>input_sequence_23899
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--------------------------------------------------------------------ATGAGGCAGTCG
AGGTTCAAGAGGATCTGCGTCTTCTGCGGCAGTAGCCAGGGCAAGAAGAGGAGCTACCATGACGCCGCCATTGAGCTCGG
CAACGAGCTGGTAACAATGCTTTACTAGCCACAGTCA-------------CTCTACCTACCTTGGTTATTCTGCCCGCGG
CTTCGTGGACACATCATGCGCATGCGTAGTCACACCATAT----TTTTGAACCGGCCGGGCCGGGTAGTCACTCACACCA
ATA----------TGAACTTGCAATTTACTTTGAGCCATTTGCTGCACAACTTTTGTCAAAATTCGCCCGGTTTCCT---
--------TCCTCCACCGCAATTCCACAAAAGTCATTCCTCCCCTCTGCTCGTCAAACATCGCCGGCCCCACCGCATTCA
CGTCTCCGTTAAATCGAAAATTGAATTATAGCTATACTAGCTCTGTTCTGTCCCCGTACGTCCTCTTGATCGATCGCGTT
CAAGAAGCATGTTTCATAATGTACCGGCCGTTGAGGAGGAGTTTAACCGCGCGGTTTATTTGAATTTATTTACTGGGTGG
TGACTGGCGTTGGCGTTGGCACGTTGTCGTCGCAGGTTGCGAGGGGCGTGGACCTGGTGTACGGCGGGGGAAGCATCGGG
CTCATGGGCATGGTGTCCCAGGCGGTGCACGACGGCGGCAGGCACGTCATAGGGTACGTAACAATCTCAGCTTA-----G
CTCTTCTTCTTTTTCTCATTTTGCTAGCTAGCCC-----GCCTGGTGGATGCATGTGCTGATCACTTGTTTTGTCATCTT
CTTGTCCATGCGCAGTGTCATTCCCAAGACCCTCATGACCCCAGAGGTATGTCCGCTACTCATGCATGTCTACAACT---
---ACTAGGAGGGAATATCCTGTG---TAGATGCATGCTTTTAAATTAATTAATTAATTAA----CTGGAGATTCGCT--
---AAAAAACCCTGAAAGAACGTAGTAGTATCTCGACAATTTTGAAGCTGAAACTTGATTTGCTTTTCGAGATAATCAGA
CAAAATTGGACAGTGCGGAAACCAGCAGCAGCATGTACTACTAGGAACTTCCCACGCGTACCAAACAGACCGACATTCTC
CGCCGTCCATGGCCTGCCGTGGCTCGTCCGAAAGATCTTGGACATGCCATGACAGTTGGGTCCCTG--------ACCTGC
AGCTTGCAAACGCTTGCTTCTGTTGGAGCCAATCATGGCAACGTGCTCACGTTCGGGAGTTGTTTATGTCGCCGCTGTTA
GTGTTAGGGCGTAGAGCCACTAGTAATAATCAAATGGGCTTGGGAGTTTGAAGCACTCCTGCCGGTGCTGCAGTCCCAGG
GGACATGGCACTTGGTTGTGCAAAAGAAAAGAATACCCTCTACT---ACTACTCCTACCTGGAGGAGGAGCAGTTGTGAT
CAAGGGCT------AGTATGCTTTTGGCACAAATCCAGATCTCGGCGTGAGGATAA---ACTACTACTGGCAGTGCAAAA
AGGCGCAGCTGTAC------------AGTAGAGCAATCTCTTGCCACCAAAAGCCTTGCCATGGCAGCATATTGGGTTAT
TGGCATCATCTCCTTTCTAATCTGCCTGCTAGGGGAAAAGAGATATTGCCTTCTTTGGCTGCCCGGCCCTCATGTTTTCT
TCAGAATAATGCGTTTCCA------------------------TGATACGCACTAGGGTTGCCGTATTGT-----GGTCT
ATCCTGTACTACTACTATGTCACATCACTGGTACAGTAGATGGTTACTCACAAACAATTAAATCGTGG----TTCAGAGG
ACTCTCATGTTCATGCATATCCAGAGGCATTTTTCTTTTGTGCTGGCTGTG------------GTCCTCCGCTTCCTGCT
TGTCCTTTCACCCTTGCCCAAGGAGGT-AAAAGGAGAGTTGATATTTGAACCATCCATCTAATGGCATTTTTGGTCCCCT
TCGAGCACAATCATGCCCA-TCTTGGGAATGTGATACTAGTAGTAGTTTTACTTGTCGTACGTATGGATGTATCCAGATG
TATTTTAGTTCTAGATATATTCATTTCAGCGACGAGTAATTTGGAACGGAGGGAGTACGTAATATAGTGTACTATCACCA
AACACAAAGAGACCAAGCA----TCATGGCACGACAGAGCCTCATTTCTCGTGTTCCCTTTGCAGCATAGCATGGCTGAT
CAGGTCAGGAGGTGAGCTGAAAAACAATCTTAATGTTTTCTCTGTCTCTCTCTGTTTCAGATAAGCGGTGAGACGGTGGG
GGAGGTGAGGGCAGTGGCGGACATGCATCAGAGGAAGGCAGAGATGGCAAGGCACTCTGACGCCTTCATAGCCCTGCCTG
GTGAGTCACA----CAAACTCAGCACACACATGTAACCATATTAGCCTGC--------ATCTTTACCTCGCCTGGATCAG
GATCAGG------------TGAATACATAGAACATTCATTGCTCTGCAGAAATCAATGGCAGGTTACAGTCAAGTGGTAG
ATCCGGCTGTAACTTGGCG--TTTTTCACATGTCTATCTAAGAAATGAAAGCTAGCTCCAGATCCCATGCATGAATCTGG
GTCCAGCTAGCA----GGTGTAAATTCCCAATAATTGGTGCAGACGTTCTAGTAGTAGCATCACCCCCACCGAGT-----
-----------------------------------TGCTGAGAGCTGCTCGTGTTGCACGTCGTGTTGTGCGATGTACAA
CGAACCAGTAGCAGATTATTCATGTGAGTTGTGTCAATGCAGGAGGATATGGTACCCTGGAGGAGCTGCTCGAAGTGATT
ACATGGGCGCAGCTCGGCATCCATCACAAGCCGGTACGGGCTGCCACTGTCCTTTTTGTCTATCCTTCCTTCAGATTGAA
