Multiple sequence alignment - TraesCS1D01G146100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G146100 chr1D 100.000 3653 0 0 1 3653 201644590 201640938 0.000000e+00 6746.0
1 TraesCS1D01G146100 chr1B 91.939 918 61 10 834 1741 289524812 289523898 0.000000e+00 1273.0
2 TraesCS1D01G146100 chr1B 93.651 693 36 6 2286 2976 289522853 289522167 0.000000e+00 1029.0
3 TraesCS1D01G146100 chr1B 92.909 691 33 5 2976 3653 289522138 289521451 0.000000e+00 990.0
4 TraesCS1D01G146100 chr1B 78.283 396 79 5 3 392 488641280 488641674 7.830000e-62 248.0
5 TraesCS1D01G146100 chr1B 90.909 55 4 1 1790 1843 289523904 289523850 5.060000e-09 73.1
6 TraesCS1D01G146100 chr1B 97.297 37 0 1 750 785 289524848 289524812 1.100000e-05 62.1
7 TraesCS1D01G146100 chr1A 95.147 783 36 2 775 1557 255900230 255899450 0.000000e+00 1234.0
8 TraesCS1D01G146100 chr1A 91.388 627 42 8 2286 2907 255898755 255898136 0.000000e+00 848.0
9 TraesCS1D01G146100 chr1A 86.885 183 19 3 1601 1780 255899436 255899256 2.220000e-47 200.0
10 TraesCS1D01G146100 chr1A 83.902 205 20 7 1883 2086 255899258 255899066 2.240000e-42 183.0
11 TraesCS1D01G146100 chr1A 91.489 94 6 2 3560 3653 255878459 255878368 1.060000e-25 128.0
12 TraesCS1D01G146100 chr7D 82.549 659 106 9 3 656 553832667 553832013 4.090000e-159 571.0
13 TraesCS1D01G146100 chr5A 93.471 291 19 0 1112 1402 673402922 673403212 2.010000e-117 433.0
14 TraesCS1D01G146100 chr4D 92.096 291 23 0 1112 1402 493948981 493949271 9.440000e-111 411.0
15 TraesCS1D01G146100 chr4B 92.096 291 23 0 1112 1402 632702960 632703250 9.440000e-111 411.0
16 TraesCS1D01G146100 chr3A 77.307 661 120 23 11 656 40990515 40989870 2.680000e-96 363.0
17 TraesCS1D01G146100 chr6B 88.055 293 35 0 1110 1402 694126326 694126618 7.510000e-92 348.0
18 TraesCS1D01G146100 chr6A 88.055 293 35 0 1110 1402 603192776 603193068 7.510000e-92 348.0
19 TraesCS1D01G146100 chr6A 80.074 271 54 0 1133 1403 588427642 588427372 6.190000e-48 202.0
20 TraesCS1D01G146100 chr6D 87.713 293 36 0 1110 1402 456464454 456464746 3.490000e-90 342.0
21 TraesCS1D01G146100 chr6D 97.143 35 1 0 775 809 332952366 332952332 3.940000e-05 60.2
22 TraesCS1D01G146100 chr7A 90.909 55 4 1 1790 1843 346410313 346410259 5.060000e-09 73.1
23 TraesCS1D01G146100 chr2B 97.143 35 0 1 775 808 22731192 22731226 1.420000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G146100 chr1D 201640938 201644590 3652 True 6746.00 6746 100.0000 1 3653 1 chr1D.!!$R1 3652
1 TraesCS1D01G146100 chr1B 289521451 289524848 3397 True 685.44 1273 93.3410 750 3653 5 chr1B.!!$R1 2903
2 TraesCS1D01G146100 chr1A 255898136 255900230 2094 True 616.25 1234 89.3305 775 2907 4 chr1A.!!$R2 2132
3 TraesCS1D01G146100 chr7D 553832013 553832667 654 True 571.00 571 82.5490 3 656 1 chr7D.!!$R1 653
4 TraesCS1D01G146100 chr3A 40989870 40990515 645 True 363.00 363 77.3070 11 656 1 chr3A.!!$R1 645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 82 0.107312 CAATCTCCCTCACTGCCCAG 60.107 60.0 0.00 0.0 0.00 4.45 F
791 805 0.179200 CGTGCCGTGCATAAAAGGTC 60.179 55.0 1.90 0.0 41.91 3.85 F
1529 1546 0.320771 AGCGCCGTGAAGAAACATCT 60.321 50.0 2.29 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 1523 0.163146 GTTTCTTCACGGCGCTGTAC 59.837 55.0 23.84 11.96 0.0 2.90 R
1849 1871 0.611200 ACAGCTTACCACATACGCCA 59.389 50.0 0.00 0.00 0.0 5.69 R
3364 4223 0.182537 TTAGCCCCATTCCACATCGG 59.817 55.0 0.00 0.00 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.990426 AGCACACTAAAATCAAATTGCCAC 59.010 37.500 0.00 0.00 0.00 5.01
51 52 2.036958 TGCCACGGTCCATTATTCAG 57.963 50.000 0.00 0.00 0.00 3.02
73 74 2.502947 CACATGTCTCCAATCTCCCTCA 59.497 50.000 0.00 0.00 0.00 3.86
81 82 0.107312 CAATCTCCCTCACTGCCCAG 60.107 60.000 0.00 0.00 0.00 4.45
82 83 0.252881 AATCTCCCTCACTGCCCAGA 60.253 55.000 1.69 0.00 0.00 3.86
88 89 1.222936 CTCACTGCCCAGATGGACC 59.777 63.158 0.00 0.00 37.39 4.46
97 98 2.372264 CCCAGATGGACCACAAAGATG 58.628 52.381 0.00 0.00 37.39 2.90
112 113 4.463891 ACAAAGATGTTTGATCCCATGTCC 59.536 41.667 21.09 0.00 45.22 4.02
121 122 3.902218 TGATCCCATGTCCCTGAATTTC 58.098 45.455 0.00 0.00 0.00 2.17
130 131 3.008594 TGTCCCTGAATTTCGCTTCCTTA 59.991 43.478 0.00 0.00 0.00 2.69
133 134 3.243201 CCCTGAATTTCGCTTCCTTATGC 60.243 47.826 0.00 0.00 0.00 3.14
135 136 4.497006 CCTGAATTTCGCTTCCTTATGCAG 60.497 45.833 0.00 0.00 0.00 4.41
190 191 3.181461 CCGACATCTTCATAGGCCTTTCT 60.181 47.826 12.58 0.00 0.00 2.52
193 194 5.431765 GACATCTTCATAGGCCTTTCTGAA 58.568 41.667 12.58 16.77 0.00 3.02
202 203 2.695147 AGGCCTTTCTGAACAAACCTTG 59.305 45.455 0.00 0.00 0.00 3.61
205 206 2.543653 CCTTTCTGAACAAACCTTGCCG 60.544 50.000 0.00 0.00 0.00 5.69
222 223 1.475403 CCGACCACAGACCATCTAGT 58.525 55.000 0.00 0.00 0.00 2.57
223 224 1.405821 CCGACCACAGACCATCTAGTC 59.594 57.143 0.00 0.00 37.01 2.59
229 230 1.751924 ACAGACCATCTAGTCGCCTTC 59.248 52.381 0.00 0.00 41.83 3.46
241 242 2.273179 CGCCTTCGGGATCGGGATA 61.273 63.158 0.00 0.00 37.25 2.59
250 251 2.695147 CGGGATCGGGATATCATGATCA 59.305 50.000 25.49 0.00 39.14 2.92
256 257 6.996879 GGATCGGGATATCATGATCATCAAAT 59.003 38.462 25.49 0.00 39.14 2.32
259 260 8.082672 TCGGGATATCATGATCATCAAATACT 57.917 34.615 12.53 0.00 0.00 2.12
269 270 3.305720 TCATCAAATACTAGCCCGTCCT 58.694 45.455 0.00 0.00 0.00 3.85
271 272 3.028094 TCAAATACTAGCCCGTCCTCT 57.972 47.619 0.00 0.00 0.00 3.69
295 296 3.395607 CCTTATCCATCAGAACCATCCCA 59.604 47.826 0.00 0.00 0.00 4.37
300 301 1.216175 CATCAGAACCATCCCACCCAT 59.784 52.381 0.00 0.00 0.00 4.00
304 305 1.010793 AGAACCATCCCACCCATCCTA 59.989 52.381 0.00 0.00 0.00 2.94
307 308 1.763770 CATCCCACCCATCCTAGCC 59.236 63.158 0.00 0.00 0.00 3.93
310 311 2.808206 CCCACCCATCCTAGCCGAC 61.808 68.421 0.00 0.00 0.00 4.79
