACCTTCCAAGAACATGGAGAAGAACACATGCACGATT
CGGATGATGAGATAGATGACATGAGGCACCGCAAGCAGCTCTTCTACAAGCTGGACAGGGGGTCCAAGGAGTTTGAGGAG
TATAACTTGCCCTTGCGCCGCAGATGGAAGAGAGATAAACCCAATGCCAAGGATCCATCCGATTGCGAGAAGGTGGAACC
TGAGAAGCCAGCTCGTTTGAAGGTCCCAAAGCTGAAAGCAGAGCCTGCAGTGCATAAGGATGACATAGTTGAGGGGAAGA
GGGACCGAGTGCCAACTTTTAACCAGATGACTGATCCTTACCACCACCCTTTCTGCCTGGACATACATGTCTCCAAGGGG
TCGGTGCGTGCTTGCTTCGTCCACCGAGTGACCAGCAGGGTTGTGTCGGTCGCTCACTCCATATCAAAGGACATGAAGTT
TGATCTGGGTTCAAGGAAGGGCATCAAGGCATGTGTGGCGGTTGGGGCGTTACTTGCGAAGCGTGCGATAGAGGATGATA
TTCACAATGCAATTTATACACCTAGAAAAGGGGACAAAATCGAAGGAAAAATTGAGGTTGTGTTGCGTGGAATAATTGAG
AATGGAGTCGATGTGAAGGTGAAACTCAAACATAGGAGGAAGCTAACAAAGGTATGTCATGATTATTTATTATTCTATTT
CCCTTGTT-TGATGATGCCTTTGAATTTTCTAATATACAGTA-----------------TATTTTAATCTTCTCAGCACA
TAACATGTGGAAGTAATTTGAAAATATTTGGTTGATACCA--CGTGTGAATTTATATAGAGCAGAACTAATCTATGGGTT
CTTG------GGAAACTACATAGAAACATCTCTGTAGTGTATGTTTTATTTTTGCAGTGAAGTTATATTATTCACGTAGA
CAAGAGTATTTTCTGAAA-ACCTGGTAGTATGGCGATCTTTACATATTTGTAGGGCTCATGTTGTTATTTTGGCAAGCTG
TTAGAAGCAAAGATACTTTAGTTTTTCTTTGGAATGAACAAGTTCATCATGTTGTTTGCCATTTGAAAATGTTTCAGCAC
AGAGAAGCAAAATCTTCAGGACGTTGTGGTATTAAAACCATTCACTCATCTTATCTCATATAGCAGTATGTATGCAATAT
TGCAGTGCAGTGCAGTGGGACTCTGGTATTTTCACGAGCCTGTCTGTCTTAGTTAAAAACGTTTGGTTTAAACAATGATG
CCTAACAGCTAAAAACAAATCAATTTCGTTCCATCTTTACAGGCTGGATCAATTAGAGCTGAAATCCCATGATGGCACAT
CCACCACTTTTAAACTCTACTGTTGTAACAAACAATGCTTGACCTCACTGTTTTGACCTTCACTTGCAGAATGCGCCGGT
GGTGCAGCAAGGCGGTGAGTCTCGGTGACAGCTCAACGGTTGGCCAGCATATATAACCCCTTGATGGCATGAGCCCAATG
CTGCAGGATCCATTTTATGTCATCTCGGAAGACAAACCATGAGATGTAGAACAGCTAAAGGGCATCTGGGCATCCTGTTT
CAGATCTTAGCATTTGTGCCCCCAGGAACTCGCTGCTCTGCCTCGCTGTCTATACTCTGCAGTTTGTGACAAGCCTCCAG
TTCCATGTGTCTTGTCTTTGGCCTGCTTCATGGCATCAGCAGCGTTCGAGATTGGAGTGCACATGACATGGCGTAGTTTG
GTAGATGCCTGTGCTTTGTGGTAGGATTCTACCGGCTTTTCGCTTTGGTAGTGTTGTTCTTTTTACAATCTCGCTTGCTC
AAGTTCAGAGATGTAACTGAGATCCCGGGCTGTATCTGACTTTTTTCTAGCTTGGAATGAACTTCTCCATTTGCACCAAG
TTCCCGTAGCAAAATTACATTG---AGTCTAACACGTTAAAGGTTTTCTAC-----------------------------
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--------------------------------------------------GTTCCCCCTATGAGTAATCGAATGATTTTC
AATCTT------GTAGGATCCAAAACGCGATGACATCGTAATCATATACTCC----------------------------
----------------TACGTTCCTGCCATGCTTCTGGTTCTGAAGCGAAATGTTTGTGCCGAACTCCTCCTGTCTGTAT
TTTCCAGTCAGTCATCATCACCGCTGGGAACTGTGATACTGAGAAAACCCACCCCAAACCCTCTCCCCCTAACAAACACC
ACT-CCATGCCGCTCCGCACGCTGCTCCGGCACCTCGCGGCTGGCCAGTTCGCGCGCCTGCAGGCGCTCACGGGCGCGGC
CACGGCGCCGGCCGCGCACCGCGTCCTCCACCTCCTCCTCCGCACCGCGCCGGCCCCTCCCCTCCCCCACCTCGTCTCCC
TCGCGCGC------------------------------------------------------------------------