ATTGAAAAATGTCTG--AACGAACGCAATGCTCCTTGC-TTGCTTCAGGTTGGGCTGCTGAACGTGGACGGGTACTACAA
CTCGCTGCTGACCTTCATCGACAAGGCCGTGGAGGAAGGGTTCATCAACACCAGCGCGCGCCGCATCATCGTGCTCGCCC
CCACGGCGGAGGAGCTCATGGAGAAGCTCGAGGTACATACATATTTT------CTGACCCTGAACCTGAACCTGAACTCG
CGCGTGTAAAACTCTGCATCTGACCAATGAGACTGCTTGTTTCTGCTCAGGACTACGTGCCTTACCACGACAGGGTGGCG
TCGAAGCTCAACTGGGACATAGCGGCGGAGATAGGGCACCTAGGGTACTGA-----------------------------
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>chr1D_1_TraesCS1D01G154700
ACCATCCACTAGAGATGCTCTAACAATCTCAGCTTAGCTCTTCTTCTTTTTCTCATTTTGCTAGCTAGCCCGCCTGGTGG
ATGCATGTGCTGATCACTTGTTTTGTCATCTTCTTGTCCATGCGCAGTGTCATTCCCAAGACCCTCATGACCCCAGAGGT
ATGTCCGCTACTCATGCATGTCTACAACTACTAGGAGGGAATATCCTGTGTAGATGCATGCTTTTAAATTAATTAATTAA
TTAACTGGAGATTCGCTAAAAAACCCTGAAAGAACGTAGTAGTATCTCGACAATTTTGAAGCTGAAACTTGATTTGCTTT
TCGAGATAATCAGACAAAATTGGACAGTGCGGAAACCAGCAGCAGCATGTACTACTAGGAACTTCCCACGCGTACCAAAC
AGACCGACATTCTCCGCCGTCCATGGCCTGCCGTGGCTCGTCCGAAAGATCTTGGACATGCCATGACAGTTGGGTCCCTG
ACCTGCAGCTTGCAAACGCTTGCTTCTGTTGGAGCCAATCATGGCAACGTGCTCACGTTCGGGAGTTGTTTATGTCGCCG
CTGTTAGTGTTAGGGCGTAGAGCCACTAGTAATAATCAAATGGGCTTGGGAGTTTGAAGCACTCCTGCCGGTGCTGCAGT
CCCAGGGCACATTTCACGGAAAAGCCCTTGCCATCGTCG------CTACGCTGGGTGGATCCGTGGATGGATGGA----G
TGTTTTTCCTCCATGTGCGCGCATTTATTTTGCTTCCCTT-CCGTAGCATCCGTCCCTTTCAGCTCCCCATT--CTATCT
TCTCTCTCCCCTCCCCACTATTATATAGCCATGGGTGGCGCA----CTCCCTCCCTCCAACGACAA----GGCCTTCCTT
CCTTCCTTGTGTTTGTGCTAGCAGAGCACGCACCTCACACCACCACGACAATCA-----CAAGCGCGACTCCTGCG--TG
CTTGCTTGCTAGAGTCAAGCACCACCTACCCAGGCAGCTATCTAGCTAGTGAGAGGAGATAGAAAGCCATGAGGCAGTCG
AGGTTCAAGAGGATCTGCGTCTTCTGCGGCAGTAGCCAGGGCAAGAAGAGGAGCTACCATGACGCCGCCATTGAGCTCGG
CAACGAGCTGGTAACAATGCTTTACTAGCCACAGTCA-------------CTCTACCTACCTTGGTTATTCTGCCCGCGG
CTTCGTGGACACATCATGCGCATGCGTAGTCACACCATAT----TTTTGAACCGGCCGGGCCGGGTAGTCACTCACACCA
ATA----------TGAACTTGCAATTTACTTTGAGCCATTTGCTGCACAACTTTTGTCAAAATTCGCCCGGTTTCCT---
--------TCCTCCACCGCAATTCCACAAAAGTCATTCCTCCCCTCTGCTCGTCAAACATCGCCGGCCCCACCGCATTCA
CGTCTCCGTTAAATCGAAAATTGAATTATAGCTATACTAGCTCTGTTCTGTCCCCGTACGTCCTCTTGATCGATCGCGTT
CAAGAAGCATGTTTCATAATGTACCGGCCGTTGAGGAGGAGTTTAACCGCGCGGTTTATTTGAATTTATTTACTGGGTGG
TGACTGGCGTTGGCGTTGGCACGTTGTCGTCGCAGGTTGCGAGGGGCGTGGACCTGGTGTACGGCGGGGGAAGCATCGGG
CTCATGGGCATGGTGTCCCAGGCGGTGCACGACGGCGGCAGGCACGTCATAGGGTACGTAACAATCTCAGCTTA-----G
CTCTTCTTCTTTTTCTCATTTTGCTAGCTAGCCC-----GCCTGGTGGATGCATGTGCTGATCACTTGTTTTGTCATCTT
CTTGTCCATGCGCAGTGTCATTCCCAAGACCCTCATGACCCCAGAGGTATGTCCGCTACTCATGCATGTCTACAACT---
---ACTAGGAGGGAATATCCTGTG---TAGATGCATGCTTTTAAATTAATTAATTAATTAA----CTGGAGATTCGCT--
---AAAAAACCCTGAAAGAACGTAGTAGTATCTCGACAATTTTGAAGCTGAAACTTGATTTGCTTTTCGAGATAATCAGA
CAAAATTGGACAGTGCGGAAACCAGCAGCAGCATGTACTACTAGGAACTTCCCACGCGTACCAAACAGACCGACATTCTC
CGCCGTCCATGGCCTGCCGTGGCTCGTCCGAAAGATCTTGGACATGCCATGACAGTTGGGTCCCTG--------ACCTGC
AGCTTGCAAACGCTTGCTTCTGTTGGAGCCAATCATGGCAACGTGCTCACGTTCGGGAGTTGTTTATGTCGCCGCTGTTA
GTGTTAGGGCGTAGAGCCACTAGTAATAATCAAATGGGCTTGGGAGTTTGAAGCACTCCTGCCGGTGCTGCAGTCCCAGG
GGACATGGCACTTGGTTGTGCAAAAGAAAAGAATACCCTCTACT---ACTACTCCTACCTGGAGGAGGAGCAGTTGTGAT
CAAGGGCT------AGTATGCTTTTGGCACAAATCCAGATCTCGGCGTGAGGATAA---ACTACTACTGGCAGTGCAAAA
AGGCGCAGCTGTAC------------AGTAGAGCAATCTCTTGCCACCAAAAGCCTTGCCATGGCAGCATATTGGGTTAT
TGGCATCATCTCCTTTCTAATCTGCCTGCTAGGGGAAAAGAGATATTGCCTTCTTTGGCTGCCCGGCCCTCATGTTTTCT
