Multiple sequence alignment - TraesCS1D01G147600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G147600 chr1D 100.000 3524 0 0 1 3524 203744716 203748239 0.000000e+00 6508
1 TraesCS1D01G147600 chr1A 93.997 3015 92 40 561 3522 258737975 258740953 0.000000e+00 4482
2 TraesCS1D01G147600 chr1A 89.452 493 44 8 2 490 258737455 258737943 1.800000e-172 616
3 TraesCS1D01G147600 chr1B 97.524 2585 44 7 939 3522 297723972 297726537 0.000000e+00 4401
4 TraesCS1D01G147600 chr1B 81.752 274 20 6 629 873 297723439 297723711 5.960000e-48 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G147600 chr1D 203744716 203748239 3523 False 6508.0 6508 100.0000 1 3524 1 chr1D.!!$F1 3523
1 TraesCS1D01G147600 chr1A 258737455 258740953 3498 False 2549.0 4482 91.7245 2 3522 2 chr1A.!!$F1 3520
2 TraesCS1D01G147600 chr1B 297723439 297726537 3098 False 2301.5 4401 89.6380 629 3522 2 chr1B.!!$F1 2893

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
927 985 0.565674 ATTCCCCTCTCTCTCTCCCC 59.434 60.0 0.0 0.0 0.0 4.81 F
1596 1873 0.540830 AGACCTTCGGAGCTGTCACT 60.541 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2196 2473 1.557099 CACCAGGTGCCTGACTAGTA 58.443 55.000 19.04 0.0 46.3 1.82 R
3086 3364 2.063266 CGTTTGAAGCAGCTACGGTAA 58.937 47.619 7.45 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 8.996651 TTTGAAGGGAATTTTAGAGTCTTCTT 57.003 30.769 0.00 0.00 34.79 2.52
81 82 7.769272 CTTCTTAATGAAGGCAACACAAAAA 57.231 32.000 6.72 0.00 46.25 1.94
111 112 6.781014 AGAATACGGGAATACCATCTCTACAA 59.219 38.462 0.00 0.00 40.22 2.41
161 162 4.449743 GCAAAAATGCACACATCATGAACT 59.550 37.500 0.00 0.00 34.62 3.01
166 167 7.878477 AAATGCACACATCATGAACTTTAAG 57.122 32.000 0.00 0.00 34.62 1.85
193 194 1.435925 CGCTGCCCAGTGTATACGA 59.564 57.895 0.00 0.00 34.41 3.43
203 204 3.068165 CCAGTGTATACGAGATTGCTCCA 59.932 47.826 0.00 0.00 37.91 3.86
252 253 5.240183 CCGATCCATTGACAATTCATAGCTT 59.760 40.000 0.00 0.00 0.00 3.74
256 257 7.792374 TCCATTGACAATTCATAGCTTAGTC 57.208 36.000 0.00 0.00 0.00 2.59
263 264 8.097038 TGACAATTCATAGCTTAGTCTGAGTTT 58.903 33.333 0.00 0.00 0.00 2.66
268 269 9.979578 ATTCATAGCTTAGTCTGAGTTTATCTG 57.020 33.333 0.00 0.00 0.00 2.90
281 282 2.930682 GTTTATCTGCTCTCGGGTGAAC 59.069 50.000 0.00 0.00 0.00 3.18
287 288 1.347707 TGCTCTCGGGTGAACAAGAAT 59.652 47.619 0.00 0.00 0.00 2.40
292 293 3.064207 CTCGGGTGAACAAGAATTTCGA 58.936 45.455 0.00 0.00 0.00 3.71
328 329 9.942850 AAAATGATTCGAAAAACCCTGAATTAT 57.057 25.926 0.00 0.00 31.56 1.28