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-----------------------------------------------TGGTCCCGCTCCCACTTCCGCGCGCCTCTCCCG
CTCCGGCTCCACGCGCTGCTGCTGGCCCGCCTCGCCTCCCACGGCCTCCACCCGCTGCTCCGCTCCGAGCTCCACGCCCT
>chr1A_588
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---------------------------AATGACACCGCTATTGCGGGTGTTTTTTTTTTCGTTTCAC---TTCACCACCA
CCGGTCCTCCTGTCGCCGGCGTGTTTCCTCCCGCGGCAAACTCCCCCGCTCCACTGGTCGGCCGGCGAGCACGCCACTGC
TACGGTCTGTTCGCTCATATCTACCCCGCATCGGCGGCTCCCAGATCCTACTCCACCTTTGCTTTATCCAAACCCTGAGC
TCTGCGGAGCGACTCCAACAGTCGAACTAAGCAGCGCCGGCAGAGTAACCGAGGCCGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCACACACAACTCTTGATTACACCAGAGACAGAGCGCTTCTCCAACGAGCACGCCCCTAGGGTGCTTGCGCAAATGCC
ACTTCGGCACATGCTTCTCCAAGCGCGGCAGCGCTGGTCTCAGCAGCCTCCGCAGCTCTCCGAGCTCCTGCATATCTTCC
GCTCGCTCTCTATTCTACCATCCGGAGCCTCTGCCGCGCCATCCAACCGCTCTCCTAGGCAAATTCAGCTGCCCCAAACC
TTGCCTTGCTCCAATGCCAACCCACTTGGCGCCGGCTTCCACATCGACGTTGTTGACGATGACCTCTGGCCCACTTCCTT
CGGCTTCTCCTCAGATCCCATGACTGGTGATGAGTGTCTTGATACCTTCCAAGAACACGGAGAAGAACAAGTGCACGACT
CGGATGATGAGATAGATGACATGAGGCACCGCAAGCAGCTGTTCTACAAGCTGGACAGGGGGTCCAAGGAGTTTGAGGAA
TATAACTTGCCCTTGCGCCGCAGATGGAAGAGAGATAAACCCAATGCCAAGAATCCATCCGATTGCGAGAAGGTGGAACC
TGACAAGCCAGCTCGTTTGAAGGTCCCAAAGCTGAAAGAAGAGCCTGCAGTGCATAAGGATGACATAGTTGAGGTGAAGA
GGGACCGAGTGCCAACTTTTAACCAGATGACTGATCCTTACCACCACCCTTTCTGCCTCGACATACATGTCTCCAAGGGG
TCAGTGCGTGCTTGCTTCGTTCACCGAGTGACCAGCAGGGTTGTGTCGGTTGCTCACTCCATATCAAAGGACATGAAGTT
TGATCTGGGTTCAAGGAAGGGCATCAAGGCATGTGTGGCGGTTGGGGCATTACTTGCGAAGCGTGCAATAGAGGATGATA
TTCACAATGCAATTTATACTCCTAGAAAAGGGGACAAAATCGAAGGAAAAATTGAGGTTGTGTTGCGTGGAATAATTGAG
AATGGAGTCGATGTGAAGGTGAAACTCAAACAAAGGAGGAAGCTAACAAAGGTATGTCATGATTATTTATTATTCTATTT
CCCTTGTT-TGATGATGCCTTTGAATTTTCTAATATACAATA-----------------TATTTTAATCTTCTCAGCACA
TTACATGTGGAAGTAATTTGAAAATATTTGGTTGGTACCAAGTGTGTGAATTTATATGGAGCAGAACTAACCTATGGGTT
CTTG------GGAAACTACATAGAAACATCCCTGTAGTGTATGTTTTATTTTTGCAGTGAAGTTGTATTATTCACGTAGA
CAAGAGTACTTTCTGAAA-ACCTGGTAGTAGGGCGATCTTTACATATTTATAGATCTCATGTTGTTATTTTGGCAAGCTG
TTAGAAGCAAAGATACTTTAGTTTTTCTTCGGAATGAACAAGTTCATCATGTTGTTTGCTATTTGAAAATGTTTCACCAC
AGAGAAGCAAAATCTTCAGGACGTTGTGGTATTAAAACCATGCACTCATCTTATCTCATATAGCAGTATGTATGCAATAT
TGCAGTGCAGTGCAGTGGGACTCTGGTATTTTCACGAGCCTGTCTGTCTTAGTTAAAAACATTTGGTTTGAACAATGATG
CCTAACAGCTAAAAACAAATCAATTCCATTCCATCTTTACAGGCTGGATCAACTAGAGCTGAAATCCCATGATGGCACAC
CCACCACTTTTAAACGCTACTGTTGTAACAAACAATGCTTGACCTCACTGTTTTGACCTTCACTTGCAGAATGCGCCGGT
GGTGCAACAGGGTGGTGAGTCTCGGTGACAACTCAACGGTTGGCCAGCATATATAACCCCTTGATGGCATGAACCCAATG
CTGCAGGATCCATTTTATGTCTTCTCGGAAGACAAACCATGAGATGTAGAACAGCTAAAGGGTAT--------TCTGTTT