418 419 4.719369 GTCTCAGCCGCCGTCGTT 62.719 66.667 0.00 0.00 0.00 3.85
421 422 4.595538 TCAGCCGCCGTCGTTGTT 62.596 61.111 0.00 0.00 0.00 2.83
422 423 2.735478 CAGCCGCCGTCGTTGTTA 60.735 61.111 0.00 0.00 0.00 2.41
431 432 1.734117 GTCGTTGTTACCGGGGTCG 60.734 63.158 6.32 1.77 0.00 4.79
432 433 3.113979 CGTTGTTACCGGGGTCGC 61.114 66.667 6.32 0.00 34.56 5.19
433 434 2.030862 GTTGTTACCGGGGTCGCA 59.969 61.111 6.32 0.00 34.56 5.10
443 444 1.299976 GGGGTCGCATGAGGTTTCT 59.700 57.895 0.00 0.00 0.00 2.52
445 446 1.534729 GGGTCGCATGAGGTTTCTTT 58.465 50.000 0.00 0.00 0.00 2.52
459 460 2.987282 TTCTTTGCAGCAGTCGCCGA 62.987 55.000 0.00 0.00 39.83 5.54
460 461 2.358615 TTTGCAGCAGTCGCCGAT 60.359 55.556 0.00 0.00 39.83 4.18
462 463 4.819761 TGCAGCAGTCGCCGATCC 62.820 66.667 0.00 0.00 39.83 3.36
463 464 4.819761 GCAGCAGTCGCCGATCCA 62.820 66.667 0.00 0.00 39.83 3.41
464 465 2.887568 CAGCAGTCGCCGATCCAC 60.888 66.667 0.00 0.00 39.83 4.02
465 466 3.071206 AGCAGTCGCCGATCCACT 61.071 61.111 0.00 0.00 39.83 4.00
511 523 2.227968 CTGACGAAGAAAAGCCGCCG 62.228 60.000 0.00 0.00 0.00 6.46
626 640 2.587194 CCTCGCAATCGCCTCCTG 60.587 66.667 0.00 0.00 35.26 3.86
641 655 2.047655 CTGCCCCGTAGCGTTTCA 60.048 61.111 0.00 0.00 34.65 2.69
658 672 2.038762 ACCTGTGGTGGACCCCTT 60.039 61.111 0.00 0.00 32.98 3.95
659 673 1.240727 ACCTGTGGTGGACCCCTTA 59.759 57.895 0.00 0.00 32.98 2.69
660 674 1.131928 ACCTGTGGTGGACCCCTTAC 61.132 60.000 0.00 0.00 32.98 2.34
661 675 1.683441 CTGTGGTGGACCCCTTACC 59.317 63.158 0.00 0.00 34.29 2.85
662 676 2.180159 CTGTGGTGGACCCCTTACCG 62.180 65.000 0.00 0.00 37.29 4.02
663 677 3.324108 TGGTGGACCCCTTACCGC 61.324 66.667 0.00 0.00 37.29 5.68
664 678 4.462280 GGTGGACCCCTTACCGCG 62.462 72.222 0.00 0.00 37.53 6.46
665 679 3.698820 GTGGACCCCTTACCGCGT 61.699 66.667 4.92 0.00 0.00 6.01
666 680 3.384532 TGGACCCCTTACCGCGTC 61.385 66.667 4.92 0.00 0.00 5.19
667 681 4.152964 GGACCCCTTACCGCGTCC 62.153 72.222 4.92 0.00 38.18 4.79
668 682 3.073101 GACCCCTTACCGCGTCCT 61.073 66.667 4.92 0.00 0.00 3.85
669 683 3.366739 GACCCCTTACCGCGTCCTG 62.367 68.421 4.92 0.00 0.00 3.86
670 684 3.387947 CCCCTTACCGCGTCCTGT 61.388 66.667 4.92 0.00 0.00 4.00
671 685 2.660802 CCCTTACCGCGTCCTGTT 59.339 61.111 4.92 0.00 0.00 3.16
672 686 1.606885 CCCCTTACCGCGTCCTGTTA 61.607 60.000 4.92 0.00 0.00 2.41
673 687 0.459063 CCCTTACCGCGTCCTGTTAC 60.459 60.000 4.92 0.00 0.00 2.50
674 688 0.529378 CCTTACCGCGTCCTGTTACT 59.471 55.000 4.92 0.00 0.00 2.24
675 689 1.067354 CCTTACCGCGTCCTGTTACTT 60.067 52.381 4.92 0.00 0.00 2.24
676 690 2.164219 CCTTACCGCGTCCTGTTACTTA 59.836 50.000 4.92 0.00 0.00 2.24
677 691 2.919666 TACCGCGTCCTGTTACTTAC 57.080 50.000 4.92 0.00 0.00 2.34
678 692 0.961019 ACCGCGTCCTGTTACTTACA 59.039 50.000 4.92 0.00 34.95 2.41
679 693 1.336240 ACCGCGTCCTGTTACTTACAC 60.336 52.381 4.92 0.00 32.10 2.90
680 694 1.336148 CCGCGTCCTGTTACTTACACA 60.336 52.381 4.92 0.00 32.10 3.72
681 695 1.717645 CGCGTCCTGTTACTTACACAC 59.282 52.381 0.00 0.00 32.10 3.82
682 696 2.064014 GCGTCCTGTTACTTACACACC 58.936 52.381 0.00 0.00 32.10 4.16
683 697 2.288640 GCGTCCTGTTACTTACACACCT 60.289 50.000 0.00 0.00 32.10 4.00
684 698 3.572584 CGTCCTGTTACTTACACACCTC 58.427 50.000 0.00 0.00 32.10 3.85
685 699 3.005050 CGTCCTGTTACTTACACACCTCA 59.995 47.826 0.00 0.00 32.10 3.86
686 700 4.500205 CGTCCTGTTACTTACACACCTCAA 60.500 45.833 0.00 0.00 32.10 3.02
687 701 5.548406 GTCCTGTTACTTACACACCTCAAT 58.452 41.667 0.00 0.00 32.10 2.57
688 702 5.995897 GTCCTGTTACTTACACACCTCAATT 59.004 40.000 0.00 0.00 32.10 2.32
689 703 5.995282 TCCTGTTACTTACACACCTCAATTG 59.005 40.000 0.00 0.00 32.10 2.32
690 704 5.995282 CCTGTTACTTACACACCTCAATTGA 59.005 40.000 8.12 8.12 32.10 2.57
691 705 6.073222 CCTGTTACTTACACACCTCAATTGAC 60.073 42.308 3.38 0.00 32.10 3.18
692 706 5.761234 TGTTACTTACACACCTCAATTGACC 59.239 40.000 3.38 0.00 0.00 4.02
693 707 3.751518 ACTTACACACCTCAATTGACCC 58.248 45.455 3.38 0.00 0.00 4.46
694 708 3.394606 ACTTACACACCTCAATTGACCCT 59.605 43.478 3.38 0.00 0.00 4.34
695 709 4.141251 ACTTACACACCTCAATTGACCCTT 60.141 41.667 3.38 0.00 0.00 3.95
696 710 2.586425 ACACACCTCAATTGACCCTTG 58.414 47.619 3.38 2.71 0.00 3.61
697 711 2.174639 ACACACCTCAATTGACCCTTGA 59.825 45.455 3.38 0.00 0.00 3.02
698 712 2.816087 CACACCTCAATTGACCCTTGAG 59.184 50.000 3.38 6.16 45.94 3.02
702 716 3.988976 CTCAATTGACCCTTGAGGAGA 57.011 47.619 3.38 0.00 43.76 3.71
703 717 3.604582 CTCAATTGACCCTTGAGGAGAC 58.395 50.000 3.38 0.00 43.76 3.36
704 718 3.262915 CTCAATTGACCCTTGAGGAGACT 59.737 47.826 3.38 0.00 43.76 3.24
715 729 3.194419 AGGAGACTCCCTAACGAGC 57.806 57.895 18.32 0.00 37.19 5.03
716 730 0.626916 AGGAGACTCCCTAACGAGCT 59.373 55.000 18.32 0.00 37.19 4.09
717 731 1.026584 GGAGACTCCCTAACGAGCTC 58.973 60.000 10.74 2.73 34.76 4.09
718 732 1.026584 GAGACTCCCTAACGAGCTCC 58.973 60.000 8.47 0.00 31.95 4.70
719 733 0.626916 AGACTCCCTAACGAGCTCCT 59.373 55.000 8.47 0.00 32.79 3.69
720 734 1.845143 AGACTCCCTAACGAGCTCCTA 59.155 52.381 8.47 0.00 32.79 2.94
721 735 2.241685 AGACTCCCTAACGAGCTCCTAA 59.758 50.000 8.47 0.00 32.79 2.69
722 736 3.022406 GACTCCCTAACGAGCTCCTAAA 58.978 50.000 8.47 0.00 32.79 1.85
723 737 3.637694 GACTCCCTAACGAGCTCCTAAAT 59.362 47.826 8.47 0.00 32.79 1.40
724 738 4.031611 ACTCCCTAACGAGCTCCTAAATT 58.968 43.478 8.47 0.00 32.79 1.82
725 739 4.141914 ACTCCCTAACGAGCTCCTAAATTG 60.142 45.833 8.47 0.00 32.79 2.32
726 740 3.134081 TCCCTAACGAGCTCCTAAATTGG 59.866 47.826 8.47 0.66 0.00 3.16
727 741 3.118371 CCCTAACGAGCTCCTAAATTGGT 60.118 47.826 8.47 0.00 0.00 3.67
728 742 4.514401 CCTAACGAGCTCCTAAATTGGTT 58.486 43.478 8.47 6.38 0.00 3.67
729 743 4.332819 CCTAACGAGCTCCTAAATTGGTTG 59.667 45.833 8.47 0.00 0.00 3.77
730 744 2.084546 ACGAGCTCCTAAATTGGTTGC 58.915 47.619 8.47 0.00 0.00 4.17