345 346 6.397272 TGAATTATTTTGACACCAAGGATGC 58.603 36.000 0.00 0.00 33.23 3.91
374 376 7.806409 ATTTTCTAGGTGCTTGCAAAATTTT 57.194 28.000 0.00 0.00 0.00 1.82
376 378 5.275067 TCTAGGTGCTTGCAAAATTTTGT 57.725 34.783 27.13 11.11 40.24 2.83
379 381 2.541383 GGTGCTTGCAAAATTTTGTGCC 60.541 45.455 27.13 20.26 40.14 5.01
380 382 1.329906 TGCTTGCAAAATTTTGTGCCG 59.670 42.857 27.13 16.17 40.14 5.69
391 393 6.515272 AAATTTTGTGCCGAGATTACATCT 57.485 33.333 0.00 0.00 43.70 2.90
404 406 1.407936 TACATCTGGAGGAGCTCAGC 58.592 55.000 17.19 6.27 31.08 4.26
448 453 4.494091 TCAAAGTTCCAAAATGCCCAAA 57.506 36.364 0.00 0.00 0.00 3.28
453 458 3.199727 AGTTCCAAAATGCCCAAAGTTGT 59.800 39.130 0.00 0.00 0.00 3.32
463 468 4.249661 TGCCCAAAGTTGTTTGAGTTTTC 58.750 39.130 0.00 0.00 45.22 2.29
467 472 5.407084 CCCAAAGTTGTTTGAGTTTTCGTTT 59.593 36.000 0.00 0.00 45.22 3.60
490 495 5.416271 TTTTTACCGAGCTCCTTAGATGT 57.584 39.130 8.47 0.00 0.00 3.06
491 496 4.650754 TTTACCGAGCTCCTTAGATGTC 57.349 45.455 8.47 0.00 0.00 3.06
492 497 2.145397 ACCGAGCTCCTTAGATGTCA 57.855 50.000 8.47 0.00 0.00 3.58
493 498 2.672098 ACCGAGCTCCTTAGATGTCAT 58.328 47.619 8.47 0.00 0.00 3.06
494 499 2.625790 ACCGAGCTCCTTAGATGTCATC 59.374 50.000 8.47 4.52 0.00 2.92
495 500 2.890311 CCGAGCTCCTTAGATGTCATCT 59.110 50.000 19.12 19.12 43.33 2.90
496 501 3.057596 CCGAGCTCCTTAGATGTCATCTC 60.058 52.174 18.74 3.90 40.76 2.75
497 502 3.364864 CGAGCTCCTTAGATGTCATCTCG 60.365 52.174 18.74 10.03 40.76 4.04
498 503 2.295909 AGCTCCTTAGATGTCATCTCGC 59.704 50.000 18.74 13.65 40.76 5.03
499 504 2.609244 GCTCCTTAGATGTCATCTCGCC 60.609 54.545 18.74 0.30 40.76 5.54
500 505 2.625314 CTCCTTAGATGTCATCTCGCCA 59.375 50.000 18.74 0.00 40.76 5.69
501 506 2.362397 TCCTTAGATGTCATCTCGCCAC 59.638 50.000 18.74 0.00 40.76 5.01
502 507 2.389059 CTTAGATGTCATCTCGCCACG 58.611 52.381 18.74 0.00 40.76 4.94
503 508 1.675552 TAGATGTCATCTCGCCACGA 58.324 50.000 18.74 0.00 40.76 4.35
504 509 0.817654 AGATGTCATCTCGCCACGAA 59.182 50.000 9.68 0.00 33.42 3.85
505 510 1.204704 AGATGTCATCTCGCCACGAAA 59.795 47.619 9.68 0.00 33.42 3.46
506 511 1.590238 GATGTCATCTCGCCACGAAAG 59.410 52.381 5.52 0.00 34.74 2.62
507 512 5.234474 AGATGTCATCTCGCCACGAAAGT 62.234 47.826 9.68 0.00 39.72 2.66
528 533 1.541588 GCAGGCACCTAGAAACTTTGG 59.458 52.381 0.00 0.00 0.00 3.28
529 534 2.863809 CAGGCACCTAGAAACTTTGGT 58.136 47.619 0.00 0.00 0.00 3.67
535 540 5.828299 CACCTAGAAACTTTGGTGTCAAA 57.172 39.130 0.00 0.00 43.41 2.69
