Multiple sequence alignment - TraesCS1D01G154700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G154700 chr1D 100.000 5115 0 0 1 5115 216130332 216135446 0.000000e+00 9446
1 TraesCS1D01G154700 chr1D 98.928 1026 11 0 650 1675 216125202 216126227 0.000000e+00 1834
2 TraesCS1D01G154700 chr1D 99.842 632 1 0 1673 2304 216130352 216130983 0.000000e+00 1162
3 TraesCS1D01G154700 chr1D 99.842 632 1 0 21 652 216132004 216132635 0.000000e+00 1162
4 TraesCS1D01G154700 chr1D 99.494 395 0 2 4723 5115 213574658 213574264 0.000000e+00 717
5 TraesCS1D01G154700 chr1B 90.306 2352 69 47 650 2916 309165620 309167897 0.000000e+00 2933
6 TraesCS1D01G154700 chr1B 92.312 1704 79 18 3000 4693 309167914 309169575 0.000000e+00 2374
7 TraesCS1D01G154700 chr1B 90.432 648 24 14 21 652 309166668 309167293 0.000000e+00 819
8 TraesCS1D01G154700 chr1B 93.878 98 6 0 2916 3013 631858591 631858494 1.150000e-31 148
9 TraesCS1D01G154700 chr1A 86.245 2370 97 85 650 2900 276802156 276804415 0.000000e+00 2359
10 TraesCS1D01G154700 chr1A 91.827 1615 66 25 3128 4690 276804510 276806110 0.000000e+00 2191
11 TraesCS1D01G154700 chr1A 89.147 645 22 18 28 652 276803162 276803778 0.000000e+00 760
12 TraesCS1D01G154700 chr6D 98.496 399 2 3 4720 5115 16748113 16748510 0.000000e+00 701
13 TraesCS1D01G154700 chr6D 97.236 398 6 4 4718 5110 5879525 5879128 0.000000e+00 669
14 TraesCS1D01G154700 chr6D 94.898 98 4 1 2916 3013 462032737 462032641 8.870000e-33 152
15 TraesCS1D01G154700 chr5D 98.254 401 6 1 4716 5115 355793908 355793508 0.000000e+00 701
16 TraesCS1D01G154700 chr5D 97.030 404 6 4 4717 5115 320366672 320367074 0.000000e+00 675
17 TraesCS1D01G154700 chr7D 98.485 396 3 1 4723 5115 111109190 111109585 0.000000e+00 695
18 TraesCS1D01G154700 chr7D 98.232 396 3 3 4723 5115 388631851 388631457 0.000000e+00 689
19 TraesCS1D01G154700 chr7D 96.517 402 11 2 4717 5115 609708699 609708298 0.000000e+00 662
20 TraesCS1D01G154700 chr2D 97.494 399 6 2 4719 5115 163346511 163346907 0.000000e+00 678
21 TraesCS1D01G154700 chr5B 94.845 97 4 1 2916 3012 511839699 511839794 3.190000e-32 150
22 TraesCS1D01G154700 chr5B 91.429 105 5 3 2916 3019 228061859 228061960 1.920000e-29 141
23 TraesCS1D01G154700 chr5B 90.654 107 8 2 2916 3022 278886968 278886864 1.920000e-29 141
24 TraesCS1D01G154700 chr4B 94.792 96 5 0 2916 3011 565865943 565865848 3.190000e-32 150
25 TraesCS1D01G154700 chr7B 93.000 100 7 0 2916 3015 495311828 495311927 4.130000e-31 147
26 TraesCS1D01G154700 chr7A 91.509 106 6 3 2902 3004 439804325 439804430 5.340000e-30 143
27 TraesCS1D01G154700 chr6A 92.157 102 6 2 2916 3017 394506125 394506224 5.340000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G154700 chr1D 216130332 216135446 5114 False 9446 9446 100.000000 1 5115 1 chr1D.!!$F2 5114
1 TraesCS1D01G154700 chr1D 216125202 216126227 1025 False 1834 1834 98.928000 650 1675 1 chr1D.!!$F1 1025
2 TraesCS1D01G154700 chr1D 216130352 216132635 2283 False 1162 1162 99.842000 21 2304 2 chr1D.!!$F3 2283
3 TraesCS1D01G154700 chr1B 309165620 309169575 3955 False 2042 2933 91.016667 21 4693 3 chr1B.!!$F1 4672
4 TraesCS1D01G154700 chr1A 276802156 276806110 3954 False 1770 2359 89.073000 28 4690 3 chr1A.!!$F1 4662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2313 2416 2.162906 AGGGGACATGGCACTTGGT 61.163 57.895 0.0 0.0 0.0 3.67 F
2643 2799 0.322187 AGGGTTGCCGTATTGTGGTC 60.322 55.000 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3402 3604 0.309612 AAAACGCCAAGTTACAGCCG 59.690 50.0 0.0 0.0 43.37 5.52 R
4408 4676 0.107993 TGACTGATACCAGCAGCAGC 60.108 55.0 0.0 0.0 44.16 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2313 2416 2.162906 AGGGGACATGGCACTTGGT 61.163 57.895 0.00 0.00 0.00 3.67
2347 2453 9.994017 AAGAAAAGAATACCCTCTACTACTACT 57.006 33.333 0.00 0.00 0.00 2.57
2379 2485 2.354259 GAGGAGCAGTTGTGATCAAGG 58.646 52.381 0.00 0.00 41.16 3.61
2381 2487 0.807496 GAGCAGTTGTGATCAAGGGC 59.193 55.000 0.00 0.00 39.05 5.19
2434 2549 4.608951 GGCGTGAGGATAAACTACTACTG 58.391 47.826 0.00 0.00 0.00 2.74
2448 2563 1.956477 ACTACTGGCAGTGCAAAAAGG 59.044 47.619 29.65 11.12 0.00 3.11
2643 2799 0.322187 AGGGTTGCCGTATTGTGGTC 60.322 55.000 0.00 0.00 0.00 4.02
2650 2806 2.102420 TGCCGTATTGTGGTCTATCCTG 59.898 50.000 0.00 0.00 37.07 3.86
2678 2834 6.452494 ACTACTATGTCACATCACTGGTAC 57.548 41.667 0.00 0.00 0.00 3.34
2695 2851 5.909621 TGGTACAGTAGATGGTTACTCAC 57.090 43.478 0.00 0.00 31.64 3.51
2838 3011 9.232473 AGGTAAAAGGAGAGTTGATATTTGAAC 57.768 33.333 0.00 0.00 0.00 3.18
2839 3012 8.459635 GGTAAAAGGAGAGTTGATATTTGAACC 58.540 37.037 0.00 0.00 0.00 3.62
2840 3013 9.010029 GTAAAAGGAGAGTTGATATTTGAACCA 57.990 33.333 0.00 0.00 0.00 3.67
2841 3014 8.655935 AAAAGGAGAGTTGATATTTGAACCAT 57.344 30.769 0.00 0.00 0.00 3.55
2911 3085 9.078990 CATCTTGGGAATGTGATACTAGTAGTA 57.921 37.037 12.38 12.38 34.82 1.82
2912 3086 8.693120 TCTTGGGAATGTGATACTAGTAGTAG 57.307 38.462 15.08 2.87 33.66 2.57
2915 3089 8.834004 TGGGAATGTGATACTAGTAGTAGTTT 57.166 34.615 15.34 7.91 40.23 2.66
2928 3102 8.436200 ACTAGTAGTAGTTTTACTTGTCGTACG 58.564 37.037 9.53 9.53 40.55 3.67
2929 3103 7.190920 AGTAGTAGTTTTACTTGTCGTACGT 57.809 36.000 16.05 0.00 40.55 3.57
2932 3106 8.989767 GTAGTAGTTTTACTTGTCGTACGTATG 58.010 37.037 16.05 8.56 40.55 2.39
2933 3107 7.023575 AGTAGTTTTACTTGTCGTACGTATGG 58.976 38.462 16.05 7.26 36.75 2.74
2934 3108 6.012658 AGTTTTACTTGTCGTACGTATGGA 57.987 37.500 16.05 5.16 0.00 3.41
2935 3109 6.624423 AGTTTTACTTGTCGTACGTATGGAT 58.376 36.000 16.05 0.78 0.00 3.41
2936 3110 6.529125 AGTTTTACTTGTCGTACGTATGGATG 59.471 38.462 16.05 6.93 0.00 3.51
2937 3111 5.565592 TTACTTGTCGTACGTATGGATGT 57.434 39.130 16.05 11.53 0.00 3.06
2938 3112 6.676237 TTACTTGTCGTACGTATGGATGTA 57.324 37.500 16.05 10.72 0.00 2.29
2939 3113 5.762825 ACTTGTCGTACGTATGGATGTAT 57.237 39.130 16.05 0.00 29.78 2.29
2940 3114 5.755813 ACTTGTCGTACGTATGGATGTATC 58.244 41.667 16.05 0.00 29.78 2.24
2979 3153 9.632807 AGTTCTAGATATATTCATTTCAGCGAC 57.367 33.333 0.00 0.00 0.00 5.19
2980 3154 8.579600 GTTCTAGATATATTCATTTCAGCGACG 58.420 37.037 0.00 0.00 0.00 5.12
2981 3155 8.040716 TCTAGATATATTCATTTCAGCGACGA 57.959 34.615 0.00 0.00 0.00 4.20
2982 3156 8.178313 TCTAGATATATTCATTTCAGCGACGAG 58.822 37.037 0.00 0.00 0.00 4.18
2983 3157 6.682746 AGATATATTCATTTCAGCGACGAGT 58.317 36.000 0.00 0.00 0.00 4.18
2984 3158 7.817641 AGATATATTCATTTCAGCGACGAGTA 58.182 34.615 0.00 0.00 0.00 2.59