731 745 2.290323 ACGAGCTCCTAAATTGGTTGCT 60.290 45.455 8.47 0.00 39.25 3.91
732 746 2.352960 CGAGCTCCTAAATTGGTTGCTC 59.647 50.000 8.47 15.56 43.57 4.26
733 747 2.685388 GAGCTCCTAAATTGGTTGCTCC 59.315 50.000 0.87 0.00 42.53 4.70
734 748 2.310052 AGCTCCTAAATTGGTTGCTCCT 59.690 45.455 0.00 0.00 34.84 3.69
735 749 3.092301 GCTCCTAAATTGGTTGCTCCTT 58.908 45.455 0.80 0.00 37.07 3.36
736 750 3.511540 GCTCCTAAATTGGTTGCTCCTTT 59.488 43.478 0.80 0.00 37.07 3.11
737 751 4.021104 GCTCCTAAATTGGTTGCTCCTTTT 60.021 41.667 0.80 3.79 37.07 2.27
738 752 5.511373 GCTCCTAAATTGGTTGCTCCTTTTT 60.511 40.000 0.80 3.52 37.07 1.94
791 805 0.179200 CGTGCCGTGCATAAAAGGTC 60.179 55.000 1.90 0.00 41.91 3.85
802 816 1.873698 TAAAAGGTCGTGTGTGGAGC 58.126 50.000 0.00 0.00 0.00 4.70
870 884 1.065928 CTAGCGAGTGGCCCTAACG 59.934 63.158 0.00 1.97 45.17 3.18
871 885 1.664321 CTAGCGAGTGGCCCTAACGT 61.664 60.000 0.00 0.00 45.17 3.99
888 902 0.323629 CGTGCTCCCTAGAACCCAAA 59.676 55.000 0.00 0.00 0.00 3.28
946 963 2.531376 GCCGCGAAACCCTAATCGG 61.531 63.158 8.23 0.00 39.38 4.18
1070 1087 1.138047 CCTGCGTCCGTTCGTGTATC 61.138 60.000 0.00 0.00 0.00 2.24
1446 1463 9.418045 GTTTTATGAGATCCTGTATTAGCTCTC 57.582 37.037 0.00 0.00 35.69 3.20
1472 1489 4.706035 AGAAGATCTGGATGCTTGTGATC 58.294 43.478 0.00 0.00 35.19 2.92
1473 1490 4.409574 AGAAGATCTGGATGCTTGTGATCT 59.590 41.667 0.00 0.00 43.67 2.75
1480 1497 1.086067 ATGCTTGTGATCTCGCACGG 61.086 55.000 0.00 0.00 41.63 4.94
1485 1502 4.193334 TGATCTCGCACGGCTCCG 62.193 66.667 6.79 6.79 46.03 4.63
1498 1515 1.951631 GCTCCGCCTAGATTCACGC 60.952 63.158 0.00 0.00 0.00 5.34
1499 1516 1.300233 CTCCGCCTAGATTCACGCC 60.300 63.158 0.00 0.00 0.00 5.68
1500 1517 2.016393 CTCCGCCTAGATTCACGCCA 62.016 60.000 0.00 0.00 0.00 5.69
1506 1523 2.159517 GCCTAGATTCACGCCAAAACAG 60.160 50.000 0.00 0.00 0.00 3.16
1511 1528 3.498397 AGATTCACGCCAAAACAGTACAG 59.502 43.478 0.00 0.00 0.00 2.74
1527 1544 0.884704 ACAGCGCCGTGAAGAAACAT 60.885 50.000 2.29 0.00 0.00 2.71
1529 1546 0.320771 AGCGCCGTGAAGAAACATCT 60.321 50.000 2.29 0.00 0.00 2.90
1530 1547 0.517316 GCGCCGTGAAGAAACATCTT 59.483 50.000 0.00 0.00 0.00 2.40
1551 1568 6.906659 TCTTAAACGATGATAGGGTATCGAC 58.093 40.000 12.81 0.00 46.67 4.20
1559 1576 5.306114 TGATAGGGTATCGACTCTCTTGA 57.694 43.478 0.00 0.00 37.63 3.02
1560 1577 5.882040 TGATAGGGTATCGACTCTCTTGAT 58.118 41.667 0.00 0.00 37.63 2.57
1571 1588 6.096036 TCGACTCTCTTGATTTCTTTAGCAG 58.904 40.000 0.00 0.00 0.00 4.24
1575 1592 5.171476 TCTCTTGATTTCTTTAGCAGACGG 58.829 41.667 0.00 0.00 0.00 4.79
1597 1615 3.187637 GTGCATGCTTTTGAATGTTGCAT 59.812 39.130 20.33 0.00 43.96 3.96
1603 1621 5.808403 TGCTTTTGAATGTTGCATGAAAAC 58.192 33.333 0.00 0.29 0.00 2.43
1622 1640 7.662897 TGAAAACTGTCTTAAAACACACCTTT 58.337 30.769 0.00 0.00 0.00 3.11
1658 1676 6.043327 TCTTTTATGACGTTGTCACTGTTG 57.957 37.500 1.11 0.00 45.65 3.33
1698 1720 6.505272 AGTATAATTAGAGTGCCTGACGTTC 58.495 40.000 0.00 0.00 0.00 3.95
1732 1754 5.739935 GCTGTTGTCAAAATTCCTCCATGTT 60.740 40.000 0.00 0.00 0.00 2.71
1740 1762 7.809806 GTCAAAATTCCTCCATGTTAAAGTCTG 59.190 37.037 0.00 0.00 0.00 3.51
1741 1763 5.904362 AATTCCTCCATGTTAAAGTCTGC 57.096 39.130 0.00 0.00 0.00 4.26
1758 1780 7.651027 AAGTCTGCCATTATTTGATTTAGCT 57.349 32.000 0.00 0.00 0.00 3.32
1777 1799 3.625938 GCTATGTAGCTTTCATTGCTGC 58.374 45.455 20.89 0.00 45.62 5.25
1781 1803 3.840468 TGTAGCTTTCATTGCTGCATTG 58.160 40.909 16.23 16.23 45.40 2.82
1782 1804 2.380084 AGCTTTCATTGCTGCATTGG 57.620 45.000 20.53 9.04 39.56 3.16
1783 1805 1.621814 AGCTTTCATTGCTGCATTGGT 59.378 42.857 20.53 2.43 39.56 3.67
1784 1806 2.827322 AGCTTTCATTGCTGCATTGGTA 59.173 40.909 20.53 9.48 39.56 3.25
1785 1807 3.258872 AGCTTTCATTGCTGCATTGGTAA 59.741 39.130 20.53 14.80 39.56 2.85
1786 1808 3.995705 GCTTTCATTGCTGCATTGGTAAA 59.004 39.130 20.53 14.50 0.00 2.01
1787 1809 4.632688 GCTTTCATTGCTGCATTGGTAAAT 59.367 37.500 20.53 0.22 0.00 1.40
1788 1810 5.220529 GCTTTCATTGCTGCATTGGTAAATC 60.221 40.000 20.53 9.52 0.00 2.17
1789 1811 5.402997 TTCATTGCTGCATTGGTAAATCA 57.597 34.783 20.53 1.27 0.00 2.57
1790 1812 5.001237 TCATTGCTGCATTGGTAAATCAG 57.999 39.130 20.53 0.00 0.00 2.90
1798 1820 5.499313 TGCATTGGTAAATCAGATCTGTCA 58.501 37.500 21.92 4.51 0.00 3.58
1802 1824 5.344743 TGGTAAATCAGATCTGTCAGGAC 57.655 43.478 21.92 13.84 0.00 3.85
1803 1825 4.142160 TGGTAAATCAGATCTGTCAGGACG 60.142 45.833 21.92 0.00 0.00 4.79
1834 1856 6.039159 TGTTGTTCTGTTCTGCATAACATCAA 59.961 34.615 16.92 17.27 41.63 2.57
1835 1857 6.245115 TGTTCTGTTCTGCATAACATCAAG 57.755 37.500 16.92 6.82 38.64 3.02
1836 1858 5.181811 TGTTCTGTTCTGCATAACATCAAGG 59.818 40.000 16.92 6.49 38.64 3.61
1837 1859 4.910195 TCTGTTCTGCATAACATCAAGGT 58.090 39.130 16.92 0.00 38.61 3.50
1838 1860 4.696877 TCTGTTCTGCATAACATCAAGGTG 59.303 41.667 16.92 5.21 38.61 4.00
1839 1861 3.191162 TGTTCTGCATAACATCAAGGTGC 59.809 43.478 13.15 0.00 34.50 5.01
1840 1862 3.354948 TCTGCATAACATCAAGGTGCT 57.645 42.857 0.00 0.00 36.78 4.40
1841 1863 3.689347 TCTGCATAACATCAAGGTGCTT 58.311 40.909 0.00 0.00 36.78 3.91
1842 1864 4.081406 TCTGCATAACATCAAGGTGCTTT 58.919 39.130 0.00 0.00 36.78 3.51
1843 1865 5.252547 TCTGCATAACATCAAGGTGCTTTA 58.747 37.500 0.00 0.00 36.78 1.85
1844 1866 5.123820 TCTGCATAACATCAAGGTGCTTTAC 59.876 40.000 0.00 0.00 36.78 2.01
1854 1876 2.253513 GTGCTTTACCACATGGCGT 58.746 52.632 0.00 0.00 39.32 5.68
1855 1877 1.444836 GTGCTTTACCACATGGCGTA 58.555 50.000 0.00 0.00 39.32 4.42
1856 1878 2.014128 GTGCTTTACCACATGGCGTAT 58.986 47.619 0.00 0.00 39.32 3.06
1857 1879 2.013400 TGCTTTACCACATGGCGTATG 58.987 47.619 0.00 1.05 42.68 2.39
1866 1888 1.953559 CATGGCGTATGTGGTAAGCT 58.046 50.000 0.00 0.00 37.83 3.74
1867 1889 1.599071 CATGGCGTATGTGGTAAGCTG 59.401 52.381 0.00 0.00 37.83 4.24