536 541 6.202516 CACCTAGAAACTTTGGTGTCAAAA 57.797 37.500 0.00 0.00 43.41 2.44
537 542 6.626302 CACCTAGAAACTTTGGTGTCAAAAA 58.374 36.000 0.00 0.00 43.41 1.94
556 561 3.861276 AAGTTTAATACTTTGCCCCGC 57.139 42.857 0.00 0.00 44.73 6.13
557 562 2.797786 AGTTTAATACTTTGCCCCGCA 58.202 42.857 0.00 0.00 36.47 5.69
558 563 3.574826 AAGTTTAATACTTTGCCCCGCAA 59.425 39.130 0.00 0.00 44.73 4.85
704 714 2.171635 GGTCCACCGATGCAGAAAC 58.828 57.895 0.00 0.00 0.00 2.78
705 715 1.635663 GGTCCACCGATGCAGAAACG 61.636 60.000 0.00 0.00 0.00 3.60
729 739 1.612463 GCCTCCAGATCCATTTCATGC 59.388 52.381 0.00 0.00 0.00 4.06
770 780 3.131396 AGAGTAACAACAAGAACAGCCG 58.869 45.455 0.00 0.00 0.00 5.52
818 876 1.188863 ACTAGTACGCCCACCGATTT 58.811 50.000 0.00 0.00 41.02 2.17
873 931 2.296190 CGCCCTAAAATATCCCAAAGCC 59.704 50.000 0.00 0.00 0.00 4.35
874 932 2.632996 GCCCTAAAATATCCCAAAGCCC 59.367 50.000 0.00 0.00 0.00 5.19
875 933 3.239449 CCCTAAAATATCCCAAAGCCCC 58.761 50.000 0.00 0.00 0.00 5.80
876 934 3.239449 CCTAAAATATCCCAAAGCCCCC 58.761 50.000 0.00 0.00 0.00 5.40
927 985 0.565674 ATTCCCCTCTCTCTCTCCCC 59.434 60.000 0.00 0.00 0.00 4.81
1236 1489 1.000739 CACGGTACCTACTCCCCCA 59.999 63.158 10.90 0.00 0.00 4.96
1348 1601 1.080366 CTAGGGTTGCGCGTGTGTA 60.080 57.895 8.43 0.00 0.00 2.90
1353 1606 1.200839 GTTGCGCGTGTGTACTCAC 59.799 57.895 16.33 16.33 44.08 3.51
1360 1634 2.019951 GTGTGTACTCACGCGTGGG 61.020 63.158 36.29 36.29 46.49 4.61
1366 1640 2.702751 TACTCACGCGTGGGTTGTGG 62.703 60.000 45.53 23.47 42.68 4.17
1587 1864 2.168496 CAGTACTTCCAGACCTTCGGA 58.832 52.381 0.00 0.00 0.00 4.55
1596 1873 0.540830 AGACCTTCGGAGCTGTCACT 60.541 55.000 0.00 0.00 0.00 3.41
1770 2047 4.162690 GCGAATCCTGGCTCGGGT 62.163 66.667 16.41 0.00 35.60 5.28
1877 2154 0.689623 GCTAGCAGATATGGGCAGGT 59.310 55.000 10.63 0.00 0.00 4.00
2196 2473 2.036256 GCTGGTGGGAATGCACCT 59.964 61.111 0.00 0.00 41.80 4.00
2232 2509 3.518003 GCAGCTGCAGGTTATGGG 58.482 61.111 33.36 5.70 41.59 4.00
2535 2812 2.028658 TGCTCAGTAGAAGAGGCTGTTG 60.029 50.000 0.00 0.00 33.72 3.33
2997 3275 1.806542 TCCTTGCTTTGCTTTAGCTCG 59.193 47.619 3.10 0.00 42.66 5.03
3086 3364 5.350504 ACTATGCACTGATAGAAGCTTGT 57.649 39.130 2.10 1.06 31.36 3.16
3226 3505 4.634004 TGTGAATATGTTTCAGGGTTAGCG 59.366 41.667 0.00 0.00 0.00 4.26
3306 3585 5.012046 CCCTTCAAGCCTTTTGGTCTTAAAT 59.988 40.000 0.00 0.00 42.99 1.40
3310 3589 7.784633 TCAAGCCTTTTGGTCTTAAATTTTG 57.215 32.000 0.00 0.00 42.99 2.44
3311 3590 6.259829 TCAAGCCTTTTGGTCTTAAATTTTGC 59.740 34.615 0.00 0.00 42.99 3.68