TCAGAATAATGCGTTTCCA------------------------TGATACGCACTAGGGTTGCCGTATTGT-----GGTCT
ATCCTGTACTACTACTATGTCACATCACTGGTACAGTAGATGGTTACTCACAAACAATTAAATCGTGG----TTCAGAGG
ACTCTCATGTTCATGCATATCCAGAGGCATTTTTCTTTTGTGCTGGCTGTG------------GTCCTCCGCTTCCTGCT
TGTCCTTTCACCCTTGCCCAAGGAGGT-AAAAGGAGAGTTGATATTTGAACCATCCATCTAATGGCATTTTTGGTCCCCT
TCGAGCACAATCATGCCCA-TCTTGGGAATGTGATACTAGTAGTAGTTTTACTTGTCGTACGTATGGATGTATCCAGATG
TATTTTAGTTCTAGATATATTCATTTCAGCGACGAGTAATTTGGAACGGAGGGAGTACGTAATATAGTGTACTATCACCA
AACACAAAGAGACCAAGCA----TCATGGCACGACAGAGCCTCATTTCTCGTGTTCCCTTTGCAGCATAGCATGGCTGAT
CAGGTCAGGAGGTGAGCTGAAAAACAATCTTAATGTTTTCTCTGTCTCTCTCTGTTTCAGATAAGCGGTGAGACGGTGGG
GGAGGTGAGGGCAGTGGCGGACATGCATCAGAGGAAGGCAGAGATGGCAAGGCACTCTGACGCCTTCATAGCCCTGCCTG
GTGAGTCACA----CAAACTCAGCACACACATGTAACCATATTAGCCTGC--------ATCTTTACCTCGCCTGGATCAG
GATCAGG------------TGAATACATAGAACATTCATTGCTCTGCAGAAATCAATGGCAGGTTACAGTCAAGTGGTAG
ATCCGGCTGTAACTTGGCG--TTTTTCACATGTCTATCTAAGAAATGAAAGCTAGCTCCAGATCCCATGCATGAATCTGG
GTCCAGCTAGCA----GGTGTAAATTCCCAATAATTGGTGCAGACGTTCTAGTAGTAGCATCACCCCCACCGAGT-----
-----------------------------------TGCTGAGAGCTGCTCGTGTTGCACGTCGTGTTGTGCGATGTACAA
CGAACCAGTAGCAGATTATTCATGTGAGTTGTGTCAATGCAGGAGGATATGGTACCCTGGAGGAGCTGCTCGAAGTGATT
ACATGGGCGCAGCTCGGCATCCATCACAAGCCGGTACGGGCTGCCACTGTCCTTTTTGTCTATCCTTCCTTCAGATTGAA
ATTGAAAAATGTCTG--AACGAACGCAATGCTCCTTGC-TTGCTTCAGGTTGGGCTGCTGAACGTGGACGGGTACTACAA
CTCGCTGCTGACCTTCATCGACAAGGCCGTGGAGGAAGGGTTCATCAACACCAGCGCGCGCCGCATCATCGTGCTCGCCC
CCACGGCGGAGGAGCTCATGGAGAAGCTCGAGGTACATACATATTTT------CTGACCCTGAACCTGAACCTGAACTCG
CGCGTGTAAAACTCTGCATCTGACCAATGAGACTGCTTGTTTCTGCTCAGGACTACGTGCCTTACCACGACAGGGTGGCG
TCGAAGCTCAACTGGGACATAGCGGCGGAGATAGGGCACCTAGGGTACTGACCAGGACGTTGTGGCTGCAG-CCAAGGGC
GACGCCGGCCAGCCGGTTGCCATGCATGCATG----TGTTTAACTCTGATGATGATGATGATGCGGATTTGGAGTTCATG
ATTGATGAAGGGGTTTCCGTTGTTTGATTGTTGTTGTAGTAGCAACTAGCAAATTATGCGAGCGTGCGTGCGTTTTGTAT
ATGTTGTGCTTCCATCGGGGACAGCTCAAGGATATTGTAAAACCTGACCGGTTTCAAGGTCCCTATTAGAGCATCGGCG-
-----TCCATCTCTGCCTGCTTAATTAGTACTACTGCTGCTGCTG---GTATCAGTCAATATAATGTTAGTTTTTCAAGG
TTGTGAGTCCATTGACAACAACATGTACTATAGCAGTGTGCACAACTTTGGTCAGACAGACTGAGCATTGAATCGAGAGG
TGTGGGTGTTTCTCTAAACCCATTACCCCTACGCTATGGTTCGTTTTGTGTCTTTCATGTTTGTATTTGGTTTTCACTTG
GTTTTTTCTTATATTATCGAGAGATGCATGACTTTGGGGTCCGGTTTTCTCTTGTTTCCATTGCATGTCGGTTTATGATA
TATATATATATATATATATATATATATTATTATTTTTTTGAAAAGGGGATTCCCCGGCCTCTGCATCAGGTGGATGCATA
CGGCCACTTAGATAAATAAAATAGGTTCAACAATGTCGAAAAGTCGTAAAAGAAACTACGTCGAGCTCACAAAGACCTCG
TCACAAAAAAGGCCATATAGCCACAACCGGCTGGCAGAAAAATAGGTATGGAAACTAATTGCCTATCCTATTACATGACC
GCCATCCAAACCGGTTGAATATATCCCGCGCTACCATCTCCCACCGGGCAGATCCAGTAACCAAACGCTCCCCGGCCTCC
GTCGGAGTGAGTAGGGACCACATACGGATCAACGCCGTAGCACGGAATACAACCTGCAAAAAATGAATAGTAGTTATTCT
GTTAAAAACCAAATCATTTCTGCAG
>chr1D_21
--------------------TAACAATCTCAGCTTAGCTCTTCTTCTTTTTCTCATTTTGCTAGCTAGCCCGCCTGGTGG
ATGCATGTGCTGATCACTTGTTTTGTCATCTTCTTGTCCATGCGCAGTGTCATTCCCAAGACCCTCATGACCCCAGAGGT
ATGTCCGCTACTCATGCATGTCTACAACTACTAGGAGGGAATATCCTGTGTAGATGCATGCTTTTAAATTAATTAATTAA
TTAACTGGAGATTCGCTAAAAAACCCTGAAAGAACGTAGTAGTATCTCGACAATTTTGAAGCTGAAACTTGATTTGCTTT
TCGAGATAATCAGACAAAATTGGACAGTGCGGAAACCAGCAGCAGCATGTACTACTAGGAACTTCCCACGCGTACCAAAC
AGACCGACATTCTCCGCCGTCCATGGCCTGCCGTGGCTCGTCCGAAAGATCTTGGACATGCCATGACAGTTGGGTCCCTG