1868 1890 0.611200 TGGCGTATGTGGTAAGCTGT 59.389 50.000 0.00 0.00 37.83 4.40
1869 1891 1.287425 GGCGTATGTGGTAAGCTGTC 58.713 55.000 0.00 0.00 37.83 3.51
1870 1892 1.287425 GCGTATGTGGTAAGCTGTCC 58.713 55.000 0.00 0.00 35.29 4.02
1871 1893 1.404986 GCGTATGTGGTAAGCTGTCCA 60.405 52.381 6.09 6.09 35.29 4.02
1872 1894 2.933492 GCGTATGTGGTAAGCTGTCCAA 60.933 50.000 11.04 4.05 35.29 3.53
1873 1895 3.331150 CGTATGTGGTAAGCTGTCCAAA 58.669 45.455 11.04 7.16 35.38 3.28
1874 1896 3.749088 CGTATGTGGTAAGCTGTCCAAAA 59.251 43.478 11.04 4.63 35.38 2.44
1875 1897 4.214545 CGTATGTGGTAAGCTGTCCAAAAA 59.785 41.667 11.04 2.54 35.38 1.94
1876 1898 5.106317 CGTATGTGGTAAGCTGTCCAAAAAT 60.106 40.000 11.04 8.47 35.38 1.82
1877 1899 5.806654 ATGTGGTAAGCTGTCCAAAAATT 57.193 34.783 11.04 0.00 35.38 1.82
1878 1900 5.195001 TGTGGTAAGCTGTCCAAAAATTC 57.805 39.130 11.04 0.57 35.38 2.17
1879 1901 4.038642 TGTGGTAAGCTGTCCAAAAATTCC 59.961 41.667 11.04 0.00 35.38 3.01
1880 1902 4.038642 GTGGTAAGCTGTCCAAAAATTCCA 59.961 41.667 11.04 0.00 35.38 3.53
1881 1903 4.651503 TGGTAAGCTGTCCAAAAATTCCAA 59.348 37.500 7.55 0.00 0.00 3.53
1915 1937 1.009829 GGTGACGATGGACAATGAGC 58.990 55.000 0.00 0.00 0.00 4.26
1922 1944 2.570135 GATGGACAATGAGCTCCTTCC 58.430 52.381 12.15 11.63 0.00 3.46
1936 1958 4.414846 AGCTCCTTCCAACAATATCTGGAT 59.585 41.667 2.83 0.00 41.36 3.41
1940 1962 4.993584 CCTTCCAACAATATCTGGATCGAG 59.006 45.833 0.00 0.00 41.36 4.04
1948 1970 8.397906 CAACAATATCTGGATCGAGCTTTTAAA 58.602 33.333 0.00 0.00 0.00 1.52
1955 1977 4.277174 TGGATCGAGCTTTTAAAGTTTGCA 59.723 37.500 6.57 0.00 0.00 4.08
1962 1984 6.021468 CGAGCTTTTAAAGTTTGCATATTCCG 60.021 38.462 6.57 0.00 0.00 4.30
1968 1990 8.958175 TTTAAAGTTTGCATATTCCGTTGTAG 57.042 30.769 0.00 0.00 0.00 2.74
1980 2002 2.937799 TCCGTTGTAGACACCACAAAAC 59.062 45.455 0.00 0.00 37.62 2.43
1991 2013 3.214328 CACCACAAAACAGCCTTCTAGT 58.786 45.455 0.00 0.00 0.00 2.57
1996 2018 5.036737 CACAAAACAGCCTTCTAGTTGTTG 58.963 41.667 0.00 0.00 34.28 3.33
2000 2022 2.039084 ACAGCCTTCTAGTTGTTGGGAG 59.961 50.000 0.00 0.00 0.00 4.30
2001 2023 1.630878 AGCCTTCTAGTTGTTGGGAGG 59.369 52.381 0.00 0.00 0.00 4.30
2005 2027 4.470602 CCTTCTAGTTGTTGGGAGGTTTT 58.529 43.478 0.00 0.00 0.00 2.43
2011 2033 4.349365 AGTTGTTGGGAGGTTTTCTTTGA 58.651 39.130 0.00 0.00 0.00 2.69
2012 2034 4.962362 AGTTGTTGGGAGGTTTTCTTTGAT 59.038 37.500 0.00 0.00 0.00 2.57
2013 2035 4.935352 TGTTGGGAGGTTTTCTTTGATG 57.065 40.909 0.00 0.00 0.00 3.07
2068 2090 6.066690 CCATCTGGAACATGGTCTCATATTT 58.933 40.000 11.29 0.00 38.20 1.40
2092 2114 1.740380 CGCCTTATGTAGCAGCACTGT 60.740 52.381 0.00 0.00 0.00 3.55
2111 2133 2.622942 TGTTGCAATGAAACTCAGGGAC 59.377 45.455 0.59 0.00 0.00 4.46
2113 2135 2.783135 TGCAATGAAACTCAGGGACTC 58.217 47.619 0.00 0.00 34.60 3.36
2118 2180 0.321996 GAAACTCAGGGACTCGCCTT 59.678 55.000 0.00 0.00 34.60 4.35
2132 2194 4.448210 ACTCGCCTTCTGTTGTCTTTTAA 58.552 39.130 0.00 0.00 0.00 1.52
2134 2196 5.164606 TCGCCTTCTGTTGTCTTTTAAAC 57.835 39.130 0.00 0.00 0.00 2.01
2154 2221 6.796705 AAACACTAACAGTATGCTGGTTAC 57.203 37.500 15.65 0.00 40.28 2.50
2155 2222 4.491676 ACACTAACAGTATGCTGGTTACG 58.508 43.478 15.65 3.66 40.28 3.18
2172 2239 9.257651 GCTGGTTACGTATGTTCTCTTTATAAT 57.742 33.333 0.00 0.00 0.00 1.28
2245 2324 9.725206 AAAGTTATTTATCTCTAGTAGGGTGGA 57.275 33.333 0.00 0.00 0.00 4.02
2247 2326 9.725206 AGTTATTTATCTCTAGTAGGGTGGAAA 57.275 33.333 0.00 0.00 0.00 3.13
2253 2332 9.947189 TTATCTCTAGTAGGGTGGAAAATAGAA 57.053 33.333 0.00 0.00 0.00 2.10
2316 3127 8.370182 TGATATACAACATCTATGTGCATGTCT 58.630 33.333 0.00 0.00 41.61 3.41
2317 3128 8.768957 ATATACAACATCTATGTGCATGTCTC 57.231 34.615 0.00 0.00 41.61 3.36
2321 3136 7.222161 ACAACATCTATGTGCATGTCTCATAT 58.778 34.615 0.00 1.19 41.61 1.78
2322 3137 8.370182 ACAACATCTATGTGCATGTCTCATATA 58.630 33.333 0.00 6.26 41.61 0.86
2362 3177 5.353394 TCCTGTACCATTTCCTGTATGTC 57.647 43.478 0.00 0.00 0.00 3.06
2363 3178 5.030147 TCCTGTACCATTTCCTGTATGTCT 58.970 41.667 0.00 0.00 0.00 3.41
2364 3179 5.487488 TCCTGTACCATTTCCTGTATGTCTT 59.513 40.000 0.00 0.00 0.00 3.01
2368 3183 8.106247 TGTACCATTTCCTGTATGTCTTTTTC 57.894 34.615 0.00 0.00 0.00 2.29
2374 3189 7.510549 TTTCCTGTATGTCTTTTTCCTCAAG 57.489 36.000 0.00 0.00 0.00 3.02
2383 3198 7.316544 TGTCTTTTTCCTCAAGTTACAGAAC 57.683 36.000 0.00 0.00 35.64 3.01
2399 3214 4.510571 ACAGAACTTGTCAACTTAACCGT 58.489 39.130 0.00 0.00 33.87 4.83
2401 3216 3.311596 AGAACTTGTCAACTTAACCGTGC 59.688 43.478 0.00 0.00 0.00 5.34
2411 3226 5.350365 TCAACTTAACCGTGCTGATACATTC 59.650 40.000 0.00 0.00 0.00 2.67
2509 3324 5.532406 GTGACCACCATTGTGCATTCTATAT 59.468 40.000 0.00 0.00 41.35 0.86
2628 3445 2.578714 CCTCTGGCCTAGGATCGCC 61.579 68.421 14.75 6.90 45.92 5.54
2774 3591 4.768130 GGCTCAACCTCTTAACTTTTCC 57.232 45.455 0.00 0.00 34.51 3.13
2832 3650 7.986085 TCAGCTTCTTTGCTAGAACTTTATT 57.014 32.000 0.00 0.00 41.98 1.40
2833 3651 8.396272 TCAGCTTCTTTGCTAGAACTTTATTT 57.604 30.769 0.00 0.00 41.98 1.40
2839 3657 9.445786 TTCTTTGCTAGAACTTTATTTTTCACG 57.554 29.630 0.00 0.00 37.96 4.35
2864 3682 3.517602 TCCAAAGGTTGTGATATCGACG 58.482 45.455 0.00 0.00 0.00 5.12
2943 3761 4.080751 CCCAGCTTTCAAATCCATCCATTT 60.081 41.667 0.00 0.00 0.00 2.32
2955 3773 3.627123 TCCATCCATTTGTTAGCATGACG 59.373 43.478 0.00 0.00 0.00 4.35
2964 3782 6.801539 TTTGTTAGCATGACGAGAAAATCT 57.198 33.333 0.00 0.00 0.00 2.40
2987 3834 2.122413 ATGATAGCCGGCCCTCCA 60.122 61.111 26.15 16.73 0.00 3.86
3028 3875 2.944390 CCCAGGGGGTTAAGGGCA 60.944 66.667 0.00 0.00 38.25 5.36
3062 3909 1.620822 ATGTCCTCCCAAAAGTGTGC 58.379 50.000 0.00 0.00 0.00 4.57
3069 3916 3.254657 CCTCCCAAAAGTGTGCGAAAATA 59.745 43.478 0.00 0.00 0.00 1.40
3143 3999 0.745845 CAATGCCAAGGACGAGAGGG 60.746 60.000 0.00 0.00 0.00 4.30