2985 3159 8.297426 AGATATATTCATTTCAGCGACGAGTAA 58.703 33.333 0.00 0.00 0.00 2.24
2986 3160 8.988064 ATATATTCATTTCAGCGACGAGTAAT 57.012 30.769 0.00 0.00 0.00 1.89
2987 3161 7.715265 ATATTCATTTCAGCGACGAGTAATT 57.285 32.000 0.00 0.00 0.00 1.40
2988 3162 5.856126 TTCATTTCAGCGACGAGTAATTT 57.144 34.783 0.00 0.00 0.00 1.82
2989 3163 5.203358 TCATTTCAGCGACGAGTAATTTG 57.797 39.130 0.00 0.00 0.00 2.32
2990 3164 4.092821 TCATTTCAGCGACGAGTAATTTGG 59.907 41.667 0.00 0.00 0.00 3.28
2991 3165 3.306917 TTCAGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
2994 3168 1.990563 AGCGACGAGTAATTTGGAACG 59.009 47.619 0.00 0.00 0.00 3.95
2998 3172 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2999 3173 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3000 3174 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
3008 3182 1.271871 TGGAACGGAGGGAGTACGTAA 60.272 52.381 0.00 0.00 40.31 3.18
3011 3185 3.823304 GGAACGGAGGGAGTACGTAATAT 59.177 47.826 0.00 0.00 40.31 1.28
3018 3192 6.091441 CGGAGGGAGTACGTAATATAGTGTAC 59.909 46.154 0.00 4.11 37.93 2.90
3020 3194 8.314751 GGAGGGAGTACGTAATATAGTGTACTA 58.685 40.741 0.00 0.00 45.43 1.82
3344 3546 4.892433 CTGGATCAGGATCAGGTGAATAC 58.108 47.826 11.12 0.00 39.54 1.89
3402 3604 4.466726 AGGTTACAGTCAAGTGGTAGATCC 59.533 45.833 0.00 0.00 0.00 3.36
3416 3618 0.107654 AGATCCGGCTGTAACTTGGC 60.108 55.000 0.00 0.00 0.00 4.52
3435 3639 4.323417 TGGCGTTTTTCACATGTCTATCT 58.677 39.130 0.00 0.00 0.00 1.98
3438 3642 6.092122 TGGCGTTTTTCACATGTCTATCTAAG 59.908 38.462 0.00 0.00 0.00 2.18
3551 3799 3.953775 CACCCCCACCGAGTTGCT 61.954 66.667 0.00 0.00 0.00 3.91
3552 3800 3.953775 ACCCCCACCGAGTTGCTG 61.954 66.667 0.00 0.00 0.00 4.41
3553 3801 3.636231 CCCCCACCGAGTTGCTGA 61.636 66.667 0.00 0.00 0.00 4.26
3554 3802 2.046892 CCCCACCGAGTTGCTGAG 60.047 66.667 0.00 0.00 0.00 3.35
3555 3803 2.583441 CCCCACCGAGTTGCTGAGA 61.583 63.158 0.00 0.00 0.00 3.27
3556 3804 1.079543 CCCACCGAGTTGCTGAGAG 60.080 63.158 0.00 0.00 0.00 3.20
3557 3805 1.739562 CCACCGAGTTGCTGAGAGC 60.740 63.158 0.00 0.00 42.82 4.09
3558 3806 1.291588 CACCGAGTTGCTGAGAGCT 59.708 57.895 0.00 0.00 42.97 4.09
3559 3807 1.013005 CACCGAGTTGCTGAGAGCTG 61.013 60.000 0.00 0.00 42.97 4.24
3560 3808 2.099431 CCGAGTTGCTGAGAGCTGC 61.099 63.158 0.00 0.00 42.97 5.25
3561 3809 1.079956 CGAGTTGCTGAGAGCTGCT 60.080 57.895 0.00 0.00 42.97 4.24
3562 3810 1.077645 CGAGTTGCTGAGAGCTGCTC 61.078 60.000 21.72 21.72 42.97 4.26
3569 3817 3.163655 GAGAGCTGCTCGTGTTGC 58.836 61.111 22.77 6.91 35.36 4.17
3620 3868 6.286758 ACCAGTAGCAGATTATTCATGTGAG 58.713 40.000 0.00 0.00 0.00 3.51
3648 3896 3.327757 TCAATGCAGGAGGATATGGTACC 59.672 47.826 4.43 4.43 0.00 3.34
3728 3976 1.531602 GGGCTGCCACTGTCCTTTT 60.532 57.895 22.05 0.00 0.00 2.27
3733 3981 2.301346 CTGCCACTGTCCTTTTTGTCT 58.699 47.619 0.00 0.00 0.00 3.41
3744 3992 6.238648 TGTCCTTTTTGTCTATCCTTCCTTC 58.761 40.000 0.00 0.00 0.00 3.46
3747 3995 6.272324 TCCTTTTTGTCTATCCTTCCTTCAGA 59.728 38.462 0.00 0.00 0.00 3.27
3777 4027 3.064134 TGAAAAATGTCTGAACGAACGCA 59.936 39.130 0.00 0.00 0.00 5.24
3781 4031 0.234625 TGTCTGAACGAACGCAATGC 59.765 50.000 0.00 0.00 0.00 3.56
3995 4252 0.230260 TGAACTCGCGCGTGTAAAAC 59.770 50.000 33.97 24.20 0.00 2.43
4009 4266 4.065088 GTGTAAAACTCTGCATCTGACCA 58.935 43.478 0.00 0.00 0.00 4.02
4199 4461 8.042515 TGTGTTTAACTCTGATGATGATGATGA 58.957 33.333 0.00 0.00 0.00 2.92
4200 4462 9.053840 GTGTTTAACTCTGATGATGATGATGAT 57.946 33.333 0.00 0.00 0.00 2.45
4201 4463 9.052759 TGTTTAACTCTGATGATGATGATGATG 57.947 33.333 0.00 0.00 0.00 3.07
4214 4476 3.003394 TGATGATGCGGATTTGGAGTT 57.997 42.857 0.00 0.00 0.00 3.01
4217 4479 3.003394 TGATGCGGATTTGGAGTTCAT 57.997 42.857 0.00 0.00 0.00 2.57
4261 4523 6.140108 CGTTGTTTGATTGTTGTTGTAGTAGC 59.860 38.462 0.00 0.00 0.00 3.58
4262 4524 6.685527 TGTTTGATTGTTGTTGTAGTAGCA 57.314 33.333 0.00 0.00 0.00 3.49
4263 4525 7.089770 TGTTTGATTGTTGTTGTAGTAGCAA 57.910 32.000 0.00 0.00 0.00 3.91
4264 4526 6.970043 TGTTTGATTGTTGTTGTAGTAGCAAC 59.030 34.615 2.38 2.38 46.82 4.17
4375 4637 2.530701 AGGTCCCTATTAGAGCATCGG 58.469 52.381 0.00 0.00 42.67 4.18
4387 4655 1.953138 GCATCGGCGTCCATCTCTG 60.953 63.158 6.85 0.00 0.00 3.35
4408 4676 6.806751 TCTGCCTGCTTAATTAGTACTACTG 58.193 40.000 0.91 0.00 0.00 2.74
4505 4776 1.742831 GTGTGCACAACTTTGGTCAGA 59.257 47.619 23.59 0.00 0.00 3.27
4524 4795 3.519579 AGACAGACTGAGCATTGAATCG 58.480 45.455 10.08 0.00 0.00 3.34
4534 4805 1.667724 GCATTGAATCGAGAGGTGTGG 59.332 52.381 0.00 0.00 0.00 4.17
4548 4819 3.813724 GAGGTGTGGGTGTTTCTCTAAAC 59.186 47.826 0.00 0.00 44.40 2.01
4571 4842 3.556423 CCATTACCCCTACGCTATGGTTC 60.556 52.174 0.00 0.00 32.27 3.62
4611 4882 6.702329 TGTTTGTATTTGGTTTTCACTTGGT 58.298 32.000 0.00 0.00 0.00 3.67
4682 4953 1.959985 TGTTTCCATTGCATGTCGGTT 59.040 42.857 0.00 0.00 0.00 4.44
4684 4955 3.570125 TGTTTCCATTGCATGTCGGTTTA 59.430 39.130 0.00 0.00 0.00 2.01
4693 4964 9.108284 CCATTGCATGTCGGTTTATGATATATA 57.892 33.333 0.00 0.00 0.00 0.86
4752 5023 3.878667 GGGATTCCCCGGCCTCTG 61.879 72.222 11.02 0.00 44.02 3.35
4753 5024 4.570874 GGATTCCCCGGCCTCTGC 62.571 72.222 0.00 0.00 0.00 4.26
4754 5025 3.797353 GATTCCCCGGCCTCTGCA 61.797 66.667 0.00 0.00 40.13 4.41
4755 5026 3.099170 ATTCCCCGGCCTCTGCAT 61.099 61.111 0.00 0.00 40.13 3.96
4756 5027 3.125376 ATTCCCCGGCCTCTGCATC 62.125 63.158 0.00 0.00 40.13 3.91
4758 5029 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
4759 5030 4.559063 CCCGGCCTCTGCATCAGG 62.559 72.222 0.00 7.38 40.13 3.86
4760 5031 3.790437 CCGGCCTCTGCATCAGGT 61.790 66.667 12.36 0.00 40.13 4.00
4761 5032 2.513204 CGGCCTCTGCATCAGGTG 60.513 66.667 12.36 3.60 40.13 4.00
4762 5033 2.124403 GGCCTCTGCATCAGGTGG 60.124 66.667 12.36 1.24 40.13 4.61
4763 5034 2.673200 GGCCTCTGCATCAGGTGGA 61.673 63.158 12.36 0.00 40.13 4.02
4764 5035 1.530771 GCCTCTGCATCAGGTGGAT 59.469 57.895 12.36 0.00 37.47 3.41
4772 5043 1.516161 CATCAGGTGGATGCATACGG 58.484 55.000 4.01 0.00 46.35 4.02
4773 5044 0.250467 ATCAGGTGGATGCATACGGC 60.250 55.000 4.01 0.00 45.13 5.68
4774 5045 1.893808 CAGGTGGATGCATACGGCC 60.894 63.158 12.93 12.93 43.89 6.13
4775 5046 2.191908 GGTGGATGCATACGGCCA 59.808 61.111 15.22 8.81 43.89 5.36
4776 5047 3.420943 GTGGATGCATACGGCCAC 58.579 61.111 16.85 16.85 43.34 5.01
4777 5048 1.153168 GTGGATGCATACGGCCACT 60.153 57.895 22.03 0.00 45.58 4.00
4778 5049 0.748005 GTGGATGCATACGGCCACTT 60.748 55.000 22.03 0.00 45.58 3.16
4779 5050 0.833949 TGGATGCATACGGCCACTTA 59.166 50.000 4.01 0.00 43.89 2.24