CAGATCTTAGCATTTGTGCCCCCAGGAACTCGCTGCTCTGCCTCGCTGTCTATACTCTGCAGTTTGTGACAAGCCTCCAG
TTCTATGTGTCTTGTCTTTGACCTGCTTCATGGCATCAGCAGCATTCGAAATTGGAGTGCACATGACATGGCACAGTTTG
GTAGATGCCTGTGCTTTGTGGTAGGATTCTGCCGGCTTTTGGCCTTGGTAGAATTGTTCTTTTTACATTCTCGCTTGCTC
AAGTTCAGAGATGTAACTGAGATCCCGGGCTGTATCTGACTTTTTTCTCTCTTGGAATGAACTTCTCCATTTGCACCAAG
T-CCCGTAGCAAAATTATATTG---AGTCTAACACGTTA-----------------------------------------
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>chr1B_640
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-------------------------------------------------------------------------------A
CTGGTCCTCCGCTCGCCGGCGTGTTTCCTCCCGCGGC-AACTCCTCCGCCCCACTGGTCGGCCGGCGAGCACGCCACTTC
TACGGTCTGTTCGCTCATATTTACCCTC---------------------ACCCCACCTTTGCCTCAACCTTGCA---AGC
TCTGCAAAGCGACTCGAATAGTTGAACTAAGCGGCGCCGGCAGAGTAACTGAGGTCGGCGTGCCAACTTCCCCGATCGGC
CGTCCCGCCGGT-GAGCTGCTACTTTTGG-AAGGCTCCCATCCCCCCTACACA---------------------------
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---CACACACAACTCTTGATTACACGAGAAACGGAACACTTCTCTAACCAGCACGCCCGTAGGGTGCTTGCGCAAATGCC
ACTTCGGCACATGCTTCTCCAAGCGCGGCAGCGCTGGCCTCAGCCGCCTCCAAAGCTCTCCCAGCTCCTGCATATCTTCC
GCTCGCTCTCTATTCTACCATCTGGAGCCTCGGCCACACCGCCCTGCCACTCTCGTGCGCAAATTCAGCTGCCCCAAACC
TTGCCTTGCTCCGATGCCAACCCACTTGGCGCGGGCTTCCACATTGACGTTGTTGACAACGACCTCTGGCCCGCTTCCTT
CGGCTTCTCCTCGGATCCCACGCCGGGTGACCAATGTCTTGATACCTTCCAAGAACATGGAGAAGAACACATGCACGATT
CGGATGATGAGATAGATGACATGAGGCACCGCAAGCAGCTGTTCTACAAGCTGGACAGGGGGTCCAAGGAGTTTGAGGAA
TATAACTTGCCCTTGCGCCGCAGATGGAAGAGAGATAAACCCAATGCCAATAATCCATCCGATTGCGAGAAGGTGGAACC
TGACAAGCCAGCTCGTTTGAAGGTCCCAAAGCTGAAAGCAGAGCCTGCAGTGCATAAGGATGACATAGTTGAGTTGAAGA
GGGACCGAGTCCCAACTTTTAACCAGATGACTGATCCTTACCACCACCCTTTCTGCCTGGACATACATGTCTCCAAGGGG
TCGGTACGTGCTTGCTTCGTTCACCGAGTGACCAGCAGGGTTGTGTCGGTCGCCCACTCCATATCAAAGGACATGAAGTT
TGATCTGGGTTCAAGGAAGGGTATCAAGGCATGTGTGGCGGTTGGGGCATTACTTGCGAAGCGTGCGATAGAGGATGATA
TTCACAATGCAATTTATACACCGAGAAAAGGGGACAAAATTGAAGGAAAGATTGAGGTTGTGTTGCGTGGAATAATTGAG
AATGGAGTCGATGTGAAGGTGAAACTCAAACAAAGGAGGAAGCTAACAAAGGTATGTCATGATTATTTATTATTCTGTTC
CCCTTGTT-TGATGATGCCTTTGAATTTTCTAATATACAATA-----------------TATTTCAATCTTCTCAGCACA
TTACATGTGGAAGTAATTTGAAAATATTTGGTTGATACCAAGCGTGTGAATTTATATAGAGCAGAACTAATCTATGGGTT
CTTG------GGAAACTACATAGAAACATCTCTGTAGTGTATGTTTTATTTTTGCAGTGAAGTTGTATTATTTACGTAGA
CAAGAGTACTTTCTG-AA-ACCTGGTAGTATGGCGATCTTTACATATTTATAGATCTCATGTTGTTATTTTGGCAAGCTG
TTAGAAGCAAAGATACTTTAGTTTTTCTTTCGAATGAACAAGTTCATCATGTTGTTTGCCATTTGAAAATGTTTCAGCGC
AGAGAGGCAAAATCTTCAGGACATTGTGGTATTAAAACCATGCACTCATCTTATCTCATATAGCAGTATATATGCAATAT
TGCAGTGCAGTGCAGTGGGACTCTGGTATTTTCACGAGCCTGTCTGTCTTAGTTAAAAACGTTTAGTTTGAACAATGATG