3147 4003 1.296715 CCAAGGACGAGAGGGTTGG 59.703 63.158 0.00 0.00 34.46 3.77
3152 4008 1.668151 GACGAGAGGGTTGGTGCAC 60.668 63.158 8.80 8.80 0.00 4.57
3220 4079 1.575447 GGGATCCCCTCCAACTGCTT 61.575 60.000 21.42 0.00 46.98 3.91
3228 4087 0.322008 CTCCAACTGCTTGAGGACCC 60.322 60.000 0.00 0.00 0.00 4.46
3229 4088 1.303643 CCAACTGCTTGAGGACCCC 60.304 63.158 0.00 0.00 0.00 4.95
3230 4089 1.763770 CAACTGCTTGAGGACCCCT 59.236 57.895 0.00 0.00 36.03 4.79
3231 4090 0.984230 CAACTGCTTGAGGACCCCTA 59.016 55.000 0.00 0.00 31.76 3.53
3232 4091 0.984995 AACTGCTTGAGGACCCCTAC 59.015 55.000 0.00 0.00 31.76 3.18
3256 4115 3.253188 TGTTGACTGCAAGAACCATAAGC 59.747 43.478 0.00 0.00 37.43 3.09
3269 4128 1.747355 CCATAAGCTGGCTTCCAAGTG 59.253 52.381 11.28 4.83 38.47 3.16
3275 4134 4.043200 GGCTTCCAAGTGGCGTGC 62.043 66.667 0.00 0.00 34.44 5.34
3289 4148 1.429148 GCGTGCCGACCAGGAATAAG 61.429 60.000 0.00 0.00 45.00 1.73
3337 4196 0.250513 GAACTCTAGTGCCCCACTGG 59.749 60.000 8.06 5.35 45.01 4.00
3364 4223 1.041437 CCTAGTCGAGGGTGGAATCC 58.959 60.000 0.00 0.00 42.39 3.01
3403 4262 4.557605 CGCGCCCATCACCAATGC 62.558 66.667 0.00 0.00 33.71 3.56
3404 4263 3.142838 GCGCCCATCACCAATGCT 61.143 61.111 0.00 0.00 33.71 3.79
3438 4297 6.092533 GCCCACATCCTTCAAATAACAAATTG 59.907 38.462 0.00 0.00 0.00 2.32
3474 4334 1.201647 TGGTGAAGCTAGCGTGTAGTC 59.798 52.381 8.23 1.53 0.00 2.59
3480 4340 3.495670 AGCTAGCGTGTAGTCTGAAAG 57.504 47.619 9.55 0.00 0.00 2.62
3495 4355 5.095490 GTCTGAAAGTGTGACCAAAAAGTG 58.905 41.667 0.00 0.00 33.76 3.16
3527 4387 4.711949 AAGCAGCTCCGCCCTGTG 62.712 66.667 0.00 0.00 32.93 3.66
3534 4394 2.284625 TCCGCCCTGTGAGGATGT 60.285 61.111 0.00 0.00 38.11 3.06
3584 4444 2.737359 GCGAGACACCGATCACCAAATA 60.737 50.000 0.00 0.00 0.00 1.40
3585 4445 3.717707 CGAGACACCGATCACCAAATAT 58.282 45.455 0.00 0.00 0.00 1.28
3592 4452 5.364446 ACACCGATCACCAAATATGTAGGTA 59.636 40.000 0.00 0.00 33.49 3.08
3645 4505 2.500229 CTTTGTCAGGAGCCGGTTAAA 58.500 47.619 1.90 0.00 0.00 1.52
3646 4506 2.178912 TTGTCAGGAGCCGGTTAAAG 57.821 50.000 1.90 0.00 0.00 1.85
3647 4507 1.344065 TGTCAGGAGCCGGTTAAAGA 58.656 50.000 1.90 0.00 0.00 2.52
3648 4508 1.275291 TGTCAGGAGCCGGTTAAAGAG 59.725 52.381 1.90 0.00 0.00 2.85
3649 4509 1.275573 GTCAGGAGCCGGTTAAAGAGT 59.724 52.381 1.90 0.00 0.00 3.24
3650 4510 1.275291 TCAGGAGCCGGTTAAAGAGTG 59.725 52.381 1.90 0.00 0.00 3.51
3651 4511 1.002087 CAGGAGCCGGTTAAAGAGTGT 59.998 52.381 1.90 0.00 0.00 3.55
3652 4512 1.275573 AGGAGCCGGTTAAAGAGTGTC 59.724 52.381 1.90 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.364989 GGCAATTTGATTTTAGTGTGCTTATTA 57.635 29.630 0.00 0.00 0.00 0.98
37 38 2.945008 ACATGTGCTGAATAATGGACCG 59.055 45.455 0.00 0.00 0.00 4.79
51 52 1.211457 AGGGAGATTGGAGACATGTGC 59.789 52.381 1.15 0.00 42.32 4.57
73 74 1.426251 TTGTGGTCCATCTGGGCAGT 61.426 55.000 2.81 0.00 42.93 4.40
81 82 5.393461 GGATCAAACATCTTTGTGGTCCATC 60.393 44.000 0.00 0.00 38.38 3.51
82 83 4.463891 GGATCAAACATCTTTGTGGTCCAT 59.536 41.667 0.00 0.00 38.38 3.41
88 89 5.395682 ACATGGGATCAAACATCTTTGTG 57.604 39.130 0.00 0.00 38.38 3.33
97 98 2.806945 TCAGGGACATGGGATCAAAC 57.193 50.000 0.00 0.00 0.00 2.93
112 113 3.378112 TGCATAAGGAAGCGAAATTCAGG 59.622 43.478 0.00 0.00 0.00 3.86
121 122 0.815615 GGGGACTGCATAAGGAAGCG 60.816 60.000 0.00 0.00 0.00 4.68
130 131 1.530771 GAGAGCATGGGGACTGCAT 59.469 57.895 0.00 0.00 42.15 3.96
133 134 2.503061 CCGAGAGCATGGGGACTG 59.497 66.667 0.00 0.00 0.00 3.51
190 191 0.394488 TGGTCGGCAAGGTTTGTTCA 60.394 50.000 0.00 0.00 0.00 3.18
193 194 1.077357 TGTGGTCGGCAAGGTTTGT 60.077 52.632 0.00 0.00 0.00 2.83
202 203 0.103208 CTAGATGGTCTGTGGTCGGC 59.897 60.000 0.00 0.00 0.00 5.54
205 206 1.202313 GCGACTAGATGGTCTGTGGTC 60.202 57.143 0.00 0.00 34.38 4.02
229 230 2.695147 TGATCATGATATCCCGATCCCG 59.305 50.000 20.52 0.00 34.62 5.14
241 242 6.111382 CGGGCTAGTATTTGATGATCATGAT 58.889 40.000 14.30 8.25 0.00 2.45
250 251 3.577919 AGAGGACGGGCTAGTATTTGAT 58.422 45.455 0.00 0.00 0.00 2.57
256 257 0.924823 AGGAAGAGGACGGGCTAGTA 59.075 55.000 0.00 0.00 0.00 1.82
259 260 2.595238 GATAAGGAAGAGGACGGGCTA 58.405 52.381 0.00 0.00 0.00 3.93
269 270 5.072329 GGATGGTTCTGATGGATAAGGAAGA 59.928 44.000 0.00 0.00 0.00 2.87
271 272 4.104738 GGGATGGTTCTGATGGATAAGGAA 59.895 45.833 0.00 0.00 0.00 3.36
295 296 1.043673 GTCTGTCGGCTAGGATGGGT 61.044 60.000 0.00 0.00 0.00 4.51
300 301 0.612174 AGCAAGTCTGTCGGCTAGGA 60.612 55.000 0.00 0.00 34.25 2.94
304 305 2.358003 GCAGCAAGTCTGTCGGCT 60.358 61.111 0.00 0.00 44.66 5.52
307 308 0.390866 ATCCAGCAGCAAGTCTGTCG 60.391 55.000 0.00 0.00 44.66 4.35
310 311 1.370609 CTGATCCAGCAGCAAGTCTG 58.629 55.000 0.00 0.00 45.62 3.51
322 323 2.553028 GGAGAGCAAAACACCTGATCCA 60.553 50.000 0.00 0.00 29.28 3.41
351 352 1.002251 CTAGCCGGAGATCGTCTGAAC 60.002 57.143 5.05 0.00 37.11 3.18
353 354 1.167155 GCTAGCCGGAGATCGTCTGA 61.167 60.000 5.05 0.00 37.11 3.27
355 356 1.149627 AGCTAGCCGGAGATCGTCT 59.850 57.895 12.13 0.00 37.11 4.18
392 393 2.586792 GGCTGAGACGCCCAATCT 59.413 61.111 0.00 0.00 44.41 2.40
404 405 3.210223 TAACAACGACGGCGGCTGA 62.210 57.895 18.49 0.00 43.17 4.26
405 406 2.735478 TAACAACGACGGCGGCTG 60.735 61.111 18.49 15.18 43.17 4.85
414 415 2.650196 CGACCCCGGTAACAACGA 59.350 61.111 0.00 0.00 0.00 3.85
418 419 2.233605 CTCATGCGACCCCGGTAACA 62.234 60.000 0.00 0.00 36.06 2.41
420 421 2.727392 CCTCATGCGACCCCGGTAA 61.727 63.158 0.00 0.00 36.06 2.85
421 422 3.151710 CCTCATGCGACCCCGGTA 61.152 66.667 0.00 0.00 36.06 4.02
431 432 1.000060 TGCTGCAAAGAAACCTCATGC 60.000 47.619 0.00 0.00 37.25 4.06
432 433 2.295349 ACTGCTGCAAAGAAACCTCATG 59.705 45.455 3.02 0.00 0.00 3.07
433 434 2.555757 GACTGCTGCAAAGAAACCTCAT 59.444 45.455 3.02 0.00 0.00 2.90
459 460 1.403687 GGCGGAGAAGGCTAGTGGAT 61.404 60.000 0.00 0.00 0.00 3.41