4780 5051 1.202639 TGGATGCATACGGCCACTTAG 60.203 52.381 4.01 0.00 43.89 2.18
4781 5052 1.070134 GGATGCATACGGCCACTTAGA 59.930 52.381 2.24 0.00 43.89 2.10
4782 5053 2.289694 GGATGCATACGGCCACTTAGAT 60.290 50.000 2.24 0.00 43.89 1.98
4783 5054 3.056107 GGATGCATACGGCCACTTAGATA 60.056 47.826 2.24 0.00 43.89 1.98
4784 5055 4.562757 GGATGCATACGGCCACTTAGATAA 60.563 45.833 2.24 0.00 43.89 1.75
4785 5056 4.409718 TGCATACGGCCACTTAGATAAA 57.590 40.909 2.24 0.00 43.89 1.40
4786 5057 4.968259 TGCATACGGCCACTTAGATAAAT 58.032 39.130 2.24 0.00 43.89 1.40
4787 5058 6.104146 TGCATACGGCCACTTAGATAAATA 57.896 37.500 2.24 0.00 43.89 1.40
4788 5059 6.526526 TGCATACGGCCACTTAGATAAATAA 58.473 36.000 2.24 0.00 43.89 1.40
4789 5060 6.993308 TGCATACGGCCACTTAGATAAATAAA 59.007 34.615 2.24 0.00 43.89 1.40
4790 5061 7.499563 TGCATACGGCCACTTAGATAAATAAAA 59.500 33.333 2.24 0.00 43.89 1.52
4791 5062 8.512138 GCATACGGCCACTTAGATAAATAAAAT 58.488 33.333 2.24 0.00 36.11 1.82
4794 5065 8.617290 ACGGCCACTTAGATAAATAAAATAGG 57.383 34.615 2.24 0.00 0.00 2.57
4795 5066 8.215736 ACGGCCACTTAGATAAATAAAATAGGT 58.784 33.333 2.24 0.00 0.00 3.08
4796 5067 9.063615 CGGCCACTTAGATAAATAAAATAGGTT 57.936 33.333 2.24 0.00 0.00 3.50
4812 5083 8.574196 AAAATAGGTTCAACAATGTCGAAAAG 57.426 30.769 0.00 0.00 0.00 2.27
4813 5084 6.877611 ATAGGTTCAACAATGTCGAAAAGT 57.122 33.333 0.00 0.00 0.00 2.66
4814 5085 5.169836 AGGTTCAACAATGTCGAAAAGTC 57.830 39.130 0.00 0.00 0.00 3.01
4830 5101 6.630931 CGAAAAGTCGTAAAAGAAACTACGT 58.369 36.000 0.00 0.00 42.53 3.57
4831 5102 6.778179 CGAAAAGTCGTAAAAGAAACTACGTC 59.222 38.462 0.00 0.00 42.53 4.34
4832 5103 5.796279 AAGTCGTAAAAGAAACTACGTCG 57.204 39.130 0.00 0.00 41.26 5.12
4833 5104 5.095691 AGTCGTAAAAGAAACTACGTCGA 57.904 39.130 0.00 0.00 41.26 4.20
4834 5105 5.142962 AGTCGTAAAAGAAACTACGTCGAG 58.857 41.667 0.00 0.00 41.26 4.04
4835 5106 3.908382 TCGTAAAAGAAACTACGTCGAGC 59.092 43.478 0.00 0.00 41.26 5.03
4836 5107 3.910767 CGTAAAAGAAACTACGTCGAGCT 59.089 43.478 0.00 0.00 36.89 4.09
4837 5108 4.028867 CGTAAAAGAAACTACGTCGAGCTC 59.971 45.833 2.73 2.73 36.89 4.09
4838 5109 3.637998 AAAGAAACTACGTCGAGCTCA 57.362 42.857 15.40 0.00 0.00 4.26
4839 5110 2.615489 AGAAACTACGTCGAGCTCAC 57.385 50.000 15.40 10.09 0.00 3.51
4840 5111 1.878088 AGAAACTACGTCGAGCTCACA 59.122 47.619 15.40 0.00 0.00 3.58
4841 5112 2.292569 AGAAACTACGTCGAGCTCACAA 59.707 45.455 15.40 0.00 0.00 3.33
4842 5113 2.787601 AACTACGTCGAGCTCACAAA 57.212 45.000 15.40 1.75 0.00 2.83
4843 5114 2.333389 ACTACGTCGAGCTCACAAAG 57.667 50.000 15.40 12.24 0.00 2.77
4844 5115 1.878088 ACTACGTCGAGCTCACAAAGA 59.122 47.619 15.40 0.00 0.00 2.52
4845 5116 2.243407 CTACGTCGAGCTCACAAAGAC 58.757 52.381 15.40 11.24 0.00 3.01
4846 5117 0.318784 ACGTCGAGCTCACAAAGACC 60.319 55.000 15.40 0.00 0.00 3.85
4847 5118 0.039074 CGTCGAGCTCACAAAGACCT 60.039 55.000 15.40 0.00 0.00 3.85
4848 5119 1.704070 GTCGAGCTCACAAAGACCTC 58.296 55.000 15.40 0.00 0.00 3.85
4849 5120 2.730626 CGAGCTCACAAAGACCTCG 58.269 57.895 15.40 0.00 43.61 4.63
4850 5121 0.039074 CGAGCTCACAAAGACCTCGT 60.039 55.000 15.40 0.00 43.93 4.18
4851 5122 1.704070 GAGCTCACAAAGACCTCGTC 58.296 55.000 9.40 0.00 0.00 4.20
4852 5123 1.000163 GAGCTCACAAAGACCTCGTCA 60.000 52.381 9.40 0.00 34.60 4.35
4853 5124 1.140816 GCTCACAAAGACCTCGTCAC 58.859 55.000 0.00 0.00 34.60 3.67
4854 5125 1.538204 GCTCACAAAGACCTCGTCACA 60.538 52.381 0.00 0.00 34.60 3.58
4855 5126 2.821546 CTCACAAAGACCTCGTCACAA 58.178 47.619 0.00 0.00 34.60 3.33
4856 5127 3.194861 CTCACAAAGACCTCGTCACAAA 58.805 45.455 0.00 0.00 34.60 2.83
4857 5128 3.601435 TCACAAAGACCTCGTCACAAAA 58.399 40.909 0.00 0.00 34.60 2.44
4858 5129 4.004314 TCACAAAGACCTCGTCACAAAAA 58.996 39.130 0.00 0.00 34.60 1.94
4879 5150 2.629002 GCCATATAGCCACAACCGG 58.371 57.895 0.00 0.00 0.00 5.28
4887 5158 4.641645 CCACAACCGGCTGGCAGA 62.642 66.667 20.86 0.00 39.70 4.26
4888 5159 2.594303 CACAACCGGCTGGCAGAA 60.594 61.111 20.86 0.00 39.70 3.02
4889 5160 2.192861 CACAACCGGCTGGCAGAAA 61.193 57.895 20.86 0.00 39.70 2.52
4890 5161 1.454847 ACAACCGGCTGGCAGAAAA 60.455 52.632 20.86 0.00 39.70 2.29
4891 5162 1.040339 ACAACCGGCTGGCAGAAAAA 61.040 50.000 20.86 0.00 39.70 1.94
4892 5163 0.318120 CAACCGGCTGGCAGAAAAAT 59.682 50.000 20.86 0.00 39.70 1.82
4893 5164 1.543802 CAACCGGCTGGCAGAAAAATA 59.456 47.619 20.86 0.00 39.70 1.40
4894 5165 1.463674 ACCGGCTGGCAGAAAAATAG 58.536 50.000 20.86 1.14 39.70 1.73
4895 5166 0.740737 CCGGCTGGCAGAAAAATAGG 59.259 55.000 20.86 5.84 0.00 2.57
4896 5167 1.463674 CGGCTGGCAGAAAAATAGGT 58.536 50.000 20.86 0.00 0.00 3.08
4897 5168 2.639065 CGGCTGGCAGAAAAATAGGTA 58.361 47.619 20.86 0.00 0.00 3.08
4898 5169 3.214328 CGGCTGGCAGAAAAATAGGTAT 58.786 45.455 20.86 0.00 0.00 2.73
4899 5170 3.003689 CGGCTGGCAGAAAAATAGGTATG 59.996 47.826 20.86 0.00 0.00 2.39
4900 5171 3.319122 GGCTGGCAGAAAAATAGGTATGG 59.681 47.826 20.86 0.00 0.00 2.74
4901 5172 4.207165 GCTGGCAGAAAAATAGGTATGGA 58.793 43.478 20.86 0.00 0.00 3.41
4902 5173 4.644685 GCTGGCAGAAAAATAGGTATGGAA 59.355 41.667 20.86 0.00 0.00 3.53
4903 5174 5.127031 GCTGGCAGAAAAATAGGTATGGAAA 59.873 40.000 20.86 0.00 0.00 3.13
4904 5175 6.524101 TGGCAGAAAAATAGGTATGGAAAC 57.476 37.500 0.00 0.00 0.00 2.78
4905 5176 6.252995 TGGCAGAAAAATAGGTATGGAAACT 58.747 36.000 0.00 0.00 0.00 2.66
4906 5177 7.406916 TGGCAGAAAAATAGGTATGGAAACTA 58.593 34.615 0.00 0.00 0.00 2.24
4907 5178 7.891183 TGGCAGAAAAATAGGTATGGAAACTAA 59.109 33.333 0.00 0.00 0.00 2.24
4908 5179 8.914011 GGCAGAAAAATAGGTATGGAAACTAAT 58.086 33.333 0.00 0.00 0.00 1.73
4912 5183 9.529325 GAAAAATAGGTATGGAAACTAATTGCC 57.471 33.333 0.00 0.00 0.00 4.52
4913 5184 8.838649 AAAATAGGTATGGAAACTAATTGCCT 57.161 30.769 0.00 0.00 0.00 4.75
4914 5185 9.930158 AAAATAGGTATGGAAACTAATTGCCTA 57.070 29.630 0.00 0.00 0.00 3.93
4916 5187 9.740710 AATAGGTATGGAAACTAATTGCCTATC 57.259 33.333 0.00 0.00 36.22 2.08
4917 5188 6.543735 AGGTATGGAAACTAATTGCCTATCC 58.456 40.000 0.00 0.00 0.00 2.59
4918 5189 6.332901 AGGTATGGAAACTAATTGCCTATCCT 59.667 38.462 0.00 0.00 0.00 3.24
4919 5190 7.516209 AGGTATGGAAACTAATTGCCTATCCTA 59.484 37.037 0.00 0.00 0.00 2.94
4920 5191 8.329502 GGTATGGAAACTAATTGCCTATCCTAT 58.670 37.037 0.00 0.00 0.00 2.57
4921 5192 9.740710 GTATGGAAACTAATTGCCTATCCTATT 57.259 33.333 0.00 0.00 0.00 1.73
4923 5194 9.740710 ATGGAAACTAATTGCCTATCCTATTAC 57.259 33.333 0.00 0.00 0.00 1.89
4924 5195 8.719596 TGGAAACTAATTGCCTATCCTATTACA 58.280 33.333 0.00 0.00 0.00 2.41