ACCTGCAGCTTGCAAACGCTTGCTTCTGTTGGAGCCAATCATGGCAACGTGCTCACGTTCGGGAGTTGTTTATGTCGCCG
CTGTTAGTGTTAGGGCGTAGAGCCACTAGTAATAATCAAATGGGCTTGGGAGTTTGAAGCACTCCTGCCGGTGCTGCAGT
CCCAGGGCACATTTCACGGAAAAGCCCTTGCCATCGTCG------CTACGCTGGGTGGATCCGTGGATGGATGGA----G
TGTTTTTCCTCCATGTGCGCGCATTTATTTTGCTTCCCTT-CCGTAGCATCCGTCCCTTTCAGCTCCCCATT--CTATCT
TCTCTCTCCCCTCCCCACTATTATATAGCCATGGGTGGCGCA----CTCCCTCCCTCCAACGACAA----GGCCTTCCTT
CCTTCCTTGTGTTTGTGCTAGCAGAGCACGCACCTCACACCACCACGACAATCA-----CAAGCGCGACTCCTGCG--TG
CTTGCTTGCTAGAGTCAAGCACCACCTACCCAGGCAGCTATCTAGCTAGTGAGAGGAGATAGAAAGCCATGAGGCAGTCG
AGGTTCAAGAGGATCTGCGTCTTCTGCGGCAGTAGCCAGGGCAAGAAGAGGAGCTACCATGACGCCGCCATTGAGCTCGG
CAACGAGCTGGTAACAATGCTTTACTAGCCACAGTCA-------------CTCTACCTACCTTGGTTATTCTGCCCGCGG
CTTCGTGGACACATCATGCGCATGCGTAGTCACACCATAT----TTTTGAACCGGCCGGGCCGGGTAGTCACTCACACCA
ATA----------TGAACTTGCAATTTACTTTGAGCCATTTGCTGCACAACTTTTGTCAAAATTCGCCCGGTTTCCT---
--------TCCTCCACCGCAATTCCACAAAAGTCATTCCTCCCCTCTGCTCGTCAAACATCGCCGGCCCCACCGCATTCA
CGTCTCCGTTAAATCGAAAATTGAATTATAGCTATACTAGCTCTGTTCTGTCCCCGTACGTCCTCTTGATCGATCGCGTT
CAAGAAGCATGTTTCATAATGTACCGGCCGTTGAGGAGGAGTTTAACCGCGCGGTTTATTTGAATTTATTTACTGGGTGG
TGACTGGCGTTGGCGTTGGCACGTTGTCGTCGCAGGTTGCGAGGGGCGTGGACCTGGTGTACGGCGGGGGAAGCATCGGG
CTCATGGGCATGGTGTCCCAGGCGGTGCACGACGGCGGCAGGCACGTCATAGGGTACGTAACAATCTCAGCTTA-----G
CTCTTCTTCTTTTTCTCATTTTGCTAGCTAGCCC-----GCCTGGTGGATGCATGTGCTGATCACTTGTTTTGTCATCTT
CTTGTCCATGCGCAGTGTCATTCCCAAGACCCTCATGACCCCAGAGGTATGTCCGCTACTCATGCATGTCTACAACT---
---ACTAGGAGGGAATATCCTGTG---TAGATGCATGCTTTTAAATTAATTAATTAATTAA----CTGGAGATTCGCT--
---AAAAAACCCTGAAAGAACGTAGTAGTATCTCGACAATTTTGAAGCTGAAACTTGATTTGCTTTTCGAGATAATCAGA
CAAAATTGGACAGTGCGGAAACCAGCAGCAGCATGTACTACTAGGAACTTCCCACGCGTACCAAACAGACCGACATTCTC
CGCCGTCCATGGCCTGCCGTGGCTCGTCCGAAAGATCTTGGACATGCCATGACAGTTGGGTCCCTG--------ACCTGC
AGCTTGCAAACGCTTGCTTCTGTTGGAGCCAATCATGGCAACGTGCTCACGTTCGGGAGTTGTTTATGTCGCCGCTGTTA
GTGTTAGGGCGTAGAGCCACTAGTAATAATCAAATGGGCTTGGGAGTTTGAAGCACTCCTGCCGGTGCTGCAGTCCCAGG
GGACAT--------------------------------------------------------------------------
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>chr1B_21
CATTT---------------------------------------------------------------------------
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--------------CACGGAAAAGCCCTCGCCATCGTCGCTACGCCTACGCTGGGTGGATCCGTGGATGGATGGATGGAG
TGTTTTTCCTCCATGTGCGCGCATTTATTTTGCTTCCCTT-CCGTAGCATCCGTCCTTTTCAGCTCCCCATT--CTATCT
TCTCTCTCCCCTCCCCACTATTATATAGCCATGGGTGGCGCACTGCCTCCCTCCCTCCATTGACAAGGCCGGCCTTCCTT
CCTTCCTTGTGTTTGTGCTAGCAGCGCACGCACCCCACACCACCACCACAATCACCCTCCAAGCGCGACTCCTGCTTTTG
CTTGCTTGCTAGAGTCAAGCACCACCTACCCAGGCAGCAGGCTAGCTAGTGAGAGGAGATAGAGAGCGATGAGGCAGTCG
AGGTTCAAGAGGATCTGCGTCTTCTGCGGCAGTAGCCAGGGCAAGAAGAGGAGCTACCATGACGCCGCCATTGAGCTCGG
CAACGAGCTGGTAACCATGCTTTACTAGCCACAGTCATCACTCTCCGTACCTCTACCTACCTTGGTTATTCTGTCTACGG
CTTCGTGGCGACATCATGCGCGTGCGTAGTCACACCATAC----TTCTGAACCGGCCGGGCCGGGTAGTCACTCACACCA
ATACTAGTACGTATGAATTTGCAATTTACTTTGAGCCACTTGCTGCACAACTTTTGTCAAAATTCGCCCGGTTTCCT---
--------TCCTCCACCGCAATTCCACAAAAGCCATTCCTCCCCTGTGCTCGTCAAACATCGCCGGCCCCACCGCATTCA
CGGCTCCATTAAATCGAAATTAAATTATACTCCCTCCGTCCC----------------CGTCCTCTTGATCGATCGCGCT
CAAGAAGCATGTTTCATC-TGTACCGGCCGTTGAGGAGGAGTTTAACCGCGCGGTTTATTTGAATTTATTTACTGGGTGG