460 461 2.058595 GGCGGAGAAGGCTAGTGGA 61.059 63.158 0.00 0.00 0.00 4.02
462 463 0.249657 GATGGCGGAGAAGGCTAGTG 60.250 60.000 0.00 0.00 37.59 2.74
463 464 1.739338 CGATGGCGGAGAAGGCTAGT 61.739 60.000 0.00 0.00 37.59 2.57
464 465 1.006805 CGATGGCGGAGAAGGCTAG 60.007 63.158 0.00 0.00 37.59 3.42
465 466 3.129300 CGATGGCGGAGAAGGCTA 58.871 61.111 0.00 0.00 37.59 3.93
493 503 2.314647 CGGCGGCTTTTCTTCGTCA 61.315 57.895 7.61 0.00 0.00 4.35
495 505 3.723348 GCGGCGGCTTTTCTTCGT 61.723 61.111 9.78 0.00 35.83 3.85
496 506 4.794241 CGCGGCGGCTTTTCTTCG 62.794 66.667 15.84 0.00 36.88 3.79
543 555 4.203076 GTCTACGGCGGCGGTCAT 62.203 66.667 35.05 16.91 0.00 3.06
558 571 3.429372 TTGCTGGGGGTGGTGTGTC 62.429 63.158 0.00 0.00 0.00 3.67
561 574 1.943730 TTTCTTGCTGGGGGTGGTGT 61.944 55.000 0.00 0.00 0.00 4.16
611 625 4.838152 GGCAGGAGGCGATTGCGA 62.838 66.667 0.00 0.00 46.16 5.10
626 640 3.122971 GGTGAAACGCTACGGGGC 61.123 66.667 0.00 0.00 38.12 5.80
641 655 1.131928 GTAAGGGGTCCACCACAGGT 61.132 60.000 0.00 0.00 43.57 4.00
656 670 2.358939 AAGTAACAGGACGCGGTAAG 57.641 50.000 12.47 0.00 0.00 2.34
657 671 2.556189 TGTAAGTAACAGGACGCGGTAA 59.444 45.455 12.47 0.00 33.01 2.85
658 672 2.095263 GTGTAAGTAACAGGACGCGGTA 60.095 50.000 12.47 0.00 39.29 4.02
659 673 0.961019 TGTAAGTAACAGGACGCGGT 59.039 50.000 12.47 0.00 33.01 5.68
660 674 1.336148 TGTGTAAGTAACAGGACGCGG 60.336 52.381 12.47 0.00 39.29 6.46
661 675 1.717645 GTGTGTAAGTAACAGGACGCG 59.282 52.381 3.53 3.53 39.29 6.01
662 676 2.064014 GGTGTGTAAGTAACAGGACGC 58.936 52.381 0.00 0.00 39.29 5.19
663 677 3.005050 TGAGGTGTGTAAGTAACAGGACG 59.995 47.826 0.00 0.00 39.29 4.79
664 678 4.595762 TGAGGTGTGTAAGTAACAGGAC 57.404 45.455 0.00 0.00 39.29 3.85
665 679 5.818678 ATTGAGGTGTGTAAGTAACAGGA 57.181 39.130 0.00 0.00 39.29 3.86
666 680 5.995282 TCAATTGAGGTGTGTAAGTAACAGG 59.005 40.000 3.38 0.00 39.29 4.00
667 681 6.073222 GGTCAATTGAGGTGTGTAAGTAACAG 60.073 42.308 8.80 0.00 39.29 3.16
668 682 5.761234 GGTCAATTGAGGTGTGTAAGTAACA 59.239 40.000 8.80 0.00 35.06 2.41
669 683 5.180680 GGGTCAATTGAGGTGTGTAAGTAAC 59.819 44.000 8.80 0.00 0.00 2.50
670 684 5.072600 AGGGTCAATTGAGGTGTGTAAGTAA 59.927 40.000 8.80 0.00 0.00 2.24
671 685 4.595781 AGGGTCAATTGAGGTGTGTAAGTA 59.404 41.667 8.80 0.00 0.00 2.24
672 686 3.394606 AGGGTCAATTGAGGTGTGTAAGT 59.605 43.478 8.80 0.00 0.00 2.24
673 687 4.021102 AGGGTCAATTGAGGTGTGTAAG 57.979 45.455 8.80 0.00 0.00 2.34
674 688 4.141287 CAAGGGTCAATTGAGGTGTGTAA 58.859 43.478 8.80 0.00 0.00 2.41
675 689 3.392947 TCAAGGGTCAATTGAGGTGTGTA 59.607 43.478 8.80 0.00 32.96 2.90
676 690 2.174639 TCAAGGGTCAATTGAGGTGTGT 59.825 45.455 8.80 0.00 32.96 3.72
677 691 2.816087 CTCAAGGGTCAATTGAGGTGTG 59.184 50.000 8.80 5.66 46.45 3.82
678 692 3.146104 CTCAAGGGTCAATTGAGGTGT 57.854 47.619 8.80 0.00 46.45 4.16
683 697 3.251484 AGTCTCCTCAAGGGTCAATTGA 58.749 45.455 3.38 3.38 35.45 2.57
684 698 3.604582 GAGTCTCCTCAAGGGTCAATTG 58.395 50.000 0.00 0.00 37.67 2.32
685 699 2.573915 GGAGTCTCCTCAAGGGTCAATT 59.426 50.000 12.02 0.00 39.64 2.32
686 700 2.192263 GGAGTCTCCTCAAGGGTCAAT 58.808 52.381 12.02 0.00 39.64 2.57
687 701 1.645710 GGAGTCTCCTCAAGGGTCAA 58.354 55.000 12.02 0.00 39.64 3.18
688 702 0.252284 GGGAGTCTCCTCAAGGGTCA 60.252 60.000 18.58 0.00 39.64 4.02
689 703 0.041982 AGGGAGTCTCCTCAAGGGTC 59.958 60.000 18.58 0.00 39.64 4.46
690 704 1.394532 TAGGGAGTCTCCTCAAGGGT 58.605 55.000 18.58 0.00 39.64 4.34
691 705 2.112190 GTTAGGGAGTCTCCTCAAGGG 58.888 57.143 18.58 0.00 39.64 3.95
692 706 1.751924 CGTTAGGGAGTCTCCTCAAGG 59.248 57.143 18.58 13.26 39.64 3.61
693 707 2.685897 CTCGTTAGGGAGTCTCCTCAAG 59.314 54.545 18.58 7.12 39.64 3.02
694 708 2.724454 CTCGTTAGGGAGTCTCCTCAA 58.276 52.381 18.58 9.79 39.64 3.02
695 709 1.682394 GCTCGTTAGGGAGTCTCCTCA 60.682 57.143 18.58 3.96 39.64 3.86
696 710 1.026584 GCTCGTTAGGGAGTCTCCTC 58.973 60.000 18.58 8.84 38.30 3.71
697 711 0.626916 AGCTCGTTAGGGAGTCTCCT 59.373 55.000 18.58 7.38 40.79 3.69
698 712 1.026584 GAGCTCGTTAGGGAGTCTCC 58.973 60.000 10.78 10.78 36.41 3.71
699 713 1.026584 GGAGCTCGTTAGGGAGTCTC 58.973 60.000 7.83 0.00 36.92 3.36
700 714 0.626916 AGGAGCTCGTTAGGGAGTCT 59.373 55.000 7.83 0.00 36.41 3.24
701 715 2.345124 TAGGAGCTCGTTAGGGAGTC 57.655 55.000 15.09 0.00 36.41 3.36
702 716 2.822707 TTAGGAGCTCGTTAGGGAGT 57.177 50.000 15.09 0.00 36.41 3.85
703 717 4.372656 CAATTTAGGAGCTCGTTAGGGAG 58.627 47.826 15.09 0.00 37.11 4.30
704 718 3.134081 CCAATTTAGGAGCTCGTTAGGGA 59.866 47.826 15.09 0.00 0.00 4.20
705 719 3.118371 ACCAATTTAGGAGCTCGTTAGGG 60.118 47.826 15.09 11.50 0.00 3.53
706 720 4.138487 ACCAATTTAGGAGCTCGTTAGG 57.862 45.455 15.09 11.48 0.00 2.69
707 721 4.201822 GCAACCAATTTAGGAGCTCGTTAG 60.202 45.833 15.09 3.78 32.96 2.34
708 722 3.687698 GCAACCAATTTAGGAGCTCGTTA 59.312 43.478 15.09 2.06 32.96 3.18
709 723 2.488153 GCAACCAATTTAGGAGCTCGTT 59.512 45.455 15.09 3.90 32.96 3.85
710 724 2.084546 GCAACCAATTTAGGAGCTCGT 58.915 47.619 14.25 14.25 32.96 4.18
711 725 2.352960 GAGCAACCAATTTAGGAGCTCG 59.647 50.000 7.83 0.00 44.04 5.03
713 727 2.310052 AGGAGCAACCAATTTAGGAGCT 59.690 45.455 0.00 0.00 42.85 4.09
714 728 2.728007 AGGAGCAACCAATTTAGGAGC 58.272 47.619 2.96 0.00 42.04 4.70
715 729 5.728637 AAAAGGAGCAACCAATTTAGGAG 57.271 39.130 2.96 0.00 42.04 3.69
738 752 7.893658 AGTACTCCTCACTATTTCGAGAAAAA 58.106 34.615 2.17 0.00 33.56 1.94
739 753 7.176165 TGAGTACTCCTCACTATTTCGAGAAAA 59.824 37.037 20.11 0.00 45.34 2.29
740 754 6.657966 TGAGTACTCCTCACTATTTCGAGAAA 59.342 38.462 20.11 0.40 45.34 2.52
741 755 6.178324 TGAGTACTCCTCACTATTTCGAGAA 58.822 40.000 20.11 0.00 45.34 2.87
742 756 5.742063 TGAGTACTCCTCACTATTTCGAGA 58.258 41.667 20.11 0.00 45.34 4.04
754 768 2.879646 CACGAGGGTATGAGTACTCCTC 59.120 54.545 20.11 17.07 40.81 3.71