4925 5196 9.740710 GGAAACTAATTGCCTATCCTATTACAT 57.259 33.333 0.00 0.00 0.00 2.29
4928 5199 9.726438 AACTAATTGCCTATCCTATTACATGAC 57.274 33.333 0.00 0.00 0.00 3.06
4929 5200 8.322091 ACTAATTGCCTATCCTATTACATGACC 58.678 37.037 0.00 0.00 0.00 4.02
4930 5201 4.801330 TGCCTATCCTATTACATGACCG 57.199 45.455 0.00 0.00 0.00 4.79
4931 5202 3.056107 TGCCTATCCTATTACATGACCGC 60.056 47.826 0.00 0.00 0.00 5.68
4932 5203 3.679083 GCCTATCCTATTACATGACCGCC 60.679 52.174 0.00 0.00 0.00 6.13
4933 5204 3.513912 CCTATCCTATTACATGACCGCCA 59.486 47.826 0.00 0.00 0.00 5.69
4934 5205 4.162320 CCTATCCTATTACATGACCGCCAT 59.838 45.833 0.00 0.00 35.44 4.40
4935 5206 3.678056 TCCTATTACATGACCGCCATC 57.322 47.619 0.00 0.00 31.94 3.51
4936 5207 2.301870 TCCTATTACATGACCGCCATCC 59.698 50.000 0.00 0.00 31.94 3.51
4937 5208 2.038426 CCTATTACATGACCGCCATCCA 59.962 50.000 0.00 0.00 31.94 3.41
4938 5209 2.727123 ATTACATGACCGCCATCCAA 57.273 45.000 0.00 0.00 31.94 3.53
4939 5210 2.498644 TTACATGACCGCCATCCAAA 57.501 45.000 0.00 0.00 31.94 3.28
4940 5211 1.745232 TACATGACCGCCATCCAAAC 58.255 50.000 0.00 0.00 31.94 2.93
4941 5212 0.965363 ACATGACCGCCATCCAAACC 60.965 55.000 0.00 0.00 31.94 3.27
4942 5213 1.748879 ATGACCGCCATCCAAACCG 60.749 57.895 0.00 0.00 0.00 4.44
4943 5214 3.131478 GACCGCCATCCAAACCGG 61.131 66.667 0.00 0.00 45.80 5.28
4945 5216 2.675075 CCGCCATCCAAACCGGTT 60.675 61.111 15.86 15.86 36.18 4.44
4946 5217 2.566010 CGCCATCCAAACCGGTTG 59.434 61.111 23.08 14.70 36.94 3.77
4947 5218 1.969064 CGCCATCCAAACCGGTTGA 60.969 57.895 23.08 15.50 39.87 3.18
4948 5219 1.519751 CGCCATCCAAACCGGTTGAA 61.520 55.000 23.08 9.90 39.87 2.69
4949 5220 0.894835 GCCATCCAAACCGGTTGAAT 59.105 50.000 23.08 11.91 39.87 2.57
4950 5221 2.096248 GCCATCCAAACCGGTTGAATA 58.904 47.619 23.08 7.51 39.87 1.75
4951 5222 2.693074 GCCATCCAAACCGGTTGAATAT 59.307 45.455 23.08 9.64 39.87 1.28
4952 5223 3.886505 GCCATCCAAACCGGTTGAATATA 59.113 43.478 23.08 4.03 39.87 0.86
4953 5224 4.522789 GCCATCCAAACCGGTTGAATATAT 59.477 41.667 23.08 6.33 39.87 0.86
4954 5225 5.335661 GCCATCCAAACCGGTTGAATATATC 60.336 44.000 23.08 3.59 39.87 1.63
4955 5226 5.183140 CCATCCAAACCGGTTGAATATATCC 59.817 44.000 23.08 0.00 39.87 2.59
4956 5227 4.721132 TCCAAACCGGTTGAATATATCCC 58.279 43.478 23.08 0.00 39.87 3.85
4957 5228 3.500680 CCAAACCGGTTGAATATATCCCG 59.499 47.826 23.08 0.00 39.87 5.14
4958 5229 2.467566 ACCGGTTGAATATATCCCGC 57.532 50.000 0.00 0.00 37.37 6.13
4959 5230 1.337447 ACCGGTTGAATATATCCCGCG 60.337 52.381 0.00 0.00 37.37 6.46
4960 5231 0.719465 CGGTTGAATATATCCCGCGC 59.281 55.000 0.00 0.00 0.00 6.86
4961 5232 1.671850 CGGTTGAATATATCCCGCGCT 60.672 52.381 5.56 0.00 0.00 5.92
4962 5233 2.416296 CGGTTGAATATATCCCGCGCTA 60.416 50.000 5.56 0.00 0.00 4.26
4963 5234 2.928116 GGTTGAATATATCCCGCGCTAC 59.072 50.000 5.56 0.00 0.00 3.58
4964 5235 2.928116 GTTGAATATATCCCGCGCTACC 59.072 50.000 5.56 0.00 0.00 3.18
4965 5236 2.172679 TGAATATATCCCGCGCTACCA 58.827 47.619 5.56 0.00 0.00 3.25
4966 5237 2.764010 TGAATATATCCCGCGCTACCAT 59.236 45.455 5.56 0.00 0.00 3.55
4967 5238 3.181479 TGAATATATCCCGCGCTACCATC 60.181 47.826 5.56 0.00 0.00 3.51
4968 5239 2.139323 TATATCCCGCGCTACCATCT 57.861 50.000 5.56 0.00 0.00 2.90
4969 5240 0.818296 ATATCCCGCGCTACCATCTC 59.182 55.000 5.56 0.00 0.00 2.75
4970 5241 1.248785 TATCCCGCGCTACCATCTCC 61.249 60.000 5.56 0.00 0.00 3.71
4971 5242 4.301027 CCCGCGCTACCATCTCCC 62.301 72.222 5.56 0.00 0.00 4.30
4972 5243 3.536917 CCGCGCTACCATCTCCCA 61.537 66.667 5.56 0.00 0.00 4.37
4973 5244 2.279517 CGCGCTACCATCTCCCAC 60.280 66.667 5.56 0.00 0.00 4.61
4974 5245 2.109181 GCGCTACCATCTCCCACC 59.891 66.667 0.00 0.00 0.00 4.61
4975 5246 2.417516 CGCTACCATCTCCCACCG 59.582 66.667 0.00 0.00 0.00 4.94
4976 5247 2.822399 GCTACCATCTCCCACCGG 59.178 66.667 0.00 0.00 0.00 5.28
4977 5248 2.808206 GCTACCATCTCCCACCGGG 61.808 68.421 6.32 0.00 46.11 5.73
4978 5249 2.766651 TACCATCTCCCACCGGGC 60.767 66.667 6.32 0.00 43.94 6.13
4979 5250 3.627332 TACCATCTCCCACCGGGCA 62.627 63.158 6.32 0.00 43.94 5.36
4980 5251 4.181010 CCATCTCCCACCGGGCAG 62.181 72.222 6.32 0.00 43.94 4.85
4981 5252 3.083349 CATCTCCCACCGGGCAGA 61.083 66.667 6.32 0.85 43.94 4.26
4982 5253 2.040464 ATCTCCCACCGGGCAGAT 60.040 61.111 6.32 3.53 43.94 2.90
4983 5254 2.143419 ATCTCCCACCGGGCAGATC 61.143 63.158 6.32 0.00 43.94 2.75
4984 5255 3.866582 CTCCCACCGGGCAGATCC 61.867 72.222 6.32 0.00 43.94 3.36
4985 5256 4.731853 TCCCACCGGGCAGATCCA 62.732 66.667 6.32 0.00 43.94 3.41
4986 5257 4.181010 CCCACCGGGCAGATCCAG 62.181 72.222 6.32 0.00 35.35 3.86
4987 5258 3.402681 CCACCGGGCAGATCCAGT 61.403 66.667 6.32 0.00 36.21 4.00
4988 5259 2.063979 CCACCGGGCAGATCCAGTA 61.064 63.158 6.32 0.00 36.21 2.74
4989 5260 1.622607 CCACCGGGCAGATCCAGTAA 61.623 60.000 6.32 0.00 36.21 2.24
4990 5261 0.462047 CACCGGGCAGATCCAGTAAC 60.462 60.000 6.32 0.00 36.21 2.50
4991 5262 1.146263 CCGGGCAGATCCAGTAACC 59.854 63.158 0.00 0.00 36.21 2.85
4992 5263 1.622607 CCGGGCAGATCCAGTAACCA 61.623 60.000 0.00 0.00 36.21 3.67
4993 5264 0.251916 CGGGCAGATCCAGTAACCAA 59.748 55.000 0.00 0.00 36.21 3.67
4994 5265 1.339631 CGGGCAGATCCAGTAACCAAA 60.340 52.381 0.00 0.00 36.21 3.28
4995 5266 2.092323 GGGCAGATCCAGTAACCAAAC 58.908 52.381 0.00 0.00 36.21 2.93
4996 5267 1.737793 GGCAGATCCAGTAACCAAACG 59.262 52.381 0.00 0.00 34.01 3.60
4997 5268 1.130561 GCAGATCCAGTAACCAAACGC 59.869 52.381 0.00 0.00 0.00 4.84
4998 5269 2.699954 CAGATCCAGTAACCAAACGCT 58.300 47.619 0.00 0.00 0.00 5.07
4999 5270 2.673368 CAGATCCAGTAACCAAACGCTC 59.327 50.000 0.00 0.00 0.00 5.03
5000 5271 2.007608 GATCCAGTAACCAAACGCTCC 58.992 52.381 0.00 0.00 0.00 4.70
5001 5272 0.035739 TCCAGTAACCAAACGCTCCC 59.964 55.000 0.00 0.00 0.00 4.30
5002 5273 0.958876 CCAGTAACCAAACGCTCCCC 60.959 60.000 0.00 0.00 0.00 4.81
5003 5274 1.004200 AGTAACCAAACGCTCCCCG 60.004 57.895 0.00 0.00 44.21 5.73
5004 5275 2.036571 GTAACCAAACGCTCCCCGG 61.037 63.158 0.00 0.00 42.52 5.73
5005 5276 3.905437 TAACCAAACGCTCCCCGGC 62.905 63.158 0.00 0.00 42.52 6.13
5024 5295 2.395651 CTCCGTCGGAGTGAGTAGG 58.604 63.158 29.66 5.84 44.25 3.18
5025 5296 1.077930 TCCGTCGGAGTGAGTAGGG 60.078 63.158 10.71 0.00 0.00 3.53
5026 5297 1.077930 CCGTCGGAGTGAGTAGGGA 60.078 63.158 4.91 0.00 0.00 4.20
5027 5298 1.375098 CCGTCGGAGTGAGTAGGGAC 61.375 65.000 4.91 0.00 0.00 4.46
5028 5299 1.375098 CGTCGGAGTGAGTAGGGACC 61.375 65.000 0.00 0.00 0.00 4.46
5029 5300 0.323178 GTCGGAGTGAGTAGGGACCA 60.323 60.000 0.00 0.00 0.00 4.02