TGATTGGCGTTGGC------ACGTTGTTGTCGCAGGTGGCGAGGGGCGTGGACCTGGTGTACGGCGGGGGAAGCATCGGG
CTCATGGGCATGGTGTCCCAGGCGGTGCACGACGGCGGCAGGCACGTCATAGGGTACGTAACAATA-----TCAGCTTGG
CACTTCTCCTTTTTCTCGTTTTGCTAGCTAGCCC-----GCCTGGCCGATGCATGTGCTGATCACTTGTTTTGTCATCTT
CTTGTCCATGCGCAGTGTCATTCCCAAGACCCTCATGACCCCAGAGGTATGTCCGCTACTCATGCATGTCTACAACTACA
ACTACTAGGAGGGAATATCCTGTG---TAGATGCATGCTTTTAAATAAATTAATG--------AACTGGAGATTCTCAAC
AAAAGAAAACCCTGAAAGAGCGTAGTAGTATCTCGCCGATTTTGAAGCTGAAACTCGATTTGCTTTTCGAGATAATCGGA
CAAAATTTGCCAG---------------CAACAACATGTACTAGGAACTTCCCACGCGTACAAAACAGACCGACATTCTC
CGCCGTCCATGGCCTGGCGTGGCTCGTCCGAAAGATCTTGGACATGCCATGACAGTTGGGTCCCCGTTCGT---ACCTGC
AGCTTGCAAACGCTTGCTTCTGTTGGACCCAATCATGGCAACGTGCTCACGTTCGGGAGTTGTTTATGTCGTGGCTGTTA
GTGTTAGGGCGTAGAGTCAC---TAATAATCAAATGGGCTTGGGAGTTTGAAGCACTCCTGCCGGTGCTGCAGTCCCAGG
GGACATGGCACTTGGGTGTGCAAAAGAAAAGAATACCCTCTACT---ACT---CCTACCTGGAGGAGGAGTAGTTGTGAT
CAAGAGGTACTAGCAGTATGCTTTTGGCACAAATCCAGATCTCGGCGTGAGGATAAACTACTACTACTAGCAGTGCAAAA
AG-CGCAGCTGTACACTAGTAGTAGTAGTAGAGCAATCTCTTGCCACCAAAAGCCTTGCCATGGCAGCATATTGGGTTAT
TGGCACCATCTCCTTTCTAATCTGCCTGCTAGGGGAAAAGAGATGTTGCCTTCTTTGGCTGCCCGGCCCTCATGTTTTCT
TCAGAATAATGTGTTTCCA------------------------TGATACGCACTAGGGTTGCCGTATTGT-----GGTTT
ATCCTCTACTACTACTATGTCACATCACTGG--------------------AAACAATTAAATCGTGG----TTCAGAGG
GCTCTCACGTTCATGCATATCCAGAGGCATTCTTCTTTTGTGCTGGCTGTG------------GTCCTCCGCTTCCTGCT
TGTCCTTTCACCCTTGCCCAAGGAGGT-AAAAGGAGAGTTGATATTTGAA----CCATCTAATGGCATTTTTGGTCCCCT
TCGAGCACAATCATGCCCA-TCTTGGGAATGTGCTACTAGTAGTGTTTGTCTCCGCAAAAT-------------------
---------------------------------------------ACCGAGTACGTACGTACTAGAGTGTA---TCACCA
AACACAAAGAGACCAAGCA----TCATGGCACGACAGAGCCTCATTTCTCGCGTTCCCTTTGCAGCATAGCATGGCTGCT
GAGGTCATGAGGTGAGCTGCAAAACAACCTTAATGTTTTCTCTG----TCTCTGTTTCAGATAAGCGGTGAGACGGTGGG
GGAGGTGAGGGCAGTGGCGGACATGCATCAGAGGAAGGCAGAGATGGCAAGGCACTCTGACGCCTTCATAGCCCTGCCTG
GTGAGTCACACACACAAACTCAGCACACACATGTAACGATATTA---------------------CCTCGCCTGGATCAG
GATCAGGATCAGGATCAGTTGAATATATAGAACATTCATTGCTGTACAGAAATCAATGGCAGGTTACAGTCAAGTGGTAG
GTCAGGCTGTAACTTGGG-CATTCTTCACATGTCTATCCAAACAATGAAAGCTAGCTCCAGATCCCATGCATGAATCTGG
GTCCAGCTAGCA----GGTGTAAATTCCCAATAATTGGTGCAGACGTTCTAGTAGTAGCATCACCCCCACCGAGT-----
-----------------------------------TGC-------------------ACGTCGTGTTGTGCGATGTACAA
CGAACCAGTAGCAGATTATTCATGTGGATTGTGTCAATGCAGGAGGATATGGTACACTGGAGGAGCTGCTCGAAGTGATT
ACATGGGCGCAGCTTGGCATCCATCACAAGCCGGTACGGGCTGCCACTGTCCTTT-TGTCGATCCTTCCTTGAGGTTGAA
ATTGAAAATTGTCTGAAAACGAACGCCATGTTCCTTGC-TTGCTTCAGGTTGGGCTGCTGAACGTGGACGGGTACTACAA
CTCGCTGCTGACTTTCATCGACAAGGCCGTGGAGGAAGGGTTTATCAACACCAGCGCGCGCCGCATCATCGTGCTCGCCC
CCACGGCGGAGGAGCTCATGGAGAAGCTCGAGGTACCTACATA--TT------CTGACCCTGAACCTGAACCTGAACTCG
CGCGTATAAAATTCTGCGTCTCACCGATGAGACTGTTTGTTTCTGTTCAGGACTACGTGCCTTACCACGACAGGGTGGCG
TCGAAGCTCAACTGGGATATAGCGGCGGAGATAGGGCACCTAGGGTACTGACCAAGACGTTGTGGCTGCAG-CCAAGGGC
GAGGCCGGCCAGCCGGTTGC----CATGCATG----TGTTTAACTCTGATGATGATGATG---CGGATTTGGAGTGCAAG
ATTGATGAAGGGGTTTCCGTTGTTTGATTGTTGTTGTAGTAG----TAGCAAATTATGCGAGCGTGCGTGCGTTTTGTAT
ATGTTGTGCTTCCATCGGGGATAGCTCAAGGATATTGTAAAACCTGACCGGTTTCAACCTCCCTATTAGAGCATCGCCG-
-----TCCATCTCTACCTGCTTAATTAGTACTACTACAGCTGCTG---GTATCAGTCAATATATTGTTAGTTTTTCAAGG