CCTAA--GCTAAAAACAAATCAATTCCATTCCATCTTTACAGGCTGGATCAATTAGAG-TGAAATCCCATGATGGCACAT
CCACCACTTATAAACGCTACTGTTGTAACAAACAATGCTTGACCTCACTGTTTTGACCTTCACTTGCAGAATGCGCCGGT
GATGCAACAGGGCGGCGAGTCTCGGTGACAGCTCAACGGTTGGCCAGCATATATAACCCCTTGATGGCATGAACCCAATG
CTGCAGGATCCATTTTATGTCATCTTGGAAGACAAACCATGAGATGTAGAACAGCTAAAGGGTATCTGGGCATCCTGTTT
CAGATCTTAGCATTTGTGCCCCCAGGAACTCGCTGCTCTGCCTCGCTGTCTATACTCTGCAGTTTGTGACAAGCCTCCAG
TTCCGTGTGTCTTGTCTTTGGCCTGCTTCATGGCATCAGCAGCATTCGAAATTGGAGTGCACATTACATGGCGCAGTTTG
GTAGATGCCTGCGCTTTGTGGTAGGATTCTACCGGCTTTTCGCCTTG-TAGTGTTGTTCTTTTTACATTCTCGCTTGCTC
AAGTTCAGAGATGTAACTGAGATCCCGGCCTGTACCTGACTTTTTTCTATCTTGGAATGAA---CTCCATTTGCACCAGT
T-CCCGTAGCAAAATTATATTGGGGAGTCTAACACATTATAAGTTTTCTAC-----------------------------
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--------------------------------------------------TTTCT-CCTATGAGTAATCGAATAACTTTC
AATCTTGTACTAGTAGGATCCAAAACGCGATGACATTGTAATCATATATT------------------------------
-----------------------CTGCCATGCTTCTGGTTATGAAGCGAAATGTTTGTGCCGAACTCCTCCTGTGTGTAT
TTTGCAGTCAGTCATCATCACCGGTGGGAGCTGTGATACTGAGAAAACCCACCCAAACCCT----CCCCTAACAAACACC
ACT-CCATGCCGCTCCGCACGCTGCTCCGGCACCTCGCGGCCGGCCAGTTCGCGCGCCTGCAGGCGCTCACCGGCGCGGC
CACGGCGCCGGCCGCGCACCGCGTCCTCCACCTCCTCCTCCGCACCGCGCCGGTCCCTCCCCTCCCCGACCTCGTCTCCC
TCGCGCGC------------------------------------------------------------------------
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-----------------------------------------------TGGTCCCGCTCCCACTTCCGCGCGCCTCTTCCG
CTCCAGCTCCACGCGCTGCTGCTCGCCCGCCTCGCCTCCCACGGCCTCCACCCGCTGCTCCGCTCCGAGCTCCACACCCT
>chr1B_1040
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----------------------------------TGGTCTCAGCCACCTCGCAGCTGTTAGT-GCTCCTTCATATCTTCC
GCTCGCTCTCTATTCTACCATACATAGCCTCGGTCATGCCGTCCTACCACTCTTCTACACAAATTCATCTGCCCCAAACC
TTGCATTGCTCAGATTCCATCCCACTTGGCGTCGGCTTCCAAATTGATATTGTTGACTCCAACCTCTGGCCCGCATCCAT
TGGCTTCTCCTTAGACCCCACGCCGGGTGTTGAGTGTCTTGA---CTTCCAAGAACATGGATAAGAATAAGTGCACGGCT
TGGATGATGAGACAGATGACACGAGGAACCGCAAGAAGCTGTTCTACAAGCTGGACGGAGGGTCCAAGGAGTTTGAGGAA
TATAACTTGCCCTTGCACCGCAGATGGAAGAGAGATAAACCCAATGCCAAGAATCCATCTGATTGC---AAGGTGAAACC
TGACAATGCAGCCCGTTTGAAGGTTCCAAAGCTGAAAGCAAAGCCTGCAGTTCATAAGGATGACATTGTTGAGTTGAAGA
GGGACCGAGTGCCAACCTTTAACCAGATGGTTGATCCTTACCACCACCCTTTCTGCCTAGACATACATGTCCCGAAGGGG
TGGGTGCGTGCTTGCTTCGTTCACCGAATGACCAGCAGGGTTGTGTCCGTGGCTCACTCCATATCAAAGGACATGAAGTT
TGATCTGGGTTCAAGGAAGGGTATTAAGGCATGTGTGGCGGTTGGGACGTTACTTGCGAGGCGTGCGATAGAGGATGATA
TTCACTATGCAATTTATACACCTAGAAAAGGCGACAAAACTGAAGGAAAGATTGAGGTTGTGTTGCATGGAATAATTGAT