5030 5301 0.323178 TCGGAGTGAGTAGGGACCAC 60.323 60.000 0.00 0.00 0.00 4.16
5031 5302 0.611062 CGGAGTGAGTAGGGACCACA 60.611 60.000 0.00 0.00 32.33 4.17
5032 5303 1.867363 GGAGTGAGTAGGGACCACAT 58.133 55.000 0.00 0.00 32.33 3.21
5033 5304 2.685819 CGGAGTGAGTAGGGACCACATA 60.686 54.545 0.00 0.00 32.33 2.29
5034 5305 2.694109 GGAGTGAGTAGGGACCACATAC 59.306 54.545 0.00 0.00 32.33 2.39
5035 5306 2.358267 GAGTGAGTAGGGACCACATACG 59.642 54.545 0.00 0.00 32.33 3.06
5036 5307 1.407979 GTGAGTAGGGACCACATACGG 59.592 57.143 0.00 0.00 31.06 4.02
5037 5308 1.285667 TGAGTAGGGACCACATACGGA 59.714 52.381 0.00 0.00 0.00 4.69
5038 5309 2.091499 TGAGTAGGGACCACATACGGAT 60.091 50.000 0.00 0.00 0.00 4.18
5039 5310 2.557490 GAGTAGGGACCACATACGGATC 59.443 54.545 0.00 0.00 0.00 3.36
5040 5311 2.091499 AGTAGGGACCACATACGGATCA 60.091 50.000 0.00 0.00 0.00 2.92
5041 5312 1.874129 AGGGACCACATACGGATCAA 58.126 50.000 0.00 0.00 0.00 2.57
5042 5313 1.485066 AGGGACCACATACGGATCAAC 59.515 52.381 0.00 0.00 0.00 3.18
5043 5314 1.567504 GGACCACATACGGATCAACG 58.432 55.000 0.00 0.00 40.31 4.10
5044 5315 0.928229 GACCACATACGGATCAACGC 59.072 55.000 0.00 0.00 37.37 4.84
5045 5316 0.461339 ACCACATACGGATCAACGCC 60.461 55.000 0.00 0.00 37.37 5.68
5051 5322 2.202690 CGGATCAACGCCGTAGCA 60.203 61.111 0.00 0.00 43.66 3.49
5052 5323 2.514013 CGGATCAACGCCGTAGCAC 61.514 63.158 0.00 0.00 43.66 4.40
5053 5324 2.514013 GGATCAACGCCGTAGCACG 61.514 63.158 0.00 2.27 42.11 5.34
5064 5335 2.288961 CGTAGCACGGAATACAACCT 57.711 50.000 1.40 0.00 38.08 3.50
5065 5336 1.924524 CGTAGCACGGAATACAACCTG 59.075 52.381 1.40 0.00 38.08 4.00
5066 5337 1.664151 GTAGCACGGAATACAACCTGC 59.336 52.381 0.00 0.00 34.38 4.85
5067 5338 0.036164 AGCACGGAATACAACCTGCA 59.964 50.000 0.00 0.00 35.58 4.41
5068 5339 0.878416 GCACGGAATACAACCTGCAA 59.122 50.000 0.00 0.00 34.36 4.08
5069 5340 1.268352 GCACGGAATACAACCTGCAAA 59.732 47.619 0.00 0.00 34.36 3.68
5070 5341 2.287909 GCACGGAATACAACCTGCAAAA 60.288 45.455 0.00 0.00 34.36 2.44
5071 5342 3.797184 GCACGGAATACAACCTGCAAAAA 60.797 43.478 0.00 0.00 34.36 1.94
5112 5383 8.364129 TCTGTTAAAAACCAAATCATTTCTGC 57.636 30.769 0.00 0.00 0.00 4.26
5113 5384 7.984050 TCTGTTAAAAACCAAATCATTTCTGCA 59.016 29.630 0.00 0.00 0.00 4.41
5114 5385 8.140677 TGTTAAAAACCAAATCATTTCTGCAG 57.859 30.769 7.63 7.63 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 9.042477 AGCTAAGCTGAGATTGTTAGAGCATCT 62.042 40.741 0.74 0.00 43.84 2.90
13 14 5.177327 GCTAAGCTGAGATTGTTAGAGCATC 59.823 44.000 0.74 0.00 31.80 3.91
14 15 5.055812 GCTAAGCTGAGATTGTTAGAGCAT 58.944 41.667 0.74 0.00 31.80 3.79
15 16 4.161189 AGCTAAGCTGAGATTGTTAGAGCA 59.839 41.667 0.74 0.00 37.57 4.26
16 17 4.692228 AGCTAAGCTGAGATTGTTAGAGC 58.308 43.478 0.74 0.00 37.57 4.09
17 18 6.147864 AGAGCTAAGCTGAGATTGTTAGAG 57.852 41.667 0.74 0.00 39.88 2.43
18 19 6.379703 AGAAGAGCTAAGCTGAGATTGTTAGA 59.620 38.462 0.74 0.00 39.88 2.10
19 20 6.572519 AGAAGAGCTAAGCTGAGATTGTTAG 58.427 40.000 0.74 0.00 39.88 2.34
2313 2416 6.323739 AGAGGGTATTCTTTTCTTTTGCACAA 59.676 34.615 0.00 0.00 0.00 3.33
2347 2453 1.221909 TGCTCCTCCTCCAGGTAGGA 61.222 60.000 11.28 11.28 46.75 2.94
2434 2549 3.037833 GCGCCTTTTTGCACTGCC 61.038 61.111 0.00 0.00 0.00 4.85
2448 2563 1.142778 GCTCTACTGTACAGCTGCGC 61.143 60.000 22.90 16.93 0.00 6.09
2643 2799 9.727859 ATGTGACATAGTAGTAGTACAGGATAG 57.272 37.037 10.33 0.00 0.00 2.08
2650 2806 7.282675 ACCAGTGATGTGACATAGTAGTAGTAC 59.717 40.741 0.00 0.00 0.00 2.73
2678 2834 7.672983 ATTGTTTGTGAGTAACCATCTACTG 57.327 36.000 0.00 0.00 32.14 2.74
2683 2839 9.061610 CGATTTAATTGTTTGTGAGTAACCATC 57.938 33.333 0.00 0.00 0.00 3.51
2684 2840 8.573035 ACGATTTAATTGTTTGTGAGTAACCAT 58.427 29.630 0.00 0.00 0.00 3.55
2687 2843 7.858879 ACCACGATTTAATTGTTTGTGAGTAAC 59.141 33.333 0.00 0.00 0.00 2.50
2688 2844 7.932335 ACCACGATTTAATTGTTTGTGAGTAA 58.068 30.769 0.00 0.00 0.00 2.24
2689 2845 7.499321 ACCACGATTTAATTGTTTGTGAGTA 57.501 32.000 0.00 0.00 0.00 2.59
2690 2846 6.385649 ACCACGATTTAATTGTTTGTGAGT 57.614 33.333 0.00 1.97 0.00 3.41
2695 2851 6.582295 CCTCTGAACCACGATTTAATTGTTTG 59.418 38.462 0.00 0.00 0.00 2.93
2911 3085 6.012658 TCCATACGTACGACAAGTAAAACT 57.987 37.500 24.41 0.00 37.02 2.66
2912 3086 6.308766 ACATCCATACGTACGACAAGTAAAAC 59.691 38.462 24.41 0.00 37.02 2.43
2915 3089 5.565592 ACATCCATACGTACGACAAGTAA 57.434 39.130 24.41 1.13 37.02 2.24
2917 3091 5.278169 GGATACATCCATACGTACGACAAGT 60.278 44.000 24.41 12.48 46.38 3.16
2918 3092 5.152097 GGATACATCCATACGTACGACAAG 58.848 45.833 24.41 7.99 46.38 3.16
2919 3093 5.112220 GGATACATCCATACGTACGACAA 57.888 43.478 24.41 7.24 46.38 3.18
2920 3094 4.754372 GGATACATCCATACGTACGACA 57.246 45.455 24.41 9.64 46.38 4.35
2953 3127 9.632807 GTCGCTGAAATGAATATATCTAGAACT 57.367 33.333 0.00 0.00 0.00 3.01
2954 3128 8.579600 CGTCGCTGAAATGAATATATCTAGAAC 58.420 37.037 0.00 0.00 0.00 3.01
2955 3129 8.512138 TCGTCGCTGAAATGAATATATCTAGAA 58.488 33.333 0.00 0.00 0.00 2.10
2956 3130 8.040716 TCGTCGCTGAAATGAATATATCTAGA 57.959 34.615 0.00 0.00 0.00 2.43
2957 3131 7.965655 ACTCGTCGCTGAAATGAATATATCTAG 59.034 37.037 0.00 0.00 0.00 2.43
2958 3132 7.817641 ACTCGTCGCTGAAATGAATATATCTA 58.182 34.615 0.00 0.00 0.00 1.98
2959 3133 6.682746 ACTCGTCGCTGAAATGAATATATCT 58.317 36.000 0.00 0.00 0.00 1.98
2960 3134 6.936222 ACTCGTCGCTGAAATGAATATATC 57.064 37.500 0.00 0.00 0.00 1.63
2961 3135 8.988064 ATTACTCGTCGCTGAAATGAATATAT 57.012 30.769 0.00 0.00 0.00 0.86
2962 3136 8.812147 AATTACTCGTCGCTGAAATGAATATA 57.188 30.769 0.00 0.00 0.00 0.86
2963 3137 7.715265 AATTACTCGTCGCTGAAATGAATAT 57.285 32.000 0.00 0.00 0.00 1.28
2964 3138 7.398746 CAAATTACTCGTCGCTGAAATGAATA 58.601 34.615 0.00 0.00 0.00 1.75
2965 3139 6.250819 CAAATTACTCGTCGCTGAAATGAAT 58.749 36.000 0.00 0.00 0.00 2.57
2966 3140 5.390461 CCAAATTACTCGTCGCTGAAATGAA 60.390 40.000 0.00 0.00 0.00 2.57
2967 3141 4.092821 CCAAATTACTCGTCGCTGAAATGA 59.907 41.667 0.00 0.00 0.00 2.57
2968 3142 4.092821 TCCAAATTACTCGTCGCTGAAATG 59.907 41.667 0.00 0.00 0.00 2.32
2969 3143 4.250464 TCCAAATTACTCGTCGCTGAAAT 58.750 39.130 0.00 0.00 0.00 2.17
2970 3144 3.655486 TCCAAATTACTCGTCGCTGAAA 58.345 40.909 0.00 0.00 0.00 2.69
2971 3145 3.306917 TCCAAATTACTCGTCGCTGAA 57.693 42.857 0.00 0.00 0.00 3.02
2972 3146 2.991190 GTTCCAAATTACTCGTCGCTGA 59.009 45.455 0.00 0.00 0.00 4.26
2973 3147 2.222508 CGTTCCAAATTACTCGTCGCTG 60.223 50.000 0.00 0.00 0.00 5.18
2974 3148 1.990563 CGTTCCAAATTACTCGTCGCT 59.009 47.619 0.00 0.00 0.00 4.93