TTGTGAATCCATTGACAACAACATGTACTATAGCAGTGTGCACAACTTTGGTCAGTCAGACTGAGAATTGAATCCAGAGG
TGTTTGTGTTTCTCTAAA-CCATTACCCCTACGCTATGGTTTGTTTTGTGTCTTTCATATCAGCATCTGGTTTTCACTTG
G-TTTTTCTTATATTATCGAGAGATGCATGACTTTGGGGTCCTGTTTTCTCTTGTTTCCATTGCATGTCGTTGTCTGATA
TAT-----------------------------------------------------------------------------
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>chr1A_28
CATTT---------------------------------------------------------------------------
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--------------CACGGAAAAGCCCTCGCCATCTTG-----------GCTGGGTGGATCCGTGGATGGATGGA-GGAG
TGTTTTTCCTCCATGTGCGCGCATTTATTTTGCTTCCCTTCCCTTTGCTTCCGTCCCTTTCAGTTCCCATTCTACTATCG
TCTCTCTCCCCTCCCCACTATTATATAGCCATGGGTGGCGCACTGCCTCCCTCCCTCCATCCACAAGGCCTTCCTTCCTT
CCTTCCTTGTGTTTGTGCTAGCAGCGCACGCACCCCACACCACCACGACAATCACCCTCCAAGCGCGACTCCTGCG--TG
CTTGCTTGCTAGAGTCGAGCACCACCTACCCAGGCAGCTA----GCCAGAGCGAGGAGATAGAGAGCGATGAGGCAGTCG
AGGTTCAAGAGGATCTGCGTCTTCTGCGGCAGTAGCCAGGGCAAGAAGAGGAGCTACCATGACGCCGCCATTGAGCTCGG
CAACGAGCTGGTAACCATGCTTTACTAGCCACACTCA-------------CCACTCTCCCTACCTCT-------------
---------------ATGCGCGTGCGTAGTCACACCATATATATTTCTGAACCGGCCGGGCCGGCTAGTCACTTACACCA
-TA----------TGAATTTGCAATTTAC---------TTTGCTGCCCAACTTTTGTCAAAATTTGCCCCGCTTGCGGCT
TGCCTTCCTCCTCCACAACAATTCCACAAAAGTCATTCCTCCCCTGTGCTCGTCAAACATCGCCGGCCCTACCGCATTCA
CGGCTCCATTAAATCGAA-ATTGAATTATAGCCATGCTAGCTCTGTTCTGCCCCCCAC---CCTCTTGATCGATCGCGTT
CAAGAAGCATGTTTCATC-TGTACCGGCCGTTGAGGAGGAGTTTAACCGTGCAGTTTTCCTATTTGAATTTACTGGGTGG
TGACT-----------TGGCACGTTGCTGTGGCAGGTGGCGAGGGGCGTGGACCTGGTGTACGGCGGGGGGAGCATCGGG
CTCATGGGCATGGTGTCCCAGGCGGTGCACGACGGCGGCAGGCACGTCATAGGGTATGTAACAATCTCAGCTCAGCTTGG
CTCTTCTTCTTTTTCTCATTTTGCTAGCTAGCTGGGCTGGCCTGGTGGATGCATGTGCTGATCGCTTGTTTTGTCATCTT
GTTGTCCACGCGCAGTGTCATTCCCAAGACCCTCATGACCCCAGAGGTATGTCCGCTACTCGTGCATGTCTACAACTAC-
-----TAGGAGCGAATATCCTGTGTACTAGATGCATGCTTTTAAATTAATTAATTAATTAATTAACTGGAGATTC-----
--AAAAAAAACCTGAAAGAACGTAGTG---TCTCGCTAATTTTGAAGCTGAAACTCGATTTGCTTTTCTAGATGATCAGA
CAAAATTGGCCAG---------------CAACATGTAGTACTAGCAACTTCCCACGCGTACCAAACAGACCGACATTCTC
CGCCGTCCATGGCCTGCCGTGGCTCGTCCGAAAGATCTTGGG-----CATGCCAGTTGGGTCCCTGCTCGTACTACCTGC
AGCTTGCAAACGCTTGCTTCTGTTGGAGCCAATCATGGCAACGTGCTAACGTTCGGGACTTGTTTATGTCGTCGCTGTTA
GTGTTAGGGCGTAGAGTCAC---TAATAATCAAATGGGCTTGGGAGTTTGAAGCACTCCTGCCGGTGCTGCAGTCCCAGG
GGACATGGCACTTGGGTGTGCAAAAGAAAAGAATACCCTCTACTACCACT---CCTACCTGGAGGAGGAGCAGCTGTGAT
CAAGAGGTA---GCAGTATGCTTTTGGCACAAATCCAGATCTCGGCGTGAGGATAA------ACTACTAGTGGCGCAAAA
AG-CGCAGCTGTACAC------TAGTAGTAGAGCAATCTCTTGCCACCAAAAGCCTTGCCATGGCAGCATATTGGGTTAT
TAGCATCATCTCCTTTCTAATCTGCCTGCTAGGGGAAAAGAGATATTGCCTTCTTTGGCTGCCCGGCCCTCATGTTTTCT
TCAGAATAATGCGTTTCCAAAAGATAAATGAAATGCTCGTCCATGATACGCACTAGGGTTACCGTATCGTATTGTGGTTT
ATCCTA---TACTACTATGTCACATCACTGGTAGATGGTGTG----CTCAGAAACAATTAAATCGTACGTGCTTCAGAGG
ACTCTCATGTTCATGCATATCCAGAGTCGTTTTTCTTTTATGTTGGCTGTGGCTTTTTGCGTGGTCCTCAGCCTCCTGCT
AGTCCTTTCAACCTTGCCCAAGGGGGTAAAAAAGAGAGAGGATATTTGAA----GCAGCTAATGACATTTTCGGCCCCCT
TTGAGCACAATCATGCCCCGTCTTGGGAATGTGCTAGT------GTTTGTCTCCGCAGATCAAATACTATG---------
--------------------------------------------------------------------------TCGCCA
AACACGAAGAGACCAAGCATGCATCATGGCATGGCAGAGACTTATTTCCTTTGCAG------------------------