AATGGAGTTGATGTGAAGGTGAAACTCAAACAAAGGA---AGCTAACAACGGTATGTCATGATTATTTATTATTGTACTT
TGCTTGTCATGATGATATTTGTAAATTTTCTAATACATGTCTTAATCTTTTTTTAAAGCTATTATAATCTTTTCAGCACA
TAACATGTGGAACTAATTGAAAAATACTTGGTTTATACCATGTGTGCGAATTTAGATAGGGCAGA---------------
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>chr1A_1743
--------------------------------------------------------------------------------
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-----------------AGGGCATCAAGGCATGTGCGGCGGTTGGTGCCTTACTTGTGAAGTGTGCGATAGAGGATGATA
TTTACGATGCAATTTATACACCTAGAAAAAGGGACGAAATTGAAGGAAAAATTGAGGTTGTGTTGCGTGGAATAATTGAG
AATGGAGTCGATGTGAAGGTGAAACTCAAACAAAGGAGGAAGCTAACAAAGGTATGTCATGAT-ATGTACTATTCTA-TT
CGCTTGTT-TGATGATGCCTTTGAAATATCTAAT-----ATA-----------------TATTTTAATCTTCTCAGCACA
TAACATGTGGAAGTAATTTGAAAATACTTGGTTGATACCAAGTGTGTGAATTTATATAGGGCAGAACTAATCTATGTTTC
TCTTTTGGGCGGGAACTACATAGAAACATCTCTGTACAC-ATATTTTATTTTTCAAATGAAGTTGTTTTATTCACGCAGA
CAAGAGTACTTTCTG-AAAACTTGGTACTACAGTGATCTTTACATATTTATAAATCTCA---TGTTATTCTGACAAGCTA
TTAGAAGCAAAGAT--TTTAGTTTCTCTTTAAAATGAA------------------------------------------
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>chr1A_2702
CCAGCA--------------------------------------------------------------------------
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--------------------------------------------------ATATAACCCCTTGATGACATGAACCCAATG
CTGCAGGATCCATTTTATGTCTGCTTGGAAGACAAACCATGAGATGTAGAACAACTAAAGGGTAT--------CCTGTTT
CAGATCTTAGCATTTGTG-CCCCAGGAACTCGCTGCTCTGCCTCGCTGTCTATACTCTGCAGTTTGTGACAAGCCTCCAG
TTCCATGTGTCTTGTCTTTGGCCTGCTTCATGGCATCAGCAACATTCGAAATTGGAGTGCATATGACATGACACAGTTTG
G------CCTGCGCTTTGTGGTAAGATTCTACCGGCTTTTCGCCTTG-TAGTGTTGTTCTTTTTACATTCTCGCTTGCTC
ATGTTCAGAGATGTAATTGAGATCTTGGCCTGTATCTGACTTTTTCCTCTCTTGGAATGAACTTCTCCATTTGCACCAAG
T-CCCCTAGCAAAATTATATTG---AGTCTAACATGTTTTTATGAGTAATTGAATAATTTTTAAACCTCTTATAAGTAAT
GTAAAAAGAACAAGCAGATTTCTAAACCTTTATATTGAAAAATTATATTCAATTACCTTTAGAATGAATTTCTTCATTTG
CATCAAGAGAGAAAGAACATGTAAAATTATATTAACTTTCTTCTCTCTTAGAATGAACTTCTCCATTTGGGATAATTATT
CAACCCCGGCCTTGTTTGGTTGTGTGTGGATCCGAGGGGTCTGTGGGGGATTTAAACTCTTATAAGTCAAACTACGTTCC
AATCCTCTTGAAAGGAGGATTAATCGAACAAGCAATAAAAGATTTATATGTTTTT-TCTATGAGTAATCGAATATTTTTT
TAATCTTATAAA-----ATCCAAATTGAGATGATATTGTAATTATATACTCTCCGTTTCAAATTACTTATCGTGGAGTAA
TTTGGAATGGAGAGAGTACGTTTCTGCCGTGCTTCTGGTTCTGAAACGAAATGTTTGTGCCGAACTCCTCTTGAGTGTAT
TTTCCAGTCAGTCATCATCACCGCTGGGAGCTGTGATACTGAGAAAACCCACCCAAACCCT----CCCCTAACAAACACC
CCCACCATGCCGCTCCGCACGCTGCTCCGGCACCTCTCGGCCGGCCAGTTCGCGCGCCTGCAGGCACTCACGGGCGCGGC
CACGGCGCCGGCCGCGCACCGCGTCCTCCACCTCCTCCTCCGCACCGCGCCGGCCCCTCCCCTCCCCCACCTCGTCTCCC
TCGCGCGCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTCCCGCTCCCACTTCCGCGCGCCTCTCCCG
CTCCGGTTCCACGCGCTGCTGCTGGCCCGCCTCGCCTCCCACGGCCTCCACCCGCTGCTCCGCTCCGAGCTCCACGCCCT
>SNPs
SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
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SSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------SSS---SS--S-----SSSSSSSSSS-------S--
--------------------------------------------------------------------------------
---------------------S--------S-----------------S-------------------------------
--------------------------------------------------------------S-----------------
------------S----------------S-----S------------SS------------------------------
--------------------------------------------------------------------------------
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---S----------------------------------------------------------------------------
------------------------------------------------------------------S------S------
----------------------------------------------------------------------------S---
--------------------------------------------------------S-----------------------
--------------------------------------------------------------------------------
----------------------------------------S--------------------------------------S
---------------------------------------------------S----------------------------
---S----------------------------------------------------------------------S-----
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------S-----------------------------------------------
---------------------------------------S----------------------------------------
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----------------------------------------------------------------S---------------
--------S----------------------------------------S---SS-------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
---------------------------------------------------------------------S----------
-------------------------S-S----------------------------------------------------
---------------S----------------------------------------------------------------
------S--S--------------------------------------------------------------S-------
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-------------------------------------------------S------------------------------
-S---------------S---------------------S-S--------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------S---SS-----------------S------
------------------------------------S--------------S----------------------------
----------------------S---------------------------------------------------S-----
-----------------------------S------------------------S--S--SSSSS---------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
>forward_62
------------------------------------------GCGTCTATGGCGACTTCGTA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_1680
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------G
TATAACTTGCCCTTGCGCC-------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_468
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------GGAAACGTCTCCTCCCACTG------------
--------------------------------------------------------------------------------
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>reverse_1764
--------------------------------------------------------------------------------
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---GAAGCCAGCTCGTTTGAAGG---------------------------------------------------------
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>forward_567
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------ACCACTGCCACCT
AACCATC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_1941
--------------------------------------------------------------------------------
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--------------------CCACCGAGTGACCAGCAG------------------------------------------
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>forward_568
--------------------------------------------------------------------------------
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--------------------------------------------------------------------CCACTGCCACCT
AACCATCT------------------------------------------------------------------------
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>reverse_2826
--------------------------------------------------------------------------------
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-------------------------TCGTTCCATCTTTACAGGCTGG---------------------------------
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>forward_1680
--------------------------------------------------------------------------------
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-----------------------------------------------------------GGGTCCAAGGAGTTTGAGGAG
--------------------------------------------------------------------------------
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>reverse_3943
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CCTGCCATGCTTCTGGTTCT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