2975 3149 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
2976 3150 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2977 3151 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2978 3152 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2979 3153 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2980 3154 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2981 3155 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2982 3156 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2983 3157 3.119029 CGTACTCCCTCCGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
2984 3158 2.354403 CGTACTCCCTCCGTTCCAAATT 60.354 50.000 0.00 0.00 0.00 1.82
2985 3159 1.206371 CGTACTCCCTCCGTTCCAAAT 59.794 52.381 0.00 0.00 0.00 2.32
2986 3160 0.604578 CGTACTCCCTCCGTTCCAAA 59.395 55.000 0.00 0.00 0.00 3.28
2987 3161 0.540365 ACGTACTCCCTCCGTTCCAA 60.540 55.000 0.00 0.00 0.00 3.53
2988 3162 0.327924 TACGTACTCCCTCCGTTCCA 59.672 55.000 0.00 0.00 36.12 3.53
2989 3163 1.463674 TTACGTACTCCCTCCGTTCC 58.536 55.000 0.00 0.00 36.12 3.62
2990 3164 5.703130 ACTATATTACGTACTCCCTCCGTTC 59.297 44.000 0.00 0.00 36.12 3.95
2991 3165 5.471456 CACTATATTACGTACTCCCTCCGTT 59.529 44.000 0.00 0.00 36.12 4.44
2994 3168 7.164803 AGTACACTATATTACGTACTCCCTCC 58.835 42.308 0.00 0.00 40.29 4.30
3011 3185 7.728148 TCTTTGTGTTTGGTGATAGTACACTA 58.272 34.615 0.00 0.00 39.73 2.74
3018 3192 5.063204 TGGTCTCTTTGTGTTTGGTGATAG 58.937 41.667 0.00 0.00 0.00 2.08
3019 3193 5.042463 TGGTCTCTTTGTGTTTGGTGATA 57.958 39.130 0.00 0.00 0.00 2.15
3020 3194 3.897239 TGGTCTCTTTGTGTTTGGTGAT 58.103 40.909 0.00 0.00 0.00 3.06
3101 3279 0.042431 AGCTCACCTCCTGACCTGAT 59.958 55.000 0.00 0.00 0.00 2.90
3103 3281 0.902048 TCAGCTCACCTCCTGACCTG 60.902 60.000 0.00 0.00 34.84 4.00
3110 3288 3.823304 AGATTGTTTTTCAGCTCACCTCC 59.177 43.478 0.00 0.00 0.00 4.30
3148 3326 4.142271 ACCGCTTATCTGAAACAGAGAGAG 60.142 45.833 14.55 12.05 44.08 3.20
3149 3327 3.764434 ACCGCTTATCTGAAACAGAGAGA 59.236 43.478 14.55 0.00 44.08 3.10
3150 3328 3.862267 CACCGCTTATCTGAAACAGAGAG 59.138 47.826 7.50 8.47 44.08 3.20
3344 3546 5.296035 TCTGCAGAGCAATGAATGTTCTATG 59.704 40.000 13.74 0.00 46.57 2.23
3402 3604 0.309612 AAAACGCCAAGTTACAGCCG 59.690 50.000 0.00 0.00 43.37 5.52
3435 3639 6.299805 TCTGGAGCTAGCTTTCATTTCTTA 57.700 37.500 20.42 0.00 0.00 2.10
3438 3642 4.514816 GGATCTGGAGCTAGCTTTCATTTC 59.485 45.833 20.42 16.93 0.00 2.17
3551 3799 1.665916 GCAACACGAGCAGCTCTCA 60.666 57.895 20.39 0.00 41.98 3.27
3552 3800 1.665916 TGCAACACGAGCAGCTCTC 60.666 57.895 20.39 0.00 37.02 3.20
3553 3801 1.958205 GTGCAACACGAGCAGCTCT 60.958 57.895 20.39 4.77 43.63 4.09
3554 3802 2.553268 GTGCAACACGAGCAGCTC 59.447 61.111 12.94 12.94 43.63 4.09
3563 3811 0.855670 CACAACACGACGTGCAACAC 60.856 55.000 27.11 0.00 36.98 3.32
3564 3812 1.421877 CACAACACGACGTGCAACA 59.578 52.632 27.11 0.00 36.98 3.33
3565 3813 4.262063 CACAACACGACGTGCAAC 57.738 55.556 27.11 0.00 36.98 4.17
3569 3817 1.154854 CATCGCACAACACGACGTG 60.155 57.895 25.72 25.72 43.23 4.49
3620 3868 1.896220 TCCTCCTGCATTGACACAAC 58.104 50.000 0.00 0.00 0.00 3.32
3648 3896 2.295472 CTTCGAGCAGCTCCTCCAGG 62.295 65.000 17.16 1.53 0.00 4.45
3728 3976 6.874278 TCAATCTGAAGGAAGGATAGACAA 57.126 37.500 0.00 0.00 0.00 3.18
3733 3981 9.532494 TTTCAATTTCAATCTGAAGGAAGGATA 57.468 29.630 0.00 0.00 37.70 2.59
3747 3995 8.870160 TCGTTCAGACATTTTTCAATTTCAAT 57.130 26.923 0.00 0.00 0.00 2.57
3781 4031 1.268899 CAACCTGAAGCAAGCAAGGAG 59.731 52.381 13.27 4.34 0.00 3.69
3995 4252 3.118702 AGTCTCATTGGTCAGATGCAGAG 60.119 47.826 0.00 0.00 0.00 3.35
4009 4266 3.484407 AGCAGAAACAAGCAGTCTCATT 58.516 40.909 0.00 0.00 0.00 2.57
4164 4422 4.460034 TCAGAGTTAAACACATGCATGCAT 59.540 37.500 27.46 27.46 37.08 3.96
4165 4423 3.819902 TCAGAGTTAAACACATGCATGCA 59.180 39.130 26.53 25.04 0.00 3.96
4166 4424 4.424061 TCAGAGTTAAACACATGCATGC 57.576 40.909 26.53 11.82 0.00 4.06
4199 4461 3.003394 TCATGAACTCCAAATCCGCAT 57.997 42.857 0.00 0.00 0.00 4.73
4200 4462 2.488204 TCATGAACTCCAAATCCGCA 57.512 45.000 0.00 0.00 0.00 5.69
4201 4463 3.378112 TCAATCATGAACTCCAAATCCGC 59.622 43.478 0.00 0.00 30.99 5.54
4214 4476 4.280819 GGAAACCCCTTCATCAATCATGA 58.719 43.478 0.00 0.00 39.99 3.07
4217 4479 2.041081 ACGGAAACCCCTTCATCAATCA 59.959 45.455 0.00 0.00 35.55 2.57
4357 4619 1.402984 CGCCGATGCTCTAATAGGGAC 60.403 57.143 0.00 0.00 34.43 4.46
4375 4637 2.866085 AAGCAGGCAGAGATGGACGC 62.866 60.000 0.00 0.00 0.00 5.19
4387 4655 5.463724 CAGCAGTAGTACTAATTAAGCAGGC 59.536 44.000 3.61 1.42 0.00 4.85
4408 4676 0.107993 TGACTGATACCAGCAGCAGC 60.108 55.000 0.00 0.00 44.16 5.25
4505 4776 3.194329 TCTCGATTCAATGCTCAGTCTGT 59.806 43.478 0.00 0.00 0.00 3.41
4524 4795 1.694696 AGAGAAACACCCACACCTCTC 59.305 52.381 0.00 0.00 0.00 3.20
4534 4805 4.703575 GGGTAATGGGTTTAGAGAAACACC 59.296 45.833 0.62 0.64 46.70 4.16
4548 4819 1.278127 CCATAGCGTAGGGGTAATGGG 59.722 57.143 0.00 0.00 31.32 4.00
4571 4842 7.678194 ATACAAACATGAAAGACACAAAACG 57.322 32.000 0.00 0.00 0.00 3.60
4736 5007 4.570874 GCAGAGGCCGGGGAATCC 62.571 72.222 2.18 0.00 0.00 3.01
4737 5008 3.125376 ATGCAGAGGCCGGGGAATC 62.125 63.158 2.18 0.00 40.13 2.52
4738 5009 3.099170 ATGCAGAGGCCGGGGAAT 61.099 61.111 2.18 0.00 40.13 3.01
4739 5010 3.797353 GATGCAGAGGCCGGGGAA 61.797 66.667 2.18 0.00 40.13 3.97
4741 5012 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
4742 5013 4.559063 CCTGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
4743 5014 3.790437 ACCTGATGCAGAGGCCGG 61.790 66.667 13.39 0.00 40.13 6.13
4744 5015 2.513204 CACCTGATGCAGAGGCCG 60.513 66.667 13.39 3.02 40.13 6.13
4745 5016 1.992519 ATCCACCTGATGCAGAGGCC 61.993 60.000 13.39 0.00 40.13 5.19
4746 5017 0.818445 CATCCACCTGATGCAGAGGC 60.818 60.000 13.39 0.00 44.16 4.70
4747 5018 3.398694 CATCCACCTGATGCAGAGG 57.601 57.895 12.14 12.14 44.16 3.69
4754 5025 0.250467 GCCGTATGCATCCACCTGAT 60.250 55.000 0.19 0.00 40.77 2.90
4755 5026 1.146041 GCCGTATGCATCCACCTGA 59.854 57.895 0.19 0.00 40.77 3.86
4756 5027 1.893808 GGCCGTATGCATCCACCTG 60.894 63.158 0.19 0.00 43.89 4.00
4757 5028 2.374525 TGGCCGTATGCATCCACCT 61.375 57.895 0.19 0.00 43.89 4.00
4758 5029 2.186826 GTGGCCGTATGCATCCACC 61.187 63.158 19.75 11.28 42.25 4.61
4759 5030 0.748005 AAGTGGCCGTATGCATCCAC 60.748 55.000 21.88 21.88 46.93 4.02
4760 5031 0.833949 TAAGTGGCCGTATGCATCCA 59.166 50.000 0.19 0.56 43.89 3.41
4761 5032 1.070134 TCTAAGTGGCCGTATGCATCC 59.930 52.381 0.19 0.00 43.89 3.51