3312 3591 5.928976 AGCCTTTTGGTCTTAAATTTTGCT 58.071 33.333 0.00 0.00 42.99 3.91
3313 3592 7.061566 AGCCTTTTGGTCTTAAATTTTGCTA 57.938 32.000 0.00 0.00 42.99 3.49
3314 3593 7.154656 AGCCTTTTGGTCTTAAATTTTGCTAG 58.845 34.615 0.00 0.00 42.99 3.42
3315 3594 6.929049 GCCTTTTGGTCTTAAATTTTGCTAGT 59.071 34.615 0.00 0.00 42.99 2.57
3316 3595 8.085909 GCCTTTTGGTCTTAAATTTTGCTAGTA 58.914 33.333 0.00 0.00 42.99 1.82
3317 3596 9.406828 CCTTTTGGTCTTAAATTTTGCTAGTAC 57.593 33.333 0.00 0.00 34.07 2.73
3522 3802 1.596752 TTGCACGTGACGCCATTCT 60.597 52.632 22.23 0.00 0.00 2.40
3523 3803 1.840630 TTGCACGTGACGCCATTCTG 61.841 55.000 22.23 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 8.437575 AGATGGTATTCCCGTATTCTACATTTT 58.562 33.333 0.00 0.00 35.15 1.82
81 82 7.455008 AGAGATGGTATTCCCGTATTCTACATT 59.545 37.037 0.00 0.00 35.15 2.71
85 86 7.464273 TGTAGAGATGGTATTCCCGTATTCTA 58.536 38.462 0.00 0.00 35.15 2.10
87 88 6.585695 TGTAGAGATGGTATTCCCGTATTC 57.414 41.667 0.00 0.00 35.15 1.75
99 100 7.781324 AATGTTTTTGGATTGTAGAGATGGT 57.219 32.000 0.00 0.00 0.00 3.55
152 153 3.199946 TCGGGCTCCTTAAAGTTCATGAT 59.800 43.478 0.00 0.00 0.00 2.45
222 223 6.155827 TGAATTGTCAATGGATCGGTTTTTC 58.844 36.000 0.00 0.00 0.00 2.29
228 229 4.758674 AGCTATGAATTGTCAATGGATCGG 59.241 41.667 0.00 0.00 37.30 4.18
237 238 7.175347 ACTCAGACTAAGCTATGAATTGTCA 57.825 36.000 0.00 0.00 38.41 3.58
252 253 4.576873 CCGAGAGCAGATAAACTCAGACTA 59.423 45.833 0.00 0.00 35.28 2.59
256 257 2.428890 ACCCGAGAGCAGATAAACTCAG 59.571 50.000 0.00 0.00 35.28 3.35
263 264 1.847328 TGTTCACCCGAGAGCAGATA 58.153 50.000 0.00 0.00 0.00 1.98
268 269 2.100605 ATTCTTGTTCACCCGAGAGC 57.899 50.000 0.00 0.00 0.00 4.09
306 307 9.202273 CAAAATAATTCAGGGTTTTTCGAATCA 57.798 29.630 0.00 0.00 0.00 2.57
311 312 7.095816 GGTGTCAAAATAATTCAGGGTTTTTCG 60.096 37.037 0.00 0.00 0.00 3.46
318 319 5.480073 TCCTTGGTGTCAAAATAATTCAGGG 59.520 40.000 0.00 0.00 31.77 4.45
328 329 3.295093 TCAAGCATCCTTGGTGTCAAAA 58.705 40.909 0.00 0.00 46.69 2.44
345 346 5.125100 TGCAAGCACCTAGAAAATTCAAG 57.875 39.130 0.00 0.00 0.00 3.02
391 393 0.478072 TTTTTGGCTGAGCTCCTCCA 59.522 50.000 17.19 17.19 0.00 3.86
421 426 5.530543 GGGCATTTTGGAACTTTGATTTTCA 59.469 36.000 0.00 0.00 0.00 2.69
430 435 4.198530 CAACTTTGGGCATTTTGGAACTT 58.801 39.130 0.00 0.00 0.00 2.66
486 491 1.590238 CTTTCGTGGCGAGATGACATC 59.410 52.381 7.39 7.39 38.42 3.06
489 494 0.716108 CACTTTCGTGGCGAGATGAC 59.284 55.000 0.00 0.00 37.14 3.06