------------------------CAATGTTGATGTTTTCTCTGTG----TCTGTTTCAGATAAGCGGTGAGACGGTGGG
GGAGGTGAGGGCAGTGGCGGACATGCATCAGAGGAAGGCAGAGATGGCAAGGCACTCTGACGCCTTCATAGCCCTGCCTG
GTGAGTCACACC----AACTCAGCACACACATGTAACCATATTAGCCTGCCTGCCTGCATCTTTACCTCGTCTGGATCTG
GATCAGG------------TGAATATATAGAACATTCATTGCTCTGCAGAAATCAATGGCAGGTTACAGTCAAGTGGTAG
ATCAGGCTGTAACTTGGGGCATTTTTCACATGTCTATCCAAAAAATGAAAGCTAGCTCCAGATCCCATGCATGAATCTGG
GTCCAGCTAGCTAGCTGGTGTAAATTCCCAATAATTGGGGCAAACGTTTTAGCAGTAGCATCGCCCCCACCGGGTACATG
CATGGAGGTGTCGAGCCGCTGAGAGCCGCTCGTGTTGC-------------------ACGTCCTGCTGTGCGATGTACAA
CGAACCAGTAGCAGATTATTCACGTGACTTGTGTCAATGCAGGAGGATATGGTACGCTGGAGGAGCTACTCGAAGTGATT
ACATGGGCGCAGCTCGGCATCCATCACAAGCCGGTACGGGCTGCCACTGTCCTTTCTGTCGATCCTTCCTTGAGGTTGAA
ACTGAGAAATGCCTG--AACGAACGCGATGTTGCTTGCTTTGCTTCAGGTTGGGCTGCTGAACGTGGACGGGTACTACAA
CTCGCTGCTGACCTTCATCGACAAGGCCGTGGAGGAAGGGTTCATCAACACCAGCGCGCGCCGCATCATCGTGCTCGCCC
CCACGGCCGAGGAGCTCATGGAGAAGCTCGAGGTACATACATATTTTCTGACCCTGAACCTGAACCTGAACCTGAACTCG
CGCGTGTAAAATTATGCATCTGA-CGATGAGACTGCTTGTTTCTGCTCAGAACTACGTGCCTTACCACGACAGGGTGGCG
TCGAAGCTCAACTGGGACATAGCGGCGGAGATAGGGCACCTAGGGTACTGACCAGGACGTTGTGGGTGCAGACCAAGGGC
GAGGCCGGCCAGCCGGTTGC----CATGCATGCATGTGTTTAACTCTGATGATGATGATG---CGGATTTGCAGTGCAGG
ATTGATGAAGGGGTTTCCGTTGTTTGATTGTTGTAGTAGTAG----TAGCAAATTATGTGAGCGTGCGTGCGTTTTGTAT
ATGTTGTGCTTCCATCGGGGACAGCTCAAGGATATTGTAAAACCTGACCGGTTTCAAGCTCCCTATTAGAGCATCGCCGT
CCATGTCCATCTCTACCTGCTTAATTAGTACTACTACTGCTGCTGCTGGTATCAGTCAATATAATGTTAGTTTTTCAAGG
TTGTGCGTCCATTGACAACAAAATGTACTATAGCAGTGTGCACAACTTTGGTCAGCCAAACTGAGCATTGAATCAAGAGG
TGTGTGTGTTTCTCTGAA-CTATTACCCCTACGCTATGGTTTGTTTTGTGTCTTTCATGTTTGTATTTGGCTTTCACTTG
C-TTTTTCTTATATTATCAAGAGATGCATGACTTCGGGGTCTGGTTTTCTCTTGTTTTTGTTGCATGTCGGTGTCTGATA
--------------------------------------------------------------------------------
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-------------------------
>chr1D_650
--------------------------------------------------------------------------------
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---------CATTTCACGGAAAAGCCCTTGCCATCGTCG------CTACGCTGGGTGGATCCGTGGATGGATGGA----G
TGTTTTTCCTCCATGTGCGCGCATTTATTTTGCTTCCCTT-CCGTAGCATCCGTCCCTTTCAGCTCCCCATT--CTATCT
TCTCTCTCCCCTCCCCACTATTATATAGCCATGCGTGGCGCA----CTCCCTCCCTCCAACGACAAGGCCTTCCTTCCTT
CCTT----GTGTTTGTGCTAGCAGAGCACGCACCTCACACCACCACGACAATCA-----CAAGCGCGACTCCTGCG--TG
CTTGCTTGCTAGAGTCAAGCACCACCTACCCAGGCAGCTATCTAGCTAGTGAGAGGAGATAGAAAGCCATGAGGCAGTTG
AGGTTCAAGAGGATCTGCGTCTTCTGCGGCAGTAGCCAAGGCAAGAAGAGGAGCTACCATGACGCCGCCATTGAGCTCGG
CAACGAGCTGGTAACAATGCTTTACTAGCCACAGTCA-------------CTCTACCTACCTTGGTTATTCTGTCCGCGG
CTTCGTGGACACATCATGCGCGTGCGTAGTCACACCATAT----TTCTGAACCGGCCGGGCCGGGTAGTCACTCACACCA
ATA----------TGAGCTTGCAATTTACTTTGAGCCATTTGCTGCACAACTTTTGTCAAAATTCGCCCGGTTTCCT---
--------TCCTCCACCGCAATTCCACAAAAGTCATTCCTCCCCTGTGCTCGTCAAACATCGCCGGCCCCACCGCATTCA
CGTCTCCGTTAAATCGAAAATTGAATTATAGCTATACTAGCTCTGTTCTGTCCCCGTACGTCCTCTTGATCAATCGCGTT
CAAGAAGCATGTTTCATAATGTACCGGCCGTTGAGGAGGAGTTTAACCGCGCGGTTTATTTGAATTTATTTACTGGGTGG
TGACTGGCGTTGGCGTTGGCACGTTGTTGTCACAGGTTGCGAGGGGCGTGGACCTGGTGTACGGCGGGGGAAGCATCGGG
CTCATGGGCATGGTGTCCCAGGCGGTGCACGACGGCGGCAGGCACGTCATAGGGTACGTAA-------------------