4762 5033 2.526304 TCTAAGTGGCCGTATGCATC 57.474 50.000 0.19 0.00 43.89 3.91
4763 5034 4.617253 TTATCTAAGTGGCCGTATGCAT 57.383 40.909 3.79 3.79 43.89 3.96
4764 5035 4.409718 TTTATCTAAGTGGCCGTATGCA 57.590 40.909 0.00 0.00 43.89 3.96
4765 5036 7.429636 TTTATTTATCTAAGTGGCCGTATGC 57.570 36.000 0.00 0.00 40.16 3.14
4768 5039 9.715121 CCTATTTTATTTATCTAAGTGGCCGTA 57.285 33.333 0.00 0.00 0.00 4.02
4769 5040 8.215736 ACCTATTTTATTTATCTAAGTGGCCGT 58.784 33.333 0.00 0.00 0.00 5.68
4770 5041 8.617290 ACCTATTTTATTTATCTAAGTGGCCG 57.383 34.615 0.00 0.00 0.00 6.13
4786 5057 9.672086 CTTTTCGACATTGTTGAACCTATTTTA 57.328 29.630 17.28 0.16 35.90 1.52
4787 5058 8.194769 ACTTTTCGACATTGTTGAACCTATTTT 58.805 29.630 17.28 0.00 35.90 1.82
4788 5059 7.712797 ACTTTTCGACATTGTTGAACCTATTT 58.287 30.769 17.28 0.00 35.90 1.40
4789 5060 7.272037 ACTTTTCGACATTGTTGAACCTATT 57.728 32.000 17.28 0.77 35.90 1.73
4790 5061 6.877611 ACTTTTCGACATTGTTGAACCTAT 57.122 33.333 17.28 3.37 35.90 2.57
4791 5062 6.295039 GACTTTTCGACATTGTTGAACCTA 57.705 37.500 17.28 2.79 35.90 3.08
4792 5063 5.169836 GACTTTTCGACATTGTTGAACCT 57.830 39.130 17.28 4.77 35.90 3.50
4804 5075 7.513660 ACGTAGTTTCTTTTACGACTTTTCGAC 60.514 37.037 10.55 0.00 44.47 4.20
4805 5076 6.472163 ACGTAGTTTCTTTTACGACTTTTCGA 59.528 34.615 10.55 0.00 44.47 3.71
4806 5077 6.630931 ACGTAGTTTCTTTTACGACTTTTCG 58.369 36.000 10.55 0.00 46.70 3.46
4823 5094 6.847422 GGTCTTTGTGAGCTCGACGTAGTT 62.847 50.000 9.64 0.00 39.86 2.24
4824 5095 5.448237 GGTCTTTGTGAGCTCGACGTAGT 62.448 52.174 9.64 0.00 41.59 2.73
4825 5096 2.243407 GTCTTTGTGAGCTCGACGTAG 58.757 52.381 9.64 9.40 0.00 3.51
4826 5097 1.068748 GGTCTTTGTGAGCTCGACGTA 60.069 52.381 9.64 0.00 39.86 3.57
4827 5098 0.318784 GGTCTTTGTGAGCTCGACGT 60.319 55.000 9.64 0.00 39.86 4.34
4828 5099 2.435741 GGTCTTTGTGAGCTCGACG 58.564 57.895 9.64 0.00 39.86 5.12
4834 5105 1.140816 GTGACGAGGTCTTTGTGAGC 58.859 55.000 0.00 0.00 43.05 4.26
4835 5106 2.509052 TGTGACGAGGTCTTTGTGAG 57.491 50.000 0.00 0.00 33.15 3.51
4836 5107 2.971660 TTGTGACGAGGTCTTTGTGA 57.028 45.000 0.00 0.00 33.15 3.58
4837 5108 4.349663 TTTTTGTGACGAGGTCTTTGTG 57.650 40.909 0.00 0.00 33.15 3.33
4861 5132 2.629002 CCGGTTGTGGCTATATGGC 58.371 57.895 1.74 1.74 42.18 4.40
4870 5141 4.641645 TCTGCCAGCCGGTTGTGG 62.642 66.667 17.69 15.43 36.85 4.17
4871 5142 1.733402 TTTTCTGCCAGCCGGTTGTG 61.733 55.000 17.69 9.73 33.28 3.33
4872 5143 1.040339 TTTTTCTGCCAGCCGGTTGT 61.040 50.000 17.69 0.00 33.28 3.32
4873 5144 0.318120 ATTTTTCTGCCAGCCGGTTG 59.682 50.000 11.98 11.98 33.28 3.77
4874 5145 1.818674 CTATTTTTCTGCCAGCCGGTT 59.181 47.619 1.90 0.00 33.28 4.44
4875 5146 1.463674 CTATTTTTCTGCCAGCCGGT 58.536 50.000 1.90 0.00 33.28 5.28
4876 5147 0.740737 CCTATTTTTCTGCCAGCCGG 59.259 55.000 0.00 0.00 0.00 6.13
4877 5148 1.463674 ACCTATTTTTCTGCCAGCCG 58.536 50.000 0.00 0.00 0.00 5.52
4878 5149 3.319122 CCATACCTATTTTTCTGCCAGCC 59.681 47.826 0.00 0.00 0.00 4.85
4879 5150 4.207165 TCCATACCTATTTTTCTGCCAGC 58.793 43.478 0.00 0.00 0.00 4.85
4880 5151 6.378280 AGTTTCCATACCTATTTTTCTGCCAG 59.622 38.462 0.00 0.00 0.00 4.85
4881 5152 6.252995 AGTTTCCATACCTATTTTTCTGCCA 58.747 36.000 0.00 0.00 0.00 4.92
4882 5153 6.775594 AGTTTCCATACCTATTTTTCTGCC 57.224 37.500 0.00 0.00 0.00 4.85
4886 5157 9.529325 GGCAATTAGTTTCCATACCTATTTTTC 57.471 33.333 0.00 0.00 0.00 2.29
4887 5158 9.267071 AGGCAATTAGTTTCCATACCTATTTTT 57.733 29.630 0.00 0.00 0.00 1.94
4888 5159 8.838649 AGGCAATTAGTTTCCATACCTATTTT 57.161 30.769 0.00 0.00 0.00 1.82
4890 5161 9.740710 GATAGGCAATTAGTTTCCATACCTATT 57.259 33.333 0.00 0.00 37.93 1.73
4891 5162 8.329502 GGATAGGCAATTAGTTTCCATACCTAT 58.670 37.037 0.00 0.00 39.93 2.57
4892 5163 7.516209 AGGATAGGCAATTAGTTTCCATACCTA 59.484 37.037 0.00 0.00 0.00 3.08
4893 5164 6.332901 AGGATAGGCAATTAGTTTCCATACCT 59.667 38.462 0.00 0.00 0.00 3.08
4894 5165 6.543735 AGGATAGGCAATTAGTTTCCATACC 58.456 40.000 0.00 0.00 0.00 2.73
4895 5166 9.740710 AATAGGATAGGCAATTAGTTTCCATAC 57.259 33.333 0.00 0.00 0.00 2.39
4897 5168 9.740710 GTAATAGGATAGGCAATTAGTTTCCAT 57.259 33.333 0.00 0.00 0.00 3.41
4898 5169 8.719596 TGTAATAGGATAGGCAATTAGTTTCCA 58.280 33.333 0.00 0.00 0.00 3.53
4899 5170 9.740710 ATGTAATAGGATAGGCAATTAGTTTCC 57.259 33.333 0.00 0.00 0.00 3.13
4902 5173 9.726438 GTCATGTAATAGGATAGGCAATTAGTT 57.274 33.333 0.00 0.00 0.00 2.24
4903 5174 8.322091 GGTCATGTAATAGGATAGGCAATTAGT 58.678 37.037 0.00 0.00 0.00 2.24
4904 5175 7.492669 CGGTCATGTAATAGGATAGGCAATTAG 59.507 40.741 0.00 0.00 0.00 1.73
4905 5176 7.327975 CGGTCATGTAATAGGATAGGCAATTA 58.672 38.462 0.00 0.00 0.00 1.40
4906 5177 6.173339 CGGTCATGTAATAGGATAGGCAATT 58.827 40.000 0.00 0.00 0.00 2.32
4907 5178 5.734720 CGGTCATGTAATAGGATAGGCAAT 58.265 41.667 0.00 0.00 0.00 3.56
4908 5179 4.562757 GCGGTCATGTAATAGGATAGGCAA 60.563 45.833 0.00 0.00 0.00 4.52
4909 5180 3.056107 GCGGTCATGTAATAGGATAGGCA 60.056 47.826 0.00 0.00 0.00 4.75
4910 5181 3.522553 GCGGTCATGTAATAGGATAGGC 58.477 50.000 0.00 0.00 0.00 3.93
4911 5182 3.513912 TGGCGGTCATGTAATAGGATAGG 59.486 47.826 0.00 0.00 0.00 2.57
4912 5183 4.801330 TGGCGGTCATGTAATAGGATAG 57.199 45.455 0.00 0.00 0.00 2.08
4913 5184 4.161565 GGATGGCGGTCATGTAATAGGATA 59.838 45.833 0.00 0.00 35.97 2.59
4914 5185 3.055094 GGATGGCGGTCATGTAATAGGAT 60.055 47.826 0.00 0.00 35.97 3.24
4915 5186 2.301870 GGATGGCGGTCATGTAATAGGA 59.698 50.000 0.00 0.00 35.97 2.94
4916 5187 2.038426 TGGATGGCGGTCATGTAATAGG 59.962 50.000 0.00 0.00 35.97 2.57
4917 5188 3.401033 TGGATGGCGGTCATGTAATAG 57.599 47.619 0.00 0.00 35.97 1.73
4918 5189 3.847671 TTGGATGGCGGTCATGTAATA 57.152 42.857 0.00 0.00 35.97 0.98
4919 5190 2.687935 GTTTGGATGGCGGTCATGTAAT 59.312 45.455 0.00 0.00 35.97 1.89
4920 5191 2.088423 GTTTGGATGGCGGTCATGTAA 58.912 47.619 0.00 0.00 35.97 2.41
4921 5192 1.680555 GGTTTGGATGGCGGTCATGTA 60.681 52.381 0.00 0.00 35.97 2.29
4922 5193 0.965363 GGTTTGGATGGCGGTCATGT 60.965 55.000 0.00 0.00 35.97 3.21
4923 5194 1.809207 GGTTTGGATGGCGGTCATG 59.191 57.895 0.00 0.00 35.97 3.07
4924 5195 1.748879 CGGTTTGGATGGCGGTCAT 60.749 57.895 0.00 0.00 39.13 3.06
4925 5196 2.359354 CGGTTTGGATGGCGGTCA 60.359 61.111 0.00 0.00 0.00 4.02
4926 5197 3.131478 CCGGTTTGGATGGCGGTC 61.131 66.667 0.00 0.00 42.00 4.79
4927 5198 3.501040 AACCGGTTTGGATGGCGGT 62.501 57.895 15.86 0.00 42.00 5.68
4928 5199 2.675075 AACCGGTTTGGATGGCGG 60.675 61.111 15.86 0.00 42.00 6.13
4929 5200 1.519751 TTCAACCGGTTTGGATGGCG 61.520 55.000 19.55 3.62 40.78 5.69