791 805 1.569493 CGGAAAAGCTCCACACACG 59.431 57.895 0.00 0.00 45.74 4.49
802 816 1.202348 GAGAACAATGGGCCGGAAAAG 59.798 52.381 5.05 0.00 0.00 2.27
837 851 0.251634 GCTAGTTGCTCTTCTGGGCT 59.748 55.000 0.00 0.00 38.95 5.19
870 884 1.628846 TCTTTGGGTTCTAGGGAGCAC 59.371 52.381 0.00 0.00 0.00 4.40
871 885 1.628846 GTCTTTGGGTTCTAGGGAGCA 59.371 52.381 0.00 0.00 0.00 4.26
888 902 2.363925 GGTAGGTGGGCCTCGTCT 60.364 66.667 4.53 0.00 45.64 4.18
946 963 1.266466 GGCGCGAAGAGTAAGTGTAC 58.734 55.000 12.10 0.00 0.00 2.90
1056 1073 2.253392 AACGAGATACACGAACGGAC 57.747 50.000 0.00 0.00 34.70 4.79
1070 1087 3.729716 GCGTGTTAGGCTAGATTAACGAG 59.270 47.826 15.74 1.34 33.52 4.18
1446 1463 6.053650 TCACAAGCATCCAGATCTTCTAATG 58.946 40.000 0.00 0.00 0.00 1.90
1485 1502 1.810151 TGTTTTGGCGTGAATCTAGGC 59.190 47.619 0.00 0.00 0.00 3.93
1493 1510 0.941542 GCTGTACTGTTTTGGCGTGA 59.058 50.000 1.46 0.00 0.00 4.35
1498 1515 1.206578 CGGCGCTGTACTGTTTTGG 59.793 57.895 8.45 0.00 0.00 3.28
1499 1516 0.384230 CACGGCGCTGTACTGTTTTG 60.384 55.000 23.84 2.80 0.00 2.44
1500 1517 0.531090 TCACGGCGCTGTACTGTTTT 60.531 50.000 23.84 0.00 0.00 2.43
1506 1523 0.163146 GTTTCTTCACGGCGCTGTAC 59.837 55.000 23.84 11.96 0.00 2.90
1511 1528 0.517316 AAGATGTTTCTTCACGGCGC 59.483 50.000 6.90 0.00 37.69 6.53
1527 1544 6.713903 AGTCGATACCCTATCATCGTTTAAGA 59.286 38.462 4.15 0.00 43.46 2.10
1529 1546 6.713903 AGAGTCGATACCCTATCATCGTTTAA 59.286 38.462 4.15 0.00 43.46 1.52
1530 1547 6.236409 AGAGTCGATACCCTATCATCGTTTA 58.764 40.000 4.15 0.00 43.46 2.01
1551 1568 5.290643 CCGTCTGCTAAAGAAATCAAGAGAG 59.709 44.000 0.00 0.00 36.40 3.20
1571 1588 1.987770 CATTCAAAAGCATGCACCGTC 59.012 47.619 21.98 0.00 0.00 4.79
1575 1592 2.544686 TGCAACATTCAAAAGCATGCAC 59.455 40.909 21.98 0.00 37.40 4.57
1583 1600 6.817641 AGACAGTTTTCATGCAACATTCAAAA 59.182 30.769 9.49 0.00 0.00 2.44
1597 1615 6.827586 AGGTGTGTTTTAAGACAGTTTTCA 57.172 33.333 0.00 0.00 32.43 2.69
1603 1621 8.015658 GCAGTATAAAGGTGTGTTTTAAGACAG 58.984 37.037 0.00 0.00 32.43 3.51
1622 1640 8.942338 ACGTCATAAAAGAAATGAGCAGTATA 57.058 30.769 0.00 0.00 34.12 1.47
1644 1662 5.190992 TCTATACACAACAGTGACAACGT 57.809 39.130 0.00 0.00 37.04 3.99
1698 1720 7.115378 GGAATTTTGACAACAGCATACTTCAAG 59.885 37.037 0.00 0.00 0.00 3.02
1732 1754 9.189156 AGCTAAATCAAATAATGGCAGACTTTA 57.811 29.630 0.00 0.00 0.00 1.85
1740 1762 8.902040 GCTACATAGCTAAATCAAATAATGGC 57.098 34.615 0.00 0.00 45.62 4.40
1758 1780 5.450826 CCAATGCAGCAATGAAAGCTACATA 60.451 40.000 12.37 0.00 43.40 2.29
1770 1792 5.597182 AGATCTGATTTACCAATGCAGCAAT 59.403 36.000 0.00 0.00 0.00 3.56
1777 1799 6.259608 GTCCTGACAGATCTGATTTACCAATG 59.740 42.308 29.27 9.91 0.00 2.82
1778 1800 6.352516 GTCCTGACAGATCTGATTTACCAAT 58.647 40.000 29.27 2.82 0.00 3.16
1779 1801 5.624509 CGTCCTGACAGATCTGATTTACCAA 60.625 44.000 29.27 3.99 0.00 3.67
1780 1802 4.142160 CGTCCTGACAGATCTGATTTACCA 60.142 45.833 29.27 13.95 0.00 3.25
1781 1803 4.098044 TCGTCCTGACAGATCTGATTTACC 59.902 45.833 29.27 11.08 0.00 2.85
1782 1804 5.250235 TCGTCCTGACAGATCTGATTTAC 57.750 43.478 29.27 16.97 0.00 2.01
1798 1820 3.541632 ACAGAACAACAAATGTCGTCCT 58.458 40.909 0.00 0.00 42.99 3.85
1802 1824 3.725740 GCAGAACAGAACAACAAATGTCG 59.274 43.478 0.00 0.00 42.99 4.35
1803 1825 4.671377 TGCAGAACAGAACAACAAATGTC 58.329 39.130 0.00 0.00 42.99 3.06
1836 1858 1.444836 TACGCCATGTGGTAAAGCAC 58.555 50.000 5.37 5.37 37.57 4.40
1837 1859 2.013400 CATACGCCATGTGGTAAAGCA 58.987 47.619 0.35 0.00 37.57 3.91
1838 1860 2.014128 ACATACGCCATGTGGTAAAGC 58.986 47.619 2.65 0.00 46.41 3.51
1847 1869 1.599071 CAGCTTACCACATACGCCATG 59.401 52.381 0.00 0.00 40.78 3.66
1848 1870 1.209504 ACAGCTTACCACATACGCCAT 59.790 47.619 0.00 0.00 0.00 4.40
1849 1871 0.611200 ACAGCTTACCACATACGCCA 59.389 50.000 0.00 0.00 0.00 5.69
1850 1872 1.287425 GACAGCTTACCACATACGCC 58.713 55.000 0.00 0.00 0.00 5.68
1851 1873 1.287425 GGACAGCTTACCACATACGC 58.713 55.000 1.50 0.00 0.00 4.42
1852 1874 2.665649 TGGACAGCTTACCACATACG 57.334 50.000 4.70 0.00 0.00 3.06
1853 1875 5.699097 TTTTTGGACAGCTTACCACATAC 57.301 39.130 7.99 0.00 35.81 2.39
1854 1876 6.071616 GGAATTTTTGGACAGCTTACCACATA 60.072 38.462 7.99 0.00 35.81 2.29
1855 1877 5.279456 GGAATTTTTGGACAGCTTACCACAT 60.279 40.000 7.99 0.05 35.81 3.21
1856 1878 4.038642 GGAATTTTTGGACAGCTTACCACA 59.961 41.667 7.99 0.02 35.81 4.17
1857 1879 4.038642 TGGAATTTTTGGACAGCTTACCAC 59.961 41.667 7.99 0.00 35.81 4.16
1858 1880 4.219115 TGGAATTTTTGGACAGCTTACCA 58.781 39.130 4.70 4.70 0.00 3.25
1859 1881 4.864704 TGGAATTTTTGGACAGCTTACC 57.135 40.909 0.00 0.00 0.00 2.85
1860 1882 5.596845 TGTTGGAATTTTTGGACAGCTTAC 58.403 37.500 0.00 0.00 0.00 2.34
1861 1883 5.860941 TGTTGGAATTTTTGGACAGCTTA 57.139 34.783 0.00 0.00 0.00 3.09
1862 1884 4.751767 TGTTGGAATTTTTGGACAGCTT 57.248 36.364 0.00 0.00 0.00 3.74
1863 1885 4.344679 TGATGTTGGAATTTTTGGACAGCT 59.655 37.500 0.00 0.00 0.00 4.24
1864 1886 4.630111 TGATGTTGGAATTTTTGGACAGC 58.370 39.130 0.00 0.00 0.00 4.40
1865 1887 5.697633 CCTTGATGTTGGAATTTTTGGACAG 59.302 40.000 0.00 0.00 0.00 3.51
1866 1888 5.130145 ACCTTGATGTTGGAATTTTTGGACA 59.870 36.000 0.00 0.00 0.00 4.02
1867 1889 5.610398 ACCTTGATGTTGGAATTTTTGGAC 58.390 37.500 0.00 0.00 0.00 4.02
1868 1890 5.885449 ACCTTGATGTTGGAATTTTTGGA 57.115 34.783 0.00 0.00 0.00 3.53
1869 1891 6.758254 AGTACCTTGATGTTGGAATTTTTGG 58.242 36.000 0.00 0.00 0.00 3.28
1870 1892 8.550376 CAAAGTACCTTGATGTTGGAATTTTTG 58.450 33.333 0.00 0.00 0.00 2.44
1871 1893 7.714813 CCAAAGTACCTTGATGTTGGAATTTTT 59.285 33.333 5.75 0.00 38.20 1.94
1872 1894 7.147567 ACCAAAGTACCTTGATGTTGGAATTTT 60.148 33.333 5.75 0.00 38.20 1.82
1873 1895 6.326323 ACCAAAGTACCTTGATGTTGGAATTT 59.674 34.615 5.75 0.00 38.20 1.82