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-------------------------
>SNPs
SSSS-SSSSSSSSSSSSSSS------------------------------------------------------------
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---------------S----------------------------------SSS---------------------------
----S-S-------------------------------------------------------------S-----------
--S-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
-----S---------------------------S-SSSSS--SSSS----S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------SSSS--------------------------
---------------------------------S----------SS--S-SSSS-SS-S--SS--SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---SSS-------S--S------SSS------
------------------------------------------------------------------------------S-
S------S-----------S-------------------------SSS--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S------------------------------------------------------
---S-------------S--------------------S--S--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------SSSSSSSSSSSSSSSSSSS-----------------------
---------------------------S---------------------------S------------------------
-------------------------------------------------------S----S----------S--S-----
--------------------------S---S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S-------------S------------------------------------------------------
--------------------------------------------------------------------------------
--S-----------------SSSS------------------------------------SSS------------S--S-
------------------------------------------SSSS----------------------------------
----------------------------------------------------------S-----------------S---
--------------S--------------------S--------------------------------------------
-------------------------------------------------------S------------------S-----
----S-------------S----------------------S--------------------------------------
-S----------------------------------------------------------------------S-S-----
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2416
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------AGG
GGACATGGCACTTGGT----------------------------------------------------------------
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-------------------------
>reverse_3604
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---CGGCTGTAACTTGGCGTTTT---------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>forward_2799
--------------------------------------------------------------------------------
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-----------------------------------------------------------AGGGTTGCCGTATTGTGGTC-
--------------------------------------------------------------------------------
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-------------------------
>reverse_4676
--------------------------------------------------------------------------------
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-----------------------------------GCTGCTGCTGGTATCAGTCA-------------------------
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-------------------------