4930 5201 0.894835 ATTCAACCGGTTTGGATGGC 59.105 50.000 19.55 0.00 40.78 4.40
4931 5202 5.183140 GGATATATTCAACCGGTTTGGATGG 59.817 44.000 19.55 5.30 40.78 3.51
4932 5203 5.183140 GGGATATATTCAACCGGTTTGGATG 59.817 44.000 19.55 7.05 41.73 3.51
4933 5204 5.321927 GGGATATATTCAACCGGTTTGGAT 58.678 41.667 19.55 15.43 42.00 3.41
4934 5205 4.721132 GGGATATATTCAACCGGTTTGGA 58.279 43.478 19.55 10.51 42.00 3.53
4935 5206 3.500680 CGGGATATATTCAACCGGTTTGG 59.499 47.826 19.55 7.84 46.41 3.28
4936 5207 3.058501 GCGGGATATATTCAACCGGTTTG 60.059 47.826 19.55 13.53 44.39 2.93
4937 5208 3.143728 GCGGGATATATTCAACCGGTTT 58.856 45.455 19.55 6.11 44.39 3.27
4938 5209 2.774687 GCGGGATATATTCAACCGGTT 58.225 47.619 15.86 15.86 44.39 4.44
4939 5210 1.337447 CGCGGGATATATTCAACCGGT 60.337 52.381 0.00 0.00 44.39 5.28
4940 5211 1.355971 CGCGGGATATATTCAACCGG 58.644 55.000 0.00 0.00 44.39 5.28
4941 5212 0.719465 GCGCGGGATATATTCAACCG 59.281 55.000 8.83 12.10 46.78 4.44
4942 5213 2.094762 AGCGCGGGATATATTCAACC 57.905 50.000 8.83 0.00 0.00 3.77
4943 5214 2.928116 GGTAGCGCGGGATATATTCAAC 59.072 50.000 8.83 0.00 0.00 3.18
4944 5215 2.563620 TGGTAGCGCGGGATATATTCAA 59.436 45.455 8.83 0.00 0.00 2.69
4945 5216 2.172679 TGGTAGCGCGGGATATATTCA 58.827 47.619 8.83 0.00 0.00 2.57
4946 5217 2.953466 TGGTAGCGCGGGATATATTC 57.047 50.000 8.83 0.00 0.00 1.75
4947 5218 3.031736 AGATGGTAGCGCGGGATATATT 58.968 45.455 8.83 0.00 0.00 1.28
4948 5219 2.623889 GAGATGGTAGCGCGGGATATAT 59.376 50.000 8.83 0.10 0.00 0.86
4949 5220 2.022195 GAGATGGTAGCGCGGGATATA 58.978 52.381 8.83 0.00 0.00 0.86
4950 5221 0.818296 GAGATGGTAGCGCGGGATAT 59.182 55.000 8.83 0.00 0.00 1.63
4951 5222 1.248785 GGAGATGGTAGCGCGGGATA 61.249 60.000 8.83 0.00 0.00 2.59
4952 5223 2.574955 GGAGATGGTAGCGCGGGAT 61.575 63.158 8.83 0.00 0.00 3.85
4953 5224 3.224324 GGAGATGGTAGCGCGGGA 61.224 66.667 8.83 0.00 0.00 5.14
4954 5225 4.301027 GGGAGATGGTAGCGCGGG 62.301 72.222 8.83 0.00 0.00 6.13
4955 5226 3.536917 TGGGAGATGGTAGCGCGG 61.537 66.667 8.83 0.00 0.00 6.46
4956 5227 2.279517 GTGGGAGATGGTAGCGCG 60.280 66.667 0.00 0.00 0.00 6.86
4957 5228 2.109181 GGTGGGAGATGGTAGCGC 59.891 66.667 0.00 0.00 0.00 5.92
4958 5229 2.417516 CGGTGGGAGATGGTAGCG 59.582 66.667 0.00 0.00 0.00 4.26
4959 5230 2.822399 CCGGTGGGAGATGGTAGC 59.178 66.667 0.00 0.00 34.06 3.58
4970 5241 1.622607 TTACTGGATCTGCCCGGTGG 61.623 60.000 0.00 0.00 45.03 4.61
4971 5242 0.462047 GTTACTGGATCTGCCCGGTG 60.462 60.000 0.00 0.00 45.03 4.94
4972 5243 1.623542 GGTTACTGGATCTGCCCGGT 61.624 60.000 0.00 0.00 46.86 5.28
4973 5244 1.146263 GGTTACTGGATCTGCCCGG 59.854 63.158 0.00 0.00 38.55 5.73
4974 5245 0.251916 TTGGTTACTGGATCTGCCCG 59.748 55.000 0.00 0.00 34.97 6.13
4975 5246 2.092323 GTTTGGTTACTGGATCTGCCC 58.908 52.381 0.00 0.00 34.97 5.36
4976 5247 1.737793 CGTTTGGTTACTGGATCTGCC 59.262 52.381 0.00 0.00 37.10 4.85
4977 5248 1.130561 GCGTTTGGTTACTGGATCTGC 59.869 52.381 0.00 0.00 0.00 4.26
4978 5249 2.673368 GAGCGTTTGGTTACTGGATCTG 59.327 50.000 0.00 0.00 0.00 2.90
4979 5250 2.354805 GGAGCGTTTGGTTACTGGATCT 60.355 50.000 0.00 0.00 0.00 2.75
4980 5251 2.007608 GGAGCGTTTGGTTACTGGATC 58.992 52.381 0.00 0.00 0.00 3.36
4981 5252 1.339727 GGGAGCGTTTGGTTACTGGAT 60.340 52.381 0.00 0.00 0.00 3.41
4982 5253 0.035739 GGGAGCGTTTGGTTACTGGA 59.964 55.000 0.00 0.00 0.00 3.86
4983 5254 0.958876 GGGGAGCGTTTGGTTACTGG 60.959 60.000 0.00 0.00 0.00 4.00
4984 5255 1.296056 CGGGGAGCGTTTGGTTACTG 61.296 60.000 0.00 0.00 0.00 2.74
4985 5256 1.004200 CGGGGAGCGTTTGGTTACT 60.004 57.895 0.00 0.00 0.00 2.24
4986 5257 2.036571 CCGGGGAGCGTTTGGTTAC 61.037 63.158 0.00 0.00 0.00 2.50
4987 5258 2.348243 CCGGGGAGCGTTTGGTTA 59.652 61.111 0.00 0.00 0.00 2.85
5007 5278 1.077930 CCCTACTCACTCCGACGGA 60.078 63.158 17.28 17.28 0.00 4.69
5008 5279 1.077930 TCCCTACTCACTCCGACGG 60.078 63.158 7.84 7.84 0.00 4.79
5009 5280 1.375098 GGTCCCTACTCACTCCGACG 61.375 65.000 0.00 0.00 0.00 5.12
5010 5281 0.323178 TGGTCCCTACTCACTCCGAC 60.323 60.000 0.00 0.00 0.00 4.79
5011 5282 0.323178 GTGGTCCCTACTCACTCCGA 60.323 60.000 0.00 0.00 0.00 4.55
5012 5283 0.611062 TGTGGTCCCTACTCACTCCG 60.611 60.000 0.00 0.00 31.73 4.63
5013 5284 1.867363 ATGTGGTCCCTACTCACTCC 58.133 55.000 0.00 0.00 31.73 3.85
5014 5285 2.358267 CGTATGTGGTCCCTACTCACTC 59.642 54.545 0.00 0.00 31.73 3.51
5015 5286 2.376109 CGTATGTGGTCCCTACTCACT 58.624 52.381 0.00 0.00 31.73 3.41
5016 5287 1.407979 CCGTATGTGGTCCCTACTCAC 59.592 57.143 0.00 0.00 0.00 3.51
5017 5288 1.285667 TCCGTATGTGGTCCCTACTCA 59.714 52.381 0.00 0.00 0.00 3.41
5018 5289 2.062971 TCCGTATGTGGTCCCTACTC 57.937 55.000 0.00 0.00 0.00 2.59
5019 5290 2.091499 TGATCCGTATGTGGTCCCTACT 60.091 50.000 0.00 0.00 0.00 2.57
5020 5291 2.313317 TGATCCGTATGTGGTCCCTAC 58.687 52.381 0.00 0.00 0.00 3.18
5021 5292 2.696707 GTTGATCCGTATGTGGTCCCTA 59.303 50.000 0.00 0.00 0.00 3.53
5022 5293 1.485066 GTTGATCCGTATGTGGTCCCT 59.515 52.381 0.00 0.00 0.00 4.20
5023 5294 1.805120 CGTTGATCCGTATGTGGTCCC 60.805 57.143 0.00 0.00 0.00 4.46
5024 5295 1.567504 CGTTGATCCGTATGTGGTCC 58.432 55.000 0.00 0.00 0.00 4.46
5025 5296 0.928229 GCGTTGATCCGTATGTGGTC 59.072 55.000 0.00 0.00 0.00 4.02
5026 5297 0.461339 GGCGTTGATCCGTATGTGGT 60.461 55.000 0.00 0.00 0.00 4.16
5027 5298 1.487452 CGGCGTTGATCCGTATGTGG 61.487 60.000 0.00 0.00 41.85 4.17
5028 5299 1.924335 CGGCGTTGATCCGTATGTG 59.076 57.895 0.00 0.00 41.85 3.21
5029 5300 4.412933 CGGCGTTGATCCGTATGT 57.587 55.556 0.00 0.00 41.85 2.29
5035 5306 2.514013 CGTGCTACGGCGTTGATCC 61.514 63.158 24.76 8.04 42.25 3.36
5036 5307 2.995482 CGTGCTACGGCGTTGATC 59.005 61.111 24.76 14.32 42.25 2.92
5045 5316 1.924524 CAGGTTGTATTCCGTGCTACG 59.075 52.381 2.27 2.27 42.11 3.51
5046 5317 1.664151 GCAGGTTGTATTCCGTGCTAC 59.336 52.381 0.00 0.00 0.00 3.58
5047 5318 1.276705 TGCAGGTTGTATTCCGTGCTA 59.723 47.619 0.00 0.00 33.57 3.49
5048 5319 0.036164 TGCAGGTTGTATTCCGTGCT 59.964 50.000 0.00 0.00 33.57 4.40
5049 5320 0.878416 TTGCAGGTTGTATTCCGTGC 59.122 50.000 0.00 0.00 33.27 5.34
5050 5321 3.634568 TTTTGCAGGTTGTATTCCGTG 57.365 42.857 0.00 0.00 0.00 4.94
5086 5357 8.825745 GCAGAAATGATTTGGTTTTTAACAGAA 58.174 29.630 0.00 0.00 0.00 3.02
5087 5358 7.984050 TGCAGAAATGATTTGGTTTTTAACAGA 59.016 29.630 0.00 0.00 0.00 3.41
5088 5359 8.140677 TGCAGAAATGATTTGGTTTTTAACAG 57.859 30.769 0.00 0.00 0.00 3.16
5089 5360 8.140677 CTGCAGAAATGATTTGGTTTTTAACA 57.859 30.769 8.42 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.