490 495 1.014044 GCACTTTCGTGGCGAGATGA 61.014 55.000 0.00 0.00 41.51 2.92
491 496 1.291184 TGCACTTTCGTGGCGAGATG 61.291 55.000 0.00 0.00 41.51 2.90
492 497 1.005037 TGCACTTTCGTGGCGAGAT 60.005 52.632 0.00 0.00 41.51 2.75
493 498 1.664649 CTGCACTTTCGTGGCGAGA 60.665 57.895 0.00 0.00 41.51 4.04
494 499 2.671177 CCTGCACTTTCGTGGCGAG 61.671 63.158 0.00 0.00 41.51 5.03
495 500 2.664851 CCTGCACTTTCGTGGCGA 60.665 61.111 0.00 0.00 41.51 5.54
496 501 4.389576 GCCTGCACTTTCGTGGCG 62.390 66.667 0.00 0.00 41.51 5.69
497 502 3.286751 TGCCTGCACTTTCGTGGC 61.287 61.111 4.02 4.02 41.51 5.01
498 503 2.639286 GTGCCTGCACTTTCGTGG 59.361 61.111 14.77 0.00 43.12 4.94
499 504 0.602638 TAGGTGCCTGCACTTTCGTG 60.603 55.000 20.52 0.00 45.52 4.35
500 505 0.320771 CTAGGTGCCTGCACTTTCGT 60.321 55.000 20.52 4.94 45.52 3.85
501 506 0.037326 TCTAGGTGCCTGCACTTTCG 60.037 55.000 20.52 9.08 45.52 3.46
502 507 2.185004 TTCTAGGTGCCTGCACTTTC 57.815 50.000 20.52 5.66 45.52 2.62
503 508 2.158608 AGTTTCTAGGTGCCTGCACTTT 60.159 45.455 20.52 12.30 45.52 2.66
504 509 1.421646 AGTTTCTAGGTGCCTGCACTT 59.578 47.619 20.52 16.21 45.52 3.16
505 510 1.059913 AGTTTCTAGGTGCCTGCACT 58.940 50.000 20.52 10.10 45.52 4.40
506 511 1.897560 AAGTTTCTAGGTGCCTGCAC 58.102 50.000 13.75 13.75 45.49 4.57
507 512 2.229792 CAAAGTTTCTAGGTGCCTGCA 58.770 47.619 0.12 0.00 0.00 4.41
508 513 1.541588 CCAAAGTTTCTAGGTGCCTGC 59.458 52.381 0.12 0.00 0.00 4.85
509 514 2.554032 CACCAAAGTTTCTAGGTGCCTG 59.446 50.000 9.85 0.00 44.25 4.85
510 515 2.863809 CACCAAAGTTTCTAGGTGCCT 58.136 47.619 9.85 0.00 44.25 4.75
537 542 2.797786 TGCGGGGCAAAGTATTAAACT 58.202 42.857 0.00 0.00 34.59 2.66
573 578 7.713073 TGCCTCAAAAAGGGTAAAATAACAAAG 59.287 33.333 0.00 0.00 46.32 2.77
586 591 5.833406 AACAAAAATTGCCTCAAAAAGGG 57.167 34.783 0.00 0.00 46.32 3.95
653 660 3.597255 TCCCGTGCGTGAACAATAATAA 58.403 40.909 0.00 0.00 0.00 1.40
704 714 2.032860 AATGGATCTGGAGGCCGACG 62.033 60.000 0.00 0.00 0.00 5.12
705 715 0.181350 AAATGGATCTGGAGGCCGAC 59.819 55.000 0.00 0.00 0.00 4.79
709 719 1.612463 GCATGAAATGGATCTGGAGGC 59.388 52.381 0.00 0.00 46.86 4.70
729 739 5.209818 TCTACTATATGGGCCGAACTTTG 57.790 43.478 0.00 0.00 0.00 2.77
770 780 3.827302 TCTTACTATCTCATCGGGGCTTC 59.173 47.826 0.00 0.00 0.00 3.86
883 941 2.942648 GATTTCGGCTTCGGGAGGGG 62.943 65.000 0.00 0.00 34.13 4.79
884 942 1.523938 GATTTCGGCTTCGGGAGGG 60.524 63.158 0.00 0.00 34.13 4.30
885 943 1.523938 GGATTTCGGCTTCGGGAGG 60.524 63.158 0.00 0.00 34.13 4.30