1874 1896 5.838521 ACCAAAGTACCTTGATGTTGGAATT 59.161 36.000 5.75 0.00 38.20 2.17
1875 1897 5.243730 CACCAAAGTACCTTGATGTTGGAAT 59.756 40.000 5.75 0.00 38.20 3.01
1876 1898 4.582656 CACCAAAGTACCTTGATGTTGGAA 59.417 41.667 5.75 0.00 38.20 3.53
1877 1899 4.141287 CACCAAAGTACCTTGATGTTGGA 58.859 43.478 5.75 0.00 38.20 3.53
1878 1900 4.023193 GTCACCAAAGTACCTTGATGTTGG 60.023 45.833 5.75 0.00 41.06 3.77
1879 1901 4.319477 CGTCACCAAAGTACCTTGATGTTG 60.319 45.833 5.75 0.00 0.00 3.33
1880 1902 3.813166 CGTCACCAAAGTACCTTGATGTT 59.187 43.478 5.75 0.00 0.00 2.71
1881 1903 3.070446 TCGTCACCAAAGTACCTTGATGT 59.930 43.478 5.75 0.00 0.00 3.06
1915 1937 4.993584 CGATCCAGATATTGTTGGAAGGAG 59.006 45.833 8.16 0.00 45.94 3.69
1922 1944 5.998454 AAAGCTCGATCCAGATATTGTTG 57.002 39.130 0.00 0.00 0.00 3.33
1936 1958 7.027161 GGAATATGCAAACTTTAAAAGCTCGA 58.973 34.615 0.00 0.00 0.00 4.04
1940 1962 6.944557 ACGGAATATGCAAACTTTAAAAGC 57.055 33.333 0.00 0.00 0.00 3.51
1948 1970 5.121768 GTGTCTACAACGGAATATGCAAACT 59.878 40.000 0.00 0.00 0.00 2.66
1955 1977 4.811969 TGTGGTGTCTACAACGGAATAT 57.188 40.909 0.00 0.00 36.03 1.28
1962 1984 3.488553 GGCTGTTTTGTGGTGTCTACAAC 60.489 47.826 0.00 0.00 37.73 3.32
1968 1990 2.024414 AGAAGGCTGTTTTGTGGTGTC 58.976 47.619 0.00 0.00 0.00 3.67
1980 2002 2.616510 CCTCCCAACAACTAGAAGGCTG 60.617 54.545 0.00 0.00 0.00 4.85
1991 2013 4.959210 TCATCAAAGAAAACCTCCCAACAA 59.041 37.500 0.00 0.00 0.00 2.83
2068 2090 3.069586 AGTGCTGCTACATAAGGCGATAA 59.930 43.478 0.00 0.00 0.00 1.75
2092 2114 3.149196 GAGTCCCTGAGTTTCATTGCAA 58.851 45.455 0.00 0.00 0.00 4.08
2106 2128 1.122019 ACAACAGAAGGCGAGTCCCT 61.122 55.000 0.00 0.00 36.58 4.20
2111 2133 5.205565 GTTTAAAAGACAACAGAAGGCGAG 58.794 41.667 0.00 0.00 0.00 5.03
2113 2135 4.733405 GTGTTTAAAAGACAACAGAAGGCG 59.267 41.667 0.00 0.00 33.55 5.52
2118 2180 8.556213 ACTGTTAGTGTTTAAAAGACAACAGA 57.444 30.769 26.13 9.45 41.09 3.41
2132 2194 4.927425 CGTAACCAGCATACTGTTAGTGTT 59.073 41.667 0.00 0.00 42.81 3.32
2134 2196 4.491676 ACGTAACCAGCATACTGTTAGTG 58.508 43.478 0.00 0.00 42.81 2.74
2214 2293 9.817809 CCTACTAGAGATAAATAACTTTGTGCA 57.182 33.333 0.00 0.00 0.00 4.57
2237 2316 7.208064 AGCTACAATTCTATTTTCCACCCTA 57.792 36.000 0.00 0.00 0.00 3.53
2294 3105 6.585416 TGAGACATGCACATAGATGTTGTAT 58.415 36.000 0.00 0.00 39.39 2.29
2322 3137 8.204836 GGTACAGGAACACACTGAATAATATCT 58.795 37.037 0.00 0.00 39.24 1.98
2374 3189 6.036408 ACGGTTAAGTTGACAAGTTCTGTAAC 59.964 38.462 11.53 10.20 38.84 2.50
2383 3198 2.869801 TCAGCACGGTTAAGTTGACAAG 59.130 45.455 0.00 0.00 0.00 3.16
2384 3199 2.907634 TCAGCACGGTTAAGTTGACAA 58.092 42.857 0.00 0.00 0.00 3.18
2399 3214 7.645402 CATTATCTGCAAAGAATGTATCAGCA 58.355 34.615 0.00 0.00 33.49 4.41
2509 3324 2.828520 CAGTTCTAGCCTCTCAAGGTCA 59.171 50.000 0.00 0.00 45.34 4.02
2637 3454 1.674962 GCTCCTCAGACAATGGCATTC 59.325 52.381 10.36 0.00 0.00 2.67
2773 3590 2.762535 TCTTTTAACCCAGAGAGCGG 57.237 50.000 0.00 0.00 0.00 5.52
2774 3591 4.116238 GAGATCTTTTAACCCAGAGAGCG 58.884 47.826 0.00 0.00 30.37 5.03
2832 3650 2.341846 ACCTTTGGAGCTCGTGAAAA 57.658 45.000 7.83 5.14 0.00 2.29
2833 3651 1.946768 CAACCTTTGGAGCTCGTGAAA 59.053 47.619 7.83 5.89 0.00 2.69
2839 3657 3.557595 CGATATCACAACCTTTGGAGCTC 59.442 47.826 4.71 4.71 34.12 4.09
2876 3694 5.592282 TCATCACAAGTTTAAAGGCAAGACA 59.408 36.000 0.00 0.00 0.00 3.41
2882 3700 9.076596 GTATCATTTCATCACAAGTTTAAAGGC 57.923 33.333 0.00 0.00 0.00 4.35
2943 3761 5.931724 TCAAGATTTTCTCGTCATGCTAACA 59.068 36.000 0.00 0.00 0.00 2.41
2955 3773 5.333952 CGGCTATCATGCTCAAGATTTTCTC 60.334 44.000 0.00 0.00 0.00 2.87
2964 3782 1.227943 GGCCGGCTATCATGCTCAA 60.228 57.895 28.56 0.00 0.00 3.02
2987 3834 8.971073 GGGCTATGTGGCAATATATCTAATTTT 58.029 33.333 0.00 0.00 43.83 1.82
3028 3875 4.902448 GGAGGACATTAGAGACATTAGGGT 59.098 45.833 0.00 0.00 0.00 4.34
3062 3909 6.430000 CCCCTACAAGGATAATGGTATTTTCG 59.570 42.308 0.00 0.00 37.67 3.46
3069 3916 2.498441 TGCCCCTACAAGGATAATGGT 58.502 47.619 0.00 0.00 37.67 3.55
3143 3999 1.327303 TTTGGAGGATGTGCACCAAC 58.673 50.000 15.69 3.89 41.22 3.77
3147 4003 1.838112 TGGATTTGGAGGATGTGCAC 58.162 50.000 10.75 10.75 0.00 4.57
3172 4028 1.475751 CCAAGGTGATCATCCTTCGGG 60.476 57.143 20.24 16.80 42.57 5.14
3178 4034 0.533755 CCTCGCCAAGGTGATCATCC 60.534 60.000 1.24 4.30 40.67 3.51
3220 4079 1.975680 GTCAACAAGTAGGGGTCCTCA 59.024 52.381 0.00 0.00 34.61 3.86
3228 4087 3.251004 GGTTCTTGCAGTCAACAAGTAGG 59.749 47.826 3.67 0.00 43.97 3.18
3229 4088 3.876914 TGGTTCTTGCAGTCAACAAGTAG 59.123 43.478 3.67 0.00 43.97 2.57
3230 4089 3.879998 TGGTTCTTGCAGTCAACAAGTA 58.120 40.909 3.67 0.00 43.97 2.24
3231 4090 2.722094 TGGTTCTTGCAGTCAACAAGT 58.278 42.857 3.67 0.00 43.97 3.16
3232 4091 3.996150 ATGGTTCTTGCAGTCAACAAG 57.004 42.857 6.78 0.00 44.76 3.16
3256 4115 2.281761 ACGCCACTTGGAAGCCAG 60.282 61.111 0.00 0.00 37.39 4.85
3275 4134 2.027561 TGGTCAACTTATTCCTGGTCGG 60.028 50.000 0.00 0.00 0.00 4.79
3280 4139 7.362920 CCACCTTAATTGGTCAACTTATTCCTG 60.363 40.741 0.00 0.00 38.45 3.86
3289 4148 3.056821 GGAAGCCACCTTAATTGGTCAAC 60.057 47.826 5.40 0.00 38.45 3.18
3364 4223 0.182537 TTAGCCCCATTCCACATCGG 59.817 55.000 0.00 0.00 0.00 4.18
3438 4297 1.974543 CCAAATGCTTGGTGACCCC 59.025 57.895 0.00 0.00 46.25 4.95
3464 4323 2.361119 TCACACTTTCAGACTACACGCT 59.639 45.455 0.00 0.00 0.00 5.07
3474 4334 5.059404 ACACTTTTTGGTCACACTTTCAG 57.941 39.130 0.00 0.00 0.00 3.02
3480 4340 4.102649 GTGCTTACACTTTTTGGTCACAC 58.897 43.478 0.00 0.00 43.85 3.82
3495 4355 3.023591 GCTTGCGGTCCGTGCTTAC 62.024 63.158 13.94 0.00 0.00 2.34
3527 4387 6.599244 TGATGTGGTTATCTTTTGACATCCTC 59.401 38.462 0.00 0.00 39.18 3.71
3534 4394 6.720309 TGGAGATGATGTGGTTATCTTTTGA 58.280 36.000 0.00 0.00 33.66 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.