886 944 1.523938 GGGATTTCGGCTTCGGGAG 60.524 63.158 0.00 0.00 34.13 4.30
887 945 2.587889 GGGATTTCGGCTTCGGGA 59.412 61.111 0.00 0.00 34.13 5.14
888 946 2.516225 GGGGATTTCGGCTTCGGG 60.516 66.667 0.00 0.00 34.13 5.14
889 947 2.516225 GGGGGATTTCGGCTTCGG 60.516 66.667 0.00 0.00 34.13 4.30
890 948 0.751643 ATTGGGGGATTTCGGCTTCG 60.752 55.000 0.00 0.00 0.00 3.79
891 949 1.409064 GAATTGGGGGATTTCGGCTTC 59.591 52.381 0.00 0.00 0.00 3.86
892 950 1.485124 GAATTGGGGGATTTCGGCTT 58.515 50.000 0.00 0.00 0.00 4.35
893 951 0.397114 GGAATTGGGGGATTTCGGCT 60.397 55.000 0.00 0.00 0.00 5.52
894 952 1.399744 GGGAATTGGGGGATTTCGGC 61.400 60.000 0.00 0.00 0.00 5.54
895 953 0.759060 GGGGAATTGGGGGATTTCGG 60.759 60.000 0.00 0.00 0.00 4.30
959 1212 1.476110 CCTCTCCTCGGATTCTCTCGT 60.476 57.143 0.00 0.00 0.00 4.18
1236 1489 0.250513 GGGTGAAGAGACCAAGCGAT 59.749 55.000 0.00 0.00 37.80 4.58
1348 1601 2.587753 CACAACCCACGCGTGAGT 60.588 61.111 39.10 30.78 32.23 3.41
1353 1606 1.587613 CAAAACCACAACCCACGCG 60.588 57.895 3.53 3.53 0.00 6.01
1360 1634 3.192633 ACCTGAGACAACAAAACCACAAC 59.807 43.478 0.00 0.00 0.00 3.32
1366 1640 3.560068 ACATCGACCTGAGACAACAAAAC 59.440 43.478 0.00 0.00 0.00 2.43
1587 1864 1.141657 ACCACAACATCAGTGACAGCT 59.858 47.619 0.00 0.00 39.30 4.24
1596 1873 4.260985 GGTCATACATCACCACAACATCA 58.739 43.478 0.00 0.00 32.33 3.07
1779 2056 2.602676 CCCACCTCCCATGGAACGT 61.603 63.158 15.22 2.17 39.87 3.99
1877 2154 2.908428 CACCACTGCCTTGCTGCA 60.908 61.111 0.00 0.00 39.37 4.41
2196 2473 1.557099 CACCAGGTGCCTGACTAGTA 58.443 55.000 19.04 0.00 46.30 1.82
3086 3364 2.063266 CGTTTGAAGCAGCTACGGTAA 58.937 47.619 7.45 0.00 0.00 2.85
3226 3505 8.668510 ATCAATCTACATACCAAACATCAGAC 57.331 34.615 0.00 0.00 0.00 3.51
3306 3585 3.872182 TCACTGCAAACGTACTAGCAAAA 59.128 39.130 0.00 0.00 36.44 2.44
3310 3589 5.575606 TCTTTATCACTGCAAACGTACTAGC 59.424 40.000 0.00 0.00 0.00 3.42
3311 3590 6.237595 GCTCTTTATCACTGCAAACGTACTAG 60.238 42.308 0.00 0.00 0.00 2.57
3312 3591 5.575606 GCTCTTTATCACTGCAAACGTACTA 59.424 40.000 0.00 0.00 0.00 1.82
3313 3592 4.389077 GCTCTTTATCACTGCAAACGTACT 59.611 41.667 0.00 0.00 0.00 2.73
3314 3593 4.389077 AGCTCTTTATCACTGCAAACGTAC 59.611 41.667 0.00 0.00 0.00 3.67
3315 3594 4.566004 AGCTCTTTATCACTGCAAACGTA 58.434 39.130 0.00 0.00 0.00 3.57
3316 3595 3.403038 AGCTCTTTATCACTGCAAACGT 58.597 40.909 0.00 0.00 0.00 3.99
3317 3596 4.410492 AAGCTCTTTATCACTGCAAACG 57.590 40.909 0.00 0.00 0.00 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.